Query 020357
Match_columns 327
No_of_seqs 234 out of 1384
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13883 Pyrid_oxidase_2: Pyri 100.0 4.3E-30 9.4E-35 225.5 13.7 145 86-234 4-169 (170)
2 PF10615 DUF2470: Protein of u 99.9 1E-21 2.2E-26 152.7 7.0 80 238-320 2-83 (83)
3 COG0748 HugZ Putative heme iro 99.8 3.4E-22 7.3E-27 181.6 -1.1 226 91-325 8-240 (245)
4 PRK03467 hypothetical protein; 99.8 4.7E-17 1E-21 138.1 16.1 127 89-221 7-138 (144)
5 KOG3374 Cellular repressor of 99.7 2.7E-16 5.9E-21 135.0 12.2 157 74-235 31-207 (210)
6 TIGR03668 Rv0121_F420 PPOX cla 99.6 1.1E-14 2.4E-19 124.1 15.4 120 90-212 3-137 (141)
7 TIGR03667 Rv3369 PPOX class pr 99.5 1.9E-13 4.1E-18 114.9 14.7 118 89-211 4-129 (130)
8 TIGR03666 Rv2061_F420 PPOX cla 99.5 2.5E-13 5.4E-18 114.6 15.3 112 94-210 7-127 (132)
9 PF01243 Pyridox_oxidase: Pyri 99.5 2.1E-13 4.5E-18 105.5 12.6 86 90-179 3-89 (89)
10 TIGR03618 Rv1155_F420 PPOX cla 99.4 3.7E-12 7.9E-17 104.0 14.3 107 103-213 1-116 (117)
11 PF12900 Pyridox_ox_2: Pyridox 99.3 2.8E-11 6.1E-16 102.9 14.0 119 89-213 2-140 (143)
12 COG3467 Predicted flavin-nucle 99.2 5.3E-10 1.1E-14 97.9 15.3 121 88-212 12-156 (166)
13 PRK05679 pyridoxamine 5'-phosp 99.1 1.9E-09 4.1E-14 96.8 15.6 118 94-217 22-170 (195)
14 COG3787 Uncharacterized protei 99.1 1.2E-09 2.7E-14 89.9 12.4 126 90-221 3-133 (145)
15 COG0748 HugZ Putative heme iro 98.8 5.2E-10 1.1E-14 102.3 -0.5 141 84-233 81-228 (245)
16 COG3871 Uncharacterized stress 98.8 3.4E-08 7.4E-13 83.4 10.1 120 90-216 8-130 (145)
17 TIGR00558 pdxH pyridoxamine-ph 98.8 3.9E-07 8.4E-12 83.2 16.1 117 96-217 46-192 (217)
18 COG5015 Uncharacterized conser 98.6 1.3E-06 2.9E-11 71.4 13.2 115 91-215 3-121 (132)
19 PRK06733 hypothetical protein; 98.4 1.3E-05 2.8E-10 68.9 15.3 110 89-221 10-121 (151)
20 COG0259 PdxH Pyridoxamine-phos 98.4 7.5E-06 1.6E-10 72.9 13.9 134 70-217 25-189 (214)
21 PLN03049 pyridoxine (pyridoxam 98.4 1E-05 2.3E-10 81.6 16.2 116 96-217 286-433 (462)
22 PLN02918 pyridoxine (pyridoxam 98.0 0.00018 3.9E-09 73.7 15.0 116 96-217 368-515 (544)
23 TIGR00026 hi_GC_TIGR00026 deaz 98.0 0.00013 2.8E-09 60.0 11.2 88 99-197 7-100 (113)
24 PF04299 FMN_bind_2: Putative 97.8 0.00057 1.2E-08 60.1 13.8 98 89-189 12-132 (169)
25 PF04075 DUF385: Domain of unk 97.6 0.00084 1.8E-08 56.7 10.4 100 99-209 25-132 (132)
26 KOG2586 Pyridoxamine-phosphate 96.8 0.0028 6.2E-08 56.6 6.3 87 96-192 53-141 (228)
27 PF12766 Pyridox_oxase_2: Pyri 96.8 0.022 4.8E-07 45.8 10.5 75 97-175 18-99 (100)
28 COG2808 PaiB Transcriptional r 96.2 0.041 8.9E-07 49.2 9.6 101 88-191 11-134 (209)
29 COG3576 Predicted flavin-nucle 93.0 0.64 1.4E-05 41.1 8.5 117 91-216 33-153 (173)
30 PF04289 DUF447: Protein of un 79.7 6.3 0.00014 34.7 6.6 53 102-158 3-55 (177)
31 PF10012 DUF2255: Uncharacteri 66.7 73 0.0016 26.3 10.4 88 96-195 6-98 (116)
32 COG4334 Uncharacterized protei 44.4 1.8E+02 0.0039 23.9 8.6 89 90-196 10-107 (131)
33 PF08922 DUF1905: Domain of un 41.2 1E+02 0.0022 23.4 5.9 57 92-154 22-80 (80)
34 PF01613 Flavin_Reduct: Flavin 29.3 85 0.0018 26.2 4.2 55 101-158 8-65 (154)
35 COG2457 Uncharacterized conser 26.9 1.9E+02 0.0041 26.1 6.0 42 116-158 28-69 (199)
36 COG2075 RPL24A Ribosomal prote 23.3 99 0.0021 22.9 2.9 32 117-149 16-47 (66)
37 PRK14891 50S ribosomal protein 22.6 69 0.0015 26.9 2.2 29 120-149 20-48 (131)
No 1
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.97 E-value=4.3e-30 Score=225.45 Aligned_cols=145 Identities=42% Similarity=0.673 Sum_probs=112.3
Q ss_pred CCCHHHHHHHHhcCCeEEEEeecC--CCCCcceEEEeeEE----EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC-
Q 020357 86 LPPLEEIRTVLDRSVRGMLSTFSQ--KYEGYPSGSMVDFA----CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP- 158 (327)
Q Consensus 86 ps~ae~ar~LL~~~~~g~LAT~~~--~~dG~P~~S~v~y~----~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~- 158 (327)
.+.++.||+|++..++|+|+|++. +.+|+|+++++.|+ .+.+|.+||++++++.|++||++||||||+|.+..
T Consensus 4 ~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~~ 83 (170)
T PF13883_consen 4 EEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQG 83 (170)
T ss_dssp T-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGGS
T ss_pred HHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCCC
Confidence 356789999999999999999983 34899999999999 78889999999999999999999999999998865
Q ss_pred --------CCC--cceEEEEEEEEEEecchhHHHHHHHHHHhCCCC-ccccC---CCeEEEEEEEeEEEEEecCcccccC
Q 020357 159 --------EDR--TDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF---GDFQFMRIEPKAVRYVSGVATALLG 224 (327)
Q Consensus 159 --------~~~--~~~rVtl~G~a~~v~d~e~~~l~~~y~~~~P~a-~~~~~---~df~l~rL~p~~v~~v~GFG~a~~~ 224 (327)
++. +++||||.|+++.|++++.+.++++|+++||++ .|.+. +||.||||+|++|+||+|||++
T Consensus 84 ~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~--- 160 (170)
T PF13883_consen 84 GDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGA--- 160 (170)
T ss_dssp SHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS----
T ss_pred CcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCc---
Confidence 122 689999999999999888888999999999999 89998 9999999999999999999999
Q ss_pred CcccChhhhh
Q 020357 225 SGEFSKEEYQ 234 (327)
Q Consensus 225 ~~~v~~~~y~ 234 (327)
+||+.+||.
T Consensus 161 -~~i~~~~Y~ 169 (170)
T PF13883_consen 161 -AWISAEEYY 169 (170)
T ss_dssp -EEE-HHHHH
T ss_pred -eEeCHHHhc
Confidence 999999996
No 2
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.85 E-value=1e-21 Score=152.72 Aligned_cols=80 Identities=38% Similarity=0.662 Sum_probs=66.2
Q ss_pred CCcccc-cchhhhhhhhhcCHHHHHHHHHHhCCCC-CCcEEEEEecCCCcEEEEcccCCeEEEEEcCCCCCCCHhHHHHH
Q 020357 238 VDPIAQ-FSKPVASHMNRDHAEDTRIIVQHSTSIP-VASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKTL 315 (327)
Q Consensus 238 pDpl~~-~~~~ii~HMN~dH~d~l~~~~~~~~~v~-~~~a~~~~iD~~G~~l~~~~~g~~~~~RipF~~pv~~~~~~r~~ 315 (327)
|||++. .+++||+|||+||.|++..||++|++++ +.+|+|++||++||+|++ ++...+||||++|+++++|+|.+
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~~~~e~r~~ 78 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHADDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVTDPEEARDA 78 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-HHHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---SHCCHHHH
T ss_pred cCcccHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCCCHHHHHHH
Confidence 799995 8999999999999999999999999884 689999999999999999 33489999999999999999999
Q ss_pred HHHHH
Q 020357 316 IVEML 320 (327)
Q Consensus 316 Lv~l~ 320 (327)
||+|+
T Consensus 79 lV~ma 83 (83)
T PF10615_consen 79 LVEMA 83 (83)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99996
No 3
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.4e-22 Score=181.64 Aligned_cols=226 Identities=22% Similarity=0.232 Sum_probs=186.7
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC--CCCcceEEEE
Q 020357 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP--EDRTDLVITL 168 (327)
Q Consensus 91 ~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~--~~~~~~rVtl 168 (327)
-++.+++....|.|+|.... +|.|++|.+++..|-+|++.++++.++.|++ +.+|+|+|++....+ ++...+|+++
T Consensus 8 na~~~l~~~~~~~l~~~~~~-~g~p~~sv~~~gid~~g~p~~~~~~~~~h~~-~~~d~r~sil~~~~g~~d~~~~~Rl~~ 85 (245)
T COG0748 8 NARHLLRSARLAALAGLEPV-TGVPFVSVVPVGIDIDGNPLILLSRLFPHTA-DEADPRCSILLGEPGKGDELALPRLTL 85 (245)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CCCceeeeccceeccCCCcceeEeeeccccc-cccChhhhheecCcCcCChhhccchhH
Confidence 47899999999999999754 8999999999999999999999999999999 999999999998877 6678889999
Q ss_pred EEEEEEecchh--HHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEecCcccccCCcccChhhhhcccCCcc-ccc
Q 020357 169 HGDATSVAEKD--KAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPI-AQF 244 (327)
Q Consensus 169 ~G~a~~v~d~e--~~~l~~~y~~~~P~a-~~~~~~df~l~rL~p~~v~~v~GFG~a~~~~~~v~~~~y~~A~pDpl-~~~ 244 (327)
.+.+..++-+. ...+...|..++|.+ .+.+.++|.+|+.++.+.....|++.. + ..+-.+|. ..+. ...
