Query 020360
Match_columns 327
No_of_seqs 173 out of 1185
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1905 Class IV sirtuins (SIR 100.0 2.1E-32 4.5E-37 260.1 9.2 196 1-206 148-350 (353)
2 PRK14138 NAD-dependent deacety 99.9 1.3E-27 2.9E-32 222.9 12.3 124 2-128 120-243 (244)
3 cd01409 SIRT4 SIRT4: Eukaryoti 99.9 1.5E-26 3.2E-31 217.8 10.4 116 2-119 119-260 (260)
4 cd01408 SIRT1 SIRT1: Eukaryoti 99.9 8.8E-26 1.9E-30 209.5 10.5 117 2-122 117-235 (235)
5 cd01410 SIRT7 SIRT7: Eukaryoti 99.9 1.1E-25 2.5E-30 205.2 10.6 111 2-114 96-206 (206)
6 PTZ00409 Sir2 (Silent Informat 99.9 2.6E-24 5.6E-29 204.1 11.5 122 2-127 138-263 (271)
7 PRK05333 NAD-dependent deacety 99.9 4.8E-24 1E-28 202.8 12.4 126 2-129 129-280 (285)
8 PRK00481 NAD-dependent deacety 99.9 4.8E-24 1E-28 197.9 12.1 118 2-126 123-240 (242)
9 cd01413 SIR2_Af2 SIR2_Af2: Arc 99.9 3.4E-24 7.4E-29 197.1 10.1 109 2-114 114-222 (222)
10 PTZ00408 NAD-dependent deacety 99.9 6.4E-24 1.4E-28 198.4 11.1 115 2-126 118-235 (242)
11 COG0846 SIR2 NAD-dependent pro 99.9 5.1E-24 1.1E-28 200.3 8.5 124 2-128 123-247 (250)
12 cd01412 SIRT5_Af1_CobB SIRT5_A 99.9 3.9E-23 8.6E-28 189.2 10.4 115 2-123 110-224 (224)
13 PTZ00410 NAD-dependent SIR2; P 99.9 2.5E-22 5.4E-27 196.5 10.4 123 2-129 148-325 (349)
14 cd01407 SIR2-fam SIR2 family o 99.9 2.8E-22 6.1E-27 183.3 10.1 109 2-114 110-218 (218)
15 cd01411 SIR2H SIR2H: Uncharact 99.9 2.3E-22 4.9E-27 185.5 8.2 106 2-118 119-224 (225)
16 KOG2682 NAD-dependent histone 99.9 4.7E-22 1E-26 185.2 8.1 124 2-129 153-281 (314)
17 cd00296 SIR2 SIR2 superfamily 99.8 2.1E-19 4.5E-24 162.8 9.5 107 2-114 114-222 (222)
18 KOG2684 Sirtuin 5 and related 99.7 1.4E-17 3.1E-22 164.5 7.2 129 3-136 205-351 (412)
19 KOG2683 Sirtuin 4 and related 99.7 1.6E-17 3.4E-22 155.0 6.4 95 26-122 211-305 (305)
20 PF02146 SIR2: Sir2 family; I 99.7 1E-16 2.3E-21 142.0 6.3 73 2-78 106-178 (178)
21 PF00205 TPP_enzyme_M: Thiamin 96.9 0.004 8.7E-08 52.5 7.3 67 55-122 69-137 (137)
22 PF03366 YEATS: YEATS family; 96.8 0.0077 1.7E-07 48.4 8.4 80 154-236 2-81 (84)
23 PRK08322 acetolactate synthase 94.9 0.074 1.6E-06 54.7 7.4 69 56-127 255-325 (547)
24 PRK07524 hypothetical protein; 94.8 0.054 1.2E-06 55.7 6.2 73 55-128 255-330 (535)
25 PRK07979 acetolactate synthase 94.7 0.079 1.7E-06 55.1 7.1 70 56-127 265-336 (574)
26 PRK08979 acetolactate synthase 94.7 0.069 1.5E-06 55.6 6.7 71 56-128 265-337 (572)
27 PRK07418 acetolactate synthase 94.6 0.086 1.9E-06 55.4 7.0 70 56-127 283-354 (616)
28 TIGR01504 glyox_carbo_lig glyo 94.5 0.089 1.9E-06 55.1 7.0 69 56-126 262-332 (588)
29 PRK06882 acetolactate synthase 94.5 0.089 1.9E-06 54.6 6.9 70 56-127 265-336 (574)
30 PRK06456 acetolactate synthase 94.4 0.1 2.2E-06 54.2 7.0 70 57-127 267-338 (572)
31 PRK07789 acetolactate synthase 94.4 0.13 2.9E-06 54.0 7.9 70 56-127 290-361 (612)
32 CHL00099 ilvB acetohydroxyacid 94.3 0.14 3E-06 53.6 7.8 69 57-127 277-347 (585)
33 TIGR02418 acolac_catab acetola 94.3 0.13 2.9E-06 52.9 7.5 69 56-127 255-325 (539)
34 PRK06466 acetolactate synthase 94.2 0.12 2.5E-06 53.9 7.0 70 56-127 265-336 (574)
35 PRK08527 acetolactate synthase 94.2 0.12 2.5E-06 53.8 6.9 69 57-127 263-333 (563)
36 PRK06154 hypothetical protein; 94.2 0.13 2.9E-06 53.6 7.3 69 56-128 273-343 (565)
37 PRK09107 acetolactate synthase 94.1 0.13 2.8E-06 54.0 7.2 70 56-127 273-344 (595)
38 PRK06725 acetolactate synthase 94.1 0.13 2.8E-06 53.8 7.1 70 56-127 273-344 (570)
39 PRK08199 thiamine pyrophosphat 94.0 0.12 2.7E-06 53.4 6.6 78 56-133 263-343 (557)
40 PLN02470 acetolactate synthase 93.9 0.16 3.5E-06 53.1 7.3 70 56-127 272-343 (585)
41 PRK05858 hypothetical protein; 93.8 0.21 4.6E-06 51.6 8.0 68 56-127 255-324 (542)
42 TIGR03254 oxalate_oxc oxalyl-C 93.7 0.19 4.2E-06 52.0 7.4 69 58-127 260-330 (554)
43 PRK08266 hypothetical protein; 93.6 0.12 2.6E-06 53.2 5.8 69 56-127 256-325 (542)
44 PRK08327 acetolactate synthase 93.6 0.16 3.5E-06 52.9 6.7 67 57-127 273-344 (569)
45 PRK06112 acetolactate synthase 93.5 0.2 4.4E-06 52.1 7.3 70 56-127 277-347 (578)
46 PRK07525 sulfoacetaldehyde ace 93.4 0.17 3.8E-06 52.8 6.6 72 56-127 259-333 (588)
47 PRK08978 acetolactate synthase 93.3 0.2 4.2E-06 51.8 6.8 69 56-126 255-325 (548)
48 PRK08611 pyruvate oxidase; Pro 93.3 0.21 4.5E-06 52.2 7.0 65 56-127 260-326 (576)
49 PRK11269 glyoxylate carboligas 93.3 0.22 4.8E-06 52.1 7.2 69 57-127 264-334 (591)
50 PRK06965 acetolactate synthase 93.3 0.2 4.4E-06 52.4 6.8 71 56-127 280-352 (587)
51 TIGR00118 acolac_lg acetolacta 93.2 0.21 4.6E-06 51.7 6.8 70 56-127 260-331 (558)
52 PRK06048 acetolactate synthase 93.2 0.23 5E-06 51.6 7.1 71 56-128 266-338 (561)
53 PRK08155 acetolactate synthase 93.2 0.25 5.5E-06 51.2 7.4 69 57-127 271-341 (564)
54 PRK07282 acetolactate synthase 93.1 0.24 5.2E-06 51.6 7.0 70 56-127 269-340 (566)
55 PRK06276 acetolactate synthase 93.1 0.27 5.9E-06 51.4 7.4 70 56-127 262-333 (586)
56 PRK08617 acetolactate synthase 93.0 0.24 5.3E-06 51.1 6.9 68 57-127 262-331 (552)
57 PRK09259 putative oxalyl-CoA d 93.0 0.32 6.9E-06 50.6 7.7 69 58-127 267-337 (569)
58 COG0028 IlvB Thiamine pyrophos 92.9 0.22 4.9E-06 52.2 6.5 71 55-128 258-330 (550)
59 TIGR03457 sulphoacet_xsc sulfo 92.9 0.24 5.3E-06 51.6 6.8 72 56-127 255-329 (579)
60 PRK06546 pyruvate dehydrogenas 92.8 0.25 5.4E-06 51.7 6.7 64 56-127 258-323 (578)
61 PRK08273 thiamine pyrophosphat 92.6 0.29 6.4E-06 51.3 6.9 67 56-127 265-333 (597)
62 TIGR02720 pyruv_oxi_spxB pyruv 92.5 0.28 6.1E-06 51.2 6.6 68 56-127 257-326 (575)
63 PRK07064 hypothetical protein; 92.4 0.32 6.9E-06 50.1 6.7 69 56-127 257-327 (544)
64 KOG1185 Thiamine pyrophosphate 91.6 0.36 7.8E-06 50.4 5.9 81 46-128 259-343 (571)
65 TIGR00173 menD 2-succinyl-5-en 91.6 0.31 6.6E-06 49.1 5.4 67 57-127 269-337 (432)
66 PRK09124 pyruvate dehydrogenas 91.2 0.51 1.1E-05 49.1 6.8 64 57-127 259-324 (574)
67 PRK07710 acetolactate synthase 91.0 0.46 1E-05 49.5 6.2 71 56-128 274-346 (571)
68 PRK07092 benzoylformate decarb 90.0 0.61 1.3E-05 48.1 6.0 72 55-127 264-336 (530)
69 PLN02573 pyruvate decarboxylas 89.3 0.7 1.5E-05 48.5 5.9 69 56-127 284-352 (578)
70 TIGR03393 indolpyr_decarb indo 88.4 0.44 9.5E-06 49.3 3.6 69 56-127 265-335 (539)
71 PRK06457 pyruvate dehydrogenas 87.9 1.2 2.6E-05 46.2 6.5 60 56-122 252-313 (549)
72 COG3962 Acetolactate synthase 87.7 1.3 2.9E-05 46.3 6.5 76 56-132 288-364 (617)
73 cd02750 MopB_Nitrate-R-NarG-li 86.1 1.5 3.3E-05 44.4 5.9 54 59-112 166-221 (461)
74 PLN00022 electron transfer fla 84.9 1.7 3.7E-05 43.6 5.5 60 63-127 293-353 (356)
75 cd02759 MopB_Acetylene-hydrata 84.8 1.4 3E-05 44.8 4.9 53 60-112 157-212 (477)
76 PRK03363 fixB putative electro 84.3 1.9 4.2E-05 42.5 5.5 60 63-127 252-312 (313)
77 PRK11916 electron transfer fla 83.9 2 4.3E-05 42.4 5.4 59 64-127 252-311 (312)
78 COG2025 FixB Electron transfer 83.2 2.5 5.4E-05 41.8 5.8 60 63-127 251-311 (313)
79 cd02766 MopB_3 The MopB_3 CD i 83.0 1.4 3E-05 45.3 4.1 54 59-112 153-208 (501)
80 PRK07449 2-succinyl-5-enolpyru 82.6 1.9 4.1E-05 44.7 5.0 62 57-121 280-343 (568)
81 cd02753 MopB_Formate-Dh-H Form 82.5 2.2 4.8E-05 43.4 5.4 54 59-112 152-207 (512)
82 COG3383 Uncharacterized anaero 82.2 0.85 1.8E-05 50.0 2.3 90 25-122 386-482 (978)
83 cd02765 MopB_4 The MopB_4 CD i 82.1 1.6 3.4E-05 45.7 4.2 54 59-112 155-210 (567)
84 KOG3149 Transcription initiati 80.5 6.4 0.00014 37.7 7.4 77 152-231 35-111 (249)
85 cd02768 MopB_NADH-Q-OR-NuoG2 M 79.5 4 8.7E-05 39.8 5.8 65 59-125 144-212 (386)
86 cd02754 MopB_Nitrate-R-NapA-li 78.8 3 6.6E-05 43.1 4.9 54 59-112 153-210 (565)
87 cd02755 MopB_Thiosulfate-R-lik 78.7 3.3 7.1E-05 41.9 5.0 53 60-112 153-208 (454)
88 TIGR03479 DMSO_red_II_alp DMSO 78.4 1.9 4.1E-05 47.8 3.5 53 59-111 220-274 (912)
89 TIGR01591 Fdh-alpha formate de 77.8 3 6.6E-05 44.0 4.7 54 59-112 151-206 (671)
90 cd02763 MopB_2 The MopB_2 CD i 77.1 4.2 9.1E-05 44.0 5.5 54 59-112 151-206 (679)
91 smart00834 CxxC_CXXC_SSSS Puta 76.8 1.7 3.7E-05 29.2 1.7 31 3-39 7-37 (41)
92 TIGR03394 indol_phenyl_DC indo 76.3 2.6 5.7E-05 43.8 3.7 68 56-126 261-330 (535)
93 cd02762 MopB_1 The MopB_1 CD i 76.1 5.9 0.00013 41.0 6.2 54 59-112 152-213 (539)
94 cd02767 MopB_ydeP The MopB_yde 75.8 5 0.00011 42.5 5.6 43 59-101 159-203 (574)
95 cd02760 MopB_Phenylacetyl-CoA- 73.8 6.2 0.00013 43.2 5.8 55 59-113 169-226 (760)
96 cd05014 SIS_Kpsf KpsF-like pro 73.1 2.4 5.2E-05 34.7 2.0 57 59-115 43-100 (128)
97 cd02770 MopB_DmsA-EC This CD ( 73.0 4.1 9E-05 42.9 4.2 53 59-111 162-220 (617)
98 PRK09444 pntB pyridine nucleot 73.0 7.7 0.00017 40.3 6.0 88 39-126 354-462 (462)
99 PRK15488 thiosulfate reductase 73.0 6.1 0.00013 42.7 5.5 53 60-112 193-249 (759)
100 cd02757 MopB_Arsenate-R This C 72.7 5.6 0.00012 41.2 5.0 67 60-126 159-232 (523)
101 PF05191 ADK_lid: Adenylate ki 72.4 2.1 4.5E-05 29.3 1.2 29 3-38 3-31 (36)
102 cd00368 Molybdopterin-Binding 71.9 3.9 8.4E-05 39.3 3.4 53 59-111 152-206 (374)
103 TIGR01553 formate-DH-alph form 70.6 7.6 0.00016 44.0 5.7 54 59-112 217-272 (1009)
104 COG1029 FwdB Formylmethanofura 70.5 8.1 0.00017 39.4 5.3 75 38-116 305-385 (429)
105 PF09723 Zn-ribbon_8: Zinc rib 70.3 3.3 7.2E-05 28.9 1.9 31 3-39 7-38 (42)
106 TIGR00509 bisC_fam molybdopter 68.6 6.9 0.00015 42.4 4.7 51 61-111 165-226 (770)
107 PRK06266 transcription initiat 68.5 3.6 7.9E-05 37.3 2.3 30 3-40 119-148 (178)
108 cd02752 MopB_Formate-Dh-Na-lik 68.2 5.7 0.00012 42.8 4.0 54 59-112 165-221 (649)
109 cd02769 MopB_DMSOR-BSOR-TMAOR 68.0 8.3 0.00018 40.7 5.1 48 61-108 168-226 (609)
110 TIGR02098 MJ0042_CXXC MJ0042 f 67.8 5.1 0.00011 26.8 2.3 33 3-39 4-36 (38)
111 PF00384 Molybdopterin: Molybd 67.3 3.7 8E-05 40.2 2.2 69 58-126 106-180 (432)
112 cd02761 MopB_FmdB-FwdB The Mop 67.0 11 0.00024 37.0 5.5 52 62-113 130-191 (415)
113 cd02751 MopB_DMSOR-like The Mo 66.7 16 0.00034 38.5 6.9 50 63-112 169-229 (609)
114 TIGR01701 Fdhalpha-like oxidor 64.9 14 0.0003 40.4 6.1 44 59-102 194-239 (743)
115 PRK09939 putative oxidoreducta 64.8 7.8 0.00017 42.6 4.3 43 59-101 204-248 (759)
116 smart00531 TFIIE Transcription 64.5 5.3 0.00012 34.8 2.4 34 3-40 101-135 (147)
117 PRK00398 rpoP DNA-directed RNA 64.2 4.4 9.6E-05 28.5 1.5 26 3-37 5-30 (46)
118 cd05710 SIS_1 A subgroup of th 62.6 7.1 0.00015 32.3 2.8 57 60-116 44-101 (120)
119 cd02764 MopB_PHLH The MopB_PHL 62.5 14 0.00031 38.1 5.5 67 60-126 193-272 (524)
120 cd02758 MopB_Tetrathionate-Ra 62.0 11 0.00023 41.3 4.6 54 59-112 207-269 (735)
121 cd02068 radical_SAM_B12_BD B12 61.8 20 0.00044 29.6 5.4 67 62-128 38-112 (127)
122 PF02233 PNTB: NAD(P) transhyd 61.5 4.8 0.0001 41.9 1.8 87 40-126 356-463 (463)
123 PRK07860 NADH dehydrogenase su 61.1 9.1 0.0002 42.0 4.0 54 59-112 372-429 (797)
124 TIGR01973 NuoG NADH-quinone ox 60.2 10 0.00022 40.0 4.1 56 59-114 358-416 (603)
125 COG1996 RPC10 DNA-directed RNA 60.1 5 0.00011 29.5 1.2 26 3-37 8-33 (49)
126 cd02772 MopB_NDH-1_NuoG2 MopB_ 59.8 13 0.00029 36.6 4.6 45 58-102 147-193 (414)
127 PF13717 zinc_ribbon_4: zinc-r 59.6 8.1 0.00018 26.2 2.1 32 3-38 4-35 (36)
128 COG1282 PntB NAD/NADP transhyd 58.7 17 0.00036 37.3 5.0 87 39-126 356-463 (463)
129 TIGR02605 CxxC_CxxC_SSSS putat 58.6 6.2 0.00013 28.1 1.5 28 3-36 7-34 (52)
130 TIGR02026 BchE magnesium-proto 58.5 33 0.00072 35.5 7.4 66 62-127 62-136 (497)
131 TIGR03844 cysteate_syn cysteat 58.0 6 0.00013 40.1 1.8 27 3-41 4-30 (398)
132 PRK07586 hypothetical protein; 57.8 37 0.00081 34.8 7.6 60 55-127 254-316 (514)
133 PRK14990 anaerobic dimethyl su 57.4 14 0.00031 40.3 4.6 54 59-112 227-287 (814)
134 COG5033 TFG3 Transcription ini 57.3 25 0.00054 33.4 5.6 71 156-228 35-107 (225)
135 cd02773 MopB_Res-Cmplx1_Nad11 56.6 19 0.00042 35.2 5.1 51 59-109 141-194 (375)
136 PRK06450 threonine synthase; V 55.0 5.5 0.00012 39.3 1.0 27 3-41 5-31 (338)
137 PRK12474 hypothetical protein; 54.8 42 0.00092 34.6 7.4 60 55-127 258-320 (518)
138 PRK13937 phosphoheptose isomer 54.8 14 0.0003 33.2 3.4 56 60-115 103-159 (188)
139 TIGR02166 dmsA_ynfE anaerobic 54.4 15 0.00032 39.9 4.2 54 59-112 210-270 (797)
140 PRK04940 hypothetical protein; 54.3 11 0.00024 34.5 2.7 63 39-104 26-96 (180)
141 PRK13532 nitrate reductase cat 54.1 16 0.00035 40.1 4.4 52 59-111 202-258 (830)
142 TIGR03127 RuMP_HxlB 6-phospho 53.8 10 0.00022 33.1 2.4 55 60-114 69-124 (179)
143 PF13719 zinc_ribbon_5: zinc-r 53.4 12 0.00026 25.4 2.1 31 3-37 4-34 (37)
144 cd05006 SIS_GmhA Phosphoheptos 53.4 17 0.00036 31.9 3.7 55 60-114 98-153 (177)
145 cd05008 SIS_GlmS_GlmD_1 SIS (S 51.8 14 0.00031 29.9 2.8 56 60-115 43-99 (126)
146 PRK13938 phosphoheptose isomer 51.1 21 0.00046 32.7 4.1 55 59-113 109-164 (196)
147 COG0243 BisC Anaerobic dehydro 50.8 12 0.00026 40.5 2.8 51 61-111 197-252 (765)
148 cd05005 SIS_PHI Hexulose-6-pho 50.7 13 0.00029 32.6 2.6 57 60-116 72-129 (179)
149 cd05013 SIS_RpiR RpiR-like pro 49.9 21 0.00045 28.7 3.5 57 60-116 57-114 (139)
150 TIGR01580 narG respiratory nit 49.8 19 0.0004 41.9 4.2 61 61-121 243-307 (1235)
151 PRK06260 threonine synthase; V 49.7 8.7 0.00019 38.5 1.4 27 3-40 5-31 (397)
152 TIGR00441 gmhA phosphoheptose 49.6 33 0.00071 29.7 4.9 52 61-112 77-129 (154)
153 TIGR03129 one_C_dehyd_B formyl 48.7 23 0.0005 34.7 4.2 51 62-112 136-196 (421)
154 PRK07591 threonine synthase; V 48.5 9.5 0.00021 38.7 1.5 27 3-41 20-46 (421)
155 PF04016 DUF364: Domain of unk 48.2 16 0.00035 31.9 2.7 71 55-126 54-132 (147)
156 smart00659 RPOLCX RNA polymera 48.2 13 0.00027 26.5 1.7 25 3-37 4-28 (44)
157 TIGR00300 conserved hypothetic 48.2 22 0.00048 36.5 4.0 83 36-127 311-405 (407)
158 PRK00414 gmhA phosphoheptose i 48.2 26 0.00057 31.7 4.2 54 60-113 108-162 (192)
159 PRK15482 transcriptional regul 47.9 20 0.00044 33.8 3.6 58 58-115 177-235 (285)
160 cd03805 GT1_ALG2_like This fam 47.4 1.2E+02 0.0027 28.7 8.9 81 40-127 280-363 (392)
161 PLN02980 2-oxoglutarate decarb 47.0 28 0.0006 41.6 5.2 63 59-124 594-659 (1655)
162 TIGR00354 polC DNA polymerase, 45.5 13 0.00028 42.1 2.0 49 3-65 1014-1062(1095)
163 PRK11557 putative DNA-binding 44.9 23 0.00049 33.2 3.3 60 54-113 166-226 (278)
164 PF09845 DUF2072: Zn-ribbon co 44.9 11 0.00024 33.1 1.1 27 2-37 2-28 (131)
165 PRK04023 DNA polymerase II lar 44.5 14 0.0003 42.1 2.0 49 3-65 1039-1087(1121)
166 PRK09129 NADH dehydrogenase su 44.5 37 0.00081 37.0 5.3 46 58-103 365-412 (776)
167 TIGR01706 NAPA periplasmic nit 44.0 24 0.00053 38.8 3.9 52 59-111 202-258 (830)
168 COG1737 RpiR Transcriptional r 43.1 31 0.00068 32.9 4.1 74 37-113 154-228 (281)
169 PRK11302 DNA-binding transcrip 42.2 36 0.00079 31.7 4.3 55 59-113 171-225 (284)
170 PRK14714 DNA polymerase II lar 41.9 16 0.00034 42.5 2.0 49 3-65 1255-1303(1337)
171 PF09538 FYDLN_acid: Protein o 41.9 17 0.00037 30.7 1.8 28 3-41 11-39 (108)
172 COG3357 Predicted transcriptio 41.9 13 0.00028 30.9 1.0 26 2-36 59-84 (97)
173 PRK11337 DNA-binding transcrip 41.7 36 0.00077 32.2 4.2 58 56-113 180-238 (292)
174 PF13248 zf-ribbon_3: zinc-rib 41.0 13 0.00029 23.3 0.8 23 3-38 4-26 (26)
175 cd00350 rubredoxin_like Rubred 40.6 23 0.00049 23.4 1.9 24 2-36 2-25 (33)
176 PRK05580 primosome assembly pr 40.2 54 0.0012 35.5 5.7 21 54-74 469-489 (679)
177 PF13240 zinc_ribbon_2: zinc-r 39.8 15 0.00032 22.7 0.8 23 3-38 1-23 (23)
178 PRK00945 acetyl-CoA decarbonyl 39.7 50 0.0011 30.0 4.6 59 62-124 107-166 (171)
179 TIGR03471 HpnJ hopanoid biosyn 39.6 93 0.002 31.7 7.1 69 56-124 61-138 (472)
180 cd00729 rubredoxin_SM Rubredox 38.9 23 0.00049 23.8 1.7 24 2-36 3-26 (34)
181 cd03816 GT1_ALG1_like This fam 38.6 1.6E+02 0.0034 29.2 8.4 85 40-128 294-381 (415)
182 PF05728 UPF0227: Uncharacteri 38.5 19 0.00041 32.8 1.7 50 51-103 43-94 (187)
183 PF13913 zf-C2HC_2: zinc-finge 38.4 27 0.00058 21.8 1.9 18 1-18 2-19 (25)
184 cd03822 GT1_ecORF704_like This 38.3 1.9E+02 0.0042 26.2 8.3 86 38-127 245-333 (366)
185 PRK08166 NADH dehydrogenase su 37.2 20 0.00044 39.5 2.0 41 59-99 367-409 (847)
186 TIGR00393 kpsF KpsF/GutQ famil 37.2 44 0.00095 30.8 3.9 55 59-113 43-98 (268)
187 PHA02768 hypothetical protein; 37.2 27 0.00059 26.3 2.0 32 3-36 7-39 (55)
188 COG0761 lytB 4-Hydroxy-3-methy 37.0 74 0.0016 31.5 5.5 72 54-126 203-281 (294)
189 PRK00564 hypA hydrogenase nick 36.8 17 0.00036 30.8 1.0 25 3-37 73-97 (117)
190 PF01155 HypA: Hydrogenase exp 36.6 12 0.00027 31.3 0.2 24 3-37 72-95 (113)
191 KOG3954 Electron transfer flav 36.6 41 0.00088 33.2 3.7 58 65-127 276-334 (336)
192 PRK08493 NADH dehydrogenase su 36.4 65 0.0014 36.0 5.6 68 59-126 366-442 (819)
193 PF02310 B12-binding: B12 bind 35.8 28 0.0006 28.0 2.1 82 41-123 30-121 (121)
194 TIGR02300 FYDLN_acid conserved 35.7 26 0.00057 30.7 2.0 28 3-41 11-39 (129)
195 PRK12380 hydrogenase nickel in 35.5 22 0.00048 29.9 1.5 25 2-37 71-95 (113)
196 PRK08329 threonine synthase; V 35.4 20 0.00042 35.4 1.4 28 1-41 1-28 (347)
197 PF13692 Glyco_trans_1_4: Glyc 35.4 64 0.0014 25.8 4.2 81 39-127 52-134 (135)
198 PLN02275 transferase, transfer 34.7 1.9E+02 0.0041 28.1 8.1 77 40-122 286-367 (371)
199 PRK10886 DnaA initiator-associ 34.6 65 0.0014 29.6 4.6 54 59-112 105-162 (196)
200 TIGR00100 hypA hydrogenase nic 34.1 24 0.00053 29.6 1.6 25 2-37 71-95 (115)
201 TIGR02164 torA trimethylamine- 33.9 35 0.00075 37.5 3.1 51 61-111 208-273 (822)
202 TIGR01826 CofD_related conserv 33.9 1.7E+02 0.0036 29.1 7.6 72 54-133 163-243 (310)
203 PF01286 XPA_N: XPA protein N- 33.8 17 0.00036 24.8 0.4 28 2-35 4-31 (34)
204 COG1867 TRM1 N2,N2-dimethylgua 33.8 36 0.00078 34.7 2.9 59 3-75 242-301 (380)
205 PRK05321 nicotinate phosphorib 33.3 95 0.0021 31.8 5.9 82 42-130 309-395 (400)
206 COG3364 Zn-ribbon containing p 33.3 18 0.00039 30.7 0.6 13 2-14 3-15 (112)
207 PRK10892 D-arabinose 5-phospha 32.7 44 0.00095 32.1 3.3 56 59-114 90-146 (326)
208 PF04413 Glycos_transf_N: 3-De 32.2 46 0.001 30.0 3.2 51 49-103 79-131 (186)
209 PLN02569 threonine synthase 32.0 23 0.00049 37.0 1.2 25 3-39 51-75 (484)
210 PRK13936 phosphoheptose isomer 31.7 78 0.0017 28.6 4.6 56 60-115 108-167 (197)
211 TIGR03713 acc_sec_asp1 accesso 31.7 1.1E+02 0.0025 32.0 6.3 77 41-127 409-487 (519)
212 PRK14715 DNA polymerase II lar 31.4 29 0.00063 40.8 2.0 48 3-65 1544-1591(1627)
213 PRK03681 hypA hydrogenase nick 31.2 28 0.00061 29.3 1.5 26 2-37 71-96 (114)
214 TIGR00595 priA primosomal prot 31.1 1.1E+02 0.0023 32.0 6.0 21 54-74 301-321 (505)
215 PF01380 SIS: SIS domain SIS d 31.0 20 0.00044 28.8 0.6 58 58-115 48-106 (131)
216 PRK02947 hypothetical protein; 30.6 65 0.0014 30.3 4.0 54 59-112 102-167 (246)
217 PRK08197 threonine synthase; V 30.1 23 0.00049 35.5 0.9 24 3-38 9-32 (394)
218 cd03801 GT1_YqgM_like This fam 29.3 2.7E+02 0.0059 24.6 7.6 80 40-126 256-339 (374)
219 TIGR01514 NAPRTase nicotinate 29.2 1.4E+02 0.0031 30.5 6.4 80 42-128 309-393 (394)
220 TIGR02149 glgA_Coryne glycogen 29.0 2.3E+02 0.005 26.7 7.5 54 41-100 261-314 (388)
221 PRK14991 tetrathionate reducta 28.3 70 0.0015 36.5 4.4 52 60-111 282-343 (1031)
222 PF11789 zf-Nse: Zinc-finger o 28.1 33 0.00072 25.5 1.2 31 4-35 27-57 (57)
223 PRK09130 NADH dehydrogenase su 27.5 94 0.002 33.8 5.0 45 58-102 359-406 (687)
224 PRK11543 gutQ D-arabinose 5-ph 27.4 58 0.0013 31.0 3.1 54 60-113 86-140 (321)
225 cd06267 PBP1_LacI_sugar_bindin 27.3 3.5E+02 0.0076 23.4 7.9 48 50-101 41-89 (264)
226 PF03604 DNA_RNApol_7kD: DNA d 27.0 41 0.00088 22.5 1.4 25 3-37 2-26 (32)
227 COG4821 Uncharacterized protei 26.8 92 0.002 29.7 4.1 37 60-96 101-137 (243)
228 PRK03824 hypA hydrogenase nick 26.0 40 0.00086 29.2 1.5 12 3-14 72-83 (135)
229 cd03819 GT1_WavL_like This fam 25.9 3E+02 0.0065 25.3 7.5 80 39-126 245-328 (355)
230 cd01821 Rhamnogalacturan_acety 25.4 2.8E+02 0.0062 24.0 6.9 76 55-130 57-149 (198)
231 PF13407 Peripla_BP_4: Peripla 25.4 3.6E+02 0.0077 23.9 7.7 53 45-99 36-89 (257)
232 cd03804 GT1_wbaZ_like This fam 25.4 4.8E+02 0.01 24.4 8.9 82 38-127 240-325 (351)
233 TIGR00216 ispH_lytB (E)-4-hydr 25.0 1.8E+02 0.0039 28.5 6.0 73 53-126 198-277 (280)
234 PRK15102 trimethylamine N-oxid 24.8 99 0.0021 34.1 4.6 46 61-106 211-270 (825)
235 cd02771 MopB_NDH-1_NuoG2-N7 Mo 24.4 42 0.00092 33.8 1.6 18 59-76 141-158 (472)
236 cd05007 SIS_Etherase N-acetylm 24.0 70 0.0015 30.4 2.9 52 61-112 116-168 (257)
237 PRK05441 murQ N-acetylmuramic 23.9 1E+02 0.0023 29.9 4.2 53 61-113 129-182 (299)
238 PF10087 DUF2325: Uncharacteri 23.9 78 0.0017 25.2 2.8 42 56-97 41-82 (97)
239 PF10571 UPF0547: Uncharacteri 23.7 51 0.0011 21.0 1.3 21 3-36 2-22 (26)
240 COG1379 PHP family phosphoeste 23.6 24 0.00052 35.7 -0.3 33 3-43 248-280 (403)
241 cd06270 PBP1_GalS_like Ligand 23.3 4.4E+02 0.0095 23.4 7.9 58 62-126 54-111 (268)
242 cd04795 SIS SIS domain. SIS (S 23.1 99 0.0021 23.0 3.1 40 58-97 42-81 (87)
243 PF11071 DUF2872: Protein of u 23.1 93 0.002 27.6 3.2 67 56-122 65-136 (141)
244 cd02774 MopB_Res-Cmplx1_Nad11- 22.6 85 0.0018 31.4 3.3 49 57-106 142-193 (366)
245 PRK12360 4-hydroxy-3-methylbut 22.6 2.1E+02 0.0046 28.0 5.9 73 53-126 199-278 (281)
246 PRK10017 colanic acid biosynth 22.4 3.3E+02 0.0072 27.9 7.6 79 53-134 107-202 (426)
247 PF02591 DUF164: Putative zinc 22.1 62 0.0013 23.5 1.7 34 2-38 23-56 (56)
248 cd05005 SIS_PHI Hexulose-6-pho 22.0 3.6E+02 0.0079 23.4 6.9 75 47-121 16-94 (179)
249 PF13580 SIS_2: SIS domain; PD 21.8 1E+02 0.0023 26.0 3.3 36 61-96 101-136 (138)
250 cd04955 GT1_like_6 This family 21.8 4.1E+02 0.009 24.4 7.6 57 39-101 247-303 (363)
251 TIGR00274 N-acetylmuramic acid 21.7 85 0.0019 30.5 3.1 52 61-112 124-176 (291)
252 COG3925 N-terminal domain of t 21.7 55 0.0012 27.5 1.5 31 62-100 39-69 (103)
253 PRK11382 frlB fructoselysine-6 21.6 84 0.0018 30.8 3.0 54 61-114 90-144 (340)
254 KOG2979 Protein involved in DN 21.6 55 0.0012 31.9 1.7 41 5-46 193-235 (262)
255 cd07044 CofD_YvcK Family of Co 21.4 2.9E+02 0.0062 27.4 6.7 83 40-130 151-242 (309)
256 PRK15484 lipopolysaccharide 1, 21.4 5.1E+02 0.011 25.2 8.5 69 57-127 270-343 (380)
257 TIGR02693 arsenite_ox_L arseni 21.3 1.5E+02 0.0032 33.0 5.1 50 59-108 216-284 (806)
258 cd03808 GT1_cap1E_like This fa 21.3 4.1E+02 0.0088 23.6 7.2 78 40-126 246-327 (359)
259 TIGR03087 stp1 sugar transfera 21.3 4.2E+02 0.0091 25.7 7.8 81 39-127 279-361 (397)
260 PRK05638 threonine synthase; V 21.3 44 0.00096 34.0 1.1 26 2-40 2-27 (442)
261 cd03807 GT1_WbnK_like This fam 21.2 3.1E+02 0.0066 24.5 6.4 80 38-127 249-331 (365)
262 PF00096 zf-C2H2: Zinc finger, 21.2 48 0.001 19.2 0.8 15 3-17 2-16 (23)
263 COG2331 Uncharacterized protei 20.9 31 0.00068 27.8 -0.1 40 3-48 14-58 (82)
264 cd02756 MopB_Arsenite-Ox Arsen 20.8 1.9E+02 0.0041 31.6 5.7 50 59-108 219-288 (676)
