Query 020360
Match_columns 327
No_of_seqs 173 out of 1185
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k35_A NAD-dependent deacetyla 100.0 2.6E-31 8.7E-36 255.6 9.8 134 2-135 139-278 (318)
2 3pki_A NAD-dependent deacetyla 100.0 7.1E-31 2.4E-35 255.4 10.0 134 2-135 139-278 (355)
3 1yc5_A NAD-dependent deacetyla 99.9 7.1E-28 2.4E-32 222.8 11.3 124 2-128 122-245 (246)
4 3glr_A NAD-dependent deacetyla 99.9 8.6E-27 2.9E-31 221.1 11.8 123 2-129 140-266 (285)
5 4iao_A NAD-dependent histone d 99.9 8.8E-27 3E-31 234.3 11.5 129 2-133 300-461 (492)
6 1ma3_A SIR2-AF2, transcription 99.9 1.3E-26 4.5E-31 215.3 11.4 123 2-127 124-247 (253)
7 1m2k_A Silent information regu 99.9 1.7E-26 5.9E-31 214.1 9.9 120 2-127 122-241 (249)
8 2hjh_A NAD-dependent histone d 99.9 3.2E-26 1.1E-30 222.4 12.0 130 2-134 162-324 (354)
9 3riy_A NAD-dependent deacetyla 99.9 2.9E-26 1E-30 215.6 9.2 122 2-123 135-272 (273)
10 1q1a_A HST2 protein; ternary c 99.9 1.3E-25 4.4E-30 212.3 11.4 125 2-129 137-280 (289)
11 1q14_A HST2 protein; histone d 99.9 3.6E-25 1.2E-29 215.9 11.8 125 2-129 145-288 (361)
12 1s5p_A NAD-dependent deacetyla 99.9 3.6E-25 1.2E-29 203.6 10.3 118 2-127 114-231 (235)
13 3u31_A SIR2A, transcriptional 99.9 3.7E-25 1.3E-29 210.2 9.3 122 2-127 155-280 (290)
14 1j8f_A SIRT2, sirtuin 2, isofo 99.9 8E-25 2.7E-29 210.5 9.6 124 2-129 160-305 (323)
15 3rls_A YAF9, protein AF-9 homo 95.0 0.091 3.1E-06 46.6 8.7 83 151-236 30-112 (175)
16 3qrl_A Transcription initiatio 94.7 0.068 2.3E-06 45.8 6.8 109 138-252 11-135 (140)
17 2c31_A Oxalyl-COA decarboxylas 94.4 0.12 4E-06 51.9 8.9 71 57-127 266-338 (568)
18 2q28_A Oxalyl-COA decarboxylas 93.1 0.24 8.3E-06 49.5 8.4 69 57-127 264-334 (564)
19 1ybh_A Acetolactate synthase, 92.7 0.29 1E-05 49.3 8.4 70 56-127 271-342 (590)
20 2pgn_A Cyclohexane-1,2-dione h 92.4 0.31 1E-05 49.3 8.2 69 56-127 264-334 (589)
21 2iht_A Carboxyethylarginine sy 92.4 0.25 8.4E-06 49.7 7.4 68 57-127 281-351 (573)
22 4feg_A Pyruvate oxidase; carba 92.2 0.34 1.2E-05 49.1 8.1 69 56-128 269-339 (603)
23 1ozh_A ALS, acetolactate synth 92.0 0.35 1.2E-05 48.6 8.0 67 57-127 268-336 (566)
24 2uz1_A Benzaldehyde lyase; thi 91.5 0.28 9.4E-06 49.2 6.6 66 61-127 267-334 (563)
25 3eya_A Pyruvate dehydrogenase 91.3 0.38 1.3E-05 48.1 7.3 65 56-127 258-324 (549)
26 3lq1_A 2-succinyl-5-enolpyruvy 91.2 0.34 1.2E-05 48.8 6.9 68 58-127 284-353 (578)
27 1q6z_A BFD, BFDC, benzoylforma 89.7 0.42 1.4E-05 47.3 6.0 71 56-127 259-330 (528)
28 1v5e_A Pyruvate oxidase; oxido 89.1 0.95 3.3E-05 45.7 8.2 67 56-127 262-331 (590)
29 2pan_A Glyoxylate carboligase; 89.1 0.47 1.6E-05 48.1 5.9 70 56-127 286-357 (616)
30 2x7j_A 2-succinyl-5-enolpyruvy 88.1 0.73 2.5E-05 46.6 6.5 66 59-127 306-373 (604)
31 3hww_A 2-succinyl-5-enolpyruvy 87.9 0.59 2E-05 46.8 5.7 65 56-122 271-337 (556)
32 1o97_D Electron transferring f 85.2 0.78 2.7E-05 43.7 4.6 59 64-127 260-319 (320)
33 1t9b_A Acetolactate synthase, 83.8 1.1 3.8E-05 46.4 5.4 71 57-127 350-429 (677)
34 1efv_A Electron transfer flavo 81.7 2 7E-05 40.6 5.9 60 63-127 253-313 (315)
35 2vk8_A Pyruvate decarboxylase 80.6 1.9 6.5E-05 43.0 5.6 68 56-127 271-338 (563)
36 1efp_A ETF, protein (electron 80.4 2.1 7.1E-05 40.5 5.5 59 63-126 248-307 (307)
37 1ovm_A Indole-3-pyruvate decar 79.2 2.4 8.3E-05 42.0 5.8 67 56-127 269-335 (552)