T Consensus 86 e~~afr~~~~sv~lat~~~~g~~~~syAp~~~~~~d~~iyis~~arh~~N~~~~p~-v--s~m~iede----a~a~s~~~ 158 (245)
T COG0748 86 EIEAFRLEFDSVALATLRERGLPRASYAPLYVDDGDYYIYISEIARHARNLGFNPK-V--SVMFIEDE----AKAKSAFA 158 (245)
T ss_pred HHHHHHhccchHHHhhhhhcCCcCCCcCceEecCCceEEEEehHHHHhhccCcCCc-h--hhheecCc----hhhhhHHH
Confidence 99999888653 455666788888888 778889999999999877666666641 1 11222222 2222 344
Q ss_pred chhhhhhhhhcCHHHHHHHHHHhCCCC-CCcEEEEEecCCCcEEEEcccCCeEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 020357 245 SKPVASHMNRDHAEDTRIIVQHSTSIP-VASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKTLIVEMLQAA 323 (327)
Q Consensus 245 ~~~ii~HMN~dH~d~l~~~~~~~~~v~-~~~a~~~~iD~~G~~l~~~~~g~~~~~RipF~~pv~~~~~~r~~Lv~l~~~A 323 (327)
+.+++.|||.||.+....|+..++... ....+|.+||+.|+++.+...++...+|+.|.+++.+.+|.+..|+.|.+.+
T Consensus 159 r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~~~~~d~~~~lV~l~~~~ 238 (245)
T COG0748 159 RKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAYAISGDGRIALVGLAGGP 238 (245)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccchhhccccchhHHHHHHhcCc
Confidence 668999999999999999999998765 3334499999999999997766667999999999999999999999999986
Q ss_pred hc
Q 020357 324 NS 325 (327)
Q Consensus 324 ~~ 325 (327)
+.
T Consensus 239 h~ 240 (245)
T COG0748 239 HG 240 (245)
T ss_pred cc
Confidence 64
No 4
>PRK03467 hypothetical protein; Provisional
Probab=99.75 E-value=4.7e-17 Score=138.11 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=112.3
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCC-CcEEEEecCCchHHHhhhhCCceEEEEeeCC-CCCcceEE
Q 020357 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSLAVHTKDLLANPKCSLLVARDP-EDRTDLVI 166 (327)
Q Consensus 89 ae~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~-G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~-~~~~~~rV 166 (327)
.+.+.++|++++..+|||.+ ++.||+..+.|++|++ -.+||.+++.++|.+++.+||+|+.+|..++ .......|
T Consensus 7 ~~~I~~fl~~~hvltLa~~~---~~~~w~A~cFY~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v~~I~Gv 83 (144)
T PRK03467 7 LTAISRWLAKQHVVTLCVGQ---EGELWCANCFYVFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTVALIRGV 83 (144)
T ss_pred HHHHHHHHHhCcEEEEEEEc---CCCcceEEEEEEEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcchhhceEE
Confidence 45799999999999999996 6889999999999876 4678888899999999999999999999888 45567899
Q ss_pred EEEEEEEEecchhHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEe---cCccc
Q 020357 167 TLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS---GVATA 221 (327)
Q Consensus 167 tl~G~a~~v~d~e~~~l~~~y~~~~P~a~~~~~~df~l~rL~p~~v~~v~---GFG~a 221 (327)
++.|.+..++++|...++++|.+|||.+... ...+|+|++.++++++ |||+.
T Consensus 84 Q~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~~---~~~iw~l~l~~iK~tdN~LGFgkK 138 (144)
T PRK03467 84 QFKGEIRRLEGEESDAARKRYNRRFPVARAL---SAPVWELRLDEIKMTDNTLGFGKK 138 (144)
T ss_pred EEEEEEEecChhHHHHHHHHHHHhCcchhcc---CCceEEEEEEEEEEeccccccccc
Confidence 9999999999887778899999999998433 3469999999999998 99963
No 5
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=99.69 E-value=2.7e-16 Score=135.00 Aligned_cols=157 Identities=19% Similarity=0.315 Sum_probs=134.4
Q ss_pred HHhHHhhhhhcCCCCHHHHHHHHhcCCeEEEEeecCCC--CCcceEEEeeEEEc----CCCcEEEEecCCchHHHhhhhC
Q 020357 74 ELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKY--EGYPSGSMVDFACD----ADGTPILAVSSLAVHTKDLLAN 147 (327)
Q Consensus 74 ~~~~~~~~~~~rps~ae~ar~LL~~~~~g~LAT~~~~~--dG~P~~S~v~y~~d----~~G~~~~~~s~~s~h~rNL~~d 147 (327)
..+|+..+ ..|...|..||-+...+++|+|+|+++.+ .|+|++..+.+.-. +.|.+||+++++.....|+.+|
T Consensus 31 ~~ir~~~~-p~r~d~A~iAR~lvh~~~Wgal~TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd 109 (210)
T KOG3374|consen 31 RIIREYKR-PQRLDHAKIARDLVHRANWGALGTLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKD 109 (210)
T ss_pred hhhhcCCC-CchhhHHHHHHHHhhhcccceeeeeeecccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccC
Confidence 35555553 55667788999999999999999998634 79999999987642 2489999999999999999999
Q ss_pred CceEEEEeeCC---------CCC--cceEEEEEEEEEEecch--hHHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEE
Q 020357 148 PKCSLLVARDP---------EDR--TDLVITLHGDATSVAEK--DKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVR 213 (327)
Q Consensus 148 prvSL~V~~~~---------~~~--~~~rVtl~G~a~~v~d~--e~~~l~~~y~~~~P~a-~~~~~~df~l~rL~p~~v~ 213 (327)
++++|++.+.. ||+ .+.+++|+|++..+++. +.+...+.|..|||+. .|...+.|.|.+|++..|.
T Consensus 110 ~~atL~~s~~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~~~~~~~~~~~alf~rHPem~~w~~~hn~~~~~l~isni~ 189 (210)
T KOG3374|consen 110 NKATLLFSDEQTLRCKEGGKDPMEPTCARSMLSGQVKKMDPSDKSYQPSLDALFRRHPEMINWVKAHNFYLCELEISNIF 189 (210)
T ss_pred CceeEEeeccccchhhcCCCCCCCchhhhheecceEEEeCCcchhhhhhhhhHhhcCHhHcCCccccceEEEEEeeeeEE
Confidence 99999998754 444 78899999999999864 4566678999999999 9999999999999999999
Q ss_pred EEecCcccccCCcccChhhhhc
Q 020357 214 YVSGVATALLGSGEFSKEEYQA 235 (327)
Q Consensus 214 ~v~GFG~a~~~~~~v~~~~y~~ 235 (327)
+.+=||+. +-|+++||-+
T Consensus 190 vld~~ggp----~~vs~~~yy~ 207 (210)
T KOG3374|consen 190 VLDFYGGP----HKVSASDYYA 207 (210)
T ss_pred EEEecCCC----cccCHHHhcc
Confidence 99999988 8899999975
No 6
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.63 E-value=1.1e-14 Score=124.15 Aligned_cols=120 Identities=24% Similarity=0.154 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEc------CCCcEEEEe------cCCchHHHhhhhCCceEEEEeeC
Q 020357 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACD------ADGTPILAV------SSLAVHTKDLLANPKCSLLVARD 157 (327)
Q Consensus 90 e~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d------~~G~~~~~~------s~~s~h~rNL~~dprvSL~V~~~ 157 (327)
++++++|++.++|+|||++ +||.|+.+|+||+++ +++.+||++ .+.+.|.+||++||||+|+|...