265 cd03794 GT1_wbuB_like This fam 20.7 6.2E+02 0.013 22.7 8.6 82 40-126 275-363 (394)
266 cd03799 GT1_amsK_like This is 20.6 5.2E+02 0.011 23.6 7.9 84 40-127 236-326 (355)
267 cd03806 GT1_ALG11_like This fa 20.1 6.3E+02 0.014 25.2 8.9 82 39-128 304-392 (419)
No 1
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.1e-32 Score=260.06 Aligned_cols=196 Identities=46% Similarity=0.699 Sum_probs=174.1
Q ss_pred CCcCCCCCCeecchhhhhhhcCCCCCCCCCCCC------CCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCc
Q 020360 1 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLK------CGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSL 74 (327)
Q Consensus 1 ~e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~------CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSL 74 (327)
+|.|.+|..+|.++.++++++.+.+++.|.+.. |.|.|++.+++|+..+|..+|+.|.+++++||++||+||||
T Consensus 148 iEvC~sC~~~yvr~~~v~t~gl~at~R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSL 227 (353)
T KOG1905|consen 148 IEVCKSCRPEYVRDRVVDTVGLKATGRHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSL 227 (353)
T ss_pred HHHhhhhcccceehhheeecccccccccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccce
Confidence 478999999999999999998877777665543 45889999999999999999999999999999999999999
Q ss_pred ccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhcccCCCccc-cCcceEEEeeecCCCCcc
Q 020360 75 QITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIR-IDLLQIIVTQSLSSDKKF 153 (327)
Q Consensus 75 qV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~~IP~~~~-~~~~~i~~~~~~~~~~~~ 153 (327)
+|.|.+++|+.+.+.|++++|||+|+|++|+.|++.|||+||+||..||+.||++||.|++ .|++++.++........+
T Consensus 228 qI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~~~d~~~~~~t~~~~~~~~~ 307 (353)
T KOG1905|consen 228 QILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYDRLPDPIFILLTLSRPGEEHT 307 (353)
T ss_pred EeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCcccCCCcccccccccCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999997 577877776666566788
Q ss_pred eeeEEEEeeccCCCCcccceeEEEEecCCccccccccccCCCeEEEEeeeccc
Q 020360 154 VNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINE 206 (327)
Q Consensus 154 ~~w~l~~~~v~~~~~p~~~ik~v~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 206 (327)
.+|.+...++++...+.+|++.+. +++++++++.-.++....+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~----------spi~~~~~~~~~~k~~rr~ 350 (353)
T KOG1905|consen 308 IPQPLLKNSVEETTKQEPFISTIS----------SPILKGPRIRTPIKNGRRV 350 (353)
T ss_pred ccccccccccccCCCCCccccccc----------cccccCCCCcCCccCcccc
Confidence 899999999999888899999887 2488888887776555443
No 2
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=99.95 E-value=1.3e-27 Score=222.93 Aligned_cols=124 Identities=32% Similarity=0.537 Sum_probs=113.8
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|+.+.....+. ...+|+|+ .|||.|||+||||||++|+..++.+.+++++||++|||||||+|+|++.
T Consensus 120 ~~C~~C~~~~~~~~~~~~~~-~~~~p~Cp--~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~ 196 (244)
T PRK14138 120 YYCVRCGKRYTVEDVIEKLE-KSDVPRCD--DCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAE 196 (244)
T ss_pred eEECCCCCcccHHHHHHHHh-cCCCCCCC--CCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhH
Confidence 47999999998876654332 23579999 8999999999999999999989999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhcc
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
|+..++++|+++++||+++|+.|..+|++|+|+++++|++||+.||+
T Consensus 197 l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~~~ 243 (244)
T PRK14138 197 LPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEGGI 243 (244)
T ss_pred HHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999998875
No 3
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.93 E-value=1.5e-26 Score=217.84 Aligned_cols=116 Identities=26% Similarity=0.388 Sum_probs=103.1
Q ss_pred CcCCCCCCeecchhhhhhhc--------------------------CCCCCCCCCCCCCCceeeccEEecCCCCChhhHH
Q 020360 2 EACPSCGSEYFRDFEVETIG--------------------------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMN 55 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~--------------------------~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~ 55 (327)
.+|..|++.|.++...+.+. .....|+|+ .|+|.|||+||||||++|++.+.
T Consensus 119 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~C~--~Cgg~lrP~VV~FGE~lp~~~~~ 196 (260)
T cd01409 119 VVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVDLEDEQVAGFRVPECE--RCGGVLKPDVVFFGENVPRDRVV 196 (260)
T ss_pred EEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccccchhhcccCCCCCCC--CCCCEECCCEEECCCCCCHHHHH
Confidence 47999999998765443211 012368999 79999999999999999998899
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHH
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVV 119 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL 119 (327)
.|.+++++|||+|||||||+|+|++.|+..+.++|+++|+||+++|++|..+|++|+|+++++|
T Consensus 197 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 197 TAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred HHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 9999999999999999999999999999999899999999999999999999999999999875
No 4
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=99.93 E-value=8.8e-26 Score=209.51 Aligned_cols=117 Identities=22% Similarity=0.422 Sum_probs=104.1
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|+.++....+.. ...|+|+ .|+|.|||+||||||.+|++.+..+.+++++||++|||||||+|+|++.
T Consensus 117 ~~C~~C~~~~~~~~~~~~~~~-~~~p~C~--~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~ 193 (235)
T cd01408 117 AHCIKCKHKYPGDWMREDIFN-QEVPKCP--RCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFAS 193 (235)
T ss_pred cccccCCCcCCHHHHHHHHhC-CCCccCC--CCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHH
Confidence 579999999988765544422 2479999 8999999999999999999878888899999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHH
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGV 122 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L 122 (327)
|+..++ .|+++|+||+++|+.+ ..+|++|+|+|+++|++|
T Consensus 194 l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 194 LPSRVP-SEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHh-CCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 998776 6899999999999998 889999999999999875
No 5
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.93 E-value=1.1e-25 Score=205.21 Aligned_cols=111 Identities=60% Similarity=0.954 Sum_probs=101.9
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|..+.....+.....+|+|+ .|||.|||+||||||++|...+..|.+++++||++|||||||+|+|+++
T Consensus 96 ~~C~~C~~~~~~~~~~~~~~~~~~~p~C~--~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~ 173 (206)
T cd01410 96 EVCKSCGPEYVRDDVVETRGDKETGRRCH--ACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAAN 173 (206)
T ss_pred ccCCCCCCccchHHHHHHhhcCCCCCcCC--CCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHH
Confidence 47999999998887665554455689999 8999999999999999999889999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEcc
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~ 114 (327)
|+..+++.|+++++||+++|+.|..+|++|+|+
T Consensus 174 l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~~~ 206 (206)
T cd01410 174 LPLKAARAGGRLVIVNLQPTPKDKLADLVIHGD 206 (206)
T ss_pred HHHHHHhcCCeEEEECCCCCCCCccccEEEeCC
Confidence 999898999999999999999999999999985
No 6
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=99.91 E-value=2.6e-24 Score=204.14 Aligned_cols=122 Identities=23% Similarity=0.396 Sum_probs=104.7
Q ss_pred CcCCCCCCeecchhhhhhh-c--CCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCccccc
Q 020360 2 EACPSCGSEYFRDFEVETI-G--LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITP 78 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti-~--~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~P 78 (327)
.+|..|++.|..+...... . ....+|+|+ |||.|||+||||||.+|++.++.|.+++++||++|||||||+|+|
T Consensus 138 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~---Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~p 214 (271)
T PTZ00409 138 ARCCTCRKTIQLNKIMLQKTSHFMHQLPPECP---CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVST 214 (271)
T ss_pred ceeCCCCCCcccCHHHHhhhhhhccCCCCCCC---CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccC
Confidence 4799999988765433110 0 123468997 999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhcCCCeEEEEcCCCCCCC-CCccEEEEccHHHHHHHHHHHhc
Q 020360 79 ACNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 79 Aa~Lp~~a~~~G~~lVIINlqpT~~D-~~adl~I~g~~devL~~L~k~Lg 127 (327)
++.||..|+++|+++|+||+++|+++ ..+|++|+|++++++. +++.|.
T Consensus 215 a~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~~ 263 (271)
T PTZ00409 215 ATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDILK 263 (271)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHhc
Confidence 99999999999999999999999987 5789999999999995 445554
No 7
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=99.91 E-value=4.8e-24 Score=202.84 Aligned_cols=126 Identities=22% Similarity=0.347 Sum_probs=111.7
Q ss_pred CcCCCCCCeecchhhhhhhc--------------------------CCCCCCCCCCCCCCceeeccEEecCCCCChhhHH
Q 020360 2 EACPSCGSEYFRDFEVETIG--------------------------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMN 55 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~--------------------------~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~ 55 (327)
.+|..|++.|.++.+...+. ....+|+|+ .|||.|||+||||||.+|++.+.
T Consensus 129 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP~C~--~Cgg~lrP~Vv~FgE~lp~~~~~ 206 (285)
T PRK05333 129 VRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAPDGDADLEWAAFDHFRVPACP--ACGGILKPDVVFFGENVPRERVA 206 (285)
T ss_pred EEECCCCCcCCHHHHHHHHhhcCcchhhhhcccCCCccccccccccccCCCCCCC--CCCCcccCCEEEcCCCCCHHHHH
Confidence 47999999988664432210 012369999 89999999999999999999899
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhccc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLR 129 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~~ 129 (327)
.+.+++++||++|||||||.|.|++.++..+.+.|+++|+||+++++.+..+++.|+|+++++|+.|++.|++.
T Consensus 207 ~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 207 AARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred HHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999863
No 8
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=99.91 E-value=4.8e-24 Score=197.89 Aligned_cols=118 Identities=36% Similarity=0.590 Sum_probs=108.6
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|..+.... ...|+|+ .|||.|||+||||||.+|+..+..+.+++++||++|||||||+|.|++.
T Consensus 123 ~~C~~C~~~~~~~~~~~-----~~~p~C~--~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~ 195 (242)
T PRK00481 123 ARCTKCGQTYDLDEYLK-----PEPPRCP--KCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAG 195 (242)
T ss_pred eeeCCCCCCcChhhhcc-----CCCCCCC--CCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhH
Confidence 47999999998776532 2368899 8999999999999999999889999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHh
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~L 126 (327)
++..+++.|+++|+||++++..+..+++.|+|+++++|++|+++|
T Consensus 196 l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 196 LPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 998888899999999999999999999999999999999999987
No 9
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=99.90 E-value=3.4e-24 Score=197.09 Aligned_cols=109 Identities=38% Similarity=0.563 Sum_probs=98.1
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|+.+.. ..+ .....|+|+ .|||.|||+||||||.+|++.++.|.+++++||++|||||||+|+|+++
T Consensus 114 ~~C~~C~~~~~~~~~-~~~-~~~~~p~C~--~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~ 189 (222)
T cd01413 114 AYCVNCGSKYDLEEV-KYA-KKHEVPRCP--KCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANL 189 (222)
T ss_pred ceECCCCCCcchhHH-HHh-ccCCCCcCC--CCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhH
Confidence 479999999987754 222 123579999 8999999999999999999989999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEcc
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~ 114 (327)
|+..|+++|+++|+||+++|++|..+|++|+|+
T Consensus 190 l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 190 LPLIAKENGAKLVIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred HHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCC
Confidence 999999999999999999999999999999874
No 10
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=99.90 E-value=6.4e-24 Score=198.37 Aligned_cols=115 Identities=22% Similarity=0.316 Sum_probs=100.4
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCC--ceeeccEEecCC-CCChhhHHHHHHHhhhCCEEEEEccCccccc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCG--AKLRDTVLDWED-ALPPKEMNPAEKHCKIADVVLCLGTSLQITP 78 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~Cg--G~LRPdVV~FGE-~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~P 78 (327)
.+|..|++.|+.+.... ...|.|+ .|| |.|||+|||||| .+|.+.+. +++++|||+|||||||+|+|
T Consensus 118 ~~C~~C~~~~~~~~~~~-----~~~p~C~--~Cg~~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~p 187 (242)
T PTZ00408 118 VRCTATGHVFDWTEDVV-----HGSSRCK--CCGCVGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYP 187 (242)
T ss_pred EEECCCCcccCchhhhh-----cCCCccc--cCCCCCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCcccc
Confidence 47999999987654331 1368999 687 999999999999 77765444 45889999999999999999
Q ss_pred CCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHh
Q 020360 79 ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 79 Aa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~L 126 (327)
+++||..|+++|+++++||++++..+..+|++|.|++++++++|+++|
T Consensus 188 a~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 188 AAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHH
Confidence 999999999999999999999999888899999999999999998876
No 11
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=99.90 E-value=5.1e-24 Score=200.28 Aligned_cols=124 Identities=32% Similarity=0.525 Sum_probs=111.3
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc-eeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCC
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA-KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPAC 80 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG-~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa 80 (327)
.+|..|+..|..+........ ...|+|+ .||+ .|||+||||||++|.+.++.+.+.+++||++||+||||.|+|++
T Consensus 123 ~~C~~C~~~~~~~~~~~~~~~-~~~p~C~--~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa 199 (250)
T COG0846 123 VRCSKCGNQYYDEDVIKFIED-GLIPRCP--KCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAA 199 (250)
T ss_pred eEeCCCcCccchhhhhhhccc-CCCCcCc--cCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChh
Confidence 379999999986653332221 2479999 8999 99999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhcc
Q 020360 81 NLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 81 ~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
.+|..+++.|+.+++||+++++++..+|+.|+++++++++.|++.+..
T Consensus 200 ~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~a~~~~~~l~~~~~~ 247 (250)
T COG0846 200 GLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGEVLPLLLEELLK 247 (250)
T ss_pred hhhHHHHhcCCEEEEECCCcccCcchhHHHHHhhHHHHHHHHHHHhhh
Confidence 999888999999999999999999999999999999999999998753
No 12
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=99.89 E-value=3.9e-23 Score=189.22 Aligned_cols=115 Identities=30% Similarity=0.481 Sum_probs=103.8
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|..+... ....+|+|+ .|||.|||+||||||.+|. .++.+.++++++|++|+|||||+|.|+..
T Consensus 110 ~~C~~C~~~~~~~~~~----~~~~~p~C~--~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~ 182 (224)
T cd01412 110 VRCSSCGYVGENNEEI----PEEELPRCP--KCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAG 182 (224)
T ss_pred cccCCCCCCCCcchhh----hccCCCCCC--CCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHH
Confidence 4799999998765322 123579999 8999999999999999998 78999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHH
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVM 123 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~ 123 (327)
++..++.+|+++++||++++..+..+++.|+|+++++|++|+
T Consensus 183 l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 183 LPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred HHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHhC
Confidence 998888889999999999999999999999999999999874
No 13
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=99.87 E-value=2.5e-22 Score=196.47 Aligned_cols=123 Identities=22% Similarity=0.322 Sum_probs=105.1
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|+.+.....+. ...+|+|+ .|+|.|||+||||||.+|+..+. +.+++++||++|||||||+|+|++.
T Consensus 148 ~~C~~C~~~~~~~~~~~~~~-~~~vP~C~--~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~Paa~ 223 (349)
T PTZ00410 148 ASCIECHTPYDIEQAYLEAR-SGKVPHCS--TCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHPFAL 223 (349)
T ss_pred eEeCCCCCCcchhHHHHHhh-cCCCCCCC--CCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccCHHH
Confidence 47999999998776544332 23579999 89999999999999999998777 8999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCC-------------------------------------------------------CC
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKD-------------------------------------------------------KK 106 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D-------------------------------------------------------~~ 106 (327)
||..+. .|+++|+||++++... ..
T Consensus 224 l~~~a~-~~~pvviIN~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 302 (349)
T PTZ00410 224 LACVVP-KDVPRVLFNLERVGGLMFRFPTDPLTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQFGDYEADPGGVC 302 (349)
T ss_pred HHHHHh-cCCCEEEECccccCCceeeccCCccccchhhhhhhcccCccccccccccccccccccccccccccccCccccc
Confidence 998776 6899999999975421 13
Q ss_pred ccEEEEccHHHHHHHHHHHhccc
Q 020360 107 ASLVIHGFVDKVVAGVMDLLNLR 129 (327)
Q Consensus 107 adl~I~g~~devL~~L~k~Lg~~ 129 (327)
.|+++.|+||+.+-.|++.|||.
T Consensus 303 ~d~~~~g~~~~~~~~~~~~lg~~ 325 (349)
T PTZ00410 303 RDIFFPGDCQESVRRLAEALGLG 325 (349)
T ss_pred cceeecccchHHHHHHHHHhCcH
Confidence 47889999999999999999986
No 14
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=99.87 E-value=2.8e-22 Score=183.29 Aligned_cols=109 Identities=43% Similarity=0.704 Sum_probs=97.6
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.+..+.....+ ....+|+|+ .|||.|||+||||||.+|.. +..+.+++..||++|||||||.|+|++.
T Consensus 110 ~~C~~C~~~~~~~~~~~~~-~~~~~p~C~--~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~ 185 (218)
T cd01407 110 VRCTKCGKEYPRDELQADI-DREEVPRCP--KCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAG 185 (218)
T ss_pred ceeCCCcCCCcHHHHhHhh-ccCCCCcCC--CCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHH
Confidence 4799999999877543222 234589999 89999999999999999998 9999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEcc
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~ 114 (327)
++..+.++|+++++||+++++.|..+|++|+|+
T Consensus 186 l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~~~ 218 (218)
T cd01407 186 LPLYAPERGAPVVIINLEPTPADRKADLVILGD 218 (218)
T ss_pred HHHHHHHCCCeEEEECCCCCCCCccceEEEeCC
Confidence 999988889999999999999999999999985
No 15
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.87 E-value=2.3e-22 Score=185.51 Aligned_cols=106 Identities=26% Similarity=0.382 Sum_probs=96.2
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|+.+... ..|+|+ .|||.|||+||||||.+|.+.+..+.+++++||++|||||||.|+|+++
T Consensus 119 ~~C~~C~~~~~~~~~~-------~~p~C~--~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~ 189 (225)
T cd01411 119 IYCTVCGKTVDWEEYL-------KSPYHA--KCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAG 189 (225)
T ss_pred eEeCCCCCccchhhcC-------CCCCCC--CCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHH
Confidence 4799999988765432 369999 8999999999999999999889999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHH
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKV 118 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~dev 118 (327)
|+..++ +|+++|+||+++++.+..+|++|+| ++++
T Consensus 190 l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~~-~~~~ 224 (225)
T cd01411 190 LIDYRQ-AGANLIAINKEPTQLDSPATLVIKD-AVKV 224 (225)
T ss_pred HHHHHh-CCCeEEEECCCCCCCCcchhehhcc-hhhh
Confidence 997764 7999999999999999999999999 8876
No 16
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=4.7e-22 Score=185.22 Aligned_cols=124 Identities=23% Similarity=0.380 Sum_probs=110.5
Q ss_pred CcCC-CCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCC
Q 020360 2 EACP-SCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPAC 80 (327)
Q Consensus 2 e~C~-~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa 80 (327)
.+|. .|+++|+.+++...+..+ ..|+|+ .|+|++||+||||||.||.++++..+.....+||+|||||||+|+|++
T Consensus 153 s~Ci~~C~~~yp~e~~ka~i~~~-~vpkC~--vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PFA 229 (314)
T KOG2682|consen 153 SHCISSCRHEYPLEWMKAKIMSE-VVPKCE--VCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPFA 229 (314)
T ss_pred eeehhhhcCcCCHHHHHHHHHhc-cCCCCc--hhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeecc
Confidence 4799 599999999988777544 578999 899999999999999999999988888889999999999999999999
Q ss_pred cchhhhhcCCCeEEEEcCCCCCC----CCCccEEEEccHHHHHHHHHHHhccc
Q 020360 81 NLPLKCLRGGGKIVIVNLQKTPK----DKKASLVIHGFVDKVVAGVMDLLNLR 129 (327)
Q Consensus 81 ~Lp~~a~~~G~~lVIINlqpT~~----D~~adl~I~g~~devL~~L~k~Lg~~ 129 (327)
+||..+. ..++.++||.++..- -+..|+.++|+||+....|++.|||.
T Consensus 230 sLpe~vp-~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLGW~ 281 (314)
T KOG2682|consen 230 SLPEKVP-LSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLGWK 281 (314)
T ss_pred cchhhhh-hcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhCcH
Confidence 9998764 568999999998761 23478999999999999999999997
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=99.79 E-value=2.1e-19 Score=162.81 Aligned_cols=107 Identities=46% Similarity=0.705 Sum_probs=96.3
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|..+..... ...|+|+ .|+|.|||+||+|||.+|+..+..+.+++.+||++|+|||||+|.|+..