38 2vbi_A Pyruvate decarboxylase; 76.8 2.8 9.7E-05 41.8 5.5 67 57-127 270-336 (566)
39 2wvg_A PDC, pyruvate decarboxy 76.3 3 0.0001 41.7 5.5 67 57-127 270-336 (568)
40 2e7z_A Acetylene hydratase AHY 74.9 1.5 5E-05 45.3 2.9 52 61-112 158-212 (727)
41 2vpz_A Thiosulfate reductase; 74.6 2.4 8.1E-05 44.1 4.4 53 61-113 197-252 (765)
42 1pno_A NAD(P) transhydrogenase 71.3 6.5 0.00022 34.8 5.7 85 41-126 73-179 (180)
43 2vbf_A Branched-chain alpha-ke 68.2 2.4 8.2E-05 42.4 2.6 68 56-127 288-355 (570)
44 2fsv_C NAD(P) transhydrogenase 66.4 6.6 0.00023 35.4 4.8 87 39-126 94-202 (203)
45 1djl_A Transhydrogenase DIII; 62.5 7.3 0.00025 35.2 4.3 88 39-127 93-202 (207)
46 1h0h_A Formate dehydrogenase ( 61.1 6.6 0.00023 42.2 4.5 53 60-112 181-235 (977)
47 1eu1_A Dimethyl sulfoxide redu 59.1 3.2 0.00011 43.2 1.6 53 60-112 174-237 (780)
48 2nxw_A Phenyl-3-pyruvate decar 59.1 13 0.00043 37.2 5.9 68 56-127 282-349 (565)
49 2ivf_A Ethylbenzene dehydrogen 58.6 5.8 0.0002 42.6 3.5 52 61-112 244-297 (976)
50 1d4o_A NADP(H) transhydrogenas 55.3 7.2 0.00025 34.6 2.9 86 41-127 72-179 (184)
51 2iv2_X Formate dehydrogenase H 54.2 4.4 0.00015 41.7 1.6 54 60-113 163-218 (715)
52 1ti6_A Pyrogallol hydroxytrans 54.0 3.8 0.00013 43.3 1.1 52 60-111 205-264 (875)
53 2k5c_A Uncharacterized protein 54.0 13 0.00044 29.3 3.9 54 1-62 8-79 (95)
54 1kqf_A FDH-N alpha, formate de 53.9 6.1 0.00021 42.7 2.7 54 60-113 219-275 (1015)
55 2nap_A Protein (periplasmic ni 52.4 5.8 0.0002 40.7 2.2 55 60-114 163-221 (723)
56 1q16_A Respiratory nitrate red 52.3 4.8 0.00016 45.0 1.6 53 60-112 243-297 (1247)
57 3trj_A Phosphoheptose isomeras 50.4 17 0.00058 31.4 4.6 56 60-115 111-170 (201)
58 2kdx_A HYPA, hydrogenase/ureas 50.2 6.6 0.00022 31.7 1.8 24 3-37 75-99 (119)
59 3i9v_3 NADH-quinone oxidoreduc 50.1 13 0.00044 39.0 4.4 28 88-115 443-470 (783)
60 2i2w_A Phosphoheptose isomeras 49.7 14 0.00049 31.8 4.0 57 59-115 127-184 (212)
61 2bru_C NAD(P) transhydrogenase 49.4 6.4 0.00022 34.9 1.7 73 54-126 96-186 (186)
62 1tk9_A Phosphoheptose isomeras 48.9 9.1 0.00031 31.8 2.5 57 59-115 106-163 (188)
63 1tmo_A TMAO reductase, trimeth 48.9 6 0.00021 41.4 1.7 51 61-111 208-273 (829)
64 4ayb_P DNA-directed RNA polyme 46.8 9.6 0.00033 26.9 1.9 26 3-35 5-30 (48)
65 2xbl_A Phosphoheptose isomeras 45.9 8.7 0.0003 32.2 1.9 58 59-116 112-170 (198)
66 2yva_A DNAA initiator-associat 44.8 13 0.00043 31.2 2.8 57 59-115 105-165 (196)
67 3a43_A HYPD, hydrogenase nicke 44.6 8.4 0.00029 32.2 1.6 13 3-15 72-84 (139)
68 3cf4_G Acetyl-COA decarboxylas 44.0 11 0.00038 31.8 2.3 63 59-127 103-168 (170)
69 3sho_A Transcriptional regulat 43.5 9.6 0.00033 31.7 1.8 75 38-114 64-139 (187)
70 3c2q_A Uncharacterized conserv 42.6 12 0.00041 36.2 2.5 66 58-127 268-339 (345)
71 1twf_L ABC10-alpha, DNA-direct 41.8 14 0.00047 27.8 2.3 24 3-36 30-53 (70)
72 3oy2_A Glycosyltransferase B73 37.9 86 0.0029 28.4 7.5 79 42-127 255-354 (413)
73 3ml1_A NAPA, periplasmic nitra 37.5 20 0.00068 37.7 3.5 53 60-112 175-231 (802)
74 1m3s_A Hypothetical protein YC 37.0 13 0.00043 31.0 1.5 52 60-111 76-128 (186)
75 1x92_A APC5045, phosphoheptose 36.5 14 0.00048 31.1 1.8 57 59-115 109-169 (199)
76 3dnf_A ISPH, LYTB, 4-hydroxy-3 36.3 51 0.0017 31.2 5.7 86 40-127 184-279 (297)
77 2gmg_A Hypothetical protein PF 35.0 15 0.00053 29.8 1.7 29 3-41 69-99 (105)