T Consensus 3 ~e~~~~L~~~~~~~LaTv~--~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~ 80 (141)
T TIGR03668 3 FEARTRFAQARVARLATVS--PDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRY 80 (141)
T ss_pred HHHHHHHccCCEEEEEEEC--CCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecC
Confidence 5799999999999999998 899999999999998 367788864 35678999999999999998654
Q ss_pred CC-CCcceEEEEEEEEEEecch--hHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEE
Q 020357 158 PE-DRTDLVITLHGDATSVAEK--DKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAV 212 (327)
Q Consensus 158 ~~-~~~~~rVtl~G~a~~v~d~--e~~~l~~~y~~~~P~a~~~~~~df~l~rL~p~~v 212 (327)
++ ......|++.|+++.++++ +...+.+.+.++|+..... ..+..+++|+|+++
T Consensus 81 ~~~~~~~~~v~v~G~a~~~~d~~~e~~~~~~~l~~kY~~~~~~-~~~~~vi~i~~~r~ 137 (141)
T TIGR03668 81 DDDWTRLWWVRADGRAEILRPGEEEHAAAVRLLRAKYHQYQAV-PLEGPVIAIRVERW 137 (141)
T ss_pred CCCccceEEEEEEEEEEEecCCchhhHHHHHHHHHHhHhhhhc-CCCCcEEEEEEEEE
Confidence 42 2233569999999999864 4445556666666542111 12378899999975
No 7
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.54 E-value=1.9e-13 Score=114.87 Aligned_cols=118 Identities=22% Similarity=0.218 Sum_probs=93.7
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEE
Q 020357 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 168 (327)
Q Consensus 89 ae~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl 168 (327)
.++++++|++..++.|+|++ .||.|++.+++|.++ +|.++|++...+.|.+||++||+|+|++..++... ..+.+
T Consensus 4 ~~~~~~~L~~~~~~~LaT~~--~dG~P~~~P~~~~~~-d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~~--~~v~v 78 (130)
T TIGR03667 4 TAKVARRLREESIVWLTTVR--RSGQPQPVPVWFLWD-GTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRGG--DVVVF 78 (130)
T ss_pred CHHHHHHhcCCCeEEEEEEC--CCCceEEEEEEEEEE-CCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCCc--eEEEE
Confidence 35899999999999999998 799999999999997 68899999999999999999999999997755222 36899
Q ss_pred EEEEEEecchhHHHHHHHHHHhCCCC--cc-c-----cCCCeEEEEEEEeE
Q 020357 169 HGDATSVAEKDKAAIRAVYLAKHPNA--FW-V-----DFGDFQFMRIEPKA 211 (327)
Q Consensus 169 ~G~a~~v~d~e~~~l~~~y~~~~P~a--~~-~-----~~~df~l~rL~p~~ 211 (327)
.|+++.+++.+.....+.|.++|+.. .+ . ..+...++||+|++
T Consensus 79 ~G~a~i~~d~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T TIGR03667 79 TGTAEVVADAPPAREIPAYLAKYREDAARIGMTPERFAADYSVPLRVTPER 129 (130)
T ss_pred EEEEEEeCCchhHHHHHHHHHHhhHHHhcCCCChhHhhhccceeEEEeccc
Confidence 99999998764333445566666653 11 1 22335699999975
No 8
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.54 E-value=2.5e-13 Score=114.59 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=91.9
Q ss_pred HHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEE
Q 020357 94 TVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (327)
Q Consensus 94 ~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~a~ 173 (327)
..|++++.++|+|++ .||.|+.+++||+++ +|.+||+++..++|.+||++||+|+|++.+.... ...+++.|+++
T Consensus 7 ~~L~~~~~~~LaT~~--~dG~P~~~Pv~~~~d-~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~--~~~v~v~G~A~ 81 (132)
T TIGR03666 7 ADLARARYALLTTFR--KDGTPVPTPVWAAVD-GDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGR--PTGPVVPGRAR 81 (132)
T ss_pred HHhccCcEEEEEEEC--CCCcEEEEEEEEEEE-CCEEEEEECCcCHHHHHHHhCCCEEEEEECCCCC--EeEEEEEEEEE
Confidence 568899999999998 899999999999998 5899999999999999999999999998775532 24699999999
Q ss_pred EecchhHHHHHHHHHHhCCCC--cc-----c--cCCCeEEEEEEEe
Q 020357 174 SVAEKDKAAIRAVYLAKHPNA--FW-----V--DFGDFQFMRIEPK 210 (327)
Q Consensus 174 ~v~d~e~~~l~~~y~~~~P~a--~~-----~--~~~df~l~rL~p~ 210 (327)
.++++|...+.+++.++|+.. .+ . ..+.+..++|+|+
T Consensus 82 ~v~~~e~~~~~~~l~~kY~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 127 (132)
T TIGR03666 82 ILDGAETARARDLLARRYGLQGRLFPLFSKLRRGRDRNVGLELTPA 127 (132)
T ss_pred EEcchhHHHHHHHHHHHcCChhhhhhhHHHhhccCCCceEEEEEec
Confidence 997777777778888888875 22 1 2335667788775
No 9
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.52 E-value=2.1e-13 Score=105.55 Aligned_cols=86 Identities=30% Similarity=0.397 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCC-cEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEE
Q 020357 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 168 (327)
Q Consensus 90 e~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G-~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl 168 (327)
++++++|++.+.++|||++ .||.|++++++|..+.+. .+||.+...+.|++||++||+|+|++.+++ .....+++
T Consensus 3 ~~~~~~l~~~~~~~laTv~--~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~--~~~~~v~~ 78 (89)
T PF01243_consen 3 EEIREFLEESKYCVLATVD--EDGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPE--GTRRGVRV 78 (89)
T ss_dssp HHHHHHHHSTSEEEEEEEE--TTSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETT--TTTEEEEE
T ss_pred HHHHHHhcCCCEEEEEEEC--CCCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcC--cCceEEEE
Confidence 6899999999999999998 799999999999987554 699999999999999999999999999987 34468999
Q ss_pred EEEEEEecchh
Q 020357 169 HGDATSVAEKD 179 (327)
Q Consensus 169 ~G~a~~v~d~e 179 (327)
.|+|+.++++|
T Consensus 79 ~G~a~~~~d~E 89 (89)
T PF01243_consen 79 SGTAEILTDEE 89 (89)
T ss_dssp EEEEEEESHHH
T ss_pred EEEEEEEcCCC
Confidence 99999999865
No 10
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.44 E-value=3.7e-12 Score=104.00 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=83.7
Q ss_pred EEEeecCCCCCcceEEEeeEEEcC-CCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEEecch-hH
Q 020357 103 MLSTFSQKYEGYPSGSMVDFACDA-DGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEK-DK 180 (327)
Q Consensus 103 ~LAT~~~~~dG~P~~S~v~y~~d~-~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~a~~v~d~-e~ 180 (327)
+|+|++ .+|.|++++++|+++. ++.+||+++..++|++||++||+|+|++..++... .++++.|+++.++++ +.
T Consensus 1 ~LaTv~--~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~--~~v~i~G~a~~v~d~~~~ 76 (117)
T TIGR03618 1 VLATIR--ADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFPY--RYVEVEGTAELVEDPDPV 76 (117)
T ss_pred CEEEEC--CCCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCCc--cEEEEEEEEEEecCCccc
Confidence 589997 7999999999999843 45699999999999999999999999999877432 479999999999874 44
Q ss_pred HHHHHHHHHhCCCC----ccc---cCCCeEEEEEEEeEEE
Q 020357 181 AAIRAVYLAKHPNA----FWV---DFGDFQFMRIEPKAVR 213 (327)
Q Consensus 181 ~~l~~~y~~~~P~a----~~~---~~~df~l~rL~p~~v~ 213 (327)
+.+.+++.++|... .|. +.++..+++|+|+++.
T Consensus 77 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~l~i~p~~~~ 116 (117)
T TIGR03618 77 RDLVDRLAERYRGAAGEDEYRRPMVDPRRVVVRVTPTRVY 116 (117)
T ss_pred HHHHHHHHHHHcccccchhcccccCCCCEEEEEEEEEEec
Confidence 55666666666332 122 2356789999999863
No 11
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=99.34 E-value=2.8e-11 Score=102.90 Aligned_cols=119 Identities=25% Similarity=0.358 Sum_probs=93.4
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC----CC----
Q 020357 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP----ED---- 160 (327)
Q Consensus 89 ae~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~----~~---- 160 (327)
.+++.++|++..+|+||+++ +|.||..|++|+++ +|.+||+++..+++.++|+++| |++++...+ ..
T Consensus 2 ~~e~~~iL~~~~~g~la~~~---~~~Py~vP~~f~~~-~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~ 76 (143)
T PF12900_consen 2 REEIWEILDRAPVGRLAFVD---DGYPYIVPVNFVYD-GGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACS 76 (143)
T ss_dssp HHHHHHHHHH-SEEEEEEEE---TTEEEEEEEEEEEE-TTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGG
T ss_pred HHHHHHHHhhCCEEEEEEEe---CCEEEEEEEEEEEE-CCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCc
Confidence 46899999999999999997 79999999999999 6899999999999999999888 999988733 11
Q ss_pred --CcceEEEEEEEEEEecch-hHHHHHHHHHHhC-CCCccc--------cCCCeEEEEEEEeEEE
Q 020357 161 --RTDLVITLHGDATSVAEK-DKAAIRAVYLAKH-PNAFWV--------DFGDFQFMRIEPKAVR 213 (327)
Q Consensus 161 --~~~~rVtl~G~a~~v~d~-e~~~l~~~y~~~~-P~a~~~--------~~~df~l~rL~p~~v~ 213 (327)
.....|++.|+++.|+++ |..++...+.+++ |+. |. ......+|||+|+++.