T Consensus 114 ~~C~~C~~~~~~~~~~~~----~~~p~C~--~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~ 187 (222)
T cd00296 114 VRCTSCGKEYPRDEVLER----EKPPRCP--KCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAAR 187 (222)
T ss_pred cEECCCCCCcchhhhhhc----cCCCCCC--CCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHH
Confidence 469999999887765432 4589999 8999999999999999998878999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCC--CCccEEEEcc
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGF 114 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~ 114 (327)
++..+.+.|+++++||++++..| ..+|++++|+
T Consensus 188 l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~ 222 (222)
T cd00296 188 LLLRAPERGAPVVIINREPTPADALKKADLVILGD 222 (222)
T ss_pred HHHHHHHCCCcEEEECCCCCCCCCCCcceEEEeCC
Confidence 99988888999999999999999 8889988874
No 18
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=1.4e-17 Score=164.45 Aligned_cols=129 Identities=18% Similarity=0.276 Sum_probs=108.7
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc------------------eeeccEEecCCCCChhhHHHHHHHhhhC
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA------------------KLRDTVLDWEDALPPKEMNPAEKHCKIA 64 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG------------------~LRPdVV~FGE~LPe~~l~~A~~~~~~A 64 (327)
.|.+|+..++.+.+.+.+. ....|.|| .|.+ +|||+||||||++|+.++.........+
T Consensus 205 sCt~C~~k~~~~~~~~~~~-~~~vp~CP--~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~ 281 (412)
T KOG2684|consen 205 SCTKCGYKKPFEELREDIR-NQEVPVCP--DCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDEC 281 (412)
T ss_pred eecccccccChHHHHHHHh-cCcCccCc--ccccccccccCccccccccCccccccceEEecCCCChHHHhhhhcccccc
Confidence 6999999988886665443 34579999 7854 9999999999999998776666666778
Q ss_pred CEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhcccCCCcccc
Q 020360 65 DVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRI 136 (327)
Q Consensus 65 DLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~~IP~~~~~ 136 (327)
||+|||||||.|.|++.++... .+.++.|+||.++.+ ...+|+-+.|+||++...+.+.+||.+|.-.-.
T Consensus 282 DllIviGTSLKV~pV~~iv~~~-~~~vpqIliNr~~v~-h~efd~~ll~~CD~v~~~l~~~~g~~~~~~~~~ 351 (412)
T KOG2684|consen 282 DLLIVIGTSLKVRPVAEIVKSF-PAKVPQILINRDPVP-HAEFDVELLGDCDDVIRLLCQKCGWLKPLLSLN 351 (412)
T ss_pred ceEEEeCCccccccHHHHHhhh-cccCcEEEecCcccc-ccccChhhccchHHHHHHHHhhccccchHhhhh
Confidence 9999999999999999999764 355699999999877 466788899999999999999999999876543
No 19
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=1.6e-17 Score=154.99 Aligned_cols=95 Identities=24% Similarity=0.331 Sum_probs=90.9
Q ss_pred CCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC
Q 020360 26 SRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK 105 (327)
Q Consensus 26 ~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~ 105 (327)
.|.|. .|||.|||+|+||||++|.+..+.+.+.+++||-+||+||||+|+...++...|+..+.++.|+|..||..|.
T Consensus 211 IPeC~--~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~ 288 (305)
T KOG2683|consen 211 IPECE--KCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADD 288 (305)
T ss_pred CCccc--ccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh
Confidence 58999 8999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEccHHHHHHHH
Q 020360 106 KASLVIHGFVDKVVAGV 122 (327)
Q Consensus 106 ~adl~I~g~~devL~~L 122 (327)
.|++.|...|+++|+++
T Consensus 289 ~a~lKl~~r~gdvl~~~ 305 (305)
T KOG2683|consen 289 MATLKLNYRIGEVLKEM 305 (305)
T ss_pred eeeeeecchHhhhhhcC
Confidence 99999999999998753
No 20
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=99.66 E-value=1e-16 Score=141.95 Aligned_cols=73 Identities=41% Similarity=0.757 Sum_probs=59.5
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCccccc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITP 78 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~P 78 (327)
.+|..|+++|..+.....+. ....|+|+ .|+|.|||+||||||.+| +.+..|.+++++|||+|||||||+|+|
T Consensus 106 ~~C~~C~~~~~~~~~~~~~~-~~~~~~C~--~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 106 LRCSKCGKEYDREDIVDSID-EEEPPRCP--KCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp EEETTTSBEEEGHHHHHHHH-TTSSCBCT--TTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred eeecCCCccccchhhccccc-cccccccc--ccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 47999999998877655443 33568999 899999999999999999 778999999999999999999999998
No 21
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=96.86 E-value=0.004 Score=52.46 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=50.2
Q ss_pred HHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHH
Q 020360 55 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGV 122 (327)
Q Consensus 55 ~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L 122 (327)
..+.+.+++||++|++|+++.-........ ......++|-||.++....+ ..++.|.|++..++.+|
T Consensus 69 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 69 PAANEALEQADLVLAIGTRLSDFNTYGFSP-AFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHHSSEEEEESSSSSTTTTTTTTG-CSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCcccccccccc-ccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 457778899999999999986655544322 12223489999999887653 46899999999998876
No 22
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=96.85 E-value=0.0077 Score=48.40 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=57.3
Q ss_pred eeeEEEEeeccCCCCcccceeEEEEecCCccccccccccCCCeEEEEeeecccceeEEEEEeecCCCCCCcceeeeeecc
Q 020360 154 VNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDF 233 (327)
Q Consensus 154 ~~w~l~~~~v~~~~~p~~~ik~v~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~ 233 (327)
-+|++-+.+.++. ....+|++|....-..-.---.+++.+||.|.... =++|+|.|++.|.+..+.....|.|...|
T Consensus 2 h~W~v~Vr~~~~~-d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~G--WGeF~i~I~i~f~~~~~~~~~~~~h~L~l 78 (84)
T PF03366_consen 2 HKWTVYVRGLDNE-DLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTETG--WGEFEIPIKIHFKDPSNEKPVTIQHDLKL 78 (84)
T ss_dssp EEEEEEEEECCCT---TTTEEEEEEES-TTSSS-EEECSSTTEEEEEEE--SS--EEEEEEECCCGGCTCEEEEEEE--S
T ss_pred cEEEEEEEeCCCC-CccceEEEEEEECCCCCCCCceEecCCCCEEEEeE--eccEEEEEEEEEeCCCCCCcEEEEEEEEc
Confidence 3699999999888 47999999999653221111247899999998443 48999999999999888888999998888
Q ss_pred ccC
Q 020360 234 KVP 236 (327)
Q Consensus 234 ~~~ 236 (327)
+..
T Consensus 79 ~~~ 81 (84)
T PF03366_consen 79 HQD 81 (84)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 23
>PRK08322 acetolactate synthase; Reviewed
Probab=94.91 E-value=0.074 Score=54.74 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=52.8
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+++||++|++||++.-.+...+. ...+.++|.||.++...+ ...++.|.||+..+|..|.+.|.
T Consensus 255 ~~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 255 YVHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 3556778999999999998766544332 123568999998877644 35689999999999999988774
No 24
>PRK07524 hypothetical protein; Provisional
Probab=94.85 E-value=0.054 Score=55.73 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=51.9
Q ss_pred HHHHHHhhhCCEEEEEccCcccccCCc-chhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhcc
Q 020360 55 NPAEKHCKIADVVLCLGTSLQITPACN-LPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 55 ~~A~~~~~~ADLvLVLGTSLqV~PAa~-Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
..+.+.+++|||+|++||++....... .... ...+++++-||.++.... ...++.|.||+..+|.+|.+.|..
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 330 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGG-FPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPG 330 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCccccccccccc-cCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccc
Confidence 356677889999999999985443321 1111 122467898998876433 347899999999999999998864
No 25
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.73 E-value=0.079 Score=55.14 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=53.1
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++|||+|+|||++..+........ ....++|.||.++....+ ..++.|.||+..+|.+|.+.|.
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAKY--CPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhhc--CCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 455677899999999999877665443222 224579999988876543 4689999999999999988775
No 26
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.72 E-value=0.069 Score=55.59 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=53.5
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhcc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
.+.+.+.+||++|+||+++.-......... ..+.++|-||.++.... ...++.|.||+..+|..|++.|..
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~ 337 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDDRTTNNLEKY--CPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDE 337 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhhh
Confidence 456677899999999999876655443222 23467999998876543 346899999999999999988753
No 27
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.57 E-value=0.086 Score=55.44 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=52.3
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC--CCCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~--D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+.+|||+|+|||++.......+... ..+.++|-||.++... ....++.|.||+..+|++|++.|.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~ 354 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDEF--ASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSL 354 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhhc--CCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhh
Confidence 455677899999999999865444333222 2356789999887653 335789999999999999998884
No 28
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.53 E-value=0.089 Score=55.14 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHh
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~L 126 (327)
.+...+++||++|++|++|.-......... ..+.++|.||.++.... ...++.|.||+..+|.+|.+.|
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWANRHTGSVDVY--TEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCccccc--CCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 345677899999999999865554333221 23567999998876643 3568999999999999998876
No 29
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.52 E-value=0.089 Score=54.63 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=53.1
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+++||++|+||+++........... ....++|.||.++..... ..++.|.|++.++|..|++.|.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAKY--CPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLE 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhh
Confidence 355677899999999999877765444322 234579999988765443 4689999999999999998774
No 30
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.42 E-value=0.1 Score=54.22 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=52.2
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+.+|||+|++|+++.-.+....... ...+.+++.||.++..... ..++.|.|++..+|..|++.|.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEM-VETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhccccccc-cCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 45567799999999999876665443221 1224589999988776443 4689999999999999988774
No 31
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=94.37 E-value=0.13 Score=53.99 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=51.8
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC--CCCCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP--KDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~--~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+++||++|++||++.......+... ..+.++|.||.++.. .....++.|.|++.++|..|.+.|.
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~--~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDSF--APDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 455677899999999999876543332211 234578889988753 3445789999999999999998774
No 32
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=94.30 E-value=0.14 Score=53.57 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=51.6
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC--CCCCccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP--KDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~--~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+.+|||+|++|+++.-......... ..+.++|.||.++.. .....++.|.+|+..+|..|++.|.
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLDEF--ACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHhHc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 45567899999999999866554333221 235689999988764 3345689999999999999998775
No 33
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=94.26 E-value=0.13 Score=52.91 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=51.0
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++|||+|++|+++.-+...... .....++|.||.++.... ...++.|.|++..+|..|.+.|.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIP 325 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhc
Confidence 3456788999999999997644332222 112458999999887644 34689999999999999988774
No 34
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.22 E-value=0.12 Score=53.92 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=52.5
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++||++|++|+++........... ..+.++|.||.++..... ..++.|.|++.++|..|++.|+
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~~--~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAKF--CPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 355677899999999999876655443222 224579999988776543 4689999999999999988774
No 35
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.17 E-value=0.12 Score=53.80 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=51.6
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+.+||++|+||+++.-.....+... ....++|.||.++.... ...++.|.|++.++|..|.+.|.
T Consensus 263 ~~~~l~~aD~vl~lG~~l~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (563)
T PRK08527 263 ANMAMSECDLLISLGARFDDRVTGKLSEF--AKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK 333 (563)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 45577899999999999876554333222 22457899998877543 34679999999999999998774
No 36
>PRK06154 hypothetical protein; Provisional
Probab=94.16 E-value=0.13 Score=53.61 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=50.9
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC--CCCccEEEEccHHHHHHHHHHHhcc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~--D~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
.+.+.+++||++|+|||+|.-+.... . ...+.++|.||.++... ....++.|.||+.++|..|++.|..
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~~---~-~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 343 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYGL---P-MPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRR 343 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCc---c-CCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhhh
Confidence 45667889999999999987532211 1 12356888888877643 3457899999999999999998753
No 37
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.15 E-value=0.13 Score=54.04 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=52.3
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++|||+|+|||++.-......... ..+.++|.||.++..... ..++.|.|++..+|.+|++.|.
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 344 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDAF--SPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWK 344 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 355677899999999999865544333222 234578999988876443 4789999999999999998774
No 38
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.12 E-value=0.13 Score=53.77 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=51.8
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+.+|||+|++|+++........... ....++|.||.++....+ ..++.|.||+..+|.+|.+.|+
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDDRVTGKLELF--SPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCccccc--CCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 355678899999999999876554333221 123578889988776543 5689999999999999988774
No 39
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=93.98 E-value=0.12 Score=53.44 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=53.8
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhh-hcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhcccCCC
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKC-LRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNLRIPP 132 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a-~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg~~IP~ 132 (327)
.+.+.+++|||+|++|+++.-.+...+.... .....+++.||.++...+ ...++.|.|++..++++|.+.+....+.
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~ 342 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEPPASPA 342 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcccccchh
Confidence 4556778999999999998665543331111 012457899998876543 3568999999999999998765433344
Q ss_pred c
Q 020360 133 Y 133 (327)
Q Consensus 133 ~ 133 (327)
|
T Consensus 343 ~ 343 (557)
T PRK08199 343 W 343 (557)
T ss_pred H
Confidence 4
No 40
>PLN02470 acetolactate synthase
Probab=93.89 E-value=0.16 Score=53.06 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=51.4
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+++|||+|+|||++........... ....++|.||.++.... ...++.|.|++..+|..|.+.|.
T Consensus 272 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 272 YANYAVDSADLLLAFGVRFDDRVTGKLEAF--ASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhc--CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 345677899999999999865544333221 12357888998876543 34689999999999999988775
No 41
>PRK05858 hypothetical protein; Provisional
Probab=93.81 E-value=0.21 Score=51.59 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++||++|++||++........ . ..+.++|.|+.++..... ..++.|.|++..+++.|.+.|.
T Consensus 255 ~~~~~l~~aD~vl~vG~~~~~~~~~~~--~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (542)
T PRK05858 255 ARGKALGEADVVLVVGVPMDFRLGFGV--F--GGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGG 324 (542)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccc--c--CCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcc
Confidence 345677899999999998754332221 1 224689999988765443 4689999999999999988775
No 42
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.68 E-value=0.19 Score=51.96 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=49.3
Q ss_pred HHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC--CCCccEEEEccHHHHHHHHHHHhc
Q 020360 58 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~--D~~adl~I~g~~devL~~L~k~Lg 127 (327)
...+++|||+|++|+++.-++....... ...+.++|-|+.++... ....++.|.|++.++|..|.+.|.
T Consensus 260 ~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 330 (554)
T TIGR03254 260 SFALAEADVVMLVGARLNWLLSHGKGKL-WGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAK 330 (554)
T ss_pred HHHHhcCCEEEEECCCCchhhccCchhh-cCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhh
Confidence 3467899999999999875543322111 12246788888776543 345689999999999999999884
No 43
>PRK08266 hypothetical protein; Provisional
Probab=93.61 E-value=0.12 Score=53.16 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=50.1
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC-CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D-~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+.+||++|++||++... ...... ...+.+++.||.++.... ...++.|.||+..+|..|++.|.
T Consensus 256 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 256 AAYELWPQTDVVIGIGSRLELP-TFRWPW--RPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHHHhCCEEEEeCCCcCcc-cccccc--cCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 3456778999999999998755 322211 223457888887765533 35689999999999999998875
No 44
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=93.59 E-value=0.16 Score=52.95 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=48.9
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC-----CCCccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK-----DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~-----D~~adl~I~g~~devL~~L~k~Lg 127 (327)
+.+.+++|||+|++||.|...+.... ...++++|-||.++... ....++.|.||+..++.+|.+.|.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~----~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKIR----PDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCcccccc----CCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 44566899999999998754332211 12345788898887542 345689999999999999999886
No 45
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.52 E-value=0.2 Score=52.08 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=51.3
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC-CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D-~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++|||+|++||.+.-.....+... ..+.++|.||.++.... ...++.|.|++..+|++|.+.|.
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSLY--PEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALR 347 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCcccccccccc--CCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhh
Confidence 456677899999999999876655443221 23468999998875432 22368899999999999988774
No 46
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.40 E-value=0.17 Score=52.83 Aligned_cols=72 Identities=28% Similarity=0.267 Sum_probs=50.7
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCc-chhhhhcCCCeEEEEcCCCCCC--CCCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACN-LPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~-Lp~~a~~~G~~lVIINlqpT~~--D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++||++|+|||+|.-..... ........++++|-||.++... ....++.|.||+..+|..|++.|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333 (588)
T ss_pred HHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 35567789999999999985332210 0001112357899999887654 335789999999999999999885
No 47
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.34 E-value=0.2 Score=51.81 Aligned_cols=69 Identities=12% Similarity=0.256 Sum_probs=49.7
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHh
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~L 126 (327)
.+...+++||++|++||++.-.-...+... ..+.++|.||.++.... ...++.|.|++..+++.|.+.+
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLNTF--APHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCcccc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 455677899999999999865433222111 22457899998876543 3568999999999999998765
No 48
>PRK08611 pyruvate oxidase; Provisional
Probab=93.32 E-value=0.21 Score=52.22 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=48.3
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++|||+|++||++..... + ..+.++|.||.++.... ...++.|.||+..+|..|.+.|.
T Consensus 260 ~a~~~l~~aDlvl~iG~~~~~~~~--~-----~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 260 PAYEAMQEADLLIMVGTNYPYVDY--L-----PKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred HHHHHHHhCCEEEEeCCCCCcccc--C-----CCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence 355677899999999998743221 1 12357899998876543 34688999999999999988775
No 49
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.32 E-value=0.22 Score=52.06 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=50.8
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+.+||++|++||++.-.....+.. ...+.++|.||.++.... ...++.|.|++..+|..|.+.|.
T Consensus 264 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 334 (591)
T PRK11269 264 GNATLLASDFVLGIGNRWANRHTGSVEV--YTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAR 334 (591)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCchhh--cCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhh
Confidence 4566789999999999976544333321 123567899998877643 34689999999999999988773
No 50
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.25 E-value=0.2 Score=52.39 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=51.4
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++|||+|+|||++............ ..+.++|-||.++.... ...++.|.|++..+|..|++.|.
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 352 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAHFA-SRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQ 352 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhcC-CCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 3556778999999999998665433221111 22468999998876543 34689999999999999998773
No 51
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.24 E-value=0.21 Score=51.67 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=51.4
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+.+||++|+||+.+.-.....+... ..+.++|.||.++.... ...++.|.|++..+|..|.+.|.
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAKF--APNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 455677899999999999865543333221 12467899998876533 34689999999999999999874
No 52
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.23 E-value=0.23 Score=51.56 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=51.2
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhcc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
.+...+++||++|++||++.-.-....... ..+.++|-||.++.... ...++.|.||+..+|+.|++.|..
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 338 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKLASF--APNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQY 338 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccc
Confidence 355678899999999999854333222111 23467888998876433 356899999999999999998753
No 53
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.20 E-value=0.25 Score=51.22 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=51.2
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+++||++|++|+++.......... .....++|.||.++.... ...++.|.|++.++|.+|.+.|.
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDDRAIGKTEQ--FCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVE 341 (564)
T ss_pred HHHHHHhCCEEEEECCCCCccccCCHhh--cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhc
Confidence 4557789999999999987654433321 123457899998877644 34689999999999999988764
No 54
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=93.06 E-value=0.24 Score=51.60 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=50.5
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++||++|+|||++.-......... ....++|.||.++....+ ..++.|.||+..+|..|.+.|.
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 340 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKTF--AKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPT 340 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhc
Confidence 355677899999999999864433222111 124579999988765433 4689999999999999988774
No 55
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.05 E-value=0.27 Score=51.40 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=50.5
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+++||++|++||.+.-......... ..+.+++.||.++.... ...++.|.||+..+|+.|++.|.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 333 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISSF--APNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELM 333 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCcccc--CCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhh
Confidence 455677899999999999754333222111 23457888998876543 34689999999999999998774
No 56
>PRK08617 acetolactate synthase; Reviewed
Probab=93.01 E-value=0.24 Score=51.15 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=49.8
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
+.+.+.+|||+|++|+++.-+....... ..+.++|.||.++...+. ..++.|.|++..+|..|.+.+.
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~---~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 331 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWNS---EGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD 331 (552)
T ss_pred HHHHHHhCCEEEEecCcccccccccccc---CCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhh
Confidence 4556789999999999875443222211 124589999988876543 5689999999999999988765
No 57
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=92.98 E-value=0.32 Score=50.65 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=48.8
Q ss_pred HHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC--CCCccEEEEccHHHHHHHHHHHhc
Q 020360 58 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~--D~~adl~I~g~~devL~~L~k~Lg 127 (327)
...+.+|||+|+||+++.-.+....... ...+.++|.|+.++... ....++.|.|++..++++|++.|.
T Consensus 267 ~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 337 (569)
T PRK09259 267 SLALANADVVLLVGARLNWLLSHGKGKT-WGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLK 337 (569)
T ss_pred HHHHhcCCEEEEeCCCCchhcccCchhc-cCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhh
Confidence 3457899999999999854443222111 11346788888776653 345679999999999999998875
No 58
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.92 E-value=0.22 Score=52.25 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=53.4
Q ss_pred HHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhcc
Q 020360 55 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 55 ~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg~ 128 (327)
..+...+.+|||+|+|||.+.=.... +...... .. ++-|+.++...++ ..++-|.|++..+|.+|.+.|.-
T Consensus 258 ~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~-~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~ 330 (550)
T COG0028 258 KAANEALEEADLLLAVGARFDDRVTG-YSGFAPP-AA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKP 330 (550)
T ss_pred HHHHHHhhcCCEEEEecCCCcccccc-hhhhCCc-CC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhh
Confidence 45677888999999999999755555 3333322 22 8888888776554 57999999999999999998763
No 59
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=92.91 E-value=0.24 Score=51.58 Aligned_cols=72 Identities=28% Similarity=0.255 Sum_probs=50.1
Q ss_pred HHHHHhhhCCEEEEEccCcccccCC-cchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPAC-NLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa-~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+++|||+|++||.+.-.... .........++++|-||.++.... ...++.|.|++..+|.+|++.|.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 3556788999999999998532111 000001223568999988776543 35689999999999999999885
No 60
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=92.81 E-value=0.25 Score=51.71 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=48.5
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+++|||+|+|||++... .+. .+.++|.||.++..... ..++.|.||+..++.+|++.|+
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~---~~~-----~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYD---QFL-----PDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChh---hcC-----CCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 3556778999999999987421 111 23478999988776543 4689999999999999998885
No 61
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=92.56 E-value=0.29 Score=51.30 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=48.8
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++|||+|++||++... .+.. ...++++|-||.++.... ...++.|.||+..++.+|++.|.
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~---~~~~--~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYS---EFLP--KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHH---hcCC--CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 4566788999999999997422 1110 112468999988876543 34678899999999999998775
No 62
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.48 E-value=0.28 Score=51.19 Aligned_cols=68 Identities=13% Similarity=0.284 Sum_probs=47.5
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++|||+|++||++.... +... ...+..+|.||.++.... ...++.|.||+..+|.+|...|.
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~~~~---~~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYPFAE---VSKA-FKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVE 326 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCCccc---cccc-cCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 34567789999999999874322 2111 123345588888765533 34679999999999999988775
No 63
>PRK07064 hypothetical protein; Provisional
Probab=92.35 E-value=0.32 Score=50.07 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=50.6
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC--CCCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~--D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+.+|||+|++|+++.-.+...... ....+++.||.++... ....++.|.|++..+|..|.+.|.
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~---~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYSL---ALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCccccccccc---CCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence 35567789999999999987555433211 1234788888886643 345689999999999999988775
No 64
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=91.56 E-value=0.36 Score=50.41 Aligned_cols=81 Identities=26% Similarity=0.299 Sum_probs=59.4
Q ss_pred CCCCChhhHHHHHH-HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC-C--CCccEEEEccHHHHHHH
Q 020360 46 EDALPPKEMNPAEK-HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK-D--KKASLVIHGFVDKVVAG 121 (327)
Q Consensus 46 GE~LPe~~l~~A~~-~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~-D--~~adl~I~g~~devL~~ 121 (327)
++..|-. +..|.+ ++++||++|++|+-|.-.=...+|.. -.+..+.|.||..+..+ . -+.++-|+||+..++.+
T Consensus 259 ~d~hPl~-v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk-~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~ 336 (571)
T KOG1185|consen 259 PDNHPLN-VSSARSLALKKADVVLLAGARLNWILHFGLPPK-WSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQ 336 (571)
T ss_pred CCCCchh-hhHHHHHHHhhCCEEEEecceeeEEEecCCCCc-cCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHH
Confidence 3444543 344444 66899999999999987766666543 24567888887765543 2 36889999999999999
Q ss_pred HHHHhcc
Q 020360 122 VMDLLNL 128 (327)
Q Consensus 122 L~k~Lg~ 128 (327)
|.+.|+-
T Consensus 337 L~e~l~~ 343 (571)
T KOG1185|consen 337 LVEELQD 343 (571)
T ss_pred HHHHhcC
Confidence 9999974
No 65
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=91.56 E-value=0.31 Score=49.08 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=48.8
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
+.+.+ +|||+|++|+.+.-.....+. ...+.++|.|+.++...+. ..++.|.|++..++..|.+.+.
T Consensus 269 ~~~~~-~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 269 LREEL-QPDLVIRFGGPPVSKRLRQWL---ARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLK 337 (432)
T ss_pred hhhhC-CCCEEEEeCCCcchhHHHHHH---hCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccC
Confidence 33445 899999999998544333221 1234688999988876653 4689999999999999988874
No 66
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=91.18 E-value=0.51 Score=49.09 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=47.6
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+++|||+|++|+++... .+ .....++|.||.++.... ...++.|.||+..++..|.+.|.
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~---~~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPYR---QF----YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLE 324 (574)
T ss_pred HHHHHHhCCEEEEECCCCCcc---cc----cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhh
Confidence 456778999999999987432 11 112357899998876543 34689999999999999988764
No 67
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.00 E-value=0.46 Score=49.47 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=50.7
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhcc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
.+.+.+.+||++|++||++.-......... ..+.+++.||.++.... ...++.|.|++..+|..|.+.++.
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~~ 346 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAYF--AKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGK 346 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhc--CCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhhc
Confidence 355677899999999999865433322211 12457888888876433 346899999999999999887753
No 68
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=89.98 E-value=0.61 Score=48.07 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=48.6
Q ss_pred HHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC-CCccEEEEccHHHHHHHHHHHhc
Q 020360 55 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 55 ~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D-~~adl~I~g~~devL~~L~k~Lg 127 (327)
..+.+.+++|||+|++|+++.-+........ ...+.++|.||.++.... ...++.|.|++..++.+|.+.|.
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVEGPGPH-LPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccCCcccc-CCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 3455678899999999997422221111111 122467888888875432 23678899999999999999885
No 69
>PLN02573 pyruvate decarboxylase
Probab=89.31 E-value=0.7 Score=48.50 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=47.8
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++|||+|+||++|.-......... ..+.++|.||.++.......++-+. ++..++..|.+.|.
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l~ 352 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSLL--LKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRVK 352 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCccccccccc--CCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHhh
Confidence 355677899999999999866554333221 2346799999988775543344433 68888898888775
No 70
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=88.38 E-value=0.44 Score=49.27 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+++|||+|+|||+|.-........... ..++|-||.++..... ..++.| +|+..+|.+|.+.|+
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~--~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~ 335 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQLT--PEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG 335 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeeccCC--cccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc
Confidence 45667889999999999986544333311111 2367888887654322 345556 899999999998874
No 71
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=87.92 E-value=1.2 Score=46.15 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=43.8
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHH
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGV 122 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L 122 (327)
.+.+.+++|||+|++||++.... + ...+.++|.||.++.... ...++.|.|++..+|..+
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~---~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~ 313 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVN---F----LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNID 313 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhh---c----CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHH
Confidence 35567789999999999985432 1 112458999998876644 356899999999999543
No 72
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=87.73 E-value=1.3 Score=46.27 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=58.4
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHh-cccCCC
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL-NLRIPP 132 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~L-g~~IP~ 132 (327)
.|...+.+|||+|-|||-++=.-..+-... ...+.+++-||.++-..-++-.+-+-+|+...|.+|...| ||+.+.
T Consensus 288 AAN~~A~~ADlVigiGTR~~DFTTgS~alF-~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~ 364 (617)
T COG3962 288 AANRAAEEADLVIGIGTRLQDFTTGSKALF-KNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAA 364 (617)
T ss_pred HHHhhhhhcCEEEEecccccccccccHHHh-cCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhcccccch
Confidence 466677899999999999986666655332 3456788888888776556666778999999999999988 666654
No 73
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=86.08 E-value=1.5 Score=44.43 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=40.6
Q ss_pred HHhhhCCEEEEEccCccccc-CC-cchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQITP-AC-NLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~P-Aa-~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+.+||++|++|+.....- .. .....++++|+++|+||+..|.....+|++|.