78 3fxa_A SIS domain protein; str 34.4 14 0.00047 31.3 1.4 54 60-113 89-143 (201)
79 2f62_A Nucleoside 2-deoxyribos 33.7 95 0.0033 26.3 6.6 73 52-127 56-159 (161)
80 2xhz_A KDSD, YRBH, arabinose 5 32.2 15 0.00053 30.3 1.3 55 60-114 93-148 (183)
81 3fro_A GLGA glycogen synthase; 32.1 1.4E+02 0.0049 26.7 8.0 83 41-129 311-396 (439)
82 1vim_A Hypothetical protein AF 32.0 13 0.00044 31.8 0.8 53 61-113 87-140 (200)
83 1vd4_A Transcription initiatio 30.9 26 0.00088 23.9 2.1 33 3-37 16-48 (62)
84 3h0g_L DNA-directed RNA polyme 29.3 26 0.00089 25.9 1.9 25 3-37 23-47 (63)
85 1jeo_A MJ1247, hypothetical pr 28.9 35 0.0012 28.0 3.0 52 61-113 80-132 (180)
86 3jy6_A Transcriptional regulat 27.4 2.7E+02 0.0092 23.6 8.6 58 62-127 62-119 (276)
87 2epq_A POZ-, at HOOK-, and zin 26.0 37 0.0013 20.9 2.1 31 3-35 12-45 (45)
88 3os4_A Naprtase, nicotinate ph 25.6 77 0.0026 31.1 5.1 83 42-131 310-397 (407)
89 6rxn_A Rubredoxin; electron tr 25.2 42 0.0014 23.2 2.3 32 3-36 6-38 (46)
90 2f9f_A First mannosyl transfer 25.2 93 0.0032 25.0 4.9 81 40-127 78-161 (177)
91 3etn_A Putative phosphosugar i 24.7 26 0.0009 30.4 1.5 55 59-113 102-159 (220)
92 2khz_A C-MYC-responsive protei 23.9 1.5E+02 0.0052 24.7 6.1 74 53-131 67-154 (165)
93 3m9w_A D-xylose-binding peripl 23.6 3.6E+02 0.012 23.3 9.5 62 62-127 57-118 (313)
94 4hl7_A Naprtase, nicotinate ph 22.8 75 0.0026 31.6 4.5 81 42-129 320-413 (446)
95 3h75_A Periplasmic sugar-bindi 22.8 2.4E+02 0.0081 25.0 7.6 49 51-102 47-98 (350)
96 3szu_A ISPH, 4-hydroxy-3-methy 22.1 68 0.0023 30.8 3.9 74 53-127 215-295 (328)
97 3cvj_A Putative phosphoheptose 22.1 26 0.00088 30.7 0.9 52 61-112 106-169 (243)
98 3hba_A Putative phosphosugar i 21.9 58 0.002 30.4 3.4 52 62-113 89-141 (334)
99 3egc_A Putative ribose operon 20.8 3.9E+02 0.013 22.7 8.7 58 62-126 63-120 (291)
100 1g8k_A Arsenite oxidase; molyb 20.8 59 0.002 33.9 3.5 49 60-108 221-288 (825)
101 2a3n_A Putative glucosamine-fr 20.6 40 0.0014 31.5 2.0 54 61-114 100-154 (355)
102 3tb6_A Arabinose metabolism tr 20.5 3.5E+02 0.012 22.9 7.9 62 62-126 70-132 (298)
No 1
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=255.56 Aligned_cols=134 Identities=49% Similarity=0.845 Sum_probs=118.9
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCC------CCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSD------LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQ 75 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~------~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLq 75 (327)
.+|..|++.|.+++.......+++++.|+. ..|||.|||+||||||++|.+.++.|.+++++|||+|||||||+
T Consensus 139 ~~C~~C~~~~~~~~~~~~~~~~p~~~~C~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~ 218 (318)
T 3k35_A 139 EECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQ 218 (318)
T ss_dssp EEETTTCCEEECSSCCSCCSSCEEEEECCC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCC
T ss_pred eEeCCCCCccchHHhhhhcccCCCCCcCcccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCC
Confidence 479999999988765433322233456742 25999999999999999999999999999999999999999999
Q ss_pred cccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhcccCCCccc
Q 020360 76 ITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIR 135 (327)
Q Consensus 76 V~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~~IP~~~~ 135 (327)
|+|+++||..+.+.|+++++||+++|+.|..+|++|+|+|+++|++|++.|||+||+|+.