T Consensus 77 ~~~~y~SVi~~G~~~~v~d~~ek~~al~~l~~~~~p~~-~~~~~~~~~~~~~~~~v~ri~i~~~s 140 (143)
T PF12900_consen 77 FSMNYRSVIVFGRAEEVEDEEEKAEALRALLEKYAPGR-WDEIRPFADKELKRTAVYRIDIEELS 140 (143)
T ss_dssp EEEEEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHSTTT-CCCSC---HHHHHTEEEEEEEEEEEE
T ss_pred CcceEEEEEEEEEEEEeCCHHHHHHHHHHHHHhccCCC-cccccccchhhhcCeEEEEEEeEEEE
Confidence 135789999999999764 5555666666555 432 21 1235799999999863
No 12
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=99.21 E-value=5.3e-10 Score=97.90 Aligned_cols=121 Identities=23% Similarity=0.267 Sum_probs=93.6
Q ss_pred CHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC---------
Q 020357 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP--------- 158 (327)
Q Consensus 88 ~ae~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~--------- 158 (327)
..+++..+|+.+.+|.||+.+ +|.||+.|+.|++++ |.+|++.+..++|...|+.||.|+|.+.+..
T Consensus 12 ~~~~i~~~l~~~~~~~La~~~---~~~PyivP~~y~~~~-~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~~ 87 (166)
T COG3467 12 SDEEIDAILAAGRVGRLAFAG---DGQPYVVPLNYGYEG-GHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPFN 87 (166)
T ss_pred CHHHHHHHHhhCCEEEEEEcC---CCCcEEEEeEeEEeC-CeEEEEeCCcchhhHHhhcCCcEEEEEEccccceeccccc
Confidence 457899999999999999997 788999999999984 6799999999999999999999999998766
Q ss_pred CCCcceEEEEEEEEEEecch-hHHHHH----HHHHHhCCCC--c----cc----cCCCeEEEEEEEeEE
Q 020357 159 EDRTDLVITLHGDATSVAEK-DKAAIR----AVYLAKHPNA--F----WV----DFGDFQFMRIEPKAV 212 (327)
Q Consensus 159 ~~~~~~rVtl~G~a~~v~d~-e~~~l~----~~y~~~~P~a--~----~~----~~~df~l~rL~p~~v 212 (327)
.......|.++|+++++++. +...+. +.+.+.+++. . .. ......+|++.++.+
T Consensus 88 ~s~~y~SVvv~G~~~~l~~~~~k~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (166)
T COG3467 88 SSRNYRSVVVFGRAEELSDLEEKAAALDHAWSLLMKGRPNWWEPGGRKEVPETVDSSPHSFFRIKIDEI 156 (166)
T ss_pred CCcceEEEEEEeEEEEcCChHHHHHHHHHHHHHhcccCcCcCCCCCccccccccccccceEEEEEccee
Confidence 34567899999999999975 444444 4444434443 1 11 222356777776643
No 13
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=99.14 E-value=1.9e-09 Score=96.77 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=86.7
Q ss_pred HHHhcCCeEEEEeecCCCCCcceEEEeeEE-EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEE
Q 020357 94 TVLDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDA 172 (327)
Q Consensus 94 ~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~-~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~a 172 (327)
.-+...+.++|||++ .||.|.+..|.+- ++++| ++|++...++|+++|++||+|+|++..+. ....|.|.|.+
T Consensus 22 ~~~~~~~~~~lATv~--~dG~P~~R~V~lr~~~~~~-l~f~T~~~S~K~~~l~~np~val~~~~~~---~~~qvrv~G~a 95 (195)
T PRK05679 22 AELNDPNAMTLATVD--EDGRPSQRIVLLKGFDERG-FVFYTNYESRKGRQLAANPKAALLFPWKS---LERQVRVEGRV 95 (195)
T ss_pred cCCCCCceEEEEeeC--CCCCEEEEEEEEEEECCCe-EEEEeCCCCHHHHHHhhCCcEEEEEecCC---CCEEEEEEEEE
Confidence 345677889999998 7999999999984 67665 99999999999999999999999998764 23479999999
Q ss_pred EEecchhHHHHHH------------------------------HHHHhCCCCccccCCCeEEEEEEEeEEEEEec
Q 020357 173 TSVAEKDKAAIRA------------------------------VYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 173 ~~v~d~e~~~l~~------------------------------~y~~~~P~a~~~~~~df~l~rL~p~~v~~v~G 217 (327)
+.+++++..+.-+ .+..+++.......+.|.+|+|.|+++-|..+
T Consensus 96 ~~~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~f~~~~l~p~~veflql 170 (195)
T PRK05679 96 EKVSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQGEVPRPPHWGGYRVVPESIEFWQG 170 (195)
T ss_pred EEeCHHHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccCCCCCCCCccEEEEEECCEEEEcCC
Confidence 9988753211111 11111111111223569999999999988765
No 14
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.12 E-value=1.2e-09 Score=89.93 Aligned_cols=126 Identities=14% Similarity=0.121 Sum_probs=107.8
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCC-CcEEEEecCCchHHHhhhhCCceEEEEeeCCC-CCcceEEE
Q 020357 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSLAVHTKDLLANPKCSLLVARDPE-DRTDLVIT 167 (327)
Q Consensus 90 e~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~-G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~-~~~~~rVt 167 (327)
+++-++|++.+..+++... +|.||+....|++|+. -.+|+++....+|.+-+..|++|..+|..+.. ......|+
T Consensus 3 ~rI~~flkkq~v~Tw~~~~---e~~~w~asafYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQ 79 (145)
T COG3787 3 TRISRFLKKQHVLTWCVQQ---EGELWCASAFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQ 79 (145)
T ss_pred hHHHHHHHhhheeeeeeec---CCceeeeeeEEEEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeeeeeee
Confidence 4688999999999999985 7999999999999975 45777677788999999999999999998874 23457899
Q ss_pred EEEEEEEecchhHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEe---cCccc
Q 020357 168 LHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS---GVATA 221 (327)
Q Consensus 168 l~G~a~~v~d~e~~~l~~~y~~~~P~a~~~~~~df~l~rL~p~~v~~v~---GFG~a 221 (327)
+.|....+++++.+.++.+|..+||.+.... -.+|.|+++++++++ |||+.
T Consensus 80 fkge~~~l~~~q~~~Ark~Y~~rfp~akvd~---a~vwqleL~~ikftdNaLG~~kk 133 (145)
T COG3787 80 FKGEISRLSGEQSDAARKAYNRRFPVAKVDS---APVWQLELDEIKFTDNALGFGKK 133 (145)
T ss_pred eeeeehhhhcchHHHHHHHHhccCchhhccc---CceEEeeeeeEEeecccccccce
Confidence 9999999999888899999999999874432 468999999999995 89963
No 15
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.82 E-value=5.2e-10 Score=102.33 Aligned_cols=141 Identities=23% Similarity=0.267 Sum_probs=111.5
Q ss_pred cCCCCHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC-CC--
Q 020357 84 ARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP-ED-- 160 (327)
Q Consensus 84 ~rps~ae~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~-~~-- 160 (327)
.|+++ +++.+........|+|++ .+|.|-+|..++.++ ++.+||+.+..++|.+|+..+|.||+++.+++ ..
T Consensus 81 ~Rl~~--e~~afr~~~~sv~lat~~--~~g~~~~syAp~~~~-~~d~~iyis~~arh~~N~~~~p~vs~m~iedea~a~s 155 (245)
T COG0748 81 PRLTL--EIEAFRLEFDSVALATLR--ERGLPRASYAPLYVD-DGDYYIYISEIARHARNLGFNPKVSVMFIEDEAKAKS 155 (245)
T ss_pred cchhH--HHHHHHhccchHHHhhhh--hcCCcCCCcCceEec-CCceEEEEehHHHHhhccCcCCchhhheecCchhhhh
Confidence 34444 789999999999999998 899999999999998 56799999999999999999999999998887 22
Q ss_pred -CcceEEEEEEEEEEecc-hhHHHHHHHHHHhCCC-C-ccccCCCeEEEEEEEeEEEEEecCcccccCCcccChhhh
Q 020357 161 -RTDLVITLHGDATSVAE-KDKAAIRAVYLAKHPN-A-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEY 233 (327)
Q Consensus 161 -~~~~rVtl~G~a~~v~d-~e~~~l~~~y~~~~P~-a-~~~~~~df~l~rL~p~~v~~v~GFG~a~~~~~~v~~~~y 233 (327)
..+.|++....+..++- +.+..+......++.+ . .....++|.++.++|.+..++.|||++ +.++.+.-
T Consensus 156 ~~~r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa----~~~~~d~~ 228 (245)
T COG0748 156 AFARKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQA----YAISGDGR 228 (245)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccchh----hccccchh
Confidence 25567777666666654 2344455555556665 3 455678999999999999999999999 55655443
No 16
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=98.81 E-value=3.4e-08 Score=83.44 Aligned_cols=120 Identities=22% Similarity=0.359 Sum_probs=92.6
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCC-CcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEE
Q 020357 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 168 (327)
Q Consensus 90 e~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~-G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl 168 (327)
..+..+++....|+|+|+. .+|.|+.-++.|--|+. |.+||.++..++++..|+.||+|++++..+.. ...|.+
T Consensus 8 ~~~~~~~e~~kv~~l~tv~--~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~---~~fv~v 82 (145)
T COG3871 8 QALAELLEGSKVGMLATVQ--ENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDH---DAFVEV 82 (145)
T ss_pred HHHHHHHhhCceEEEEEec--CCCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCC---cceEEE
Confidence 4678899999999999998 68899999998554432 89999999999999999999999999988773 347999
Q ss_pred EEEEEEecchhH-HHH-HHHHHHhCCCCccccCCCeEEEEEEEeEEEEEe
Q 020357 169 HGDATSVAEKDK-AAI-RAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS 216 (327)
Q Consensus 169 ~G~a~~v~d~e~-~~l-~~~y~~~~P~a~~~~~~df~l~rL~p~~v~~v~ 216 (327)
.|+++.++|... +++ ...+..-||.. .+-|++.+++|+|+++.|..