T Consensus 166 ~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~ 221 (461)
T cd02750 166 ADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVP 221 (461)
T ss_pred hHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEec
Confidence 45678999999998865442 11 12234678899999999999998888998773
No 74
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=84.87 E-value=1.7 Score=43.64 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=48.8
Q ss_pred hCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 63 IADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 63 ~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT-~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
..+|.|.+|-|.++.=.+.+ +.-..||-||.++. +.-..+|+-|-||.-+++|+|.+.|.
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CCcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 35899999999988755555 12236889999976 56788999999999999999999875
No 75
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.81 E-value=1.4 Score=44.80 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=39.9
Q ss_pred HhhhCCEEEEEccCcccccC---CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 60 HCKIADVVLCLGTSLQITPA---CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PA---a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
.+.+||++|++|+.....-. ......++++|+++|+|++..|.....+|.+|.
T Consensus 157 d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~ 212 (477)
T cd02759 157 DWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP 212 (477)
T ss_pred hhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence 45699999999988654422 122234567899999999999988888998774
No 76
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=84.29 E-value=1.9 Score=42.50 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=48.1
Q ss_pred hCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 63 IADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 63 ~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT-~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
..+|.|.+|-|.+|.=...+ +.-..||-||.+|. |.-..+|+-|-||.-+++|.|.+.|.
T Consensus 252 ~P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred CccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 34899999999988755554 22236889999976 56788999999999999999999874
No 77
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=83.88 E-value=2 Score=42.36 Aligned_cols=59 Identities=32% Similarity=0.344 Sum_probs=47.2
Q ss_pred CCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 64 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 64 ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT-~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+|.|.+|-|.++.=.+.+ +.-..||-||.+|. +.-+.+|+-|-||.-+++|+|.+.|.
T Consensus 252 P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 252 SDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred ccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 4788999998887755444 22236889999976 56788999999999999999999874
No 78
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=83.20 E-value=2.5 Score=41.84 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=49.8
Q ss_pred hCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 63 IADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 63 ~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT-~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
..||.|.+|=|.++.=.+.+ +.-..||-||.++. |.-..||+-|-||.-+++|.|.+.|+
T Consensus 251 ~P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 45899999999998866665 22237889999976 56688999999999999999999986
No 79
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=82.96 E-value=1.4 Score=45.34 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=41.3
Q ss_pred HHhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+.+||++|++|+..... |. ......++++|+++|.|++..|.....+|++|.
T Consensus 153 ~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~ 208 (501)
T cd02766 153 EDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ 208 (501)
T ss_pred HHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence 4567999999999886542 32 122335678899999999999998888998774
No 80
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=82.58 E-value=1.9 Score=44.74 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=43.0
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHH
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAG 121 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~ 121 (327)
+...+++||++|++|+.+.-.....+ . .....+++.||.++...+. ..++.|.+++.++|..
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~--~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQW--L-ADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHH--H-hcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 44567899999999999843322111 1 1123378899988776543 5678999999998876
No 81
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.51 E-value=2.2 Score=43.45 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=39.5
Q ss_pred HHhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+.+||++|++|+..... |. ......++++|+++|.|++..+.....+|++|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 3456899999999876443 11 111223567899999999999988788898875
No 82
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=82.23 E-value=0.85 Score=50.02 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCc----eeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcc-cccC-Ccchhhhhc-CCCeEEEEc
Q 020360 25 TSRRCSDLKCGA----KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQ-ITPA-CNLPLKCLR-GGGKIVIVN 97 (327)
Q Consensus 25 t~P~C~~~~CgG----~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLq-V~PA-a~Lp~~a~~-~G~~lVIIN 97 (327)
.+..|.. -|.. -|-++|=.+++.= ..+.+..|||+|+||+.-. -.|. +.....|++ +|.+|+++.
T Consensus 386 NVDncsR-~CqsPa~~gL~rTvG~g~dsg-------si~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D 457 (978)
T COG3383 386 NVDNCSR-YCQSPATDGLFRTVGSGADSG-------SIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVID 457 (978)
T ss_pred Ccccchh-hccCcccccchheeeccCCCC-------CHHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEec
Confidence 3456652 5653 4556666666543 3356789999999998532 1222 112234555 899999999
Q ss_pred CCCCCCCCCccEEEEccHHHHHHHH
Q 020360 98 LQKTPKDKKASLVIHGFVDKVVAGV 122 (327)
Q Consensus 98 lqpT~~D~~adl~I~g~~devL~~L 122 (327)
+.++.....||++++-..+.=+..|
T Consensus 458 ~R~~emaerAdlf~~pkpGtd~a~l 482 (978)
T COG3383 458 PRKHEMAERADLFLHPKPGTDLAWL 482 (978)
T ss_pred cchhHHHHhhhcccCCCCCccHHHH
Confidence 9999999999999986655433333
No 83
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=82.13 E-value=1.6 Score=45.66 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=40.6
Q ss_pred HHhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+.+||++|++|+..... |. ......++++|+++|+|++..|.....+|++|.
T Consensus 155 ~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ 210 (567)
T cd02765 155 TDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVP 210 (567)
T ss_pred hHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEec
Confidence 4457999999999986444 22 122234678899999999999998888898764
No 84
>KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=80.51 E-value=6.4 Score=37.68 Aligned_cols=77 Identities=13% Similarity=0.256 Sum_probs=55.7
Q ss_pred cceeeEEEEeeccCCCCcccceeEEEEecCCccccccccccCCCeEEEEeeecccceeEEEEEeecCCCCCCcceeeeee
Q 020360 152 KFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPF 231 (327)
Q Consensus 152 ~~~~w~l~~~~v~~~~~p~~~ik~v~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~ 231 (327)
-.-.|++-+.+..... ...|++.|....-+...----++..+||.++ |+.. +.|.|.++.-|.|.-++..+.+.|.+
T Consensus 35 ~th~w~v~v~~~~~ed-~~~~V~KV~f~LH~sf~~P~Rvv~~pPf~i~-EtGw-geF~i~i~i~f~d~~~~~~v~~~~~l 111 (249)
T KOG3149|consen 35 FTHIWEVYVRGPGKED-ISAFVDKVVFKLHESFPNPRRVVESPPFEIT-ETGW-GEFEIQIEIFFTDDANEKKVTLYHDL 111 (249)
T ss_pred cceeeEEEecCcCccc-cceeeeeeeeecccccccccccccCCCceEE-eecc-ccceEEEEEEeccCCCCceeeeeeeE
Confidence 4466888776654444 7889999988654433333348999999999 5555 89999999999987777776665544
No 85
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=79.47 E-value=4 Score=39.75 Aligned_cols=65 Identities=26% Similarity=0.309 Sum_probs=42.2
Q ss_pred HHhhhCCEEEEEccCcccc-cCCc-chhhhh-cCCCeEEEEcCCCCCCCCCccEEEEccHH-HHHHHHHHH
Q 020360 59 KHCKIADVVLCLGTSLQIT-PACN-LPLKCL-RGGGKIVIVNLQKTPKDKKASLVIHGFVD-KVVAGVMDL 125 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PAa~-Lp~~a~-~~G~~lVIINlqpT~~D~~adl~I~g~~d-evL~~L~k~ 125 (327)
..+.+||++|++|+.+... |... ....+. ++|++++.|++..|.. .+|.++.-..+ ..+..|++.
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg~~~~~~l~~~ 212 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPLGASLATLLDI 212 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCchhHHHHHHHH
Confidence 3456899999999886432 2111 122333 3499999999998887 78887765554 444444443
No 86
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.76 E-value=3 Score=43.11 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=38.8
Q ss_pred HHhhhCCEEEEEccCcccc-cC-CcchhhhhcC--CCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRG--GGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~--G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+.+||++|++|+..... |. ......+++. |+++|+|++..|.....+|++|.
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~ 210 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLP 210 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeC
Confidence 3457899999999986443 11 1112234555 99999999999998888888773
No 87
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.67 E-value=3.3 Score=41.91 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=39.2
Q ss_pred HhhhCCEEEEEccCccccc-C--CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 60 HCKIADVVLCLGTSLQITP-A--CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~P-A--a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
.+.+||++|++|+-..... . ......++++|+++|+|++..|.....+|++|.
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~ 208 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIP 208 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecC
Confidence 3468999999999865442 1 222234567899999999999988788898764
No 88
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=78.43 E-value=1.9 Score=47.84 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=40.7
Q ss_pred HHhhhCCEEEEEccCcccc--cCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT--PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVI 111 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~--PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I 111 (327)
..+.+||++|++|+..... +.......|+++|+++|.|++..|.....+|++|
T Consensus 220 ~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wl 274 (912)
T TIGR03479 220 DDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWL 274 (912)
T ss_pred hhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeec
Confidence 4557899999999886443 2333344567889999999999999888899775
No 89
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=77.79 E-value=3 Score=43.98 Aligned_cols=54 Identities=26% Similarity=0.389 Sum_probs=38.9
Q ss_pred HHhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+.+||++|++|+..... |. ......++++|+++|.|++..|.....+|.+|.
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~ 206 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIP 206 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccC
Confidence 3567899999999975433 11 112234567899999999999987778887763
No 90
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=77.11 E-value=4.2 Score=44.04 Aligned_cols=54 Identities=22% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHhhhCCEEEEEccCccc--ccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQI--TPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV--~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+.+||++|++|+.... .|...-...++++|+++|.||+..|.....+|.+|.
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~ 206 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVP 206 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecC
Confidence 456789999999985322 122222234567899999999999988888888763
No 91
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=76.84 E-value=1.7 Score=29.22 Aligned_cols=31 Identities=23% Similarity=0.650 Sum_probs=21.1
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceee
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 39 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LR 39 (327)
+|..||+.|....... . .....|| .||+.++
T Consensus 7 ~C~~Cg~~fe~~~~~~---~-~~~~~CP--~Cg~~~~ 37 (41)
T smart00834 7 RCEDCGHTFEVLQKIS---D-DPLATCP--ECGGDVR 37 (41)
T ss_pred EcCCCCCEEEEEEecC---C-CCCCCCC--CCCCcce
Confidence 5999999986543221 1 2457899 8998654
No 92
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=76.31 E-value=2.6 Score=43.75 Aligned_cols=68 Identities=13% Similarity=-0.012 Sum_probs=42.5
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHh
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~L 126 (327)
.+...+++|||+|++||++.-+........ ..+.++|.|+.++..... ..++.| +++.+.|..|++.+
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~~~~--~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVSQRK--IDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHhCCEEEEECCccccccccccccc--CCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 455677899999999999865422111011 123477877776554332 356666 66777777777655
No 93
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.13 E-value=5.9 Score=40.96 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=39.9
Q ss_pred HHhhhCCEEEEEccCcccccCCc--------chhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQITPACN--------LPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~--------Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+.+||++|++|+-....-... ....++++|+++|+|++..|..-..||++|.
T Consensus 152 ~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ 213 (539)
T cd02762 152 PDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLF 213 (539)
T ss_pred hhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeC
Confidence 34678999999998765542111 2234567899999999999988788898773
No 94
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.76 E-value=5 Score=42.48 Aligned_cols=43 Identities=19% Similarity=0.418 Sum_probs=29.6
Q ss_pred HHhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCC
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKT 101 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT 101 (327)
+.+.+||++|++|+-.... |. ......++++|+++|+||+-.+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 4567899999999864322 21 1112346788999999999765
No 95
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=73.78 E-value=6.2 Score=43.23 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=40.7
Q ss_pred HHhhhCCEEEEEccCcccc--c-CCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEc
Q 020360 59 KHCKIADVVLCLGTSLQIT--P-ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 113 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~--P-Aa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g 113 (327)
..+.+||++|++|+..... | .......++++|+++|+|++..|.....+|.+|.=
T Consensus 169 ~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpi 226 (760)
T cd02760 169 ADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPI 226 (760)
T ss_pred chHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCc
Confidence 4557899999999987443 1 11222345678999999999999988889987743
No 96
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=73.10 E-value=2.4 Score=34.65 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=44.7
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEccH
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 115 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~~ 115 (327)
..+.+-|++|++.-|............++++|++++.| +....+..+.+|+.|....
T Consensus 43 ~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 100 (128)
T cd05014 43 GMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPV 100 (128)
T ss_pred CcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCC
Confidence 34567799999999998888888888889999988866 4455677788888877543
No 97
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=73.00 E-value=4.1 Score=42.93 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=38.9
Q ss_pred HHhhhCCEEEEEccCcccccC-----CcchhhhhcCCCeEEEEcCCCCCCCC-CccEEE
Q 020360 59 KHCKIADVVLCLGTSLQITPA-----CNLPLKCLRGGGKIVIVNLQKTPKDK-KASLVI 111 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PA-----a~Lp~~a~~~G~~lVIINlqpT~~D~-~adl~I 111 (327)
..+.+||++|+.|+-....-. ......++++|+++|.|++..|..-. .+|++|
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i 220 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWI 220 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEE
Confidence 445689999999988654422 12233566789999999999988764 788766
No 98
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=72.99 E-value=7.7 Score=40.34 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=56.6
Q ss_pred eccEEecCCCCChhh---HHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCC--------C-eEEEEcCCCCC-C--
Q 020360 39 RDTVLDWEDALPPKE---MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGG--------G-KIVIVNLQKTP-K-- 103 (327)
Q Consensus 39 RPdVV~FGE~LPe~~---l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G--------~-~lVIINlqpT~-~-- 103 (327)
+=||++=+-.+|.+. ++......+++|+.||+|..=.|-|+++--.-..=.| + .+++++..-.+ +
T Consensus 354 HMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAG 433 (462)
T PRK09444 354 HMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAG 433 (462)
T ss_pred cceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCC
Confidence 347888788889873 3445557789999999999999999986421111112 2 34444433221 1
Q ss_pred ------CCCccEEEEccHHHHHHHHHHHh
Q 020360 104 ------DKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 104 ------D~~adl~I~g~~devL~~L~k~L 126 (327)
....+.-+.||+.+.+.+|.+.+
T Consensus 434 v~NpLF~~~nt~MlfGDAK~~~~~l~~~~ 462 (462)
T PRK09444 434 VQNPLFFKENTQMLFGDAKASVDAILKAL 462 (462)
T ss_pred CCCcceecCCceEEeccHHHHHHHHHHhC
Confidence 12234558999999999988754
No 99
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=72.96 E-value=6.1 Score=42.67 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=39.8
Q ss_pred HhhhCCEEEEEccCccc-ccCCcc--hhhhh-cCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 60 HCKIADVVLCLGTSLQI-TPACNL--PLKCL-RGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV-~PAa~L--p~~a~-~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
.+.+||++|++|+-... .|...+ ...++ ++|+++|.|++..+.....+|++|.
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~ 249 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHA 249 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeec
Confidence 45799999999988654 343222 23455 6899999999999988888898773
No 100
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=72.69 E-value=5.6 Score=41.25 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=43.7
Q ss_pred HhhhCCEEEEEccCcccc--cCC--cchhhhhcCCCeEEEEcCCCCCCCCCccEEEE---ccHHHHHHHHHHHh
Q 020360 60 HCKIADVVLCLGTSLQIT--PAC--NLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH---GFVDKVVAGVMDLL 126 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~--PAa--~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~---g~~devL~~L~k~L 126 (327)
.+.+||++|++|+..... +.. .-...++++|+++|+|++..+.....+|++|. |.=..++..|++.|
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~i~PGtD~al~lama~~i 232 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALAIAHVI 232 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeCCCCCcHHHHHHHHHHHH
Confidence 457899999999876332 111 11223467899999999999887778898773 33333444444444
No 101
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=72.36 E-value=2.1 Score=29.33 Aligned_cols=29 Identities=34% Similarity=0.944 Sum_probs=20.8
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCcee
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 38 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~L 38 (327)
.|..||+.|...+... .....|+ .||+.|
T Consensus 3 ~C~~Cg~~Yh~~~~pP-----~~~~~Cd--~cg~~L 31 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNPP-----KVEGVCD--NCGGEL 31 (36)
T ss_dssp EETTTTEEEETTTB-------SSTTBCT--TTTEBE
T ss_pred CcCCCCCccccccCCC-----CCCCccC--CCCCee
Confidence 5999999998776432 1346898 799865
No 102
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=71.94 E-value=3.9 Score=39.27 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=37.9
Q ss_pred HHhhhCCEEEEEccCcccccCC--cchhhhhcCCCeEEEEcCCCCCCCCCccEEE
Q 020360 59 KHCKIADVVLCLGTSLQITPAC--NLPLKCLRGGGKIVIVNLQKTPKDKKASLVI 111 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa--~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I 111 (327)
..+.+||++|++|+.....-.. .....+++.|+++|+|++..+.....+|++|
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i 206 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWL 206 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEee
Confidence 3456899999999876443221 1123455689999999999988777778765
No 103
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=70.63 E-value=7.6 Score=44.00 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=39.8
Q ss_pred HHhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+.+||++|++|+..... |. ......++++|++||.||+..|.....||++|.
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~ 272 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAP 272 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeC
Confidence 3467899999999875432 22 122234678899999999999988888897763
No 104
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=70.52 E-value=8.1 Score=39.39 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=56.7
Q ss_pred eeccEEecCCCCChhhH--HHHHHHh--hhCCEEEEEccCcccccCCcchhhhh--cCCCeEEEEcCCCCCCCCCccEEE
Q 020360 38 LRDTVLDWEDALPPKEM--NPAEKHC--KIADVVLCLGTSLQITPACNLPLKCL--RGGGKIVIVNLQKTPKDKKASLVI 111 (327)
Q Consensus 38 LRPdVV~FGE~LPe~~l--~~A~~~~--~~ADLvLVLGTSLqV~PAa~Lp~~a~--~~G~~lVIINlqpT~~D~~adl~I 111 (327)
=-|.-|+|-+.+|...- ..+.+.+ +++|-.||+|| -|.++||..+. -...|+|-|++-+++-...+|++|
T Consensus 305 GYpf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~s----Dp~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVvi 380 (429)
T COG1029 305 GYPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIAS----DPGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVI 380 (429)
T ss_pred CCceeeecccCCcCCCcccccHHHHHhccCCCeEEEEec----CccccChHHHHHHhhcCCEEEecCCCCcchhhcceec
Confidence 36899999999875311 2344444 56999999999 68899998764 235689999999999889999988
Q ss_pred EccHH
Q 020360 112 HGFVD 116 (327)
Q Consensus 112 ~g~~d 116 (327)
.+-++
T Consensus 381 P~aI~ 385 (429)
T COG1029 381 PSAID 385 (429)
T ss_pred cccee
Confidence 76444
No 105
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=70.35 E-value=3.3 Score=28.88 Aligned_cols=31 Identities=29% Similarity=0.717 Sum_probs=21.1
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc-eee
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA-KLR 39 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG-~LR 39 (327)
+|.+||+.|..-.. +.+ .....|| .||+ .++
T Consensus 7 ~C~~Cg~~fe~~~~---~~~-~~~~~CP--~Cg~~~~~ 38 (42)
T PF09723_consen 7 RCEECGHEFEVLQS---ISE-DDPVPCP--ECGSTEVR 38 (42)
T ss_pred EeCCCCCEEEEEEE---cCC-CCCCcCC--CCCCCceE
Confidence 59999998864432 223 3567899 8998 544
No 106
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=68.56 E-value=6.9 Score=42.45 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=37.7
Q ss_pred hhhCCEEEEEccCcccc----------cCCcchhhhhcCCCeEEEEcCCCCCCCCCc-cEEE
Q 020360 61 CKIADVVLCLGTSLQIT----------PACNLPLKCLRGGGKIVIVNLQKTPKDKKA-SLVI 111 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~----------PAa~Lp~~a~~~G~~lVIINlqpT~~D~~a-dl~I 111 (327)
+.+||++|+.|+...+. |.......++++|+++|+|++..|..-..+ |++|
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l 226 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWI 226 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEe
Confidence 57899999999986543 222333456788999999999999876654 6665
No 107
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=68.55 E-value=3.6 Score=37.30 Aligned_cols=30 Identities=33% Similarity=0.770 Sum_probs=24.5
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeec
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRD 40 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRP 40 (327)
.|+.|+..|..+..++ ..-.|| .||+.|..
T Consensus 119 ~Cp~C~~rytf~eA~~------~~F~Cp--~Cg~~L~~ 148 (178)
T PRK06266 119 FCPNCHIRFTFDEAME------YGFRCP--QCGEMLEE 148 (178)
T ss_pred ECCCCCcEEeHHHHhh------cCCcCC--CCCCCCee
Confidence 4999999999887653 246899 89999876
No 108
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.15 E-value=5.7 Score=42.80 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=38.9
Q ss_pred HHhhhCCEEEEEccCccc-ccCC-cchhhhhcC-CCeEEEEcCCCCCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQI-TPAC-NLPLKCLRG-GGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV-~PAa-~Lp~~a~~~-G~~lVIINlqpT~~D~~adl~I~ 112 (327)
..+++||++|++|+.... .|.. .....|++. |+++|+|++..|.....||+++.
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ 221 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVP 221 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeC
Confidence 346789999999987643 3421 112345555 99999999999988788888763
No 109
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.00 E-value=8.3 Score=40.75 Aligned_cols=48 Identities=8% Similarity=0.116 Sum_probs=35.0
Q ss_pred hhhCCEEEEEccCcccc-c----------CCcchhhhhcCCCeEEEEcCCCCCCCCCcc
Q 020360 61 CKIADVVLCLGTSLQIT-P----------ACNLPLKCLRGGGKIVIVNLQKTPKDKKAS 108 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~-P----------Aa~Lp~~a~~~G~~lVIINlqpT~~D~~ad 108 (327)
+.+||++|+.|+-.... | .......++++|+++|+|++..|..-..+|
T Consensus 168 ~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~ad 226 (609)
T cd02769 168 AEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELG 226 (609)
T ss_pred HhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhc
Confidence 57999999999875432 1 112233567789999999999998766664
No 110
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=67.83 E-value=5.1 Score=26.83 Aligned_cols=33 Identities=27% Similarity=0.619 Sum_probs=22.1
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceee
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 39 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LR 39 (327)
.|+.|+..|..+... +.......+|+ .|+..+.
T Consensus 4 ~CP~C~~~~~v~~~~--~~~~~~~v~C~--~C~~~~~ 36 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQ--LGANGGKVRCG--KCGHVWY 36 (38)
T ss_pred ECCCCCCEEEeCHHH--cCCCCCEEECC--CCCCEEE
Confidence 599999999766432 22222346899 8997653
No 111
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=67.32 E-value=3.7 Score=40.24 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=43.0
Q ss_pred HHHhhhCCEEEEEccCcccccC---CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEc--cHHHHH-HHHHHHh
Q 020360 58 EKHCKIADVVLCLGTSLQITPA---CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG--FVDKVV-AGVMDLL 126 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~PA---a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g--~~devL-~~L~k~L 126 (327)
...+.+||++|++|+....... ..+...+++.|+++|.|++..+.....+|.+|.= ..|-.| ..+++.|
T Consensus 106 ~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD~al~~a~~~~i 180 (432)
T PF00384_consen 106 LEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTDAALALAMAHVI 180 (432)
T ss_dssp HHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTHHHHHHHHHHHH
T ss_pred cceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccccccccHHhhcccccce
Confidence 3477899999999987644432 1223346678999999999999876778876643 344444 4444443
No 112
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=66.97 E-value=11 Score=36.97 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=35.6
Q ss_pred hhCCEEEEEccCcccc-cCCc--chhh-------hhcCCCeEEEEcCCCCCCCCCccEEEEc
Q 020360 62 KIADVVLCLGTSLQIT-PACN--LPLK-------CLRGGGKIVIVNLQKTPKDKKASLVIHG 113 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~-PAa~--Lp~~-------a~~~G~~lVIINlqpT~~D~~adl~I~g 113 (327)
.+||++|++|+-.... |... +... +.+.|++++.|++..|.....+|.+|+=
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~i 191 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQI 191 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEec
Confidence 4799999999876543 2111 0011 1146889999999999887888887743
No 113
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=66.71 E-value=16 Score=38.50 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=36.6
Q ss_pred hCCEEEEEccCcccc-cCC---------cchhhhhcCCCeEEEEcCCCCCCCC-CccEEEE
Q 020360 63 IADVVLCLGTSLQIT-PAC---------NLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIH 112 (327)
Q Consensus 63 ~ADLvLVLGTSLqV~-PAa---------~Lp~~a~~~G~~lVIINlqpT~~D~-~adl~I~ 112 (327)
+||++|+.|+..... |.. .....++++|+++|+|++..|.... .+|++|.
T Consensus 169 ~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l~ 229 (609)
T cd02751 169 HSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIP 229 (609)
T ss_pred cCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEEC
Confidence 599999999875433 221 2233467889999999999988765 6898763
No 114
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=64.91 E-value=14 Score=40.37 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=29.8
Q ss_pred HHhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCCC
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTP 102 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT~ 102 (327)
..+.+||++|++|+..... |. ......++++|+++|+||+-.+.
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 4567899999999874322 11 11123467889999999996643
No 115
>PRK09939 putative oxidoreductase; Provisional
Probab=64.81 E-value=7.8 Score=42.57 Aligned_cols=43 Identities=19% Similarity=0.406 Sum_probs=29.3
Q ss_pred HHhhhCCEEEEEccCcccc-cCC-cchhhhhcCCCeEEEEcCCCC
Q 020360 59 KHCKIADVVLCLGTSLQIT-PAC-NLPLKCLRGGGKIVIVNLQKT 101 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PAa-~Lp~~a~~~G~~lVIINlqpT 101 (327)
..+.+||++|++|+..... |.. .....++++|++||+||+-.+
T Consensus 204 ~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 204 EDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred HHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 3467999999999875331 211 111245678999999999764
No 116
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=64.53 E-value=5.3 Score=34.80 Aligned_cols=34 Identities=26% Similarity=0.639 Sum_probs=23.8
Q ss_pred cCCCCCCeecchhhhhhhcCCCCC-CCCCCCCCCceeec
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETS-RRCSDLKCGAKLRD 40 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~-P~C~~~~CgG~LRP 40 (327)
.|+.|++.|.......... .++ -.|| .||+.|..
T Consensus 101 ~Cp~C~~~y~~~ea~~~~d--~~~~f~Cp--~Cg~~l~~ 135 (147)
T smart00531 101 KCPNCQSKYTFLEANQLLD--MDGTFTCP--RCGEELEE 135 (147)
T ss_pred ECcCCCCEeeHHHHHHhcC--CCCcEECC--CCCCEEEE
Confidence 4999999998765543222 122 6899 89998764
No 117
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=64.23 E-value=4.4 Score=28.50 Aligned_cols=26 Identities=38% Similarity=0.696 Sum_probs=19.0
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
+|..||.++..+... ..-+|| .||+.
T Consensus 5 ~C~~CG~~~~~~~~~-------~~~~Cp--~CG~~ 30 (46)
T PRK00398 5 KCARCGREVELDEYG-------TGVRCP--YCGYR 30 (46)
T ss_pred ECCCCCCEEEECCCC-------CceECC--CCCCe
Confidence 699999988766432 146899 89964
No 118
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=62.60 E-value=7.1 Score=32.28 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=44.1
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEccHH
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 116 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~~d 116 (327)
.+.+-|++|++-.|....-.......++++|++++.| |....++...+|+.+.-.++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 4556799999988887777777777788899987755 55666777788988877666
No 119
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=62.51 E-value=14 Score=38.08 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=43.0
Q ss_pred HhhhCCEEEEEccCcccc---cCC--cchhhhhcCC-----CeEEEEcCCCCCCCCCccEEEEcc---HHHHHHHHHHHh
Q 020360 60 HCKIADVVLCLGTSLQIT---PAC--NLPLKCLRGG-----GKIVIVNLQKTPKDKKASLVIHGF---VDKVVAGVMDLL 126 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~---PAa--~Lp~~a~~~G-----~~lVIINlqpT~~D~~adl~I~g~---~devL~~L~k~L 126 (327)
.+.+||++|++|+..... |.. .....+++.| .++|.|++..|.....+|++|.=. =..++..|++.|
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~irPGtD~al~lam~~~i 272 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIRPSQEKAFALGLAHKL 272 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccCcccHHHHHHHHHHHH
Confidence 467999999999987554 211 1112334444 499999999999888899877432 233444444444
No 120
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=62.03 E-value=11 Score=41.28 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=38.1
Q ss_pred HHhhhCCEEEEEccCcccc-cC----Ccchhhhh-cCCCeEEEEcCCCCCCC---CCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA----CNLPLKCL-RGGGKIVIVNLQKTPKD---KKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA----a~Lp~~a~-~~G~~lVIINlqpT~~D---~~adl~I~ 112 (327)
..+.+||++|++|+..... |. ......++ +.|+++|+|++..|... ..+|++|.