T Consensus 219 V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~~~~ 278 (318)
T 3k35_A 219 IRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDG 278 (318)
T ss_dssp STTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCCCCS
T ss_pred chhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999998999999999999999999999999999999999999999999999986
No 2
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=99.97 E-value=7.1e-31 Score=255.40 Aligned_cols=134 Identities=49% Similarity=0.851 Sum_probs=119.5
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCC------CCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSD------LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQ 75 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~------~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLq 75 (327)
.+|..|++.|.+++....+..+.+++.|+. ..|||.|||+||||||++|.+.++.|.+++++|||+|||||||+
T Consensus 139 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~ 218 (355)
T 3pki_A 139 EECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQ 218 (355)
T ss_dssp EEETTTCCEEEBSSCCSCCSSCEEEEECCCCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCC
T ss_pred eeeCCCCCccchHHhhhhcccCCCCCccccccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCC
Confidence 479999999988765433322233456742 26999999999999999999999999999999999999999999
Q ss_pred cccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhcccCCCccc
Q 020360 76 ITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIR 135 (327)
Q Consensus 76 V~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~~IP~~~~ 135 (327)
|+|+++||..+.+.|+++|+||+++|..|..+|++|+|+|+++|++|++.|||+||+|+.
T Consensus 219 V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~iP~~~~ 278 (355)
T 3pki_A 219 IRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDG 278 (355)
T ss_dssp STTGGGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTCCCCCCCS
T ss_pred chhhhhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999998999999999999999999999999999999999999999999999985
No 3
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=99.95 E-value=7.1e-28 Score=222.83 Aligned_cols=124 Identities=29% Similarity=0.468 Sum_probs=114.0
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|+.+...+.+.. ...|+|+ .|||.|||+||||||++|++.++.|.+++++||++|||||||+|+|+++
T Consensus 122 ~~C~~C~~~~~~~~~~~~~~~-~~~p~C~--~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~ 198 (246)
T 1yc5_A 122 YYCVRCEKKYTVEDVIKKLES-SDVPLCD--DCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAE 198 (246)
T ss_dssp EEETTTCCEEEHHHHHHHTTT-CSSCBCT--TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGG
T ss_pred eEcCCCCCCCcHHHHHHHhcc-CCCCCCC--CCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHH
Confidence 479999999988776554432 2579999 8999999999999999999889999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhcc
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
|+..++..|+++|+||+++|+.|..+++.|+|+++++|++|++.||+
T Consensus 199 l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~ 245 (246)
T 1yc5_A 199 LPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245 (246)
T ss_dssp HHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 99988888999999999999999999999999999999999999996
No 4
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=99.94 E-value=8.6e-27 Score=221.10 Aligned_cols=123 Identities=20% Similarity=0.341 Sum_probs=108.1
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|..+.....+. ....|+|+ .|||.|||+||||||++|++.+ .+.+.+.+|||+|||||||+|+|++.
T Consensus 140 ~~C~~C~~~~~~~~~~~~i~-~~~~P~C~--~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aDlllviGTSl~V~Paa~ 215 (285)
T 3glr_A 140 ATCTVCQRPFPGEDIRADVM-ADRVPRCP--VCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMADLLLILGTSLEVEPFAS 215 (285)
T ss_dssp EEETTTCCEEEGGGGHHHHH-TTCCCBCT--TTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCSEEEEESCCCCEETTGG
T ss_pred EEECCCCCcCCHHHHHHHhh-cCCCCCCC--CCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCCEEEEeCCCCccccHHH
Confidence 47999999999876554443 23579999 7999999999999999999766 56788899999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCC----CCCCccEEEEccHHHHHHHHHHHhccc
Q 020360 82 LPLKCLRGGGKIVIVNLQKTP----KDKKASLVIHGFVDKVVAGVMDLLNLR 129 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~----~D~~adl~I~g~~devL~~L~k~Lg~~ 129 (327)
|+..+ +.|+++|+||++++. .+..+|+.+.|+|++++++|++.|||+
T Consensus 216 l~~~~-~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw~ 266 (285)
T 3glr_A 216 LTEAV-RSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGWT 266 (285)
T ss_dssp GGGSS-CTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTCH
T ss_pred HHHHH-hCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCCH
Confidence 99754 568899999999996 578899999999999999999999996
No 5
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.8e-27 Score=234.31 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=110.6
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCC---------------------------------CCCceeeccEEecCCC
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDL---------------------------------KCGAKLRDTVLDWEDA 48 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~---------------------------------~CgG~LRPdVV~FGE~ 48 (327)
.+|..|++.|.++.+.+.+.. ...|.|+.+ .|+|.|||+||||||+
T Consensus 300 ~~C~~Cg~~~~~e~i~~~i~~-~~~P~Cp~Cg~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~c~~cgG~LRPdIVfFGE~ 378 (492)
T 4iao_A 300 ATCVTCHWNLPGERIFNKIRN-LELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEA 378 (492)
T ss_dssp EEETTTCCEEEGGGGHHHHHT-TCCCBCTTTHHHHHHHSTTCCCCC--------CCTTCCTTCCTTTTBEEESSCCBTSB
T ss_pred eecCCCCCcCCHHHHHHHHhc-cCCCCCcccccccccccccccccccccccccccccccccccccCCCcCCCCEEECCCC
Confidence 479999999988766544321 234566521 3569999999999999
Q ss_pred CChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhcc
Q 020360 49 LPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 49 LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
+|++.++.|.+++++|||+|||||||+|+|+++|+..+ +.|+++|+||+++|.. ..+|+.|.|+||++++.|+++|||
T Consensus 379 LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a-~~~~p~ViIN~ept~~-~~~Dl~l~G~cdevv~~L~~~LGw 456 (492)
T 4iao_A 379 LPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNMV-PSHVPQVLINRDPVKH-AEFDLSLLGYCDDIAAMVAQKCGW 456 (492)
T ss_dssp CCHHHHHHHHHHTTTCSEEEEESCCCCEETGGGHHHHS-BTTSCEEEEESSCCTT-SCCSEEEESCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhhCCEEEEeccCCCccchhhHHHHH-hcCCcEEEEcCCCCCC-CCccEEEeCCHHHHHHHHHHHhCC
Confidence 99998999999999999999999999999999999876 5788999999999985 568999999999999999999999
Q ss_pred cCCCc
Q 020360 129 RIPPY 133 (327)
Q Consensus 129 ~IP~~ 133 (327)
+||+-
T Consensus 457 ~ip~~ 461 (492)
T 4iao_A 457 TIPHK 461 (492)
T ss_dssp CCCST
T ss_pred CCChH
Confidence 99973
No 6
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=99.93 E-value=1.3e-26 Score=215.30 Aligned_cols=123 Identities=27% Similarity=0.457 Sum_probs=112.2
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc-eeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCC
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA-KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPAC 80 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG-~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa 80 (327)
.+|..|++.|+.+...+.+.. ...|+|+ .||| .|||+||||||++|++.++.|.+++++||++|||||||+|+|++
T Consensus 124 ~~C~~C~~~~~~~~~~~~~~~-~~~p~C~--~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~ 200 (253)
T 1ma3_A 124 LDCLDCHETYDWSEFVEDFNK-GEIPRCR--KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAA 200 (253)
T ss_dssp EEETTTCCEEEGGGTHHHHHT-TCCCCCT--TTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGG
T ss_pred eeeCCCCCcCcHHHHHHHhcc-CCCCCCC--CCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHH
Confidence 479999999988776554432 2479999 8999 99999999999999988999999999999999999999999999
Q ss_pred cchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 81 NLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 81 ~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
+|+..+...|+++|+||+++|+.|..+++.|+|+++++|++|++.|.
T Consensus 201 ~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 201 ELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVK 247 (253)
T ss_dssp GHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHHH
Confidence 99998888899999999999999999999999999999999998874
No 7
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=99.93 E-value=1.7e-26 Score=214.06 Aligned_cols=120 Identities=28% Similarity=0.488 Sum_probs=109.7
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|+.+..+ . ....|+|+ .|||.|||+||||||++|++.++.|.+++++||++|||||||+|+|+++
T Consensus 122 ~~C~~C~~~~~~~~~~---~-~~~~p~C~--~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~ 195 (249)
T 1m2k_A 122 VRCTSCNNSFEVESAP---K-IPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAAS 195 (249)
T ss_dssp EEESSSSCEEECSSCC---C-SSSCCBCS--SSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGG
T ss_pred eEeCCCCCcccchhhc---c-CCCCCCCC--CCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHH
Confidence 4699999999876542 1 22479999 8999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
|+..++..|+++|+||+++|+.|..+++.|+|+++++|++|++.|.