T Consensus 83 ~Gtael~~dra~~d~~W~~~~~~wFe~G--kedP~l~~Lkv~~e~i~yw~ 130 (145)
T COG3871 83 SGTAELVEDRAKIDELWTSVLEAWFEQG--KEDPDLTMLKVTAEDIDYWN 130 (145)
T ss_pred EEEEEeeccHHHHHHhhhhhHHHHHhcC--CCCCCeEEEEEchhHhHHHh
Confidence 999999998532 111 11111222221 24578999999999998864
No 17
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=98.76 E-value=3.9e-07 Score=83.20 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=83.9
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEEe
Q 020357 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSV 175 (327)
Q Consensus 96 L~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~a~~v 175 (327)
+...+.++|+|++ .+|.|.+-+|.+-...++.++|++...++|.++|++||+|+|++..+. ....|.|.|+++.+
T Consensus 46 ~~~~~~~~LaTvd--~~G~P~~R~v~lr~~~~~~l~F~T~~~S~K~~eL~~np~v~l~f~~~~---~~~qvrv~G~a~~~ 120 (217)
T TIGR00558 46 LTEPNAMTLSTVD--ESGRPSSRMVLLKELDERGFVFYTNYGSRKGHQIETNPNAALVFFWPD---LERQVRVEGKVEKL 120 (217)
T ss_pred CCCCceEEEEEEC--CCCCEEEEEEEEEEECCCcEEEEECCCChHHHHHHhCCcEEEEEEeCC---CCEEEEEEEEEEEC
Confidence 4566789999998 789999998887443344599999999999999999999999998765 24579999999998
Q ss_pred cchhHHHH---------------------------HHH---HHHhCCCCccccCCCeEEEEEEEeEEEEEec
Q 020357 176 AEKDKAAI---------------------------RAV---YLAKHPNAFWVDFGDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 176 ~d~e~~~l---------------------------~~~---y~~~~P~a~~~~~~df~l~rL~p~~v~~v~G 217 (327)
++++.... ... +..++++......+.|.+|+|.|+++-|..+
T Consensus 121 ~~~~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~~p~p~~f~~~~l~p~~vEf~~l 192 (217)
T TIGR00558 121 PREESDAYFKSRPRGSRIGAWASRQSDVISNREELESKALKNTEKFEDAEIPRPDYWGGYRVVPEEIEFWQG 192 (217)
T ss_pred CHHHHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHHHhhccCCCCCCCCceEEEEEECCEEEEccC
Confidence 76532111 111 1111221111223468999999999988754
No 18
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.3e-06 Score=71.40 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=92.9
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEE
Q 020357 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHG 170 (327)
Q Consensus 91 ~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G 170 (327)
++.++|+.+..+.|||+. +|.|-.-+..+.+..++.+||++.....-++.|++||.|+++-.+-+. ..|.|+|
T Consensus 3 d~leFLken~~~~laTve---~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kdg----~~vrlrg 75 (132)
T COG5015 3 DPLEFLKENKSVALATVE---DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKDG----VMVRLRG 75 (132)
T ss_pred cHHHHHHhCCcEEEEEcc---CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCCc----eEEEEee
Confidence 467899999999999995 899998888888877789999888888889999999999998766542 3567999
Q ss_pred EEEEecchhHHHHHHHHHHhCCCC--ccc--cCCCeEEEEEEEeEEEEE
Q 020357 171 DATSVAEKDKAAIRAVYLAKHPNA--FWV--DFGDFQFMRIEPKAVRYV 215 (327)
Q Consensus 171 ~a~~v~d~e~~~l~~~y~~~~P~a--~~~--~~~df~l~rL~p~~v~~v 215 (327)
+++.+++-+ +..+.++.+|.. .|. +.+-|.++.++..++...
T Consensus 76 ~a~f~~nie---lkk~ale~yP~Lkeiy~tddnpifevfyld~~e~~m~ 121 (132)
T COG5015 76 RAEFVENIE---LKKLALEIYPVLKEIYPTDDNPIFEVFYLDSGEGEMY 121 (132)
T ss_pred eEEeccchH---HHHHHhhhchhhHhhccCCCCCEEEEEEEeeccEEEE
Confidence 999998754 566677888987 443 456788998887666543
No 19
>PRK06733 hypothetical protein; Provisional
Probab=98.43 E-value=1.3e-05 Score=68.93 Aligned_cols=110 Identities=16% Similarity=0.226 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEE--EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEE
Q 020357 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA--CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVI 166 (327)
Q Consensus 89 ae~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~--~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rV 166 (327)
.++..++|+.....+|+|++ +.+|.|+.+++..+ .| +..+.|.....+.-.+||++||+++|.+.+++. ..
T Consensus 10 t~el~~~L~~~~~~~laTv~-kedG~Pnv~~Iswv~a~d-~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~~-----~y 82 (151)
T PRK06733 10 TEDLVQLLRKERIVTLATTD-FEKQVPNVSAISWVYAVS-KTSIRFAVDQRSRIVENIRHNPGVVLTIIANES-----VY 82 (151)
T ss_pred CHHHHHHHcCCceEEEEEEc-cCCCceeEEEEEEEEEcC-CCEEEEEEccCcHhHHHHhhCCcEEEEEEeCCc-----EE
Confidence 46899999999999999997 13899999998854 45 468999889999999999999999999998762 36
Q ss_pred EEEEEEEEecchhHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEecCccc
Q 020357 167 TLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATA 221 (327)
Q Consensus 167 tl~G~a~~v~d~e~~~l~~~y~~~~P~a~~~~~~df~l~rL~p~~v~~v~GFG~a 221 (327)
++.|.++.+.+. +. ..| -..+++++++++|+=+-=.|..
T Consensus 83 qIkG~a~i~~e~----ie-----~vp-------lk~s~vei~I~eVrdv~FyGa~ 121 (151)
T PRK06733 83 SISGAAEILTDR----ME-----GVP-------LKLALIEVNVEEVRDVMFYGAK 121 (151)
T ss_pred EEEEEEEEEeee----cc-----ccc-------ceEEEEEEEEEEEEEeeeccce
Confidence 999999988743 11 111 1378999999999887656644
No 20
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=98.41 E-value=7.5e-06 Score=72.93 Aligned_cols=134 Identities=22% Similarity=0.293 Sum_probs=96.3
Q ss_pred hHHHHHhHHhhhhhcCCCCHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEE-EcCCCcEEEEecCCchHHHhhhhCC
Q 020357 70 ANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANP 148 (327)
Q Consensus 70 ~~~~~~~~~~~~~~~rps~ae~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~-~d~~G~~~~~~s~~s~h~rNL~~dp 148 (327)
++=|.+|++--+++.+ .=+...+..+|||++ .+|.|.+-+|-.- +|+.| ++|++.-.|+|.+.|.+||
T Consensus 25 ~~P~~lF~~Wl~eA~~--------~~~~ePnAm~lATvd--~~G~P~~R~VLLK~~DerG-fvFyTN~~S~Kg~eLa~np 93 (214)
T COG0259 25 ANPLTLFRRWLEEAIR--------AEVNEPNAMTLATVD--EQGRPSSRIVLLKELDERG-FVFYTNYGSRKGRELAANP 93 (214)
T ss_pred cCHHHHHHHHHHHHHh--------cccCCCceeEEEeec--CCCCceeeEEEecccCCCc-EEEEeccCCcchhhHhhCc
Confidence 4556777776654442 227788899999998 7999999887654 45555 7888999999999999999
Q ss_pred ceEEEEeeCCCCCcceEEEEEEEEEEecchhH------------------------------HHHHHHHHHhCCCCcccc
Q 020357 149 KCSLLVARDPEDRTDLVITLHGDATSVAEKDK------------------------------AAIRAVYLAKHPNAFWVD 198 (327)
Q Consensus 149 rvSL~V~~~~~~~~~~rVtl~G~a~~v~d~e~------------------------------~~l~~~y~~~~P~a~~~~ 198 (327)
++++++.-.+ -...|.|.|.++.|.++|. +.....|.++|+.....-
T Consensus 94 ~Aal~F~W~~---L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~ 170 (214)
T COG0259 94 YAALLFPWKE---LERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGEIPR 170 (214)
T ss_pred ceeEEecchh---ccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999996544 1236899999999987542 112234445555543222
Q ss_pred CCCeEEEEEEEeEEEEEec
Q 020357 199 FGDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 199 ~~df~l~rL~p~~v~~v~G 217 (327)
.+...-|||.|++|-|-.|
T Consensus 171 P~~WgG~ri~p~~iEFWqg 189 (214)
T COG0259 171 PPHWGGFRIVPESIEFWQG 189 (214)
T ss_pred CCCccceEeeeeEEEEecC
Confidence 3345789999999988865
No 21
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=98.39 E-value=1e-05 Score=81.57 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=84.4
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeeE-EEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 020357 96 LDRSVRGMLSTFSQKYEGYPSGSMVDF-ACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (327)
Q Consensus 96 L~~~~~g~LAT~~~~~dG~P~~S~v~y-~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~a~~ 174 (327)
+...+.++|||++ .+|.|.+-.|-+ .+|++| ++|++.-.|+|.++|.+||+|+|++..+. ....|.|.|.++.
