BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020357
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IUH2|CREG2_HUMAN Protein CREG2 OS=Homo sapiens GN=CREG2 PE=1 SV=1
Length = 290
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 31/175 (17%)
Query: 84 ARLPPLEEIRTVLDRS-----VRGMLSTFS--QKYEGYPSGSMVDFA----CDADGTPIL 132
A PP +R RS V G L+T S +K +G P G+ + + ++ G P
Sbjct: 114 ASAPPGPRLRAATARSLAHASVWGCLATVSTHKKIQGLPFGNCLPVSDGPFNNSTGIPFF 173
Query: 133 AVSSLAVHTKDLLANPKCSLLVAR-----------DPEDRTDLVITLHGDATSVAEKDKA 181
+++ DL+ NP SL++ DPED + +TL G +V+ ++
Sbjct: 174 YMTAKDPVVADLMKNPMASLMLPESEGEFCRKNIVDPEDPRCVQLTLTGQMIAVSPEEVE 233
Query: 182 AIRAVYLAKHPNAF-WVDFGDFQF--MRIEPKAVRYVSGVATALLGSGEFSKEEY 233
+ ++HP W ++ F MRIE ++ G G+ S+EEY
Sbjct: 234 FAKQAMFSRHPGMRKWPRQYEWFFMKMRIEHIWLQKWYG------GASSISREEY 282
>sp|O67377|NNR_AQUAE Bifunctional NAD(P)H-hydrate repair enzyme Nnr OS=Aquifex aeolicus
(strain VF5) GN=nnr PE=3 SV=1
Length = 499
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 126 ADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEK 178
ADGTP LA T D+LA +L+ D E+ L + LHG A VAEK
Sbjct: 425 ADGTPALAKGG----TGDVLAGILTALIAKMDTEEALKLGVYLHGLAGKVAEK 473
>sp|P11405|T2M1_MORSP Type-2 restriction enzyme MspI OS=Moraxella sp. GN=mspIR PE=1 SV=1
Length = 262
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 13/104 (12%)
Query: 21 TPHSSPMLRFC-HSTTRLSSFTPLSF--TLRRQLPMASFSAQAVSTGDVKSDANVFELIQ 77
+P + +RF H+ + S PL+ + ++++ +A + + + TG SD + ELI+
Sbjct: 95 SPKTDATIRFTFHNQS--SRLVPLNIKHSSKKKVSIAEYDVETICTGVGISDGELKELIR 152
Query: 78 KHQ--EAAARLPPLEEIRTV------LDRSVRGMLSTFSQKYEG 113
KHQ ++A P+++ R +R +R ++ ++K EG
Sbjct: 153 KHQNDQSAKLFTPVQKQRLTELLEPYRERFIRWCVTLRAEKSEG 196
>sp|Q8BGC9|CREG2_MOUSE Protein CREG2 OS=Mus musculus GN=Creg2 PE=1 SV=1
Length = 288
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 28/162 (17%)
Query: 93 RTVLDRSVRGMLSTFS--QKYEGYPSGSMVDFA----CDADGTPILAVSSLAVHTKDLLA 146
R++ S G L+T S +K +G P GS + + ++ G P +++ DL+
Sbjct: 126 RSLAHASSWGCLATVSTHEKIQGLPFGSCLAISDGPVHNSTGIPFFYMTAKDPAVADLVK 185
Query: 147 NPKCSLLVAR-----------DPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAF 195
NP SL++ DPED +TL G +V + + ++HP
Sbjct: 186 NPTASLVLPESEGEFCRKNIVDPEDPRCARLTLTGRMVTVPPGEVEFAKQAMFSRHPGMR 245
Query: 196 -WVDFGDFQFMRIEPKAV---RYVSGVATALLGSGEFSKEEY 233
W ++ FM++ + + ++ GV+ + +EEY
Sbjct: 246 KWPRQYEWFFMKMWVEHIWLQKWYGGVS-------DIPREEY 280
>sp|O88668|CREG1_MOUSE Protein CREG1 OS=Mus musculus GN=Creg1 PE=2 SV=1
Length = 220
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 24/132 (18%)
Query: 85 RLPPLEE-------IRTVLDRSVRGMLSTFS--QKYEGYPSGSMVDFA----CDADGTPI 131
RLPPL R V S G L+T S ++ G+P ++ + + G P
Sbjct: 45 RLPPLPPREDGPRVARFVTHVSDWGSLATISTIKEVRGWPFADIISISDGPPGEGTGEPY 104
Query: 132 LAVSSLAVHTKDLLANPKCSLLVAR-----------DPEDRTDLVITLHGDATSVAEKDK 180
+ +S L DL NP+ +L ++ DP+ + I + G T V + ++
Sbjct: 105 MYLSPLQQAVSDLQENPEATLTMSLAQTVYCRNHGFDPQSPLCVHIMMSGTVTKVNKTEE 164
Query: 181 AAIRAVYLAKHP 192
R +HP
Sbjct: 165 DYARDSLFVRHP 176
>sp|B9LJF1|RL15_CHLSY 50S ribosomal protein L15 OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=rplO PE=3 SV=1
Length = 170
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 101 RGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPED 160
RG ++ F +YE GS+VD+ D + TP ++ V K + + + D E
Sbjct: 65 RGFVNKFRVEYEVVNVGSLVDWPVDLEVTPETLLARRLVRRK------RMPVKILGDGEL 118
Query: 161 RTDLVITLHGDATSVAEKDKAA 182
LVI H + S +K +AA
Sbjct: 119 TQPLVIKAHKFSASARQKIEAA 140
>sp|A9WH85|RL15_CHLAA 50S ribosomal protein L15 OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=rplO PE=3 SV=1
Length = 170
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 101 RGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPED 160
RG ++ F +YE GS+VD+ D + TP ++ V K + + + D E
Sbjct: 65 RGFVNKFRVEYEVVNVGSLVDWPVDLEVTPETLLARRLVRRK------RMPVKILGDGEL 118
Query: 161 RTDLVITLHGDATSVAEKDKAA 182
LVI H + S +K +AA
Sbjct: 119 TQPLVIKAHKFSASARQKIEAA 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,513,009
Number of Sequences: 539616
Number of extensions: 4570612
Number of successful extensions: 10443
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10441
Number of HSP's gapped (non-prelim): 12
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)