T Consensus 196 l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 196 LPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHHH
Confidence 9998888999999999999999999999999999999999998874
No 8
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.2e-26 Score=222.38 Aligned_cols=130 Identities=19% Similarity=0.276 Sum_probs=112.6
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCC---------------------------------CCCceeeccEEecCCC
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDL---------------------------------KCGAKLRDTVLDWEDA 48 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~---------------------------------~CgG~LRPdVV~FGE~ 48 (327)
.+|..|++.|+.+...+.+.. ...|.|+.+ .|+|.|||+||||||+
T Consensus 162 ~~C~~C~~~~~~~~~~~~~~~-~~~P~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~lrPdVV~FGE~ 240 (354)
T 2hjh_A 162 ATCVTCHWNLPGERIFNKIRN-LELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEA 240 (354)
T ss_dssp EEETTTCCEEEGGGGHHHHHT-TCCCBCTTTHHHHHHHCCC-----------------CCTTSCTTTTBEEEEECCBTSB
T ss_pred cccCCCCCcCCHHHHHHHhhc-cCCCcCccccccccccccccccccccccccccccccccccccccCCeeCCChhhcccc
Confidence 479999999988776555432 235777621 3569999999999999
Q ss_pred CChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhcc
Q 020360 49 LPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 49 LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg~ 128 (327)
+|++.++.|.+++++|||+|||||||+|+|+++|+..+ +.|+++|+||+++|..+ .+|+.|+|+|+++|++|++.|||
T Consensus 241 lp~~~~~~a~~~~~~aDllLviGTSL~V~Paa~lv~~~-~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw 318 (354)
T 2hjh_A 241 LPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGW 318 (354)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEESCCCCEETGGGHHHHS-CTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhhCCEEEEECcCCCchhHHHHHHHH-hcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCC
Confidence 99988999999999999999999999999999999876 46889999999999864 59999999999999999999999
Q ss_pred cCCCcc
Q 020360 129 RIPPYI 134 (327)
Q Consensus 129 ~IP~~~ 134 (327)
+||.+.
T Consensus 319 ~~p~~~ 324 (354)
T 2hjh_A 319 TIPHKK 324 (354)
T ss_dssp CCCSTT
T ss_pred CCchHH
Confidence 999865
No 9
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=99.93 E-value=2.9e-26 Score=215.55 Aligned_cols=122 Identities=21% Similarity=0.362 Sum_probs=104.2
Q ss_pred CcCCCCCCeecchhh--hhhhc--------------CCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCC
Q 020360 2 EACPSCGSEYFRDFE--VETIG--------------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIAD 65 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~--~~ti~--------------~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~AD 65 (327)
.+|..|++.|..... ...+. .....|+|+.+.|||.|||+||||||++|++.++.|.+++++||
T Consensus 135 ~~C~~C~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aD 214 (273)
T 3riy_A 135 TRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCD 214 (273)
T ss_dssp EEETTTCCEEECCCSSSSGGGTTCCCCSTTCCCCCCCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCS
T ss_pred eEcCCCCCcccccccchhhhhhcccCCcccccccccccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCC
Confidence 479999999864311 00000 11246899311799999999999999999999999999999999
Q ss_pred EEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHH
Q 020360 66 VVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVM 123 (327)
Q Consensus 66 LvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~ 123 (327)
|+|||||||+|+|+++|+..+.+.|+++++||+++|+.|..++++|+|+++++|++|+
T Consensus 215 l~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 215 LCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp EEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred EEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 9999999999999999998888899999999999999999999999999999999986
No 10
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=99.92 E-value=1.3e-25 Score=212.28 Aligned_cols=125 Identities=20% Similarity=0.379 Sum_probs=104.4
Q ss_pred CcCCCCCCeecchhhhhhhcCC--CCCCCCCCCCCCceeeccEEecCCCCChhhHHHH-------------HHHhhhCCE
Q 020360 2 EACPSCGSEYFRDFEVETIGLK--ETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPA-------------EKHCKIADV 66 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k--~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A-------------~~~~~~ADL 66 (327)
.+|..|++.|+.+.....+... ...|+|+ .|||.|||+||||||++|++.+..+ .+++.+|||
T Consensus 137 ~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~--~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~Dl 214 (289)
T 1q1a_A 137 CHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD--VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPL 214 (289)
T ss_dssp EEETTTCCEECHHHHHHHHTCSSCCSCCBCT--TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCE
T ss_pred eEECCCCCCCcHHHHHHHHhhccCCCCccCC--CCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCE
Confidence 4799999999987766555322 2479999 8999999999999999998755444 245789999
Q ss_pred EEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC----CCCCccEEEEccHHHHHHHHHHHhccc
Q 020360 67 VLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP----KDKKASLVIHGFVDKVVAGVMDLLNLR 129 (327)
Q Consensus 67 vLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~----~D~~adl~I~g~~devL~~L~k~Lg~~ 129 (327)
