BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020360
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 92/139 (66%), Gaps = 6/139 (4%)
Query: 1 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLK------CGAKLRDTVLDWEDALPPKEM 54
+E C C ++Y RD V T+GLK T R C+ K C +LRDT+LDWED+LP +++
Sbjct: 138 VEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDL 197
Query: 55 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 114
A++ + AD+ + LGTSLQI P+ NLPL R GG++VIVNLQ T D+ A L IHG+
Sbjct: 198 ALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGY 257
Query: 115 VDKVVAGVMDLLNLRIPPY 133
VD+V+ +M+ L L IP +
Sbjct: 258 VDEVMTRLMEHLGLEIPAW 276
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 91/139 (65%), Gaps = 6/139 (4%)
Query: 1 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLK------CGAKLRDTVLDWEDALPPKEM 54
+E C C ++Y RD V T+GLK T R C+ K C +LRDT+LDWED+LP +++
Sbjct: 138 VEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDL 197
Query: 55 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 114
A++ + AD+ + LGTSLQI P+ NLPL R GG++VIVNLQ T D+ A L IHG+
Sbjct: 198 ALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGY 257
Query: 115 VDKVVAGVMDLLNLRIPPY 133
VD+V+ +M L L IP +
Sbjct: 258 VDEVMTRLMKHLGLEIPAW 276
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 4 CPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKI 63
C SC + FEVE+ +C KCG+ LR V+ + + LPP ++ A + +
Sbjct: 124 CTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVER 177
Query: 64 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVV 119
ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D++V
Sbjct: 178 ADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELV 237
Query: 120 AGVMDLLNLRI 130
V L+L++
Sbjct: 238 RHVRKALSLKL 248
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 4 CPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKI 63
C SC + FEVE+ +C KCG+ LR V+ + + LPP ++ A + +
Sbjct: 124 CTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVER 177
Query: 64 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVV 119
ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D++V
Sbjct: 178 ADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELV 237
Query: 120 AGVMDLLNLRI 130
V L+L++
Sbjct: 238 RHVRKALSLKL 248
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 4 CPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKI 63
C SC + FEVE+ +C KCG+ LR V+ + + LPP ++ A + +
Sbjct: 124 CTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVER 177
Query: 64 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVV 119
ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D++V
Sbjct: 178 ADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELV 237
Query: 120 AGVMDLLNLRI 130
V L+L++
Sbjct: 238 RHVRKALSLKL 248
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 4 CPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKI 63
C SC + FEVE+ +C KCG+ LR V+ + LPP ++ A + +
Sbjct: 124 CTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDAAMREVER 177
Query: 64 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVV 119
ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D++V
Sbjct: 178 ADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELV 237
Query: 120 AGVMDLLNLRI 130
V L+L++
Sbjct: 238 RHVRKALSLKL 248
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 29 CSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLR 88
C D C + +R ++ + + LP + A A +++ LG+SL + PA LPL +R
Sbjct: 148 CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVR 205
Query: 89 GGGKIVIVNLQKTPKDKKASL 109
GGK+VIVNL +TP D A+L
Sbjct: 206 SGGKLVIVNLGETPFDDIATL 226
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 29 CSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLR 88
C D C + +R ++ + + LP + A A +++ LG+SL + PA LPL +R
Sbjct: 148 CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVR 205
Query: 89 GGGKIVIVNLQKTPKDKKASL 109
GGK+VIVNL +TP D A+L
Sbjct: 206 SGGKLVIVNLGETPFDDIATL 226
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 29 CSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLR 88
C D C + +R ++ + + LP + A A +++ LG+SL + PA LPL +R
Sbjct: 148 CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVR 205
Query: 89 GGGKIVIVNLQKTPKDKKASL 109
GGK+VIVNL +TP D A+L
Sbjct: 206 SGGKLVIVNLGETPFDDIATL 226
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 4 CPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKI 63
C SC + FEVE+ +C KCG+ LR V+ + LPP ++ A + +
Sbjct: 124 CTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDRAMREVER 177
Query: 64 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVV 119
ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D++V
Sbjct: 178 ADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELV 237
Query: 120 AGVMDLLNLRI 130
V L+L++
Sbjct: 238 RHVRKALSLKL 248
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 4 CPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKI 63
C SC + FEVE+ +C KCG+ LR V+ + + LPP ++ A + +
Sbjct: 135 CTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVER 188
Query: 64 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVV 119
ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +V+
Sbjct: 189 ADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 244
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 9 SEYFRDFEVETIGLKETSRRCSDLKCGAK-LRDTVLDWEDALPPKEMNPAEKHCKIADVV 67
SE+ DF I RC KCG+ ++ V+ + + LP + + A + K D
Sbjct: 136 SEFVEDFNKGEIP------RCR--KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAF 187