T Consensus 286 ~~ep~am~LATvd--~~G~P~~R~VlLk~~d~~g-~~F~Tn~~S~K~~eL~~Np~aal~F~w~~---~~rQvRv~G~a~~ 359 (462)
T PLN03049 286 LREPNAMTLATAG--EDGRPSARIVLLKGVDKRG-FVWYTNYDSRKAHELSANPKASLVFYWDG---LHRQVRVEGSVEK 359 (462)
T ss_pred CCCCCeeEEEEEC--CCCCeeEEEEEEeEEcCCc-EEEEECCCCHHHHHHhhCCcEEEEeecCC---CCEEEEEEEEEEE
Confidence 5677899999998 799999987755 356565 68889999999999999999999998765 2347999999999
Q ss_pred ecchhHHHH------------------------------HHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEec
Q 020357 175 VAEKDKAAI------------------------------RAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 175 v~d~e~~~l------------------------------~~~y~~~~P~a-~~~~~~df~l~rL~p~~v~~v~G 217 (327)
+++++.++. ...+..+|++. .....+.|..|+|.|+++-|..|
T Consensus 360 ~~~~~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~~~p~p~~w~g~~v~p~~iEfwq~ 433 (462)
T PLN03049 360 VSEEESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPKHWGGYRLKPELIEFWQG 433 (462)
T ss_pred CCHHHHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCCCCCCCCceEEEEEEeeEEEEccC
Confidence 985432110 11122233221 12233468999999999988765
No 22
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=97.97 E-value=0.00018 Score=73.71 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=83.9
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeeEE-EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 020357 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (327)
Q Consensus 96 L~~~~~g~LAT~~~~~dG~P~~S~v~y~-~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~a~~ 174 (327)
+...+.++|||++ .+|.|.+-.|-+- +|++| ++|++.-.|+|.+.|++||+|++++...+ ....|.|.|.++.
T Consensus 368 ~~eP~Am~LATv~--~~G~P~~RtVlLk~~d~~g-~~F~Tn~~S~K~~el~~Np~aal~F~w~~---l~rQVRi~G~v~~ 441 (544)
T PLN02918 368 LREPNAMALSTAN--KDGKPSSRMVLLKGVDKNG-FVWYTNYESQKGSDLSENPSAALLFYWEE---LNRQVRVEGSVQK 441 (544)
T ss_pred CCCCccceEEeeC--CCCCeeeEEEEEeEEcCCc-eEEEECCCChhHHHHHhCCcEEEEeeecc---ccEEEEEEEEEEE
Confidence 3466789999998 7999999777653 46555 66889999999999999999999998765 2346899999999
Q ss_pred ecchhHH---------------------------HH---HHHHHHhCCCCc-cccCCCeEEEEEEEeEEEEEec
Q 020357 175 VAEKDKA---------------------------AI---RAVYLAKHPNAF-WVDFGDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 175 v~d~e~~---------------------------~l---~~~y~~~~P~a~-~~~~~df~l~rL~p~~v~~v~G 217 (327)
+++++.+ .+ .+.+.+++++.. ..-.+.+.-|+|.|+++.|..|
T Consensus 442 ~~~~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~~WgGy~v~P~~iEFWQg 515 (544)
T PLN02918 442 VPESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKNWGGYRLKPNLFEFWQG 515 (544)
T ss_pred CCHHHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEecCEEEECCC
Confidence 8765321 11 122233333321 2223457889999999998876
No 23
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=97.96 E-value=0.00013 Score=59.95 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=69.0
Q ss_pred CCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecC-----CchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEE
Q 020357 99 SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSS-----LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (327)
Q Consensus 99 ~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~-----~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~a~ 173 (327)
...+.|.|.+. ..|.|+.++++|..++ |.+|+..|. .+..++||++||+|++.+.. -+..+.++
T Consensus 7 ~p~~lL~t~GR-kSG~~r~tpl~~~~~~-~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~g---------~~~~~~ar 75 (113)
T TIGR00026 7 LPVLLLTTTGR-KSGKPRTTPVTYVRHD-PGVLIVASNGGAPRHPDWYKNLKANPRVRVRVGG---------KTFVATAR 75 (113)
T ss_pred CCEEEEEECCC-CCCcEEEEEEEEEEEC-CEEEEEEecCCCCCCCHHHHHhhhCCcEEEEECC---------EEEEEEEE
Confidence 35778888853 6799999999999985 556665443 24569999999999998711 25789999
Q ss_pred EecchhHHHHHHHHHHhCCCC-ccc
Q 020357 174 SVAEKDKAAIRAVYLAKHPNA-FWV 197 (327)
Q Consensus 174 ~v~d~e~~~l~~~y~~~~P~a-~~~ 197 (327)
.++++|.+++...|.+++|.. .|.
T Consensus 76 ~v~~~e~~~~~~~~~~~~p~~~~yq 100 (113)
T TIGR00026 76 LVSGDERDQLWAGVVRLYPRYGRYQ 100 (113)
T ss_pred ECCchhHHHHHHHHHHHCcCHHHHH
Confidence 999988888999999999975 554
No 24
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=97.84 E-value=0.00057 Score=60.10 Aligned_cols=98 Identities=17% Similarity=0.101 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcC----CCcEEEEecCCchHHHhhhhCCceEEEEeeCC-----C
Q 020357 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDA----DGTPILAVSSLAVHTKDLLANPKCSLLVARDP-----E 159 (327)
Q Consensus 89 ae~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~----~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~-----~ 159 (327)
.+++++|+++..+|+|.|.+ +|.|.+|.++|.++. .|.++.+++..-++.+.+..+..|-+.+..+. +
T Consensus 12 ~~~l~~~i~~~pfa~Lvt~~---~~~~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISPs 88 (169)
T PF04299_consen 12 PEELRAFIRAHPFATLVTNG---DGGPVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISPS 88 (169)
T ss_dssp HCHHHHHHHHS-EEEEEEEE---TTEEEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHhCCcEEEEEcC---CCCcceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECch
Confidence 45789999999999999976 677999999999984 57788888888899999988888877776643 2
Q ss_pred CC-------------cceEEEEEEEEEEecch-hHHHHHHHHHH
Q 020357 160 DR-------------TDLVITLHGDATSVAEK-DKAAIRAVYLA 189 (327)
Q Consensus 160 ~~-------------~~~rVtl~G~a~~v~d~-e~~~l~~~y~~ 189 (327)
++ .+..|.+.|+++.++|+ +..+..++..+
T Consensus 89 WYp~k~~~~~~VPTWNY~aVh~~G~~~~~~d~~~~~~~l~~l~~ 132 (169)
T PF04299_consen 89 WYPTKAEHGKVVPTWNYAAVHAYGTVRIIDDPDWLRAHLDRLTA 132 (169)
T ss_dssp CS----STTS---EEEEEEEEEEEEEEE---HHHHHHHHHHHHH
T ss_pred hhcccCcCCCCCCCcCEEEEEEEEEEEEEeCHHHHHHHHHHHHH
Confidence 22 57889999999999654 44333333333
No 25
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=97.57 E-value=0.00084 Score=56.66 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=69.7
Q ss_pred CCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecC-----CchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEE
Q 020357 99 SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSS-----LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (327)
Q Consensus 99 ~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~-----~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~a~ 173 (327)
...+.|.|.+. ..|.|+.+++.|..++ |++|+..+. ...-++||+++|.|.+.+. +-+..+.++
T Consensus 25 ~~~~lLtt~GR-kSG~~r~tpl~~~~~g-~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~---------g~~~~~~a~ 93 (132)
T PF04075_consen 25 MPVLLLTTTGR-KSGRPRRTPLVYVRDG-GRLVVVASNGGAPRHPDWYRNLRANPEVTVEVG---------GRRRRVRAR 93 (132)
T ss_dssp EEEEEEEEE-T-TT-SEEEEEEEEEEET-TEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEET---------TEEEEEEEE
T ss_pred CcEEEEEECCC-CCCCeEEEEEEEEEeC-CEEEEEEccCCCCCCChhHHhhhhCCcEEEEEC---------CEEEEEEEE
Confidence 34788888863 5799999999999884 567776663 3566999999999988871 236778889
Q ss_pred EecchhHHHHHHHHHHhCCCC-cccc--CCCeEEEEEEE
Q 020357 174 SVAEKDKAAIRAVYLAKHPNA-FWVD--FGDFQFMRIEP 209 (327)
Q Consensus 174 ~v~d~e~~~l~~~y~~~~P~a-~~~~--~~df~l~rL~p 209 (327)
.++++|..++.+.+.+.+|.- .|.. .-.+-++.|+|
T Consensus 94 ~~~~~er~~~~~~~~~~~p~~~~y~~~t~R~ipvv~l~p 132 (132)
T PF04075_consen 94 EVTDDERARLWARLVAAYPGYADYQARTGRRIPVVVLEP 132 (132)