+|||||||+|+|+++|+..+. .|+++|+||+++|. .+..+|++|+|+|+++|++|++.|||+
T Consensus 215 llviGTSl~V~Pa~~l~~~~~-~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~~ 280 (289)
T 1q1a_A 215 VIVVGTSLAVYPFASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 280 (289)
T ss_dssp EEEESCCCCEETTTHHHHHSC-TTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTCH
T ss_pred EEEEccCCChhhHHHHHHHHh-cCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCCH
Confidence 999999999999999998775 68999999999996 245799999999999999999999985
No 11
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=99.92 E-value=3.6e-25 Score=215.94 Aligned_cols=125 Identities=20% Similarity=0.376 Sum_probs=105.7
Q ss_pred CcCCCCCCeecchhhhhhhcCC--CCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHH-------------HhhhCCE
Q 020360 2 EACPSCGSEYFRDFEVETIGLK--ETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEK-------------HCKIADV 66 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k--~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~-------------~~~~ADL 66 (327)
.+|..|++.|+.+.....+... ...|+|+ .|||.|||+||||||++|...+..+.+ ++.+|||
T Consensus 145 ~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp--~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDl 222 (361)
T 1q14_A 145 CHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD--VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPL 222 (361)
T ss_dssp EEETTTCCEECTHHHHHHTTSSSCSCCCBCT--TTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCE
T ss_pred cCcCCCCccCcHHHHHHHHhhcccCCCCCCc--CCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCE
Confidence 4799999999987765554332 2369999 899999999999999999877666655 5679999
Q ss_pred EEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC----CCCCccEEEEccHHHHHHHHHHHhccc
Q 020360 67 VLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP----KDKKASLVIHGFVDKVVAGVMDLLNLR 129 (327)
Q Consensus 67 vLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~----~D~~adl~I~g~~devL~~L~k~Lg~~ 129 (327)
+|||||||+|+|+++|+..+. .|+++|+||+++|. .+..+|++|+|+|+++|++|++.|||+
T Consensus 223 lLviGTSl~V~Paa~l~~~~~-~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~ 288 (361)
T 1q14_A 223 VIVVGTSLAVYPFASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 288 (361)
T ss_dssp EEEESCCCCSTTGGGHHHHSC-TTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCH
T ss_pred EEEECCCCCchhHHHHHHHHh-cCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCCh
Confidence 999999999999999998765 68999999999996 256799999999999999999999986
No 12
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=99.92 E-value=3.6e-25 Score=203.61 Aligned_cols=118 Identities=22% Similarity=0.280 Sum_probs=96.5
Q ss_pred CcCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCc
Q 020360 2 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 81 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~ 81 (327)
.+|..|++.|+.+..+. ....|.|+ .|||.|||+||||||+ |+ .++++.+++++|||+|||||||+|+|+++
T Consensus 114 ~~C~~C~~~~~~~~~~~----~~~~p~c~--~Cgg~lrP~vv~FGE~-p~-~~~~a~~~~~~adl~lviGTSl~V~Pa~~ 185 (235)
T 1s5p_A 114 VRCSQSGQVLDWTGDVT----PEDKCHCC--QFPAPLRPHVVWFGEM-PL-GMDEIYMALSMADIFIAIGTSGHVYPAAG 185 (235)
T ss_dssp EEETTTCCEEECCSCCC----SSCCC---------CEEEEECCTTSC-CS-SHHHHHHHHHHCSEEEEESCCTTEETGGG
T ss_pred EEeCCCCCcccchhhcc----CCCCCCCC--CCCCeecCcEEEeCCC-HH-HHHHHHHHHhcCCEEEEECcCCchhhHHH
Confidence 46999999998765321 12356777 7999999999999999 75 68999999999999999999999999999
Q ss_pred chhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 82 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 82 Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
|+..+++.|+++|+||+++|+.|..+|+.|+|+++++|++|++.|.
T Consensus 186 l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l~ 231 (235)
T 1s5p_A 186 FVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHHH
Confidence 9999988899999999999999999999999999999999999873
No 13
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=99.91 E-value=3.7e-25 Score=210.22 Aligned_cols=122 Identities=19% Similarity=0.310 Sum_probs=105.9
Q ss_pred CcCCCCCCeecchhhhhh---hcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCccccc
Q 020360 2 EACPSCGSEYFRDFEVET---IGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITP 78 (327)
Q Consensus 2 e~C~~Cgk~y~~d~~~~t---i~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~P 78 (327)
.+|..|++.|+.+..+.. ......+|+|+ |||.|||+||||||++|++.++.|.+++++|||+|||||||+|+|
T Consensus 155 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~---Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~P 231 (290)
T 3u31_A 155 AVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP---CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVST 231 (290)
T ss_dssp EEETTTCCEEECCTGGGSTTSSTTTSSSCBCT---TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHH
T ss_pred ceeCCCCCcCChhHhhhcccccccccCCCCCC---CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchh
Confidence 479999999987655421 11224579998 999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhcCCCeEEEEcCCCCCCCC-CccEEEEccHHHHHHHHHHHhc
Q 020360 79 ACNLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 79 Aa~Lp~~a~~~G~~lVIINlqpT~~D~-~adl~I~g~~devL~~L~k~Lg 127 (327)
+++|+..|++.|+++|+||+++|+.|. .+|++|+|+++++++ +++.|.