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlp 269 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVP 269 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEEC
Confidence 3457899999999987543 21 12222344 37899999999998866 78888763
No 121
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=61.80 E-value=20 Score=29.58 Aligned_cols=67 Identities=16% Similarity=0.030 Sum_probs=40.9
Q ss_pred hhCCEEEEEccCcccccCCcchhhhhcCC--CeEEEEcCCCC------CCCCCccEEEEccHHHHHHHHHHHhcc
Q 020360 62 KIADVVLCLGTSLQITPACNLPLKCLRGG--GKIVIVNLQKT------PKDKKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G--~~lVIINlqpT------~~D~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
.+.|++.+-..+.+...+..+....++.+ .++++=...+| .....+|+++.|..+..+++|++.|.-
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~ 112 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEELEE 112 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHHHc
Confidence 46777766555544444444444333332 44444333322 224568999999999999999999853
No 122
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=61.54 E-value=4.8 Score=41.91 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=52.8
Q ss_pred ccEEecCCCCChh---hHHHHHHHhhhCCEEEEEccCcccccCCcc-hh--------hhhcCCCeEEEEcCCCCC-----
Q 020360 40 DTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACNL-PL--------KCLRGGGKIVIVNLQKTP----- 102 (327)
Q Consensus 40 PdVV~FGE~LPe~---~l~~A~~~~~~ADLvLVLGTSLqV~PAa~L-p~--------~a~~~G~~lVIINlqpT~----- 102 (327)
=||++=+-.+|.+ +++..-...+++|++||+|..=.|-|++.- |. .-..+-..+++++..-.+
T Consensus 356 MNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv 435 (463)
T PF02233_consen 356 MNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGV 435 (463)
T ss_dssp HHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-
T ss_pred ceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCC
Confidence 3666666677765 456666688999999999999999888766 21 111112356666655322
Q ss_pred ----CCCCccEEEEccHHHHHHHHHHHh
Q 020360 103 ----KDKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 103 ----~D~~adl~I~g~~devL~~L~k~L 126 (327)
+.+....-+.||+.+.+.+|.++|
T Consensus 436 ~NpLF~~~nt~MlfGDAk~~~~~l~~~~ 463 (463)
T PF02233_consen 436 DNPLFYKDNTRMLFGDAKKTLEELVAEL 463 (463)
T ss_dssp S-GGGGSTTEEEEES-HHHHHHHHHHHH
T ss_pred CCcceecCCcEEEeccHHHHHHHHHHhC
Confidence 123345678999999999998765
No 123
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=61.06 E-value=9.1 Score=42.02 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=35.7
Q ss_pred HHhhhCCEEEEEccCccc-ccCCcc-hhhh-hcCCCeEEEEcCCCCC-CCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQI-TPACNL-PLKC-LRGGGKIVIVNLQKTP-KDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV-~PAa~L-p~~a-~~~G~~lVIINlqpT~-~D~~adl~I~ 112 (327)
..+++||++|++|+.... .|.... ...+ +++|+++|.||+..|. ....+|.++.
T Consensus 372 ~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~ 429 (797)
T PRK07860 372 ADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLR 429 (797)
T ss_pred HHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceec
Confidence 456789999999997655 342111 1123 4679999999998876 3455666553
No 124
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=60.20 E-value=10 Score=40.00 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=37.8
Q ss_pred HHhhhCCEEEEEccCcccc-cCCcc-hhhhhcCC-CeEEEEcCCCCCCCCCccEEEEcc
Q 020360 59 KHCKIADVVLCLGTSLQIT-PACNL-PLKCLRGG-GKIVIVNLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PAa~L-p~~a~~~G-~~lVIINlqpT~~D~~adl~I~g~ 114 (327)
..+.+||++|++|+..... |.... ...+.+.| +++|.||+..+.....+|+++.-.
T Consensus 358 ~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i~ 416 (603)
T TIGR01973 358 ADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFH 416 (603)
T ss_pred HHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceeec
Confidence 3567899999999876433 21111 12244444 899999999998888888766433
No 125
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=60.09 E-value=5 Score=29.53 Aligned_cols=26 Identities=38% Similarity=0.837 Sum_probs=18.4
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
.|..||+++..+.. ..+-+|+ .||..
T Consensus 8 ~C~~Cg~~~~~~~~-------~~~irCp--~Cg~r 33 (49)
T COG1996 8 KCARCGREVELDQE-------TRGIRCP--YCGSR 33 (49)
T ss_pred EhhhcCCeeehhhc-------cCceeCC--CCCcE
Confidence 59999999943321 2467999 89974
No 126
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=59.85 E-value=13 Score=36.65 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=30.6
Q ss_pred HHHhhhCCEEEEEccCccc-ccCC-cchhhhhcCCCeEEEEcCCCCC
Q 020360 58 EKHCKIADVVLCLGTSLQI-TPAC-NLPLKCLRGGGKIVIVNLQKTP 102 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV-~PAa-~Lp~~a~~~G~~lVIINlqpT~ 102 (327)
...+.+||++|++|+.... .|.. .....++++|++++.|++..+.
T Consensus 147 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 147 IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 3456789999999998632 2211 1123456789999999987664
No 127
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=59.60 E-value=8.1 Score=26.23 Aligned_cols=32 Identities=44% Similarity=0.798 Sum_probs=22.1
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCcee
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 38 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~L 38 (327)
.|+.|+..|..+... +..+...-+|+ .|+...
T Consensus 4 ~Cp~C~~~y~i~d~~--ip~~g~~v~C~--~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEK--IPPKGRKVRCS--KCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHH--CCCCCcEEECC--CCCCEe
Confidence 599999999877542 33333446898 798653
No 128
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=58.73 E-value=17 Score=37.31 Aligned_cols=87 Identities=26% Similarity=0.329 Sum_probs=56.5
Q ss_pred eccEEecCCCCChh---hHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCC--------CeEEEEcCCC--CCC--
Q 020360 39 RDTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGG--------GKIVIVNLQK--TPK-- 103 (327)
Q Consensus 39 RPdVV~FGE~LPe~---~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G--------~~lVIINlqp--T~~-- 103 (327)
+=+|++=+-.+|.+ +++...+...++|++||+|..=.|-|++.-- ...=.| ++.+++++.. +.+
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D-~SPI~GMPiLeV~KAk~viv~KRsM~sGyAG 434 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDD-NSPIAGMPVLEVWKAKTVIVFKRSMNSGYAG 434 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccC-CCCcCCCceeeeeccceEEEEeccccccccc
Confidence 34677666667865 4556666778999999999999998887543 222223 3444554432 111
Q ss_pred -C-----CCccEEEEccHHHHHHHHHHHh
Q 020360 104 -D-----KKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 104 -D-----~~adl~I~g~~devL~~L~k~L 126 (327)
| +..+.-+.||+.+...++.+.|
T Consensus 435 v~N~LFy~d~T~MlFGDAKk~V~~i~k~l 463 (463)
T COG1282 435 VQNPLFYKDNTMMLFGDAKKSVDEILKAL 463 (463)
T ss_pred cCCcceeccCcEEEeccHHHHHHHHHhcC
Confidence 1 1234668999999999988764
No 129
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=58.61 E-value=6.2 Score=28.11 Aligned_cols=28 Identities=21% Similarity=0.641 Sum_probs=18.8
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 36 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG 36 (327)
+|.+||++|...... .+ .....|| .||+
T Consensus 7 ~C~~Cg~~fe~~~~~---~~-~~~~~CP--~Cg~ 34 (52)
T TIGR02605 7 RCTACGHRFEVLQKM---SD-DPLATCP--ECGG 34 (52)
T ss_pred EeCCCCCEeEEEEec---CC-CCCCCCC--CCCC
Confidence 699999988754322 22 2346799 7996
No 130
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.51 E-value=33 Score=35.46 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=48.3
Q ss_pred hhCCEEEEEccCcccccCCcchhhhhcC--CCeEEEEcCCCCCC-------CCCccEEEEccHHHHHHHHHHHhc
Q 020360 62 KIADVVLCLGTSLQITPACNLPLKCLRG--GGKIVIVNLQKTPK-------DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~PAa~Lp~~a~~~--G~~lVIINlqpT~~-------D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.++|++.+-.++.+...+..+...+++. ++++|+=...+|.. ...+|.++.|..++++.+|++.|.
T Consensus 62 ~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 62 HCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 3689888876666666666665555433 77787776666653 135799999999999999999874
No 131
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=58.03 E-value=6 Score=40.05 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=19.7
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeecc
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDT 41 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPd 41 (327)
+|..||++|. +.. ...|+ .|+|.|...
T Consensus 4 ~C~~Cg~~~~-~~~---------~~~C~--~c~g~l~~~ 30 (398)
T TIGR03844 4 RCPGCGEVLP-DHY---------TLSCP--LDCGLLRAE 30 (398)
T ss_pred EeCCCCCccC-Ccc---------ccCCC--CCCCceEEe
Confidence 6999999996 321 36898 688876644
No 132
>PRK07586 hypothetical protein; Validated
Probab=57.80 E-value=37 Score=34.79 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=33.4
Q ss_pred HHHHHHhhhCCEEEEEccCcccccCCcchh---hhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 55 NPAEKHCKIADVVLCLGTSLQITPACNLPL---KCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 55 ~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~---~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
..+.+.+++|||+|++|+.+... ....+. ........++.++. ..+++..+|..|.+.|.
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~d~~~~l~~L~~~l~ 316 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKAPVA-FFAYPGKPSRLVPEGCEVHTLAG------------PGEDAAAALEALADALG 316 (514)
T ss_pred HHHHHHHhcCCEEEEECCCCccc-ccccCCCccccCCCCceEEEECC------------CcccHHHHHHHHHHhhc
Confidence 44556788999999999985211 100000 00011122222211 13789999999988775
No 133
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=57.41 E-value=14 Score=40.31 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=38.2
Q ss_pred HHhhhCCEEEEEccCcccc-cCC----cchhhhh-cCCCeEEEEcCCCCCCC-CCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PAC----NLPLKCL-RGGGKIVIVNLQKTPKD-KKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PAa----~Lp~~a~-~~G~~lVIINlqpT~~D-~~adl~I~ 112 (327)
..+.+||++|++|+...+. |.. .....++ +.|+++|.|++..|... ..+|.+|.
T Consensus 227 ~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~ 287 (814)
T PRK14990 227 SDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIP 287 (814)
T ss_pred HHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEEC
Confidence 4557899999999986554 321 1222344 57899999999988875 47887763
No 134
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=57.34 E-value=25 Score=33.36 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=46.5
Q ss_pred eEEEEeeccCCC--CcccceeEEEEecCCccccccccccCCCeEEEEeeecccceeEEEEEeecCCCCCCcceee
Q 020360 156 WTLRITSVHGQT--AQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQIN 228 (327)
Q Consensus 156 w~l~~~~v~~~~--~p~~~ik~v~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~ 228 (327)
|.+-..-+++.+ .+..|++.|....-+...=.--.+.++||.+. |+.- +.|.|.|+.-|-++.|+-.+.-.
T Consensus 35 th~w~v~v~~~g~E~~~~iv~KVifkLH~Tf~NP~Rti~~pPFeI~-EtGW-GEF~i~I~iff~~~age~~~~fy 107 (225)
T COG5033 35 THIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFEIK-ETGW-GEFDIQIKIFFAEKAGEKTIHFY 107 (225)
T ss_pred hEEEEEEEeCCCCcchhhhhheeeEEeccccCCCcccccCCCcEEE-eccc-ccceEEEEEEEecCCCceEeehh
Confidence 444333344332 47899999988643322112235678999998 3433 89999999999999988665443
No 135
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=56.65 E-value=19 Score=35.21 Aligned_cols=51 Identities=27% Similarity=0.300 Sum_probs=33.0
Q ss_pred HHhhhCCEEEEEccCcccc-cCCcch-hhh-hcCCCeEEEEcCCCCCCCCCccE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PACNLP-LKC-LRGGGKIVIVNLQKTPKDKKASL 109 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PAa~Lp-~~a-~~~G~~lVIINlqpT~~D~~adl 109 (327)
..+.+||++|++|+-+... |....- ..+ ++.|++++.|++..+.....+++
T Consensus 141 ~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~ 194 (375)
T cd02773 141 AGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHL 194 (375)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhccC
Confidence 4568899999999987433 422221 123 34588999999887664444443
No 136
>PRK06450 threonine synthase; Validated
Probab=54.97 E-value=5.5 Score=39.29 Aligned_cols=27 Identities=33% Similarity=0.643 Sum_probs=19.0
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeecc
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDT 41 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPd 41 (327)
+|..||++|..+ ...+|+ .|+|.|...
T Consensus 5 ~C~~Cg~~~~~~----------~~~~C~--~cg~~l~~~ 31 (338)
T PRK06450 5 VCMKCGKERESI----------YEIRCK--KCGGPFEIL 31 (338)
T ss_pred EECCcCCcCCCc----------ccccCC--cCCCEeEEe
Confidence 699999998432 136898 798865543
No 137
>PRK12474 hypothetical protein; Provisional
Probab=54.83 E-value=42 Score=34.59 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=34.8
Q ss_pred HHHHHHhhhCCEEEEEccCcccccCCcchh---hhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 55 NPAEKHCKIADVVLCLGTSLQITPACNLPL---KCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 55 ~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~---~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
..+.+.+++|||+|+||+.+... ...... .......+++.++. ..+++..++..|.+.|.
T Consensus 258 ~~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~------------~~~d~~~~l~~L~~~l~ 320 (518)
T PRK12474 258 EQITAFLKDVEQLVLVGAKPPVS-FFAYPGKPSWGAPPGCEIVYLAQ------------PDEDLAQALQDLADAVD 320 (518)
T ss_pred HHHHHHHhhCCEEEEECCCCCcc-ccccCCCccccCCCCCEEEEECC------------CCcCHHHHHHHHHHhcc
Confidence 34556788999999999986311 000000 00112334544432 12789999999988774
No 138
>PRK13937 phosphoheptose isomerase; Provisional
Probab=54.82 E-value=14 Score=33.19 Aligned_cols=56 Identities=13% Similarity=-0.042 Sum_probs=44.0
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEccH
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 115 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~~ 115 (327)
.+..-|++|++-.|....-.......++++|+++|.| +...+++...+|+.|.-..
T Consensus 103 ~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~ 159 (188)
T PRK13937 103 LGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPS 159 (188)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 4567799999998888777777777888999998876 6667777788888776443
No 139
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=54.42 E-value=15 Score=39.90 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=37.4
Q ss_pred HHhhhCCEEEEEccCcccc-cC----Ccchhhh-hcCCCeEEEEcCCCCCCC-CCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA----CNLPLKC-LRGGGKIVIVNLQKTPKD-KKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA----a~Lp~~a-~~~G~~lVIINlqpT~~D-~~adl~I~ 112 (327)
..+.+||++|+.|+..... |. ......+ +++|+++|.|++..|..- ..+|++|.
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~ 270 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIP 270 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEEC
Confidence 4567899999999987554 21 1111223 367999999999988754 47887763
No 140
>PRK04940 hypothetical protein; Provisional
Probab=54.34 E-value=11 Score=34.48 Aligned_cols=63 Identities=21% Similarity=0.118 Sum_probs=40.7
Q ss_pred eccEEec--CCCCChhhHHHHHHHhhh----C--CEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC
Q 020360 39 RDTVLDW--EDALPPKEMNPAEKHCKI----A--DVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD 104 (327)
Q Consensus 39 RPdVV~F--GE~LPe~~l~~A~~~~~~----A--DLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D 104 (327)
.|++.+. ....|.+.++...+.+.+ . +=+++|||||-=+=|..| +.+.|.+-|+||+.-.+..
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~L---a~~~g~~aVLiNPAv~P~~ 96 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERI---GFLCGIRQVIFNPNLFPEE 96 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHH---HHHHCCCEEEECCCCChHH
Confidence 6777654 222344555555555542 1 347789999965555444 4568899999999988753
No 141
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=54.08 E-value=16 Score=40.09 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=36.1
Q ss_pred HHhhhCCEEEEEccCcccc-cC--Ccchhhhh--cCCCeEEEEcCCCCCCCCCccEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA--CNLPLKCL--RGGGKIVIVNLQKTPKDKKASLVI 111 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA--a~Lp~~a~--~~G~~lVIINlqpT~~D~~adl~I 111 (327)
..+.+||++|++|+..... |. ..+. .++ ++|+++|+|++..|.....+|++|
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~-~a~~~~~G~kiiviDPr~t~ta~~ad~~l 258 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVT-DRRLSNPDVKVAVLSTFEHRSFELADNGI 258 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHH-HHHhcCCCCeEEEECCCCCchhHhcCeee
Confidence 3557999999999986442 21 1111 122 479999999998888767777765
No 142
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=53.81 E-value=10 Score=33.13 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=42.4
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEcc
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~ 114 (327)
.+.+-|++|++.-|............|+++|++++.| +....+..+.+|+.+.-.
T Consensus 69 ~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 69 SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 4567799999998888777777778888999998876 556677777777766543
No 143
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=53.40 E-value=12 Score=25.44 Aligned_cols=31 Identities=26% Similarity=0.666 Sum_probs=21.6
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
.|++|+..|..+.. .+..+...-+|+ .|+..
T Consensus 4 ~CP~C~~~f~v~~~--~l~~~~~~vrC~--~C~~~ 34 (37)
T PF13719_consen 4 TCPNCQTRFRVPDD--KLPAGGRKVRCP--KCGHV 34 (37)
T ss_pred ECCCCCceEEcCHH--HcccCCcEEECC--CCCcE
Confidence 59999999987653 233333456899 79865
No 144
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=53.39 E-value=17 Score=31.90 Aligned_cols=55 Identities=16% Similarity=0.027 Sum_probs=43.7
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEcc
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~ 114 (327)
.+..-|++|++-.|..-.-.......++..|+++|.| |....++.+.+|+.|.-.
T Consensus 98 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 98 LGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 4567899999988887777777777888999999866 666777888888877643
No 145
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=51.81 E-value=14 Score=29.88 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=42.2
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEccH
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 115 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~~ 115 (327)
.+..-|++|++-.|..-.........++.+|+++|.| |...+++.+.+|+.|.-.+
T Consensus 43 ~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 4677899999988887777777777788899988855 5556666677887776444
No 146
>PRK13938 phosphoheptose isomerase; Provisional
Probab=51.07 E-value=21 Score=32.67 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
..+..-|++|++-.|..-.-.......|+++|+++|.| +....++.+.+|+.|.-
T Consensus 109 ~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v 164 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINV 164 (196)
T ss_pred hcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEe
Confidence 34566799999988887666666777788999998866 44556666778877653
No 147
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=50.75 E-value=12 Score=40.53 Aligned_cols=51 Identities=22% Similarity=0.377 Sum_probs=37.5
Q ss_pred hhhCCEEEEEccCccc-ccCCc----chhhhhcCCCeEEEEcCCCCCCCCCccEEE
Q 020360 61 CKIADVVLCLGTSLQI-TPACN----LPLKCLRGGGKIVIVNLQKTPKDKKASLVI 111 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV-~PAa~----Lp~~a~~~G~~lVIINlqpT~~D~~adl~I 111 (327)
+++||++|++|+.... .|... ....+.+.|+++|.|++..|.....+|.+|
T Consensus 197 ~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l 252 (765)
T COG0243 197 IENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWL 252 (765)
T ss_pred HhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCcc
Confidence 8899999999998766 55443 222235677899999999988666666543
No 148
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=50.73 E-value=13 Score=32.59 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=43.1
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEccHH
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 116 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~~d 116 (327)
.+..-|++|++.-|..-.-.......|++.|++++.| +...+++...+|+.|.-..+
T Consensus 72 ~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~ 129 (179)
T cd05005 72 AIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAA 129 (179)
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCc
Confidence 4567799999998888777777777888999998866 45566777778877765443
No 149
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=49.87 E-value=21 Score=28.71 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=41.5
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEccHH
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 116 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~~d 116 (327)
.+..-|++|++-.|..-.....+...++.+|++++.| +...++....+|+.|.-+..
T Consensus 57 ~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~ 114 (139)
T cd05013 57 NLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSSE 114 (139)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCC
Confidence 4566799999988887666666677788889988866 44556666778887765443
No 150
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=49.84 E-value=19 Score=41.85 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=44.7
Q ss_pred hhhCCEEEEEccCcccc--cCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE--ccHHHHHHH
Q 020360 61 CKIADVVLCLGTSLQIT--PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH--GFVDKVVAG 121 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~--PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~--g~~devL~~ 121 (327)
..+|+++|+.|+..... |.+.....++.+|+++|.|++.-+.....+|.+|. -..|-+|..
T Consensus 243 ~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIrPGTD~ALaL 307 (1235)
T TIGR01580 243 WYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAALAL 307 (1235)
T ss_pred hhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCCCChHHHHHH
Confidence 45899999999986443 34445556788999999999999888788897763 334544443
No 151
>PRK06260 threonine synthase; Validated
Probab=49.67 E-value=8.7 Score=38.48 Aligned_cols=27 Identities=37% Similarity=0.720 Sum_probs=19.8
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeec
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRD 40 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRP 40 (327)
+|..||++|..+.. ...|| .|+|.|..
T Consensus 5 ~C~~cg~~~~~~~~---------~~~Cp--~cg~~l~~ 31 (397)
T PRK06260 5 KCIECGKEYDPDEI---------IYTCP--ECGGLLEV 31 (397)
T ss_pred EECCCCCCCCCCCc---------cccCC--CCCCeEEE
Confidence 69999999975532 36798 79886543
No 152
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=49.64 E-value=33 Score=29.68 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=40.4
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEE
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIH 112 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~ 112 (327)
+.+-|++|++-.|..-.-.......++++|++++.| +....++.+.+|+.|.
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~ 129 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR 129 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 467799999998888777777777788999998866 4455666677887765
No 153
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=48.71 E-value=23 Score=34.70 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=34.7
Q ss_pred hhCCEEEEEccCcccc-cC--Ccc-------hhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 62 KIADVVLCLGTSLQIT-PA--CNL-------PLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~-PA--a~L-------p~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
.+||++|++|+-.... |. ..+ ...+.++|++++.|++..+.....+|.+|.
T Consensus 136 ~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 136 NRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred hcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 3699999999875433 21 111 011115688999999999987778887764
No 154
>PRK07591 threonine synthase; Validated
Probab=48.54 E-value=9.5 Score=38.70 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=20.2
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeecc
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDT 41 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPd 41 (327)
+|..||++|..+. . ..|+ .|||.|...
T Consensus 20 ~C~~Cg~~~~~~~---------~-~~C~--~cg~~l~~~ 46 (421)
T PRK07591 20 KCRECGAEYPLGP---------I-HVCE--ECFGPLEVA 46 (421)
T ss_pred EeCCCCCcCCCCC---------C-ccCC--CCCCeEEEE
Confidence 6999999997552 2 5798 799877533
No 155
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=48.19 E-value=16 Score=31.86 Aligned_cols=71 Identities=17% Similarity=0.080 Sum_probs=42.9
Q ss_pred HHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC-----CCCCccEE---EEccHHHHHHHHHHHh
Q 020360 55 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP-----KDKKASLV---IHGFVDKVVAGVMDLL 126 (327)
Q Consensus 55 ~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~-----~D~~adl~---I~g~~devL~~L~k~L 126 (327)
..+.+.+..||++|+-||||.---...+...++ .+..++++=+...- ++...++. +--+.+.++..|.+--
T Consensus 54 ~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~Gg 132 (147)
T PF04016_consen 54 EDAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISEGG 132 (147)
T ss_dssp GGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCTTS
T ss_pred HHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHcCC
Confidence 457788999999999999997666666655554 46677777444222 23333331 2336777776665433
No 156
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=48.17 E-value=13 Score=26.53 Aligned_cols=25 Identities=32% Similarity=0.731 Sum_probs=18.3
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
.|..||.++..+. ...-+|+ .||..
T Consensus 4 ~C~~Cg~~~~~~~--------~~~irC~--~CG~r 28 (44)
T smart00659 4 ICGECGRENEIKS--------KDVVRCR--ECGYR 28 (44)
T ss_pred ECCCCCCEeecCC--------CCceECC--CCCce
Confidence 5999999987551 1346899 79964
No 157
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=48.17 E-value=22 Score=36.47 Aligned_cols=83 Identities=23% Similarity=0.250 Sum_probs=56.3
Q ss_pred ceeeccEEecCCCCChh--hHHHHH----HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCC---
Q 020360 36 AKLRDTVLDWEDALPPK--EMNPAE----KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKK--- 106 (327)
Q Consensus 36 G~LRPdVV~FGE~LPe~--~l~~A~----~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~--- 106 (327)
|-+|+| .+||+- +...|+ ++++.||++|++.|.|.-.-.+++.. ...+++.|..+|..-++.
T Consensus 311 GSIRDD-----GPLPdvitDv~~AQ~amR~~~~~a~~vimlaTmLHSIAtGNm~P----s~v~~~cVDInp~~VtKL~DR 381 (407)
T TIGR00300 311 GSIRDD-----GPLPDVITDVVRAQSKMRELLQGADMVLMLSTMLHSIAVGNLLP----SGVKTICVDINPAVVTKLSDR 381 (407)
T ss_pred eeccCC-----CCCCcchhhHHHHHHHHHHHhccCCeehhHHHHHHHHhhccccc----ccceEEEEECCHHHhhhhhcc
Confidence 556664 456652 222343 46678999999999998888777743 234677776666443332
Q ss_pred ---ccEEEEccHHHHHHHHHHHhc
Q 020360 107 ---ASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 107 ---adl~I~g~~devL~~L~k~Lg 127 (327)
...-|-.++...++.|.+.|.
T Consensus 382 Gs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 382 GSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred CceeEEEEEecHHHHHHHHHHHHh
Confidence 235678899999999999885
No 158
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=48.16 E-value=26 Score=31.69 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=41.0
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
.+..-|++|++-.|+.-.-.......++++|+++|.| +....++.+.+|+.|.-
T Consensus 108 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~ 162 (192)
T PRK00414 108 VGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRV 162 (192)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 3466799999998888777777777788999998866 45556666777877753
No 159
>PRK15482 transcriptional regulator MurR; Provisional
Probab=47.90 E-value=20 Score=33.80 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=45.2
Q ss_pred HHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEc-CCCCCCCCCccEEEEccH
Q 020360 58 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKKASLVIHGFV 115 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIIN-lqpT~~D~~adl~I~g~~ 115 (327)
...+..-|++|++.-|............|+.+|+++|.|- ...+++...+|+.|.-..
T Consensus 177 ~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~ 235 (285)
T PRK15482 177 SQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVS 235 (285)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCC
Confidence 3456677999999999988888888888899999999774 455667778888876444
No 160
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=47.42 E-value=1.2e+02 Score=28.67 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=49.6
Q ss_pred ccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC---CCCCccEEEEccHH
Q 020360 40 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVIHGFVD 116 (327)
Q Consensus 40 PdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~---~D~~adl~I~g~~d 116 (327)
++|.|.| .+|.. .....++.||++|.. |. ..+...-+..|...|.|+|..+..... .+....+.+.++.+
T Consensus 280 ~~V~f~g-~~~~~---~~~~~l~~ad~~l~~--s~-~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~ 352 (392)
T cd03805 280 DQVIFLP-SISDS---QKELLLSSARALLYT--PS-NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPE 352 (392)
T ss_pred ceEEEeC-CCChH---HHHHHHhhCeEEEEC--CC-cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHH
Confidence 4555554 34442 234567889998863 32 244444456788899999988765432 23345566777777
Q ss_pred HHHHHHHHHhc
Q 020360 117 KVVAGVMDLLN 127 (327)
Q Consensus 117 evL~~L~k~Lg 127 (327)
++...|.+.+.