T ss_dssp EE-HHHHHHHHHHHHHHSTHHHHHHHHCSSTS-EEEEEE
T ss_pred EcCchHHHHHHHHHHHHCcChHHhcccCCCEeeEEEecC
Confidence 999888888888999999873 3321 12345666665
No 26
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=96.83 E-value=0.0028 Score=56.56 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=65.8
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeeEE-EcCCCcEEEEecC-CchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEE
Q 020357 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSS-LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (327)
Q Consensus 96 L~~~~~g~LAT~~~~~dG~P~~S~v~y~-~d~~G~~~~~~s~-~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~a~ 173 (327)
+...+..+|||++ .+|.|..-+|-|- ++++|..+ ++.- .+++.+||..||.+++++.-+. +. ..|.+.|.++
T Consensus 53 ~~~~~am~LsT~~--~d~rvssRmvLlKgl~~~gf~f-ytn~~~srk~kdL~~NP~Aal~Fyw~~--l~-rQVRveG~ve 126 (228)
T KOG2586|consen 53 IGEINAMTLSTAD--KDGRVSSRMVLLKGLDHDGFVF-YTNYGTSRKGKDLQENPNAALLFYWED--LN-RQVRVEGIVE 126 (228)
T ss_pred cCchhheeehhcc--ccCCcceeeeeeecccCCCeEE-EeeccccccccccccCCcceEEEeehh--cc-ceeEEEeccc
Confidence 4455678999998 7999988877764 57777554 4554 8999999999999999998766 11 2688999999
Q ss_pred EecchhHHHHHHHHHHhCC
Q 020357 174 SVAEKDKAAIRAVYLAKHP 192 (327)
Q Consensus 174 ~v~d~e~~~l~~~y~~~~P 192 (327)
.++.++. ++|.+.-|
T Consensus 127 ~l~~ee~----e~yf~srp 141 (228)
T KOG2586|consen 127 KLPREEA----EAYFKSRP 141 (228)
T ss_pred cCCHHHH----HHHHhcCc
Confidence 9987653 35655555
No 27
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=96.76 E-value=0.022 Score=45.77 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=55.5
Q ss_pred hcCCeEEEEeecCCCCCcceEEEe-eEEEcCC-----CcEEEEecCCchHHHhhh-hCCceEEEEeeCCCCCcceEEEEE
Q 020357 97 DRSVRGMLSTFSQKYEGYPSGSMV-DFACDAD-----GTPILAVSSLAVHTKDLL-ANPKCSLLVARDPEDRTDLVITLH 169 (327)
Q Consensus 97 ~~~~~g~LAT~~~~~dG~P~~S~v-~y~~d~~-----G~~~~~~s~~s~h~rNL~-~dprvSL~V~~~~~~~~~~rVtl~ 169 (327)
...++.+|||++ ..+|.|.+-.| .=.+..+ ..+.|++..-+.|+..|. .||+++++....+ ....+-|.
T Consensus 18 ~~~~~~~LATv~-~~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~~~~---~~~Q~Ri~ 93 (100)
T PF12766_consen 18 HPFRYFQLATVD-PPDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFWFPE---TREQFRIR 93 (100)
T ss_dssp CGGGCEEEEEEE--TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEEECC---CTEEEEEE
T ss_pred CCCceeEEEEec-CCCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEEeCC---ccEEEEEE
Confidence 456789999997 35899987443 3344443 458888889999999999 9999999998876 33467888
Q ss_pred EEEEEe
Q 020357 170 GDATSV 175 (327)
Q Consensus 170 G~a~~v 175 (327)
|++..+
T Consensus 94 G~a~ii 99 (100)
T PF12766_consen 94 GRASII 99 (100)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888776
No 28
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=96.21 E-value=0.041 Score=49.25 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=72.5
Q ss_pred CHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCC----CcEEEEecCCchHHHhhhhCCceEEEEeeCC-----
Q 020357 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD----GTPILAVSSLAVHTKDLLANPKCSLLVARDP----- 158 (327)
Q Consensus 88 ~ae~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~----G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~----- 158 (327)
..+....|++.+.+|+|.|.. .|.|+++.++|.+++. |.++.+++..-++.+-+..+..|=+.+..++
T Consensus 11 d~~~L~a~ir~~pfgtlvt~~---~~~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpdAYISP 87 (209)
T COG2808 11 DPEVLHALIRAHPFGTLVTSG---GGGPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPDAYISP 87 (209)
T ss_pred CHHHHHHHHHhCCceEEEecc---CCccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCCcccCc
Confidence 357899999999999999985 7899999999999753 4555556666677888876656644454443
Q ss_pred CCC-------------cceEEEEEEEEEEecchh-HHHHHHHHHHhC
Q 020357 159 EDR-------------TDLVITLHGDATSVAEKD-KAAIRAVYLAKH 191 (327)
Q Consensus 159 ~~~-------------~~~rVtl~G~a~~v~d~e-~~~l~~~y~~~~ 191 (327)
.|+ .+..|...|++..++|++ .+.+..+....|
T Consensus 88 ~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~~~~~~~~~Lt~~~ 134 (209)
T COG2808 88 AWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDEWLRELLARLTDEH 134 (209)
T ss_pred ccccccccCCCcCCCcceEEEEEecceeeeccHHHHHHHHHHHHHHh
Confidence 121 567899999999999875 344444444333
No 29
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=92.96 E-value=0.64 Score=41.06 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=70.7
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCC-CcEEEEecCCc-hH-HHhhhhCCceEEEEeeCCCCCcceEEE
Q 020357 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSLA-VH-TKDLLANPKCSLLVARDPEDRTDLVIT 167 (327)
Q Consensus 91 ~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~y~~d~~-G~~~~~~s~~s-~h-~rNL~~dprvSL~V~~~~~~~~~~rVt 167 (327)
..++++....++.|+|++ .||.|-..+.+|....| +.+.+.+.+.. .+ -+||..||++++......+ ....-.
T Consensus 33 ~~~e~~~~~~~~~laT~d--~dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~~--~~~~f~ 108 (173)
T COG3576 33 HYREFIQTSQLAALATVD--KDGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRNR--RALLFL 108 (173)
T ss_pred hhhhhhccccEEEEEEec--cCCCCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEeccCC--ccceEE
Confidence 477888889999999998 78999999999965433 33344455543 34 5669999999998776531 112345
Q ss_pred EEEEEEEecchh-HHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEe
Q 020357 168 LHGDATSVAEKD-KAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS 216 (327)
Q Consensus 168 l~G~a~~v~d~e-~~~l~~~y~~~~P~a~~~~~~df~l~rL~p~~v~~v~ 216 (327)
+.|+++...... .....+.+.. .-.++.......+++++++++.
T Consensus 109 v~gt~~I~~~g~~~~~~~~~~~~-----~~~~l~pk~~~vv~v~~v~~~~ 153 (173)
T COG3576 109 VKGTARIQGRGAVYDAVVKLAAF-----LMDGLPPKSAIVVTVEEVYFLA 153 (173)
T ss_pred ecceEEEEeccceehHHhhhhHh-----hccCCCCceeEEEEeehhhhhh
Confidence 555555443221 1111111111 1112234466778888888773
No 30
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=79.67 E-value=6.3 Score=34.75 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=41.6
Q ss_pred EEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC
Q 020357 102 GMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 158 (327)
Q Consensus 102 g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~ 158 (327)
.++.|.+ .+ .|..+|+-..++ ++.+++..-..|..++||++++.+++-|.+|.
T Consensus 3 ~IvtT~~--~~-~~N~APiGi~~~-~~~~~~~lf~gS~T~~Nl~~~~~~vvnit~Dp 55 (177)
T PF04289_consen 3 VIVTTKN--ED-EPNAAPIGIIRD-GDELIIRLFKGSHTYENLKETGYFVVNITDDP 55 (177)
T ss_dssp EEEEEES--TT--EEEEEEEEEES-SSEEEEEEETTSHHHHHHHHHSEEEEEE---H
T ss_pred EEEEECC--CC-CCcCCcEEEEEE-CCEEEEEEcCCCchHHHHhhCCEEEEEECCCH
Confidence 4667776 56 899999999886 45788888899999999999999999998764
No 31
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.72 E-value=73 Score=26.33 Aligned_cols=88 Identities=15% Similarity=0.065 Sum_probs=56.1
Q ss_pred HhcCCeEEEEeecCCCCCcceE--EEeeEEEcCCCcEEEEecC--CchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEE
Q 020357 96 LDRSVRGMLSTFSQKYEGYPSG--SMVDFACDADGTPILAVSS--LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGD 171 (327)
Q Consensus 96 L~~~~~g~LAT~~~~~dG~P~~--S~v~y~~d~~G~~~~~~s~--~s~h~rNL~~dprvSL~V~~~~~~~~~~rVtl~G~ 171 (327)
+.......++... .||.-++ +++|.+.. ++++|+-.-. .+.-++.-.......+.+.. +...=.