Query: 68 LCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMD 124
+ +G+SL + PA LP + G K++IVN + T D + I G +V+ +++
Sbjct: 188 MVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVE 244
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 28 RCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCL 87
RC + CG LR V+ + + L P + ++ D+ L +GTS + PA +
Sbjct: 175 RCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAXFAPQVA 234
Query: 88 RGGGKIVIVNLQKTPKDKKASLVIHG 113
G + N + TP + G
Sbjct: 235 ARGVPVAEFNTETTPATNRFRFHFQG 260
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 28 RCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCL 87
RC + CG LR V+ + + L P + ++ D+ L +GTS + PA +
Sbjct: 179 RCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVA 238
Query: 88 RGGGKIVIVNLQKTPKDKKASLVIHG 113
G + N + TP + G
Sbjct: 239 ARGVPVAEFNTETTPATNRFRFHFQG 264
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 28 RCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCL 87
RC + CG LR V+ + + L P + ++ D+ L +GTS + PA +
Sbjct: 177 RCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVA 236
Query: 88 RGGGKIVIVNLQKTPKDKKASLVIHG 113
G + N + TP + G
Sbjct: 237 ARGVPVAEFNTETTPATNRFRFHFQG 262
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 28 RCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCL 87
RC + CG LR V+ + + L P + ++ D+ L +GTS + PA +
Sbjct: 171 RCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVA 230
Query: 88 RGGGKIVIVNLQKTPKDKKASLVIHG 113
G + N + TP + G
Sbjct: 231 ARGVPVAEFNTETTPATNRFRFHFQG 256
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 28 RCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCL 87
RC + CG LR V+ + + L P + ++ D+ L +GTS + PA +
Sbjct: 175 RCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVA 234
Query: 88 RGGGKIVIVNLQKTPKDKKASLVIHG 113
G + N + TP + G
Sbjct: 235 ARGVPVAEFNTETTPATNRFRFHFQG 260
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 6 SCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIAD 65
SC EY + E I E + +C D C + ++ ++ + ++LP + + + D
Sbjct: 166 SCRHEYPLSWMKEKI-FSEVTPKCED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVD 222
Query: 66 VVLCLGTSLQITPACNL 82
++L +GTSLQ+ P +L
Sbjct: 223 LLLVMGTSLQVQPFASL 239
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 34 CGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKI 93
CG + ++ + + + + AE+ D++L +GTS ++ A NL + KI
Sbjct: 162 CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKI 221
Query: 94 VIVNLQKTPKDKKAS 108
V +N+ KT K S
Sbjct: 222 VEINISKTYITNKXS 236
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 6 SCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIAD 65
SC EY + E I E + +C D C + ++ ++ + ++LP + + + D
Sbjct: 166 SCRHEYPLSWMKEKI-FSEVTPKCED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVD 222
Query: 66 VVLCLGTSLQITPACNL 82
++L +GTSLQ+ P +L
Sbjct: 223 LLLVMGTSLQVQPFASL 239
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 34 CGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKI 93
CG + ++ + + + + AE+ D++L +GTS ++ A NL + KI
Sbjct: 187 CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKI 246
Query: 94 VIVNLQKTPKDKKAS 108
V +N+ KT K S
Sbjct: 247 VEINISKTYITNKMS 261
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 10/139 (7%)
Query: 1 MEACPSCGS---EYFRDFEVETIGLKETSRRCSD-----LKCGAKLRDTVLDWEDALPPK 52
+ CP C EYF + +G+ + S+ L L+ + + +ALP K
Sbjct: 185 LPLCPYCYKKRREYFPEGYNNKVGVAASQGSXSERPPYILNSYGVLKPDITFFGEALPNK 244
Query: 53 EMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112
+ D+++C+GTSL++ P + + + V++N K + L +
Sbjct: 245 FHKSIREDILECDLLICIGTSLKVAPVSEI-VNXVPSHVPQVLINRDPV-KHAEFDLSLL 302
Query: 113 GFVDKVVAGVMDLLNLRIP 131
G+ D + A V IP
Sbjct: 303 GYCDDIAAXVAQKCGWTIP 321
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Query: 4 CPSCGS---EYFRDFEVETIGLKETSRRCSD-----LKCGAKLRDTVLDWEDALPPKEMN 55
CP C EYF + +G+ + S+ L L+ + + +ALP K
Sbjct: 326 CPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHK 385
Query: 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFV 115
+ D+++C+GTSL++ P + + + V++N K + L + G+
Sbjct: 386 SIREDILECDLLICIGTSLKVAPVSEI-VNMVPSHVPQVLINRDPV-KHAEFDLSLLGYC 443
Query: 116 DKVVAGVMDLLNLRIP 131
D + A V IP
Sbjct: 444 DDIAAMVAQKCGWTIP 459
>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 306
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 104 DKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKK------FVNWT 157
D + + I + ++ +M+L N PY D+L+ + LSSD K + W
Sbjct: 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM----LSSDPKNHHVWSYRKWL 153
Query: 158 LRITSVHGQTAQLPFIKSV 176
+ +H +L F+ V
Sbjct: 154 VDTFDLHNDAKELSFVDKV 172
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 36 AKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVI 95
A LR V+ W +P M+ +AD+ + +GTS + PA + G V
Sbjct: 142 APLRPHVV-WFGEMP-LGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVE 199
Query: 96 VNLQKTPKDKK--------ASLVIHGFVDKVVAGV 122
+NL+ + + AS V+ FV+K++ G+
Sbjct: 200 LNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGL 234
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 33 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQ 75
K G L + +L EDAL P+ NP E + CLG SL+
Sbjct: 294 KLGISLEEMLLVTEDALHPEPYNPEE-------ICRCLGISLE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,115,759
Number of Sequences: 62578
Number of extensions: 352081
Number of successful extensions: 700
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 29
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)