T Consensus 353 ~~a~~i~~l~~ 363 (392)
T cd03805 353 EFAEAMLKLAN 363 (392)
T ss_pred HHHHHHHHHHh
Confidence 77766666554
No 161
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=47.03 E-value=28 Score=41.56 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=42.6
Q ss_pred HHhhhCCEEEEEccCcccc-cCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHH
Q 020360 59 KHCKIADVVLCLGTSLQIT-PACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMD 124 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k 124 (327)
..+.++|++|++|+.+.-. ....+.... . ..+|.|+..+...+. ..++.|.+++.+++..|++
T Consensus 594 ~~~~~aDlVl~iG~rl~s~~~t~~~~~~~-~--~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~ 659 (1655)
T PLN02980 594 RNWIQFDVVIQIGSRITSKRVSQMLEKCF-P--FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLK 659 (1655)
T ss_pred hccCCCCEEEEeCCccccHHHHHHHHhCC-C--CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhh
Confidence 3456899999999998522 111121111 1 258889988877653 4578999999999988865
No 162
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=45.55 E-value=13 Score=42.08 Aligned_cols=49 Identities=24% Similarity=0.418 Sum_probs=33.9
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCC
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIAD 65 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~AD 65 (327)
+|.+|+..|.|-- ..-+|+ +|||.|-++|- ..++ ..-|+.|.+.+++-+
T Consensus 1014 RC~kC~~kYRR~P---------L~G~C~--kCGg~lilTV~--~GsV-~KYl~~s~~la~~Y~ 1062 (1095)
T TIGR00354 1014 RCTKCNTKYRRIP---------LVGKCL--KCGNNLTLTVS--KGSV-MKYLELSKFLAENYN 1062 (1095)
T ss_pred eecccCCccccCC---------CCCccc--ccCCeEEEEEe--cchh-HhhHHHHHHHHHHcC
Confidence 7999999996652 346899 89999988875 2222 334666766666543
No 163
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=44.94 E-value=23 Score=33.20 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=44.5
Q ss_pred HHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcC-CCCCCCCCccEEEEc
Q 020360 54 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHG 113 (327)
Q Consensus 54 l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINl-qpT~~D~~adl~I~g 113 (327)
+..+...+..-|++|++.-|............|+.+|+++|.|-- ...+....+|+.|..
T Consensus 166 ~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 166 LLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEe
Confidence 334455677889999998888766666667778899999987744 456667788888864
No 164
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=44.92 E-value=11 Score=33.08 Aligned_cols=27 Identities=26% Similarity=0.735 Sum_probs=18.4
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
-+|.+||+.|..... + ...-|| .|||.
T Consensus 2 H~Ct~Cg~~f~dgs~-e------il~GCP--~CGg~ 28 (131)
T PF09845_consen 2 HQCTKCGRVFEDGSK-E------ILSGCP--ECGGN 28 (131)
T ss_pred cccCcCCCCcCCCcH-H------HHccCc--ccCCc
Confidence 379999999975431 1 235698 78863
No 165
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.55 E-value=14 Score=42.07 Aligned_cols=49 Identities=31% Similarity=0.556 Sum_probs=34.1
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCC
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIAD 65 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~AD 65 (327)
+|.+|+..|.|-- ..-+|+ +|||.|-++|- ..++ ..-|+.|...+++-+
T Consensus 1039 RC~kC~~kYRR~P---------L~G~C~--kCGg~lilTVh--~GsV-~KYl~~s~~la~~Y~ 1087 (1121)
T PRK04023 1039 RCTKCGAKYRRPP---------LSGKCP--KCGGNLILTVH--KGSV-EKYLEVSKKLAEEYG 1087 (1121)
T ss_pred eecccCcccccCC---------CCCcCc--cCCCeEEEEEe--cchH-HHHHHHHHHHHHHcC
Confidence 7999999996652 346899 89999999885 2222 334666666666533
No 166
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=44.49 E-value=37 Score=36.97 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=31.6
Q ss_pred HHHhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCCCC
Q 020360 58 EKHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPK 103 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT~~ 103 (327)
...+.+||++|++|+..... |. ......++++|+++|+|++..|..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 34567899999999975332 21 111234567899999999987754
No 167
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=44.02 E-value=24 Score=38.80 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHhhhCCEEEEEccCcccc-cC--Ccchhhhh--cCCCeEEEEcCCCCCCCCCccEEE
Q 020360 59 KHCKIADVVLCLGTSLQIT-PA--CNLPLKCL--RGGGKIVIVNLQKTPKDKKASLVI 111 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PA--a~Lp~~a~--~~G~~lVIINlqpT~~D~~adl~I 111 (327)
..+.+||++|++|+..... |. ..+ ..++ ++|+++|+|++..+.....+|++|
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i-~~a~~~~~GakliviDPr~t~ta~~Ad~~l 258 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRV-TDRRLSHPKVKVVVLSTFTHRSFDLADIGI 258 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHH-HHHHhccCCCEEEEECCCCCchhHHhCeee
Confidence 4557999999999976443 11 111 1223 469999999998888767777765
No 168
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=43.13 E-value=31 Score=32.90 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=52.8
Q ss_pred eeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 37 KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 37 ~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
.+...++...+..- +......+..-|++|++.-|....-.......|+++|+++|.| +...+++.+.+|+.+..
T Consensus 154 ~ig~~~~~~~d~~~---~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 154 RIGLNVVALSDTHG---QLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred HcCCceeEecchHH---HHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 35555555555421 1134556678899999988887776667777788999999977 45578888888888765
No 169
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=42.17 E-value=36 Score=31.71 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=42.2
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEc
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 113 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g 113 (327)
..+..-|++|++..|............|++.|+++|.|--...+....+|+.|.-
T Consensus 171 ~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 171 MNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 4456789999998888777666777778999999998865556666778877753
No 170
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=41.93 E-value=16 Score=42.52 Aligned_cols=49 Identities=29% Similarity=0.541 Sum_probs=34.2
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCC
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIAD 65 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~AD 65 (327)
+|.+|+..|.|-- ..-+|+ .|||.|-++|- ..++ +.-|+.|.+.+++-+
T Consensus 1255 RC~kC~~kyRR~P---------L~G~C~--kCGg~iilTv~--~Gsv-~KYl~~a~~~~~~y~ 1303 (1337)
T PRK14714 1255 RCLKCGTKYRRMP---------LAGKCR--KCGGRIILTVH--EGSV-EKYLDTAKMVATEYN 1303 (1337)
T ss_pred eecccCcccccCC---------CCCccc--ccCCeEEEEEe--cchH-HHHHHHHHHHHHHcC
Confidence 7999999996652 346899 89999998885 2222 334667777666543
No 171
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=41.92 E-value=17 Score=30.66 Aligned_cols=28 Identities=32% Similarity=1.011 Sum_probs=20.0
Q ss_pred cCCCCCCeec-chhhhhhhcCCCCCCCCCCCCCCceeecc
Q 020360 3 ACPSCGSEYF-RDFEVETIGLKETSRRCSDLKCGAKLRDT 41 (327)
Q Consensus 3 ~C~~Cgk~y~-~d~~~~ti~~k~t~P~C~~~~CgG~LRPd 41 (327)
.|++||+.|. ++ ...-.|| .||....|.
T Consensus 11 ~Cp~CG~kFYDLn---------k~PivCP--~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCPSCGAKFYDLN---------KDPIVCP--KCGTEFPPE 39 (108)
T ss_pred cCCCCcchhccCC---------CCCccCC--CCCCccCcc
Confidence 6999998763 33 2345699 899877776
No 172
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=41.89 E-value=13 Score=30.91 Aligned_cols=26 Identities=35% Similarity=0.763 Sum_probs=18.5
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 36 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG 36 (327)
.+|.+||.+|..+.+. ..-+|| .|.+
T Consensus 59 a~CkkCGfef~~~~ik-------~pSRCP--~CKS 84 (97)
T COG3357 59 ARCKKCGFEFRDDKIK-------KPSRCP--KCKS 84 (97)
T ss_pred hhhcccCccccccccC-------CcccCC--cchh
Confidence 3699999999776442 245898 7863
No 173
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=41.69 E-value=36 Score=32.17 Aligned_cols=58 Identities=24% Similarity=0.242 Sum_probs=42.1
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
.+...+..-|++|++--|..-.-...+...|+.+|+++|.| +...+++...+|+.|.-
T Consensus 180 ~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 180 MSAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 34456677899999988876666666677788999999876 44455666777877753
No 174
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=41.01 E-value=13 Score=23.27 Aligned_cols=23 Identities=52% Similarity=1.159 Sum_probs=15.7
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCcee
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 38 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~L 38 (327)
.|..||++...+ ...|+ .||..|
T Consensus 4 ~Cp~Cg~~~~~~-----------~~fC~--~CG~~L 26 (26)
T PF13248_consen 4 FCPNCGAEIDPD-----------AKFCP--NCGAKL 26 (26)
T ss_pred CCcccCCcCCcc-----------cccCh--hhCCCC
Confidence 699999854222 35798 788654
No 175
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.60 E-value=23 Score=23.38 Aligned_cols=24 Identities=38% Similarity=0.808 Sum_probs=17.5
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 36 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG 36 (327)
-+|..||..|..+. ....|| .||.
T Consensus 2 ~~C~~CGy~y~~~~---------~~~~CP--~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE---------APWVCP--VCGA 25 (33)
T ss_pred EECCCCCCEECCCc---------CCCcCc--CCCC
Confidence 36999999986542 245899 7974
No 176
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.21 E-value=54 Score=35.49 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=13.8
Q ss_pred HHHHHHHhhhCCEEEEEccCc
Q 020360 54 MNPAEKHCKIADVVLCLGTSL 74 (327)
Q Consensus 54 l~~A~~~~~~ADLvLVLGTSL 74 (327)
.+.+....++-+.-|+|||.+
T Consensus 469 ~~~~l~~f~~g~~~ILVgT~~ 489 (679)
T PRK05580 469 LEQLLAQFARGEADILIGTQM 489 (679)
T ss_pred HHHHHHHHhcCCCCEEEEChh
Confidence 455556666556667788986
No 177
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=39.78 E-value=15 Score=22.73 Aligned_cols=23 Identities=43% Similarity=1.097 Sum_probs=15.2
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCcee
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 38 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~L 38 (327)
+|+.||++...+ ...|+ .||..|
T Consensus 1 ~Cp~CG~~~~~~-----------~~fC~--~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDD-----------AKFCP--NCGTPL 23 (23)
T ss_pred CCcccCCCCCCc-----------Ccchh--hhCCcC
Confidence 589999876322 34688 788543
No 178
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=39.73 E-value=50 Score=30.04 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=37.6
Q ss_pred hhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEc-cHHHHHHHHHH
Q 020360 62 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG-FVDKVVAGVMD 124 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g-~~devL~~L~k 124 (327)
.++||+|.+|+.. |..+......++-.++..|.+..-. ...||+-+-. .-++.+..|-+
T Consensus 107 ~~~DlvlfvG~~~---~~~~~~l~~lk~f~~~~~~~~~~~y-~~~a~~s~~~~~~~~~~~~l~~ 166 (171)
T PRK00945 107 GNYDLVIFIGVTY---YYASQGLSALKHFSPLKTITIDRYY-HPNADMSFPNLSKEEYLEYLDE 166 (171)
T ss_pred CCcCEEEEecCCc---hhHHHHHHHHhhcCCceEEEecCCc-CCCCceecCCCCHHHHHHHHHH
Confidence 5899999999984 6666665556666666677666554 5667766522 23444444433
No 179
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=39.59 E-value=93 Score=31.74 Aligned_cols=69 Identities=13% Similarity=0.027 Sum_probs=49.6
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcC--CCeEEEEcCCCCCCC-------CCccEEEEccHHHHHHHHHH
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRG--GGKIVIVNLQKTPKD-------KKASLVIHGFVDKVVAGVMD 124 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~--G~~lVIINlqpT~~D-------~~adl~I~g~~devL~~L~k 124 (327)
...+...++|++.+-.++.+...+..+....++. ++++|+--..+|... ..+|.++.|..+..+.+|++
T Consensus 61 ~~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~ 138 (472)
T TIGR03471 61 DTLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAE 138 (472)
T ss_pred HHHHHhcCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHc
Confidence 3444566799998888888777777776655543 677777766655431 34789999999999988864
No 180
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.92 E-value=23 Score=23.76 Aligned_cols=24 Identities=33% Similarity=0.743 Sum_probs=17.0
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 36 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG 36 (327)
-+|..||..|..+. ....|| .||.
T Consensus 3 ~~C~~CG~i~~g~~---------~p~~CP--~Cg~ 26 (34)
T cd00729 3 WVCPVCGYIHEGEE---------APEKCP--ICGA 26 (34)
T ss_pred EECCCCCCEeECCc---------CCCcCc--CCCC
Confidence 36999999885432 235899 7984
No 181
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=38.58 E-value=1.6e+02 Score=29.25 Aligned_cols=85 Identities=19% Similarity=0.119 Sum_probs=48.9
Q ss_pred ccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC---CCCCccEEEEccHH
Q 020360 40 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVIHGFVD 116 (327)
Q Consensus 40 PdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~---~D~~adl~I~g~~d 116 (327)
.++++|+..+|.+ ...+.+..||+++++-.+-.-.....-...|...|.|+|..|....+ .+...-+.+ ++.+
T Consensus 294 ~~~~~~~g~~~~~---~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv-~d~~ 369 (415)
T cd03816 294 KKVTIRTPWLSAE---DYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVF-GDSE 369 (415)
T ss_pred CcEEEEcCcCCHH---HHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEE-CCHH
Confidence 4788887777653 34567889999875422211011111123566789999987754322 133334444 6777
Q ss_pred HHHHHHHHHhcc
Q 020360 117 KVVAGVMDLLNL 128 (327)
Q Consensus 117 evL~~L~k~Lg~ 128 (327)
++-..|...|.-
T Consensus 370 ~la~~i~~ll~~ 381 (415)
T cd03816 370 ELAEQLIDLLSN 381 (415)
T ss_pred HHHHHHHHHHhc
Confidence 776666666654
No 182
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=38.46 E-value=19 Score=32.75 Aligned_cols=50 Identities=24% Similarity=0.207 Sum_probs=33.6
Q ss_pred hhhHHHHHHHhhh--CCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC
Q 020360 51 PKEMNPAEKHCKI--ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK 103 (327)
Q Consensus 51 e~~l~~A~~~~~~--ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~ 103 (327)
...++...+.+++ .+-+++|||||-=+-|..| |.+.|.+-|+||+--.+.
T Consensus 43 ~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~L---a~~~~~~avLiNPav~p~ 94 (187)
T PF05728_consen 43 EEAIAQLEQLIEELKPENVVLIGSSLGGFYATYL---AERYGLPAVLINPAVRPY 94 (187)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHH---HHHhCCCEEEEcCCCCHH
Confidence 3345555555554 2348999999976655544 456788899999876663
No 183
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=38.39 E-value=27 Score=21.79 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=13.5
Q ss_pred CCcCCCCCCeecchhhhh
Q 020360 1 MEACPSCGSEYFRDFEVE 18 (327)
Q Consensus 1 ~e~C~~Cgk~y~~d~~~~ 18 (327)
+..|..||+.|..+....
T Consensus 2 l~~C~~CgR~F~~~~l~~ 19 (25)
T PF13913_consen 2 LVPCPICGRKFNPDRLEK 19 (25)
T ss_pred CCcCCCCCCEECHHHHHH
Confidence 467999999997665443
No 184
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=38.27 E-value=1.9e+02 Score=26.24 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=49.6
Q ss_pred eeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC--CCCCccEEE-Ecc
Q 020360 38 LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP--KDKKASLVI-HGF 114 (327)
Q Consensus 38 LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~--~D~~adl~I-~g~ 114 (327)
+.++|.+.|..+|.+ .....++.||+++.-.. ..-.+.......|...|.|+|.-+..... .+....+.+ .++
T Consensus 245 ~~~~v~~~~~~~~~~---~~~~~~~~ad~~v~ps~-~e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d 320 (366)
T cd03822 245 LADRVIFINRYLPDE---ELPELFSAADVVVLPYR-SADQTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTGLLVPPGD 320 (366)
T ss_pred CCCcEEEecCcCCHH---HHHHHHhhcCEEEeccc-ccccccchHHHHHHHcCCCEEecCCCChheeeeCCCcEEEcCCC
Confidence 457788888767754 34567788999875322 21113333344677889999887765421 122233434 355
Q ss_pred HHHHHHHHHHHhc
Q 020360 115 VDKVVAGVMDLLN 127 (327)
Q Consensus 115 ~devL~~L~k~Lg 127 (327)
.+++...|.+.+.
T Consensus 321 ~~~~~~~l~~l~~ 333 (366)
T cd03822 321 PAALAEAIRRLLA 333 (366)
T ss_pred HHHHHHHHHHHHc
Confidence 7766666655554
No 185
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=37.22 E-value=20 Score=39.48 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=26.9
Q ss_pred HHhhhCCEEEEEccCccc-ccCCcc-hhhhhcCCCeEEEEcCC
Q 020360 59 KHCKIADVVLCLGTSLQI-TPACNL-PLKCLRGGGKIVIVNLQ 99 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV-~PAa~L-p~~a~~~G~~lVIINlq 99 (327)
..+.+||++|++|+.+.. .|.... ...|.++|+++++|++.
T Consensus 367 ~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred HHHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 345789999999998754 333222 23456778877766664
No 186
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=37.16 E-value=44 Score=30.83 Aligned_cols=55 Identities=22% Similarity=0.120 Sum_probs=42.7
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
..+.+-|++|++--|....-.......|+.+|+++|.| |...+++...+|+.|.-
T Consensus 43 ~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~ 98 (268)
T TIGR00393 43 GMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDI 98 (268)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEc
Confidence 34567799999998888887778888889999888754 66667777778877654
No 187
>PHA02768 hypothetical protein; Provisional
Probab=37.15 E-value=27 Score=26.26 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=21.4
Q ss_pred cCCCCCCeecchhhh-hhhcCCCCCCCCCCCCCCc
Q 020360 3 ACPSCGSEYFRDFEV-ETIGLKETSRRCSDLKCGA 36 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~-~ti~~k~t~P~C~~~~CgG 36 (327)
.|..||+.|.+...+ .+...|..+-+|. .|+-
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~--~C~k 39 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRKHNTNLKLS--NCKR 39 (55)
T ss_pred CcchhCCeeccHHHHHHHHHhcCCcccCC--cccc
Confidence 599999999865544 3333343466888 7873
No 188
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=37.02 E-value=74 Score=31.49 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=47.1
Q ss_pred HHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCC-CCC---CCCCccEEEEc---cHHHHHHHHHHHh
Q 020360 54 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ-KTP---KDKKASLVIHG---FVDKVVAGVMDLL 126 (327)
Q Consensus 54 l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlq-pT~---~D~~adl~I~g---~~devL~~L~k~L 126 (327)
.+...+.+.++|++||+|+.- -.-..+|...|.+.|.+-++|+-. .-. +.....+-|-+ ..+.+...++++|
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~n-SSNs~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l 281 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKN-SSNSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKL 281 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCC-CccHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHH
Confidence 344555678899999999642 345567777888999988888643 222 23333444543 3477777777766
No 189
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=36.80 E-value=17 Score=30.76 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=17.2
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
+|..||+.|..+.. ...+|| .||+.
T Consensus 73 ~C~~Cg~~~~~~~~--------~~~~CP--~Cgs~ 97 (117)
T PRK00564 73 ECKDCSHVFKPNAL--------DYGVCE--KCHSK 97 (117)
T ss_pred EhhhCCCccccCCc--------cCCcCc--CCCCC
Confidence 69999987765421 124699 79964
No 190
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=36.63 E-value=12 Score=31.26 Aligned_cols=24 Identities=33% Similarity=0.779 Sum_probs=16.3
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
+|..||++|..+... ..|| .||+.
T Consensus 72 ~C~~Cg~~~~~~~~~---------~~CP--~Cgs~ 95 (113)
T PF01155_consen 72 RCRDCGHEFEPDEFD---------FSCP--RCGSP 95 (113)
T ss_dssp EETTTS-EEECHHCC---------HH-S--SSSSS
T ss_pred ECCCCCCEEecCCCC---------CCCc--CCcCC
Confidence 699999999776431 3599 79864
No 191
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=36.60 E-value=41 Score=33.23 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=45.4
Q ss_pred CEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 65 DVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 65 DLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT-~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.|.|.+|-|..|.-.+.+ +.-.-+|-||.+|. |.-.-+|+-|.||.=+++|+|.+.|+
T Consensus 276 eLYiAvGisGAIQHLAGm-----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 276 ELYIAVGISGAIQHLAGM-----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ceEEEEeccHHHHHhhcC-----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 578888888887766665 22335778999875 45577899999999999999999885
No 192
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=36.39 E-value=65 Score=36.01 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=39.7
Q ss_pred HHhhhCCEEEEEccCccc-ccCCcch-hhhh-cCCCeEEEEcCCCCCC-CC--CccEEE--EccHHH-HHHHHHHHh
Q 020360 59 KHCKIADVVLCLGTSLQI-TPACNLP-LKCL-RGGGKIVIVNLQKTPK-DK--KASLVI--HGFVDK-VVAGVMDLL 126 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV-~PAa~Lp-~~a~-~~G~~lVIINlqpT~~-D~--~adl~I--~g~~de-vL~~L~k~L 126 (327)
+.+.+||++|++|+-+.- .|....- ..|. ++|+++++|++-.+.. .. .+++++ .-..|. ++..|++.+
T Consensus 366 ~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~i 442 (819)
T PRK08493 366 EDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKF 442 (819)
T ss_pred HHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHH
Confidence 456789999999996532 3322221 2343 4788999998887754 22 244555 222333 444445544
No 193
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.84 E-value=28 Score=27.99 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=49.7
Q ss_pred cEEecCCCCChhhHHHHHHHhhhCCEEEEEc-cCcccccCCcchhhhhcC--CCeEEEEcCCCCCC-----C--CCccEE
Q 020360 41 TVLDWEDALPPKEMNPAEKHCKIADVVLCLG-TSLQITPACNLPLKCLRG--GGKIVIVNLQKTPK-----D--KKASLV 110 (327)
Q Consensus 41 dVV~FGE~LPe~~l~~A~~~~~~ADLvLVLG-TSLqV~PAa~Lp~~a~~~--G~~lVIINlqpT~~-----D--~~adl~ 110 (327)
+|.+++-+.+.+.+..+... .++|++.+-. ++-+...+..+....++. +.++++=....|.. . ..+|.+
T Consensus 30 ~v~~~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~v 108 (121)
T PF02310_consen 30 EVDILDANVPPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYV 108 (121)
T ss_dssp EEEEEESSB-HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEE
T ss_pred eEEEECCCCCHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCccee
Confidence 56666666665444333222 2789876655 455555666665554433 66777777776642 1 456899
Q ss_pred EEccHHHHHHHHH
Q 020360 111 IHGFVDKVVAGVM 123 (327)
Q Consensus 111 I~g~~devL~~L~ 123 (327)
+.|..++.+.+|+
T Consensus 109 v~GegE~~~~~l~ 121 (121)
T PF02310_consen 109 VRGEGEEAFPELL 121 (121)
T ss_dssp EEETTSSHHHH--
T ss_pred cCCChHHhhcccC
Confidence 9999988887764
No 194
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.73 E-value=26 Score=30.67 Aligned_cols=28 Identities=18% Similarity=0.515 Sum_probs=19.8
Q ss_pred cCCCCCCeec-chhhhhhhcCCCCCCCCCCCCCCceeecc
Q 020360 3 ACPSCGSEYF-RDFEVETIGLKETSRRCSDLKCGAKLRDT 41 (327)
Q Consensus 3 ~C~~Cgk~y~-~d~~~~ti~~k~t~P~C~~~~CgG~LRPd 41 (327)
.|++||+.|. +. .....|| .||....|.
T Consensus 11 ~Cp~cg~kFYDLn---------k~p~vcP--~cg~~~~~~ 39 (129)
T TIGR02300 11 ICPNTGSKFYDLN---------RRPAVSP--YTGEQFPPE 39 (129)
T ss_pred cCCCcCccccccC---------CCCccCC--CcCCccCcc
Confidence 6999998763 22 2467899 899765554
No 195
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=35.49 E-value=22 Score=29.85 Aligned_cols=25 Identities=16% Similarity=0.402 Sum_probs=17.3
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
-+|..||+.|..+.. .-.|| .||+.
T Consensus 71 ~~C~~Cg~~~~~~~~---------~~~CP--~Cgs~ 95 (113)
T PRK12380 71 AWCWDCSQVVEIHQH---------DAQCP--HCHGE 95 (113)
T ss_pred EEcccCCCEEecCCc---------CccCc--CCCCC
Confidence 379999988866531 13499 79864
No 196
>PRK08329 threonine synthase; Validated
Probab=35.42 E-value=20 Score=35.35 Aligned_cols=28 Identities=39% Similarity=0.884 Sum_probs=19.3
Q ss_pred CCcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeecc
Q 020360 1 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDT 41 (327)
Q Consensus 1 ~e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPd 41 (327)
|-+|..||++|..+. ..+|+ |++.|...
T Consensus 1 ~l~C~~Cg~~~~~~~----------~~~C~---c~~~l~~~ 28 (347)
T PRK08329 1 MLRCTKCGRTYEEKF----------KLRCD---CGGTLLVE 28 (347)
T ss_pred CcCcCCCCCCcCCCC----------ceecC---CCCcEEEE
Confidence 458999999996432 25785 88765433
No 197
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=35.39 E-value=64 Score=25.80 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=41.8
Q ss_pred eccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCC--CCCCCCCccEEEEccHH
Q 020360 39 RDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ--KTPKDKKASLVIHGFVD 116 (327)
Q Consensus 39 RPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlq--pT~~D~~adl~I~g~~d 116 (327)
.++|.+.|.. + ...+.+..||+.|..-..-...|. -...+...|.+++.-+.. ...........+.++.+
T Consensus 52 ~~~v~~~g~~--~----e~~~~l~~~dv~l~p~~~~~~~~~--k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFV--E----ELPEILAAADVGLIPSRFNEGFPN--KLLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPE 123 (135)
T ss_dssp HCTEEEE-S---H----HHHHHHHC-SEEEE-BSS-SCC-H--HHHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HH
T ss_pred CCCEEEcCCH--H----HHHHHHHhCCEEEEEeeCCCcCcH--HHHHHHHhCCCEEECCcchhhheeecCCeEEECCCHH
Confidence 6788888776 2 345667889999975432221111 122456789888887762 11112334456677888
Q ss_pred HHHHHHHHHhc
Q 020360 117 KVVAGVMDLLN 127 (327)
Q Consensus 117 evL~~L~k~Lg 127 (327)
++...|.+.++
T Consensus 124 ~l~~~i~~l~~ 134 (135)
T PF13692_consen 124 ELAEAIERLLN 134 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888776653
No 198
>PLN02275 transferase, transferring glycosyl groups
Probab=34.75 E-value=1.9e+02 Score=28.09 Aligned_cols=77 Identities=18% Similarity=0.050 Sum_probs=43.2
Q ss_pred ccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCc--ccccCCcchhhhhcCCCeEEEEcCCCCC---CCCCccEEEEcc
Q 020360 40 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSL--QITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVIHGF 114 (327)
Q Consensus 40 PdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSL--qV~PAa~Lp~~a~~~G~~lVIINlqpT~---~D~~adl~I~g~ 114 (327)
.++++|+..+|.+ .....+..||++++.=+|. ...|.. ...|...|.|+|..|....+ .+...-+.+. +
T Consensus 286 ~~v~~~~~~~~~~---~~~~~l~~aDv~v~~~~s~~~e~~p~~--llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~-~ 359 (371)
T PLN02275 286 RHVAFRTMWLEAE---DYPLLLGSADLGVSLHTSSSGLDLPMK--VVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS-S 359 (371)
T ss_pred CceEEEcCCCCHH---HHHHHHHhCCEEEEeccccccccccHH--HHHHHHCCCCEEEecCCChHHHccCCCCeEEEC-C
Confidence 4578888777653 3457788999998632221 111222 23567789999988765433 1333344443 5
Q ss_pred HHHHHHHH
Q 020360 115 VDKVVAGV 122 (327)
Q Consensus 115 ~devL~~L 122 (327)
.++....|
T Consensus 360 ~~~la~~i 367 (371)
T PLN02275 360 SSELADQL 367 (371)
T ss_pred HHHHHHHH
Confidence 54443333
No 199
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=34.61 E-value=65 Score=29.55 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=38.8
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCC---ccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKK---ASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~---adl~I~ 112 (327)
.....-|++|++-+|..-.........|+..|+++|.| +....+..+. +|+.|.
T Consensus 105 ~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ 162 (196)
T PRK10886 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR 162 (196)
T ss_pred HcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEE
Confidence 34567799999988888777777777788999998866 4455555443 566554
No 200
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.06 E-value=24 Score=29.65 Aligned_cols=25 Identities=28% Similarity=0.670 Sum_probs=17.6
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
-+|..|++.|..... .-.|| .||+.