T Consensus 6 i~~adel~iap~r--~DG~t~~~p~~IW~V~v-dd~lYVRs~~G~~s~Wy~~A~~~~~GrI~a~G---------~~~dV~ 73 (116)
T PF10012_consen 6 IDAADELHIAPFR--EDGKTLRTPTWIWVVRV-DDDLYVRSYNGRNSRWYRAALAQGAGRIRAGG---------VEKDVT 73 (116)
T ss_pred cCccceEEecccc--CCCcccCCCeeEEEEEE-CCEEEEEecCCCcCHHHHHHhhCCCcEEEECC---------EEeeEE
Confidence 4566677788887 7895444 77888887 5789886643 35667666555554444422 222223
Q ss_pred EEEecch-hHHHHHHHHHHhCCCCc
Q 020357 172 ATSVAEK-DKAAIRAVYLAKHPNAF 195 (327)
Q Consensus 172 a~~v~d~-e~~~l~~~y~~~~P~a~ 195 (327)
.+.+.|+ ....+-+.|.+||....
T Consensus 74 F~~v~d~~~~~~iD~AYr~KY~~s~ 98 (116)
T PF10012_consen 74 FEPVTDPALNDAIDAAYRAKYGGSP 98 (116)
T ss_pred EEeCCCHHHHHHHHHHHHHhcCCCC
Confidence 4455444 46778899999998753
No 32
>COG4334 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.37 E-value=1.8e+02 Score=23.91 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEee--EEEcCCCcEEEEecCC--chHHHhhhhCCceEEEEeeCCCCCcceE
Q 020357 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVD--FACDADGTPILAVSSL--AVHTKDLLANPKCSLLVARDPEDRTDLV 165 (327)
Q Consensus 90 e~ar~LL~~~~~g~LAT~~~~~dG~P~~S~v~--y~~d~~G~~~~~~s~~--s~h~rNL~~dprvSL~V~~~~~~~~~~r 165 (327)
++++.+.+.... -++-.. ++|.-|+++.| |++- ||.+|+.-... |+-++.-.... .+|
T Consensus 10 D~l~ki~~~dDl-~IsPfr--e~grtygtptWIW~v~v-DgdLyVrgy~G~aSrWyqaA~~qr--------------aGr 71 (131)
T COG4334 10 DELKKISKIDDL-YISPFR--EEGRTYGTPTWIWFVYV-DGDLYVRGYRGRASRWYQAAMIQR--------------AGR 71 (131)
T ss_pred HHHHhhhhccce-EecCcc--ccCcccCCccEEEEEEE-CCceEEeecCcchhHHHHHHHHhh--------------CCe
Confidence 345555444433 355554 78998888766 5544 57788755433 34444322221 124
Q ss_pred EEEEEE-----EEEecchhHHHHHHHHHHhCCCCcc
Q 020357 166 ITLHGD-----ATSVAEKDKAAIRAVYLAKHPNAFW 196 (327)
Q Consensus 166 Vtl~G~-----a~~v~d~e~~~l~~~y~~~~P~a~~ 196 (327)
++..|. .++|+++-.+.+.+.|.+++....|
T Consensus 72 ItaaG~t~~V~FEPVtgainD~id~~Yr~ky~~S~y 107 (131)
T COG4334 72 ITAAGKTYQVEFEPVTGAINDKIDDSYRQKYGYSWY 107 (131)
T ss_pred EEecceEEEEEEeecccchHHHHHHHHHhhcccccc
Confidence 444444 4556665456788899999988733
No 33
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=41.20 E-value=1e+02 Score=23.43 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=34.6
Q ss_pred HHHHHhc--CCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEE
Q 020357 92 IRTVLDR--SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLV 154 (327)
Q Consensus 92 ar~LL~~--~~~g~LAT~~~~~dG~P~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V 154 (327)
+.+|-.. ...-+-+|++ |.+|-+.+.. ..+|..+|.++..-++...+...-.|++.+
T Consensus 22 ~~~l~~~~~g~v~V~~tI~----g~~~~~sl~p--~g~G~~~Lpv~~~vRk~~g~~~Gd~V~v~l 80 (80)
T PF08922_consen 22 AEELGEGGWGRVPVRGTID----GHPWRTSLFP--MGNGGYILPVKAAVRKAIGKEAGDTVEVTL 80 (80)
T ss_dssp HHHH--S--S-EEEEEEET----TEEEEEEEEE--SSTT-EEEEE-HHHHHHHT--TTSEEEEEE
T ss_pred HHHhccccCCceEEEEEEC----CEEEEEEEEE--CCCCCEEEEEcHHHHHHcCCCCCCEEEEEC
Confidence 3444434 5777788884 8998874433 667888888887777777777776666543
No 34
>PF01613 Flavin_Reduct: Flavin reductase like domain; InterPro: IPR002563 The FMN-binding domain is found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes, and various other oxidoreductase and monooxygenase enzymes [, , ]. This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0042602 flavin reductase activity, 0055114 oxidation-reduction process; PDB: 2ECU_A 2ED4_B 2ECR_A 1YOA_A 2QCK_A 3HMZ_A 2D36_A 2D38_A 2D37_A 3NFW_D ....
Probab=29.31 E-value=85 Score=26.18 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=36.9
Q ss_pred eEEEEeecCCCCCcceEEEeeEEE---cCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC
Q 020357 101 RGMLSTFSQKYEGYPSGSMVDFAC---DADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 158 (327)
Q Consensus 101 ~g~LAT~~~~~dG~P~~S~v~y~~---d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~ 158 (327)
.++++| . .+|.+.+.++.... .+.-.+.|.+...+.-.+||++.+.+++.+...+
T Consensus 8 v~vvtt-~--~~g~~~~~~~s~~~~~s~~Pp~v~~~l~~~~~t~~~i~~~~~f~vn~l~~~ 65 (154)
T PF01613_consen 8 VAVVTT-D--EDGEPNGMTVSSVTSVSLDPPLVLVSLNKSSHTYDNIEESGEFTVNVLSED 65 (154)
T ss_dssp -EEEEE-E--ETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBGG
T ss_pred cEEEEE-C--CCCeEEEEEeeeeEEEECCCCEEEEEECCCCchhHHHhhCCcEEEEeCHHH
Confidence 566777 5 58888776665433 2123466666667777899999999888876543
No 35
>COG2457 Uncharacterized conserved protein [Function unknown]
Probab=26.85 E-value=1.9e+02 Score=26.14 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=33.4
Q ss_pred eEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC
Q 020357 116 SGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 158 (327)
Q Consensus 116 ~~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dprvSL~V~~~~ 158 (327)
-+.|+-..+- ++.+.+.+-.+++.+.|+..+..++..|.+|.
T Consensus 28 N~aPIGIi~~-gd~~~~kLy~GsrT~eNl~~~~~~~vnVv~D~ 69 (199)
T COG2457 28 NAAPIGIIVK-GDKLKVKLYKGSRTYENLEKSNYLSVNVVDDP 69 (199)
T ss_pred CcCceEEEEe-CCEEEEEEecCcchHHHHhhcCeEEEEecCCH
Confidence 4444444443 46788888999999999999999999998876
No 36
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=23.28 E-value=99 Score=22.94 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=25.0
Q ss_pred EEEeeEEEcCCCcEEEEecCCchHHHhhhhCCc
Q 020357 117 GSMVDFACDADGTPILAVSSLAVHTKDLLANPK 149 (327)
Q Consensus 117 ~S~v~y~~d~~G~~~~~~s~~s~h~rNL~~dpr 149 (327)
|+-.-|+.. ||.+++.+|....+.-.+.+|||
T Consensus 16 GtG~m~Vr~-Dg~v~~FcssKc~k~~~~~rnPR 47 (66)
T COG2075 16 GTGIMYVRN-DGKVLRFCSSKCEKLFKLGRNPR 47 (66)
T ss_pred CceEEEEec-CCeEEEEechhHHHHHHccCCCc
Confidence 444557776 78888889999988777788987
No 37
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=22.58 E-value=69 Score=26.93 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=23.5
Q ss_pred eeEEEcCCCcEEEEecCCchHHHhhhhCCc
Q 020357 120 VDFACDADGTPILAVSSLAVHTKDLLANPK 149 (327)
Q Consensus 120 v~y~~d~~G~~~~~~s~~s~h~rNL~~dpr 149 (327)
.-|+.. +|.++++++....+.-.+++|||
T Consensus 20 ~~fVR~-DGkvf~FcssKC~k~f~~kRnPR 48 (131)
T PRK14891 20 TMFVRK-DGTVLHFVDSKCEKNYDLGREAR 48 (131)
T ss_pred cEEEec-CCCEEEEecHHHHHHHHccCCCc
Confidence 347766 68888889999888778899997
Done!