T Consensus 71 ~~C~~Cg~~~~~~~~---------~~~CP--~Cgs~ 95 (115)
T TIGR00100 71 CECEDCSEEVSPEID---------LYRCP--KCHGI 95 (115)
T ss_pred EEcccCCCEEecCCc---------CccCc--CCcCC
Confidence 369999998866532 23699 79864
No 201
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=33.94 E-value=35 Score=37.51 Aligned_cols=51 Identities=4% Similarity=-0.042 Sum_probs=33.2
Q ss_pred hhhCCEEEEEccCccc----------ccCCcchhhhh---cC-CCeEEEEcCCCCCCCCC-ccEEE
Q 020360 61 CKIADVVLCLGTSLQI----------TPACNLPLKCL---RG-GGKIVIVNLQKTPKDKK-ASLVI 111 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV----------~PAa~Lp~~a~---~~-G~~lVIINlqpT~~D~~-adl~I 111 (327)
+.+||++|+.|+...+ .|...+...++ +. |+++|+|++..|..-.. +|.+|
T Consensus 208 ~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~l 273 (822)
T TIGR02164 208 LENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEHL 273 (822)
T ss_pred HHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeEe
Confidence 5789999999998743 23222222222 23 48999999998886553 46544
No 202
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=33.90 E-value=1.7e+02 Score=29.08 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=42.6
Q ss_pred HHHHHHHhhhCCEEEEEc-cCcc--cccCCcchhh--h--hcCCCeEEEEcCC--CCCCCCCccEEEEccHHHHHHHHHH
Q 020360 54 MNPAEKHCKIADVVLCLG-TSLQ--ITPACNLPLK--C--LRGGGKIVIVNLQ--KTPKDKKASLVIHGFVDKVVAGVMD 124 (327)
Q Consensus 54 l~~A~~~~~~ADLvLVLG-TSLq--V~PAa~Lp~~--a--~~~G~~lVIINlq--pT~~D~~adl~I~g~~devL~~L~k 124 (327)
...+.+++++|| +||+| .|+- |.|.-.++.. | .....++++.|.- +...+ .=.+.+-+..|.+
T Consensus 163 ~~~al~AI~~AD-lIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~tq~gEt~-------g~~~~dhv~~i~~ 234 (310)
T TIGR01826 163 LREAVEAIREAD-LIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGETD-------GFSLEDHVDALHR 234 (310)
T ss_pred CHHHHHHHHhCC-EEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCCCCCCCCCC-------CCCHHHHHHHHHH
Confidence 467889999999 45666 4442 3454444432 2 2344567778873 32222 1146777788889
Q ss_pred HhcccCCCc
Q 020360 125 LLNLRIPPY 133 (327)
Q Consensus 125 ~Lg~~IP~~ 133 (327)
++|..+..|
T Consensus 235 ~~g~~~~D~ 243 (310)
T TIGR01826 235 HLGKPFIDT 243 (310)
T ss_pred HcCCCCCCE
Confidence 987654333
No 203
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=33.85 E-value=17 Score=24.84 Aligned_cols=28 Identities=21% Similarity=0.737 Sum_probs=14.7
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCC
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCG 35 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~Cg 35 (327)
..|..|+++|.-.+.+++. ..+.|. .|+
T Consensus 4 ~~C~eC~~~f~dSyL~~~F----~~~VCD--~CR 31 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNF----DLPVCD--KCR 31 (34)
T ss_dssp EE-TTT--EES-SSCCCCT----S-S--T--TT-
T ss_pred chHhHhCCHHHHHHHHHhC----Cccccc--ccc
Confidence 3699999999888776654 357888 675
No 204
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=33.79 E-value=36 Score=34.74 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=33.8
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCC-ChhhHHHHHHHhhhCCEEEEEccCcc
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDAL-PPKEMNPAEKHCKIADVVLCLGTSLQ 75 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~L-Pe~~l~~A~~~~~~ADLvLVLGTSLq 75 (327)
+|..|++.+... .+...+|| .||+.++=.=-+|..+| ++++++...+.++.. .+||--+
T Consensus 242 ~c~~cg~~~~~~--------~~~~~~c~--~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~----~l~~~~~ 301 (380)
T COG1867 242 HCSRCGEIVGSF--------REVDEKCP--HCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGL----ELGTKKR 301 (380)
T ss_pred Ecccccceeccc--------ccccccCC--cccccceeccCcccCcccCHHHHHHHHHHhhcc----ccccHHH
Confidence 699998443222 12347899 89986655444455554 555555555555443 5565433
No 205
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=33.28 E-value=95 Score=31.85 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=53.0
Q ss_pred EEecCCCCChhhHHHHHHHh-hhCCEEEEEccCccc----ccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHH
Q 020360 42 VLDWEDALPPKEMNPAEKHC-KIADVVLCLGTSLQI----TPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVD 116 (327)
Q Consensus 42 VV~FGE~LPe~~l~~A~~~~-~~ADLvLVLGTSLqV----~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~d 116 (327)
.++|-+.|+++.+....+.. ...+...-|||.|.. .|+-+++ -+++.+|-.|.-+=+...-..-++-.
T Consensus 309 ~Iv~S~~Lde~~i~~L~~~~~~~i~~~fGIGT~Lt~~~~~~p~l~~V-------~KLv~~~g~P~~KlSd~~~K~t~p~~ 381 (400)
T PRK05321 309 TLVFSDGLDFDKALELYRHFKGRIKLSFGIGTNLTNDFPGVKPLNIV-------IKLVECNGRPVAKLSDSPGKTMCDDP 381 (400)
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCcceEecCcceecCCCCCCCcceE-------EEEEEECCeeeEEecCCCcccCCCCH
Confidence 47899999987655554543 445778999999964 3444443 26788887665432222233455666
Q ss_pred HHHHHHHHHhcccC
Q 020360 117 KVVAGVMDLLNLRI 130 (327)
Q Consensus 117 evL~~L~k~Lg~~I 130 (327)
+++..+.+.+|++.
T Consensus 382 ~~~~~~~~~~~~~~ 395 (400)
T PRK05321 382 EFLRYLRQVFGLPL 395 (400)
T ss_pred HHHHHHHHHcCCCc
Confidence 77888888888763
No 206
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=33.25 E-value=18 Score=30.68 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=10.7
Q ss_pred CcCCCCCCeecch
Q 020360 2 EACPSCGSEYFRD 14 (327)
Q Consensus 2 e~C~~Cgk~y~~d 14 (327)
-+|.+||+.|...
T Consensus 3 H~CtrCG~vf~~g 15 (112)
T COG3364 3 HQCTRCGEVFDDG 15 (112)
T ss_pred ceecccccccccc
Confidence 3699999999764
No 207
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=32.65 E-value=44 Score=32.08 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=43.2
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEcc
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~ 114 (327)
..+.+-|++|++-.|+...-.......|+..|+++|.| +...+++.+.+|+.|.-.
T Consensus 90 ~~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~ 146 (326)
T PRK10892 90 GMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVK 146 (326)
T ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeC
Confidence 34566799999999888888888888888899988865 455567778888877543
No 208
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=32.20 E-value=46 Score=30.00 Aligned_cols=51 Identities=25% Similarity=0.319 Sum_probs=22.5
Q ss_pred CChhhHHHHHHHhh--hCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC
Q 020360 49 LPPKEMNPAEKHCK--IADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK 103 (327)
Q Consensus 49 LPe~~l~~A~~~~~--~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~ 103 (327)
+|-|....+...++ +.|++|+++|=+ .| +|...+++.|+++++||-.-+..
T Consensus 79 ~P~D~~~~~~rfl~~~~P~~~i~~EtEl--WP--nll~~a~~~~ip~~LvNarls~~ 131 (186)
T PF04413_consen 79 LPLDFPWAVRRFLDHWRPDLLIWVETEL--WP--NLLREAKRRGIPVVLVNARLSER 131 (186)
T ss_dssp ---SSHHHHHHHHHHH--SEEEEES------H--HHHHH-----S-EEEEEE-----
T ss_pred eCccCHHHHHHHHHHhCCCEEEEEcccc--CH--HHHHHHhhcCCCEEEEeeeeccc
Confidence 56554444444444 469999999954 77 46667788999999999776654
No 209
>PLN02569 threonine synthase
Probab=32.00 E-value=23 Score=36.98 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=18.9
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceee
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 39 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LR 39 (327)
.|..||++|..+.. ..+|+ |||.|-
T Consensus 51 ~C~~Cg~~y~~~~~---------~~~C~---cgg~l~ 75 (484)
T PLN02569 51 ECPLTGEKYSLDEV---------VYRSK---SGGLLD 75 (484)
T ss_pred EeCCCCCcCCCccc---------cccCC---CCCeEE
Confidence 69999999976643 36885 988763
No 210
>PRK13936 phosphoheptose isomerase; Provisional
Probab=31.74 E-value=78 Score=28.62 Aligned_cols=56 Identities=13% Similarity=0.002 Sum_probs=39.8
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEc-CCCCCCCC---CccEEEEccH
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDK---KASLVIHGFV 115 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIIN-lqpT~~D~---~adl~I~g~~ 115 (327)
..+.-|++|++..|..-.-...+...+++.|+++|.|- ...++..+ .+|+.|.-+.
T Consensus 108 ~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~ 167 (197)
T PRK13936 108 LGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPA 167 (197)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCC
Confidence 34577999999999876666666777889999999763 34444444 3777765444
No 211
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=31.70 E-value=1.1e+02 Score=32.04 Aligned_cols=77 Identities=9% Similarity=0.139 Sum_probs=54.4
Q ss_pred cEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC--CCCccEEEEccHHHH
Q 020360 41 TVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKV 118 (327)
Q Consensus 41 dVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~--D~~adl~I~g~~dev 118 (327)
+.|.|.....+..+ .+....|.|+|-++++-... ....|..+|.|.| |..|+.+ +...-+.| |+.++.
T Consensus 409 ~~v~f~gy~~e~dl---~~~~~~arl~id~s~~eg~~----~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li-~d~~~l 478 (519)
T TIGR03713 409 ERIAFTTLTNEEDL---ISALDKLRLIIDLSKEPDLY----TQISGISAGIPQI--NKVETDYVEHNKNGYII-DDISEL 478 (519)
T ss_pred cEEEEEecCCHHHH---HHHHhhheEEEECCCCCChH----HHHHHHHcCCCee--ecCCceeeEcCCCcEEe-CCHHHH
Confidence 67888887776433 36778889998887754322 3345778998888 9888875 44445545 899998
Q ss_pred HHHHHHHhc
Q 020360 119 VAGVMDLLN 127 (327)
Q Consensus 119 L~~L~k~Lg 127 (327)
-..|...|.
T Consensus 479 ~~al~~~L~ 487 (519)
T TIGR03713 479 LKALDYYLD 487 (519)
T ss_pred HHHHHHHHh
Confidence 888877764
No 212
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=31.38 E-value=29 Score=40.76 Aligned_cols=48 Identities=35% Similarity=0.538 Sum_probs=33.4
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCC
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIAD 65 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~AD 65 (327)
+| +|+..|.|-- ..-+|+ +|||.|-.+|- ..+ -+.-|..|.+.+++-+
T Consensus 1544 RC-kC~~kyRR~P---------L~G~C~--kCGg~~ilTV~--kGs-v~KYl~~a~~~~~~y~ 1591 (1627)
T PRK14715 1544 RC-KCGAKYRRVP---------LKGKCP--KCGSKLILTVS--KGA-VEKYMPVAKMMAEKYN 1591 (1627)
T ss_pred ee-cCCCccccCC---------CCCcCc--ccCCeEEEEEe--cch-HHHHHHHHHHHHHHcC
Confidence 79 9999996652 346899 89999988875 222 2345677777776644
No 213
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=31.21 E-value=28 Score=29.28 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=17.1
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
-+|..||+.|..... ..-.|| .||+.
T Consensus 71 ~~C~~Cg~~~~~~~~--------~~~~CP--~Cgs~ 96 (114)
T PRK03681 71 CWCETCQQYVTLLTQ--------RVRRCP--QCHGD 96 (114)
T ss_pred EEcccCCCeeecCCc--------cCCcCc--CcCCC
Confidence 369999988765421 113599 79864
No 214
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.07 E-value=1.1e+02 Score=32.04 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=13.8
Q ss_pred HHHHHHHhhhCCEEEEEccCc
Q 020360 54 MNPAEKHCKIADVVLCLGTSL 74 (327)
Q Consensus 54 l~~A~~~~~~ADLvLVLGTSL 74 (327)
++.+.+...+-+.-|+|||.+
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~ 321 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQM 321 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcc
Confidence 345556666656667788886
No 215
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=30.98 E-value=20 Score=28.82 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=42.9
Q ss_pred HHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEc-CCCCCCCCCccEEEEccH
Q 020360 58 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKKASLVIHGFV 115 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIIN-lqpT~~D~~adl~I~g~~ 115 (327)
...+..-|++|++..|..-.........+++.|+++|.|- ....+....+|+.|.-..
T Consensus 48 ~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~ 106 (131)
T PF01380_consen 48 LENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPT 106 (131)
T ss_dssp GGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEES
T ss_pred cccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecC
Confidence 3455667999999988888888888788889999998774 445556667777665443
No 216
>PRK02947 hypothetical protein; Provisional
Probab=30.62 E-value=65 Score=30.27 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=39.9
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCC------------CCCCCCccEEEE
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK------------TPKDKKASLVIH 112 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqp------------T~~D~~adl~I~ 112 (327)
..+..-|++|++-.|..-.....+...+++.|+++|.|--.+ .++...+|++|.
T Consensus 102 ~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 102 YDIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred cCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 345677999999888877777777778889999999874443 344556676663
No 217
>PRK08197 threonine synthase; Validated
Probab=30.13 E-value=23 Score=35.48 Aligned_cols=24 Identities=38% Similarity=0.884 Sum_probs=17.1
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCcee
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 38 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~L 38 (327)
+|..||++|..+.. ...|+ ||+.|
T Consensus 9 ~C~~Cg~~~~~~~~---------~~~C~---cg~~l 32 (394)
T PRK08197 9 ECSKCGETYDADQV---------HNLCK---CGKPL 32 (394)
T ss_pred EECCCCCCCCCCCc---------ceecC---CCCee
Confidence 69999999975532 25784 88764
No 218
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=29.29 E-value=2.7e+02 Score=24.58 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=44.6
Q ss_pred ccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC---CCCccEEEEcc-H
Q 020360 40 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK---DKKASLVIHGF-V 115 (327)
Q Consensus 40 PdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~---D~~adl~I~g~-~ 115 (327)
++|.+. ..++. +...+.+..||++|....+ .....-...|...|.++|.-+.....- +....+.+... .
T Consensus 256 ~~v~~~-g~~~~---~~~~~~~~~~di~i~~~~~---~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~ 328 (374)
T cd03801 256 DRVTFL-GFVPD---EDLPALYAAADVFVLPSLY---EGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDP 328 (374)
T ss_pred cceEEE-eccCh---hhHHHHHHhcCEEEecchh---ccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCH
Confidence 344443 34443 2355677789998876554 333333446778899988877643321 12333444433 5
Q ss_pred HHHHHHHHHHh
Q 020360 116 DKVVAGVMDLL 126 (327)
Q Consensus 116 devL~~L~k~L 126 (327)
+++...|.+.+
T Consensus 329 ~~l~~~i~~~~ 339 (374)
T cd03801 329 EALAEAILRLL 339 (374)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 219
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=29.20 E-value=1.4e+02 Score=30.54 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=49.2
Q ss_pred EEecCCCCChhhHHHHHHHhh-hCCEEEEEccCccc----ccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHH
Q 020360 42 VLDWEDALPPKEMNPAEKHCK-IADVVLCLGTSLQI----TPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVD 116 (327)
Q Consensus 42 VV~FGE~LPe~~l~~A~~~~~-~ADLvLVLGTSLqV----~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~d 116 (327)
++.|-+.|+++......+..+ ..-...-|||.|.. .|+.+++. +++.+|-+|.-+-+...-..-++-.
T Consensus 309 ~iv~Sd~Lde~~i~~L~~~~~g~~~d~FGVGT~l~~d~~~~~~l~~V~-------Klv~~~g~P~~KlSd~~~K~t~~d~ 381 (394)
T TIGR01514 309 IIIFSDSLDVEKAIELSHYFKGRVKASFGIGTNLTNDFGKVEPLNIVI-------KLVECNGNPVAKLSDSPGKTMGEPA 381 (394)
T ss_pred EEEEcCCCCHHHHHHHHHHhcCCCceeEecCcceecCCCCCCCcceEE-------EEEEECCccceEecCCCcccCCCCH
Confidence 366999999865544444433 23457889999976 45555532 6888887765542222233454455
Q ss_pred HHHHHHHHHhcc
Q 020360 117 KVVAGVMDLLNL 128 (327)
Q Consensus 117 evL~~L~k~Lg~ 128 (327)
+.+..+.+.+++
T Consensus 382 ~~~~~~~~~~~~ 393 (394)
T TIGR01514 382 TFLRALRELFDT 393 (394)
T ss_pred HHHHHHHHHhCC
Confidence 666777776664
No 220
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=29.01 E-value=2.3e+02 Score=26.75 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=37.4
Q ss_pred cEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCC
Q 020360 41 TVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK 100 (327)
Q Consensus 41 dVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqp 100 (327)
.|++|+..++.+. ....+..||++|.- |. ..+...-...|...|.|+|.-|...
T Consensus 261 ~v~~~~~~~~~~~---~~~~~~~aDv~v~p--s~-~e~~g~~~lEA~a~G~PvI~s~~~~ 314 (388)
T TIGR02149 261 GIIWINKMLPKEE---LVELLSNAEVFVCP--SI-YEPLGIVNLEAMACGTPVVASATGG 314 (388)
T ss_pred ceEEecCCCCHHH---HHHHHHhCCEEEeC--Cc-cCCCChHHHHHHHcCCCEEEeCCCC
Confidence 4888888887643 45677889998773 33 2444444467888999999877654
No 221
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=28.28 E-value=70 Score=36.53 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=35.6
Q ss_pred HhhhCCEEEEEccCcccc--cCCc---chhhhhcCC-CeEEEEcCCCCCCC----CCccEEE
Q 020360 60 HCKIADVVLCLGTSLQIT--PACN---LPLKCLRGG-GKIVIVNLQKTPKD----KKASLVI 111 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~--PAa~---Lp~~a~~~G-~~lVIINlqpT~~D----~~adl~I 111 (327)
.+.+||++|++||+.... |... ....++.+| .++|+|++-.|... ..+|.+|
T Consensus 282 D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wl 343 (1031)
T PRK14991 282 DWDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPALPLSSSLAAGDNNRWL 343 (1031)
T ss_pred hhhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCCCCchhhhhhcCCEEe
Confidence 457899999999986553 3221 123455565 79999999987743 4567665
No 222
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=28.10 E-value=33 Score=25.55 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=18.3
Q ss_pred CCCCCCeecchhhhhhhcCCCCCCCCCCCCCC
Q 020360 4 CPSCGSEYFRDFEVETIGLKETSRRCSDLKCG 35 (327)
Q Consensus 4 C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~Cg 35 (327)
...|++.|.++.+.+.+.. .....||...|+
T Consensus 27 s~~C~H~fek~aI~~~i~~-~~~~~CPv~GC~ 57 (57)
T PF11789_consen 27 SKKCGHTFEKEAILQYIQR-NGSKRCPVAGCN 57 (57)
T ss_dssp ESSS--EEEHHHHHHHCTT-TS-EE-SCCC-S
T ss_pred cCCCCCeecHHHHHHHHHh-cCCCCCCCCCCC
Confidence 4579999999988777732 345689866674
No 223
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=27.53 E-value=94 Score=33.80 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=29.1
Q ss_pred HHHhhhCCEEEEEccCcccc-cCCcc-hhhhhcCCC-eEEEEcCCCCC
Q 020360 58 EKHCKIADVVLCLGTSLQIT-PACNL-PLKCLRGGG-KIVIVNLQKTP 102 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~-PAa~L-p~~a~~~G~-~lVIINlqpT~ 102 (327)
...+++||++|++|+..... |.... ...+.++|+ ++++|++..+.
T Consensus 359 i~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 359 IAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 34568999999999987432 21111 123445564 99999987554
No 224
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=27.44 E-value=58 Score=31.05 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=41.2
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
.+..-|++|++-.|............|+++|+++|.| +...+++.+.+|+.+.-
T Consensus 86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 3456799999988888777777777888999998866 44556777778877743
No 225
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=27.33 E-value=3.5e+02 Score=23.38 Aligned_cols=48 Identities=19% Similarity=0.081 Sum_probs=30.2
Q ss_pred ChhhHHHHHHHhh-hCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC
Q 020360 50 PPKEMNPAEKHCK-IADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT 101 (327)
Q Consensus 50 Pe~~l~~A~~~~~-~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT 101 (327)
++...+.+...+. .+|.+|+.+++..... ...+...|.++|.++....
T Consensus 41 ~~~~~~~~~~~~~~~~d~iii~~~~~~~~~----~~~~~~~~ipvv~~~~~~~ 89 (264)
T cd06267 41 PEKEREALELLLSRRVDGIILAPSRLDDEL----LEELAALGIPVVLVDRPLD 89 (264)
T ss_pred HHHHHHHHHHHHHcCcCEEEEecCCcchHH----HHHHHHcCCCEEEeccccc
Confidence 3334444444443 7899999887653322 3345678899999987643
No 226
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=27.02 E-value=41 Score=22.51 Aligned_cols=25 Identities=32% Similarity=0.755 Sum_probs=15.9
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
.|..||.+..... ...-+|+ .||..
T Consensus 2 ~C~~Cg~~~~~~~--------~~~irC~--~CG~R 26 (32)
T PF03604_consen 2 ICGECGAEVELKP--------GDPIRCP--ECGHR 26 (32)
T ss_dssp BESSSSSSE-BST--------SSTSSBS--SSS-S
T ss_pred CCCcCCCeeEcCC--------CCcEECC--cCCCe
Confidence 5899999876432 1245899 79864
No 227
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=26.80 E-value=92 Score=29.74 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.5
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV 96 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII 96 (327)
.++.-|+++|+-+|..-.-...+...++..|++++.+
T Consensus 101 ~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~v 137 (243)
T COG4821 101 QIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAV 137 (243)
T ss_pred cCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEE
Confidence 4456799999999997555556666788999999987
No 228
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.99 E-value=40 Score=29.21 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=10.2
Q ss_pred cCCCCCCeecch
Q 020360 3 ACPSCGSEYFRD 14 (327)
Q Consensus 3 ~C~~Cgk~y~~d 14 (327)
+|..||+.|..+
T Consensus 72 ~C~~CG~~~~~~ 83 (135)
T PRK03824 72 KCRNCGNEWSLK 83 (135)
T ss_pred ECCCCCCEEecc
Confidence 699999988765
No 229
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=25.89 E-value=3e+02 Score=25.31 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=45.4
Q ss_pred eccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC---CCCCccEEE-Ecc
Q 020360 39 RDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVI-HGF 114 (327)
Q Consensus 39 RPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~---~D~~adl~I-~g~ 114 (327)
.++|.++|- .+ ...+.+..||++|.- |..-.....-...|...|.|+|.-|..... .+....+.+ .++
T Consensus 245 ~~~v~~~g~--~~----~~~~~l~~ad~~i~p--s~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~ 316 (355)
T cd03819 245 QDRVTFVGH--CS----DMPAAYALADIVVSA--STEPEAFGRTAVEAQAMGRPVIASDHGGARETVRPGETGLLVPPGD 316 (355)
T ss_pred cceEEEcCC--cc----cHHHHHHhCCEEEec--CCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCC
Confidence 456666665 12 244677789998764 322233333345677899999988765443 122223333 456
Q ss_pred HHHHHHHHHHHh
Q 020360 115 VDKVVAGVMDLL 126 (327)
Q Consensus 115 ~devL~~L~k~L 126 (327)
.+++...|...+
T Consensus 317 ~~~l~~~i~~~~ 328 (355)
T cd03819 317 AEALAQALDQIL 328 (355)
T ss_pred HHHHHHHHHHHH
Confidence 776666664444
No 230
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=25.45 E-value=2.8e+02 Score=24.02 Aligned_cols=76 Identities=14% Similarity=0.041 Sum_probs=41.9
Q ss_pred HHHHHHhhhCCEEEEE-ccCccccc-------CCc-------chhhhhcCCCeEEEEcCCCCCC-CCCc-cEEEEccHHH
Q 020360 55 NPAEKHCKIADVVLCL-GTSLQITP-------ACN-------LPLKCLRGGGKIVIVNLQKTPK-DKKA-SLVIHGFVDK 117 (327)
Q Consensus 55 ~~A~~~~~~ADLvLVL-GTSLqV~P-------Aa~-------Lp~~a~~~G~~lVIINlqpT~~-D~~a-dl~I~g~~de 117 (327)
..+....+.+|++++. ||-=.... ... +...+++.|+.++++.+.+... .... -..-.....+
T Consensus 57 ~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~ 136 (198)
T cd01821 57 DAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPA 136 (198)
T ss_pred HHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHH
Confidence 3344444478987776 55432221 111 2223466789999998766431 1111 0011345678
Q ss_pred HHHHHHHHhcccC
Q 020360 118 VVAGVMDLLNLRI 130 (327)
Q Consensus 118 vL~~L~k~Lg~~I 130 (327)
++.++++..|+..
T Consensus 137 ~~~~~a~~~~~~~ 149 (198)
T cd01821 137 AMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHHhCCCE
Confidence 8899999988654
No 231
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.43 E-value=3.6e+02 Score=23.92 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=34.1
Q ss_pred cCCCCChhhHHHHHHHh-hhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCC
Q 020360 45 WEDALPPKEMNPAEKHC-KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ 99 (327)
Q Consensus 45 FGE~LPe~~l~~A~~~~-~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlq 99 (327)
..+.=++...+.+...+ +.+|.+|+..++-. ....+...+...|.|+|.+|..
T Consensus 36 ~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~--~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 36 DAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD--SLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp ESTTTHHHHHHHHHHHHHTTESEEEEESSSTT--TTHHHHHHHHHTTSEEEEESST
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH--HHHHHHHHHhhcCceEEEEecc
Confidence 34443444445555554 56899998766542 2234556677889999999988
No 232
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=25.42 E-value=4.8e+02 Score=24.39 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=48.4
Q ss_pred eeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC---CCCCccEEE-Ec
Q 020360 38 LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVI-HG 113 (327)
Q Consensus 38 LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~---~D~~adl~I-~g 113 (327)
+.++|.|.| .+|. +.....++.||++|+. |. .++..-+..|...|.|+|..+..... .+....+.+ .+
T Consensus 240 ~~~~V~~~g-~~~~---~~~~~~~~~ad~~v~p--s~--e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~ 311 (351)
T cd03804 240 AGPNVTFLG-RVSD---EELRDLYARARAFLFP--AE--EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQ 311 (351)
T ss_pred cCCCEEEec-CCCH---HHHHHHHHhCCEEEEC--Cc--CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCC
Confidence 346666555 4554 3456778899998864 33 34444455778899999988765433 123344544 35
Q ss_pred cHHHHHHHHHHHhc
Q 020360 114 FVDKVVAGVMDLLN 127 (327)
Q Consensus 114 ~~devL~~L~k~Lg 127 (327)
+.+++...|...+.
T Consensus 312 ~~~~la~~i~~l~~ 325 (351)
T cd03804 312 TVESLAAAVERFEK 325 (351)
T ss_pred CHHHHHHHHHHHHh
Confidence 56665555544443
No 233
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=24.95 E-value=1.8e+02 Score=28.45 Aligned_cols=73 Identities=10% Similarity=0.079 Sum_probs=43.8
Q ss_pred hHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCC----CCCCCCCccEEEEc---cHHHHHHHHHHH
Q 020360 53 EMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ----KTPKDKKASLVIHG---FVDKVVAGVMDL 125 (327)
Q Consensus 53 ~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlq----pT~~D~~adl~I~g---~~devL~~L~k~ 125 (327)
..+.+.+.+.++|++||+|..= -.-...|...+...|.+.+.|.-. +.-+.....+-|-+ ..+.++.++.+.
T Consensus 198 RQ~a~~~la~~vD~miVVGg~n-SsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~ 276 (280)
T TIGR00216 198 RQDAVKELAPEVDLMIVIGGKN-SSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRK 276 (280)
T ss_pred HHHHHHHHHhhCCEEEEECCCC-CchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHH
Confidence 4566777888999999999542 133445666677778778877532 11122222343433 345666666666
Q ss_pred h
Q 020360 126 L 126 (327)
Q Consensus 126 L 126 (327)
|
T Consensus 277 l 277 (280)
T TIGR00216 277 I 277 (280)
T ss_pred H
Confidence 5
No 234
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=24.77 E-value=99 Score=34.06 Aligned_cols=46 Identities=4% Similarity=-0.016 Sum_probs=30.8
Q ss_pred hhhCCEEEEEccCccc----------ccCCcchhhhh---cC-CCeEEEEcCCCCCCCCC
Q 020360 61 CKIADVVLCLGTSLQI----------TPACNLPLKCL---RG-GGKIVIVNLQKTPKDKK 106 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV----------~PAa~Lp~~a~---~~-G~~lVIINlqpT~~D~~ 106 (327)
+.+||++|+.|+.... .|...+...++ ++ |+++|+|++..|..-..
T Consensus 211 ~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~ 270 (825)
T PRK15102 211 LENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNY 270 (825)
T ss_pred HHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhh
Confidence 5789999999987643 23322222222 23 78999999998886554
No 235
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=24.37 E-value=42 Score=33.84 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=14.0
Q ss_pred HHhhhCCEEEEEccCccc
Q 020360 59 KHCKIADVVLCLGTSLQI 76 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV 76 (327)
..+.+||++|++|+-+..
T Consensus 141 ~di~~ad~il~~G~n~~~ 158 (472)
T cd02771 141 RDIESADAVLVLGEDLTQ 158 (472)
T ss_pred HHHHhCCEEEEEeCCccc
Confidence 345689999999987644
No 236
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=23.98 E-value=70 Score=30.36 Aligned_cols=52 Identities=15% Similarity=0.044 Sum_probs=39.7
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEE
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIH 112 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~ 112 (327)
+..-|++|++-.|............|++.|++++.| |...++....+|+.|.
T Consensus 116 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~ 168 (257)
T cd05007 116 LTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIA 168 (257)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEE
Confidence 356799999988888777777778889999998755 5555666666776665
No 237
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=23.92 E-value=1e+02 Score=29.92 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=38.7
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
+..-|++|++-.|............+++.|++++.| |...+++...+|+.|.-
T Consensus 129 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~ 182 (299)
T PRK05441 129 LTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEV 182 (299)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEc
Confidence 456799999988887776767777788999987754 55555666667776643
No 238
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.88 E-value=78 Score=25.21 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=27.4
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 97 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIIN 97 (327)
.....+.+||++|++=....-.-....-..|++.|.|++.++
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 456788999999997543332222222334678888998886
No 239
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.72 E-value=51 Score=20.99 Aligned_cols=21 Identities=38% Similarity=1.073 Sum_probs=14.6
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 36 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG 36 (327)
.|+.|+++.... ...|+ .||-
T Consensus 2 ~CP~C~~~V~~~-----------~~~Cp--~CG~ 22 (26)
T PF10571_consen 2 TCPECGAEVPES-----------AKFCP--HCGY 22 (26)
T ss_pred cCCCCcCCchhh-----------cCcCC--CCCC
Confidence 589998876333 35788 7874
No 240
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=23.62 E-value=24 Score=35.67 Aligned_cols=33 Identities=33% Similarity=0.690 Sum_probs=24.8
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEE
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVL 43 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV 43 (327)
-|..|...|..+.... .--+|| +|||.++-.|-
T Consensus 248 AC~rC~t~y~le~A~~------~~wrCp--kCGg~ikKGV~ 280 (403)
T COG1379 248 ACSRCYTRYSLEEAKS------LRWRCP--KCGGKIKKGVS 280 (403)
T ss_pred HHHHhhhccCcchhhh------hcccCc--ccccchhhhHH
Confidence 4999999998775431 235899 89998887764
No 241
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=23.31 E-value=4.4e+02 Score=23.43 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=35.9
Q ss_pred hhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHh
Q 020360 62 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~L 126 (327)
..+|-+|+.|+... + .....+.+.|.++|.+|...... ..+ .|..+-.+....++++|
T Consensus 54 ~~vdgii~~~~~~~--~--~~~~~~~~~~ipvV~~~~~~~~~--~~~-~v~~d~~~~~~~~~~~l 111 (268)
T cd06270 54 RRCDALILHSKALS--D--DELIELAAQVPPLVLINRHIPGL--ADR-CIWLDNEQGGYLATEHL 111 (268)
T ss_pred cCCCEEEEecCCCC--H--HHHHHHhhCCCCEEEEeccCCCC--CCC-eEEECcHHHHHHHHHHH
Confidence 57999999986432 1 11334567789999999754221 122 35556666666666666
No 242
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.12 E-value=99 Score=22.95 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=29.7
Q ss_pred HHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEc
Q 020360 58 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 97 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIIN 97 (327)
.....+-|++|++-.|..-.-...+...+++.|++++.|-
T Consensus 42 ~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 42 LSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 3556778999999777765555566667788899988773
No 243
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=23.09 E-value=93 Score=27.61 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHhhhCCEEEEE-ccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC----CCccEEEEccHHHHHHHH
Q 020360 56 PAEKHCKIADVVLCL-GTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD----KKASLVIHGFVDKVVAGV 122 (327)
Q Consensus 56 ~A~~~~~~ADLvLVL-GTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D----~~adl~I~g~~devL~~L 122 (327)
+....+++||++||. |-.-.=+-++.=..+|...|.++|++..+.-.+. ..+.+.+-...++++.-|
T Consensus 65 RT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL 136 (141)
T PF11071_consen 65 RTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEIL 136 (141)
T ss_pred HHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHH
Confidence 445688999999987 8766666666666677788999999988765532 122344556677776544
No 244
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=22.62 E-value=85 Score=31.44 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=31.5
Q ss_pred HHHHhhhCCEEEEEccCcccc-cCCcc-hhhhh-cCCCeEEEEcCCCCCCCCC
Q 020360 57 AEKHCKIADVVLCLGTSLQIT-PACNL-PLKCL-RGGGKIVIVNLQKTPKDKK 106 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~-PAa~L-p~~a~-~~G~~lVIINlqpT~~D~~ 106 (327)
....+++||++|++|+-+... |.... ...+. +.|+++++|++.. .+...
T Consensus 142 sl~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~-~~~~~ 193 (366)
T cd02774 142 SLKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF-DTTYP 193 (366)
T ss_pred CHHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc-ccCCc
Confidence 456788999999999987543 22222 11222 4578999998776 44433
No 245
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.60 E-value=2.1e+02 Score=27.98 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=43.0
Q ss_pred hHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCC----CCCCCCCccEEEEc---cHHHHHHHHHHH
Q 020360 53 EMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ----KTPKDKKASLVIHG---FVDKVVAGVMDL 125 (327)
Q Consensus 53 ~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlq----pT~~D~~adl~I~g---~~devL~~L~k~ 125 (327)
..+.+.+.++++|++||+|..= -.-...|...|.+.|.+...|.-. +.-+.....+-|-+ ..+.++.++.+.
T Consensus 199 RQ~a~~~La~~vD~miVVGg~~-SsNT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~ 277 (281)
T PRK12360 199 RQESAKELSKEVDVMIVIGGKH-SSNTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKK 277 (281)
T ss_pred HHHHHHHHHHhCCEEEEecCCC-CccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 4556677778999999999642 123345656677777677777532 22122233344433 346666666666
Q ss_pred h
Q 020360 126 L 126 (327)
Q Consensus 126 L 126 (327)
|
T Consensus 278 l 278 (281)
T PRK12360 278 I 278 (281)
T ss_pred H
Confidence 5
No 246
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=22.37 E-value=3.3e+02 Score=27.93 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=52.6
Q ss_pred hHHHHHHHhhhCCEEEEEccCc--ccccCCcch--hhhhcCCCeEEEEcCCCCCCCC------------CccE-EEEccH
Q 020360 53 EMNPAEKHCKIADVVLCLGTSL--QITPACNLP--LKCLRGGGKIVIVNLQKTPKDK------------KASL-VIHGFV 115 (327)
Q Consensus 53 ~l~~A~~~~~~ADLvLVLGTSL--qV~PAa~Lp--~~a~~~G~~lVIINlqpT~~D~------------~adl-~I~g~~ 115 (327)
.+....+++++||++|..|-|+ .+++..++. ..|+..|.|++++--.--|+.. .+++ .++
T Consensus 107 ~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvR--- 183 (426)
T PRK10017 107 GFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQDEQFNQLANYVFGHCDALILR--- 183 (426)
T ss_pred hHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEc---
Confidence 3556677899999999998776 245554443 2456778899998766666543 2333 233
Q ss_pred HHHHHHHHHHhcccCCCcc
Q 020360 116 DKVVAGVMDLLNLRIPPYI 134 (327)
Q Consensus 116 devL~~L~k~Lg~~IP~~~ 134 (327)
|+.-.++++.||...|...
T Consensus 184 D~~S~~~Lk~lGv~~~~v~ 202 (426)
T PRK10017 184 ESVSLDLMKRSNITTAKVE 202 (426)
T ss_pred cHHHHHHHHHhCCCccceE
Confidence 4555677899998876544
No 247
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=22.13 E-value=62 Score=23.51 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=22.4
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCcee
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 38 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~L 38 (327)
..|..|+-..+.+... .+........|| .||-+|
T Consensus 23 ~~C~gC~~~l~~~~~~-~i~~~~~i~~Cp--~CgRiL 56 (56)
T PF02591_consen 23 GTCSGCHMELPPQELN-EIRKGDEIVFCP--NCGRIL 56 (56)
T ss_pred CccCCCCEEcCHHHHH-HHHcCCCeEECc--CCCccC
Confidence 4699999887766543 333334568899 798654
No 248
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.97 E-value=3.6e+02 Score=23.42 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=43.5
Q ss_pred CCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEE----EccHHHHHHH
Q 020360 47 DALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVI----HGFVDKVVAG 121 (327)
Q Consensus 47 E~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I----~g~~devL~~ 121 (327)
+.++++.++.+.+.+.+|.-+.++|.-..-..|..+...-...|.++..++-.....-...|+.| .|...+++..
T Consensus 16 ~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~ 94 (179)
T cd05005 16 DKIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNA 94 (179)
T ss_pred HhcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHH
Confidence 44667778889999999998888886544344444433333457777776533222222334333 5566666543
No 249
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.79 E-value=1e+02 Score=26.03 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=24.7
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV 96 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII 96 (327)
+..-|++|++-+|..-...-.....|++.|.++|-|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 567799999988887665556667788999988865
No 250
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.79 E-value=4.1e+02 Score=24.37 Aligned_cols=57 Identities=7% Similarity=0.003 Sum_probs=34.8
Q ss_pred eccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC
Q 020360 39 RDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT 101 (327)
Q Consensus 39 RPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT 101 (327)
.++|.+.|. ++.+ ...+.+..||+++.-.. .+.....-...|...|.|+|.-|....
T Consensus 247 ~~~V~~~g~-~~~~---~~~~~~~~ad~~v~ps~--~~e~~~~~~~EAma~G~PvI~s~~~~~ 303 (363)
T cd04955 247 DPRIIFVGP-IYDQ---ELLELLRYAALFYLHGH--SVGGTNPSLLEAMAYGCPVLASDNPFN 303 (363)
T ss_pred CCcEEEccc-cChH---HHHHHHHhCCEEEeCCc--cCCCCChHHHHHHHcCCCEEEecCCcc
Confidence 356666554 3432 34567778898876433 333333334567789999998776543
No 251
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=21.74 E-value=85 Score=30.52 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=38.8
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEE
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIH 112 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~ 112 (327)
+..-|++|++-.|+...........+++.|++++.| |....+....+|+.|.
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~ 176 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIE 176 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEe
Confidence 456799999999988777777777888999888876 4444555566777665
No 252
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.71 E-value=55 Score=27.49 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred hhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCC
Q 020360 62 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK 100 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqp 100 (327)
.+|||+||.|+|+---|. -.|.+++|+..+.
T Consensus 39 ~dAeLviV~G~sipnd~~--------l~GKkv~i~d~~~ 69 (103)
T COG3925 39 NDAELVIVFGSSIPNDSA--------LNGKKVWIGDIER 69 (103)
T ss_pred CcccEEEEeccccCCCcc--------ccCceEEEecHHH
Confidence 478999999999732221 2466777775543
No 253
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=21.62 E-value=84 Score=30.80 Aligned_cols=54 Identities=9% Similarity=-0.076 Sum_probs=37.9
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEcc
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~ 114 (327)
+..-|++|++--|+...-.......+++.|+++|.| |...+++.+.+|+.|.-.
T Consensus 90 ~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ 144 (340)
T PRK11382 90 LDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQ 144 (340)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeC
Confidence 456689999955555555555555677788877755 777888888888776544
No 254
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=21.58 E-value=55 Score=31.86 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=30.8
Q ss_pred CCCCCeecchhhhhhhcCCCCCCCCCCCCCC--ceeeccEEecC
Q 020360 5 PSCGSEYFRDFEVETIGLKETSRRCSDLKCG--AKLRDTVLDWE 46 (327)
Q Consensus 5 ~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~Cg--G~LRPdVV~FG 46 (327)
.+||+.|+++.+..-+.. .+..+||...|. -.++|..+...
T Consensus 193 kkC~HvydrDsI~~~l~~-~~~i~CPv~gC~~~~~~~~~~l~~d 235 (262)
T KOG2979|consen 193 KKCGHVYDRDSIMQILCD-EITIRCPVLGCENPYYIQPGHLDED 235 (262)
T ss_pred cCcCcchhhhhHHHHhcc-CceeecccccCCccccccccccCch
Confidence 479999999987665543 456789988898 56777777543
No 255
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=21.44 E-value=2.9e+02 Score=27.39 Aligned_cols=83 Identities=13% Similarity=0.048 Sum_probs=47.4
Q ss_pred ccEEecCCCCChhhHHHHHHHhhhCCEEEEEc-cCcc--cccCCcchhh--h--hcCCCeEEEEcCC--CCCCCCCccEE
Q 020360 40 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLG-TSLQ--ITPACNLPLK--C--LRGGGKIVIVNLQ--KTPKDKKASLV 110 (327)
Q Consensus 40 PdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLG-TSLq--V~PAa~Lp~~--a--~~~G~~lVIINlq--pT~~D~~adl~ 110 (327)
..=|+|...-+......+.+++++||+ ||+| .|+- |.|.-.++.. | .....++++.|.- |...
T Consensus 151 I~~v~l~~~~~~~~~~~~l~AI~~ADl-IvlgPGSlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni~t~pget------- 222 (309)
T cd07044 151 IDRVFLTPVDEASPSREVLEAIEKADN-IVIGPGSLYTSILPNISVPGIREALKKTXAKKVYVSNIXTQPGET------- 222 (309)
T ss_pred ceEEEEcCCCCCCCCHHHHHHHHhCCE-EEECCCcCHHHhhhhcCcHhHHHHHHhcCCCeEEECCCCCCCccc-------
Confidence 334566543212235678899999994 5666 4442 3454444432 2 2334567777873 2221
Q ss_pred EEccHHHHHHHHHHHhcccC
Q 020360 111 IHGFVDKVVAGVMDLLNLRI 130 (327)
Q Consensus 111 I~g~~devL~~L~k~Lg~~I 130 (327)
..-.+.+.+..+.+++|..+
T Consensus 223 ~~~s~~~~v~~~~~~~~~~~ 242 (309)
T cd07044 223 DEYTSSDHAEALQRHLGRPF 242 (309)
T ss_pred CCCCHHHHHHHHHHhcCCCc
Confidence 23357778888888887543
No 256
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=21.37 E-value=5.1e+02 Score=25.24 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=42.9
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC---CCCCccEEE--EccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVI--HGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~---~D~~adl~I--~g~~devL~~L~k~Lg 127 (327)
.......||++++ +|..-.++..-...|...|.|+|.-|....+ .+...-+.+ .++.+++...|.+.|.
T Consensus 270 l~~~~~~aDv~v~--pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 270 MHNYYPLADLVVV--PSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred HHHHHHhCCEEEe--CCCCccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 4567788999886 4432245444456788899999988865433 123333333 4577777766666554
No 257
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=21.32 E-value=1.5e+02 Score=32.96 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=32.1
Q ss_pred HHhhhCCEEEEEccCcccccCC----cc-hh-----hhhcC---------CCeEEEEcCCCCCCCCCcc
Q 020360 59 KHCKIADVVLCLGTSLQITPAC----NL-PL-----KCLRG---------GGKIVIVNLQKTPKDKKAS 108 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa----~L-p~-----~a~~~---------G~~lVIINlqpT~~D~~ad 108 (327)
+.+..||++|++|+.....-.. .+ +. .++++ |+++|+|++..|..-..+|
T Consensus 216 ~D~~~Ad~iv~~G~Np~et~~~~~~~~~~~~~~~~~~ak~~~~~~g~~~~~~kiIvIDPr~t~ta~~ad 284 (806)
T TIGR02693 216 EDARLADTIVLWGANSYETQTNYFLNHWLPNLQGATVAKKKQAFPGEPAEPGYLIVVDPRRTSSYTVAE 284 (806)
T ss_pred HHHHhCCEEEEECCChHHhhhhhhHhhhhhhhhHHHHhhhhhcccccccCCceEEEEcCCCCchhhhhc
Confidence 4567999999999986544211 11 11 12222 4799999999988655443
No 258
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=21.31 E-value=4.1e+02 Score=23.58 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=43.1
Q ss_pred ccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC---CCCccEEEE-ccH
Q 020360 40 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK---DKKASLVIH-GFV 115 (327)
Q Consensus 40 PdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~---D~~adl~I~-g~~ 115 (327)
++|.+.|. .+ ...+..+.||++|.-... .....-...|...|.|+|.-+.....- +....+.+. ++.
T Consensus 246 ~~v~~~g~--~~----~~~~~~~~adi~i~ps~~---e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~ 316 (359)
T cd03808 246 GRVEFLGF--RD----DVPELLAAADVFVLPSYR---EGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDA 316 (359)
T ss_pred ceEEEeec--cc----cHHHHHHhccEEEecCcc---cCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCH
Confidence 45665554 12 244567789987764322 333333456778899988876553321 122234443 457
Q ss_pred HHHHHHHHHHh
Q 020360 116 DKVVAGVMDLL 126 (327)
Q Consensus 116 devL~~L~k~L 126 (327)
+++...|.+.+
T Consensus 317 ~~~~~~i~~l~ 327 (359)
T cd03808 317 EALADAIERLI 327 (359)
T ss_pred HHHHHHHHHHH
Confidence 77766666544
No 259
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=21.30 E-value=4.2e+02 Score=25.69 Aligned_cols=81 Identities=14% Similarity=-0.016 Sum_probs=46.3
Q ss_pred eccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC--CCCccEEEEccHH
Q 020360 39 RDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVD 116 (327)
Q Consensus 39 RPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~--D~~adl~I~g~~d 116 (327)
.++|.+.|. +++ ....+..||++++- |..-.....-...|...|.|+|.-+...... .....+.+.++.+
T Consensus 279 ~~~V~~~G~-v~~-----~~~~~~~adv~v~P--s~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~~~~~~g~lv~~~~~ 350 (397)
T TIGR03087 279 LPGVTVTGS-VAD-----VRPYLAHAAVAVAP--LRIARGIQNKVLEAMAMAKPVVASPEAAEGIDALPGAELLVAADPA 350 (397)
T ss_pred CCCeEEeee-cCC-----HHHHHHhCCEEEec--ccccCCcccHHHHHHHcCCCEEecCcccccccccCCcceEeCCCHH
Confidence 355655553 332 34567889998763 3211222222446778899998877432222 2234566667888
Q ss_pred HHHHHHHHHhc
Q 020360 117 KVVAGVMDLLN 127 (327)
Q Consensus 117 evL~~L~k~Lg 127 (327)
++...|.+.+.
T Consensus 351 ~la~ai~~ll~ 361 (397)
T TIGR03087 351 DFAAAILALLA 361 (397)
T ss_pred HHHHHHHHHHc
Confidence 87777766654
No 260
>PRK05638 threonine synthase; Validated
Probab=21.29 E-value=44 Score=34.01 Aligned_cols=26 Identities=38% Similarity=0.815 Sum_probs=18.1
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeec
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRD 40 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRP 40 (327)
-+|..||++|..+. ...|. |+|.|..
T Consensus 2 l~C~~Cg~~~~~~~----------~~~C~---c~~~l~~ 27 (442)
T PRK05638 2 MKCPKCGREYNSYI----------PPFCI---CGELLEI 27 (442)
T ss_pred eEeCCCCCCCCCCC----------ceecC---CCCcEEE
Confidence 37999999996331 25784 9887653
No 261
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=21.23 E-value=3.1e+02 Score=24.54 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=45.0
Q ss_pred eeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC--CCCCccEEE-Ecc
Q 020360 38 LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP--KDKKASLVI-HGF 114 (327)
Q Consensus 38 LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~--~D~~adl~I-~g~ 114 (327)
+.++|.++|. .. ......+.||++|.-... .....-+..|...|.|+|.-|..... ... ..+.+ .++
T Consensus 249 ~~~~v~~~g~-~~-----~~~~~~~~adi~v~ps~~---e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~-~g~~~~~~~ 318 (365)
T cd03807 249 LEDKVILLGE-RS-----DVPALLNALDVFVLSSLS---EGFPNVLLEAMACGLPVVATDVGDNAELVGD-TGFLVPPGD 318 (365)
T ss_pred CCceEEEccc-cc-----cHHHHHHhCCEEEeCCcc---ccCCcHHHHHHhcCCCEEEcCCCChHHHhhc-CCEEeCCCC
Confidence 3456666652 11 234567889987764332 33333345677889998876654332 112 23444 356
Q ss_pred HHHHHHHHHHHhc
Q 020360 115 VDKVVAGVMDLLN 127 (327)
Q Consensus 115 ~devL~~L~k~Lg 127 (327)
.+++...+.+.+.
T Consensus 319 ~~~l~~~i~~l~~ 331 (365)
T cd03807 319 PEALAEAIEALLA 331 (365)
T ss_pred HHHHHHHHHHHHh
Confidence 7777666666655
No 262
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=21.18 E-value=48 Score=19.24 Aligned_cols=15 Identities=27% Similarity=0.840 Sum_probs=11.4
Q ss_pred cCCCCCCeecchhhh
Q 020360 3 ACPSCGSEYFRDFEV 17 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~ 17 (327)
.|..|++.|.....+
T Consensus 2 ~C~~C~~~f~~~~~l 16 (23)
T PF00096_consen 2 KCPICGKSFSSKSNL 16 (23)
T ss_dssp EETTTTEEESSHHHH
T ss_pred CCCCCCCccCCHHHH
Confidence 489999999865543
No 263
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.87 E-value=31 Score=27.82 Aligned_cols=40 Identities=23% Similarity=0.531 Sum_probs=25.0
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCcee-----eccEEecCCC
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL-----RDTVLDWEDA 48 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~L-----RPdVV~FGE~ 48 (327)
.|..|+.+|+. ++.+.+. ..-.|+ .|++.| ++.|+|=|-.
T Consensus 14 ~c~~cg~~~dv---vq~~~dd-plt~ce--~c~a~~kk~l~~vgi~fKGSG 58 (82)
T COG2331 14 ECTECGNRFDV---VQAMTDD-PLTTCE--ECGARLKKLLNAVGIVFKGSG 58 (82)
T ss_pred eecccchHHHH---HHhcccC-ccccCh--hhChHHHHhhccceEEEecce
Confidence 59999988752 3333332 245788 799765 4667765543
No 264
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.76 E-value=1.9e+02 Score=31.64 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=32.5
Q ss_pred HHhhhCCEEEEEccCcccc-cCC---cc-hh-----h-----hhcCC-----CeEEEEcCCCCCCCCCcc
Q 020360 59 KHCKIADVVLCLGTSLQIT-PAC---NL-PL-----K-----CLRGG-----GKIVIVNLQKTPKDKKAS 108 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~-PAa---~L-p~-----~-----a~~~G-----~~lVIINlqpT~~D~~ad 108 (327)
+.++.||++|++|+..... |.. .+ +. . +.+.| +++|+|++..|..-..+|
T Consensus 219 ~Die~Ad~Il~~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA~~Ad 288 (676)
T cd02756 219 EDARLADTIVLWGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAE 288 (676)
T ss_pred HHHHhCCEEEEECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchhHhhh
Confidence 4577899999999875433 321 11 10 0 11234 699999999998766665
No 265
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=20.71 E-value=6.2e+02 Score=22.70 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=47.0
Q ss_pred ccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcc---hhhhhcCCCeEEEEcCCCCCC---CCCccEEEE-
Q 020360 40 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNL---PLKCLRGGGKIVIVNLQKTPK---DKKASLVIH- 112 (327)
Q Consensus 40 PdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~L---p~~a~~~G~~lVIINlqpT~~---D~~adl~I~- 112 (327)
++|.+.| .++.+ ...+.+..||++|....+-... ...+ ...|...|.++|.-+...... +....+.+.
T Consensus 275 ~~v~~~g-~~~~~---~~~~~~~~~di~i~~~~~~~~~-~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~ 349 (394)
T cd03794 275 DNVTFLG-RVPKE---ELPELLAAADVGLVPLKPGPAF-EGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPP 349 (394)
T ss_pred CcEEEeC-CCChH---HHHHHHHhhCeeEEeccCcccc-cccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCC
Confidence 6777777 55543 3556778899998865433210 1111 235677899988776654431 112223333
Q ss_pred ccHHHHHHHHHHHh
Q 020360 113 GFVDKVVAGVMDLL 126 (327)
Q Consensus 113 g~~devL~~L~k~L 126 (327)
++.+++...|.+.+
T Consensus 350 ~~~~~l~~~i~~~~ 363 (394)
T cd03794 350 GDPEALAAAILELL 363 (394)
T ss_pred CCHHHHHHHHHHHH
Confidence 46777666666655
No 266
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=20.55 E-value=5.2e+02 Score=23.56 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=46.2
Q ss_pred ccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCc---ccccCCcchhhhhcCCCeEEEEcCCCCC---CCCCccEEEE-
Q 020360 40 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSL---QITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVIH- 112 (327)
Q Consensus 40 PdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSL---qV~PAa~Lp~~a~~~G~~lVIINlqpT~---~D~~adl~I~- 112 (327)
++|.+.| .+|.+ .....+..||++|.-.... ...+...-...|...|.++|..|....+ .+....+.+.
T Consensus 236 ~~v~~~g-~~~~~---~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~ 311 (355)
T cd03799 236 DRVTLLG-AKSQE---EVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPP 311 (355)
T ss_pred CeEEECC-cCChH---HHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCC
Confidence 4555555 34532 3456677899877632211 0022222234567789999987765443 1222345454
Q ss_pred ccHHHHHHHHHHHhc
Q 020360 113 GFVDKVVAGVMDLLN 127 (327)
Q Consensus 113 g~~devL~~L~k~Lg 127 (327)
++++++...|.+.+.
T Consensus 312 ~~~~~l~~~i~~~~~ 326 (355)
T cd03799 312 GDPEALADAIERLLD 326 (355)
T ss_pred CCHHHHHHHHHHHHh
Confidence 377777777766554
No 267
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=20.14 E-value=6.3e+02 Score=25.19 Aligned_cols=82 Identities=11% Similarity=-0.009 Sum_probs=51.0
Q ss_pred eccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCC-CCC--C----CCCccEEE
Q 020360 39 RDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ-KTP--K----DKKASLVI 111 (327)
Q Consensus 39 RPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlq-pT~--~----D~~adl~I 111 (327)
.+.|.|.| .+|.+ .....++.||++|. ||.. .++..-+..|...|.++|..|.. +.. . +...-+.
T Consensus 304 ~~~V~f~g-~v~~~---~l~~~l~~adv~v~--~s~~-E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l- 375 (419)
T cd03806 304 EDKVEFVV-NAPFE---ELLEELSTASIGLH--TMWN-EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFL- 375 (419)
T ss_pred CCeEEEec-CCCHH---HHHHHHHhCeEEEE--CCcc-CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEE-
Confidence 45666665 45653 34567788998876 5553 66665566788889988888753 321 1 2222333
Q ss_pred EccHHHHHHHHHHHhcc
Q 020360 112 HGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 112 ~g~~devL~~L~k~Lg~ 128 (327)
..+.++....|.+.+..
T Consensus 376 ~~d~~~la~ai~~ll~~ 392 (419)
T cd03806 376 ASTAEEYAEAIEKILSL 392 (419)
T ss_pred eCCHHHHHHHHHHHHhC
Confidence 35788777777776653
Done!