T Consensus 232 aa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d~~i~g~a~~vl~-~~~~l~ 280 (290)
T 3u31_A 232 ATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSELTK-VANILK 280 (290)
T ss_dssp HHHHHHHHHHTTCCEEEEESSCCTTTTTTCSEEEESCGGGHHH-HHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCCCCccceEEEECCHHHHHH-HHHHHh
Confidence 999999988899999999999999975 689999999999875 555554
No 14
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=99.91 E-value=8e-25 Score=210.48 Aligned_cols=124 Identities=23% Similarity=0.384 Sum_probs=109.3
Q ss_pred CcCCC--CCCeecchhhhhhhcCCCCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccC
Q 020360 2 EACPS--CGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPA 79 (327)
Q Consensus 2 e~C~~--Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PA 79 (327)
.+|.. |++.|+.++..+.+.. ...|+|+ .|||.|||+||||||++|++.++.|.+++++||++|||||||+|+|+
T Consensus 160 ~~C~~~~C~~~~~~~~~~~~i~~-~~~P~C~--~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~ 236 (323)
T 1j8f_A 160 SHCVSASCRHEYPLSWMKEKIFS-EVTPKCE--DCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPF 236 (323)
T ss_dssp EEESCTTTCCEECHHHHHHHHHT-TCCCBCT--TTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHH
T ss_pred eecCCCccCccccHHHHHHhhcc-CCCCCCc--CCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHH
Confidence 46999 9999988876554432 3579999 89999999999999999999899999999999999999999999999
Q ss_pred CcchhhhhcCCCeEEEEcCCCCCCCC--------------------CccEEEEccHHHHHHHHHHHhccc
Q 020360 80 CNLPLKCLRGGGKIVIVNLQKTPKDK--------------------KASLVIHGFVDKVVAGVMDLLNLR 129 (327)
Q Consensus 80 a~Lp~~a~~~G~~lVIINlqpT~~D~--------------------~adl~I~g~~devL~~L~k~Lg~~ 129 (327)
++|+..+.+ ++++++||+++|..+. .+|+.|.|+|+++|++|++.|||+
T Consensus 237 a~l~~~~~~-~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L~~~lgw~ 305 (323)
T 1j8f_A 237 ASLISKAPL-STPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWK 305 (323)
T ss_dssp HHHHTTSCT-TCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHc-CCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHHHHHHHHHHcCCc
Confidence 999988754 4577899999998754 378999999999999999999985
No 15
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=95.02 E-value=0.091 Score=46.57 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=62.6
Q ss_pred CcceeeEEEEeeccCCCCcccceeEEEEecCCccccccccccCCCeEEEEeeecccceeEEEEEeecCCCCCCcceeeee
Q 020360 151 KKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIP 230 (327)
Q Consensus 151 ~~~~~w~l~~~~v~~~~~p~~~ik~v~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~ 230 (327)
...-.|++-+.+.++..-+ .||+.|...+-+.-.----+++.+||.+..+. -+.|+|.|++.|.+..|+-.+.|.|.
T Consensus 30 ~~TH~WtVyVr~~~~edis-~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G--WGeF~i~I~i~F~~~~~ek~i~i~H~ 106 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDIS-YFIKKVVFKLHDTYPNPVRSIEAPPFELTETG--WGEFDINIKVYFVEEANEKVLNFYHR 106 (175)
T ss_dssp TCCEEEEEEEECGGGCCCT-TTEEEEEEECCTTSSSCEEEECSSSEEEEEEE--SSCCEEEEEEEECGGGCCCCEEEEEE
T ss_pred CCcEEEEEEEECCCCCChh-heEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE--EeeEEEEEEEEEeCCCCCccEEEEEE
Confidence 3557899988888776544 69999999764332112236789999998443 47999999999999889999999888
Q ss_pred eccccC
Q 020360 231 FDFKVP 236 (327)
Q Consensus 231 ~~~~~~ 236 (327)
.-++..
T Consensus 107 L~L~~~ 112 (175)
T 3rls_A 107 LRLHPY 112 (175)
T ss_dssp CCCCC-
T ss_pred EEecCC
Confidence 776654
No 16
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=94.70 E-value=0.068 Score=45.83 Aligned_cols=109 Identities=13% Similarity=0.245 Sum_probs=71.9
Q ss_pred cceEEEeeecCCCC-----cc-eeeE--EEEeeccCCCCcccceeEEEEecCCcccccc--ccccCCCeEEEEeeecccc
Q 020360 138 LLQIIVTQSLSSDK-----KF-VNWT--LRITSVHGQTAQLPFIKSVEVSFSDRQKYKE--ASLDKQPFQLKRRTVINET 207 (327)
Q Consensus 138 ~~~i~~~~~~~~~~-----~~-~~w~--l~~~~v~~~~~p~~~ik~v~v~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~ 207 (327)
.++|...|.+..+. -. -+|+ +-+.+.++..-+..||+.|....-+ .|+. -+++.+||.+..+ .=+.
T Consensus 11 tvr~~T~Q~~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~--sF~np~r~v~~pPF~v~e~--GWGe 86 (140)
T 3qrl_A 11 TIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHP--TFANPNRTFTDPPFRIEEQ--GWGG 86 (140)
T ss_dssp EEEEEEEEEECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCT--TSSSCEEEECSTTCCEEEE--ESSC
T ss_pred EEEEEEeeeeCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCC--CCCCCeEEEcCCCcEEEEE--Eeee
Confidence 35666666654322 12 4799 7888888877677799999986532 2332 3678999999843 3489
Q ss_pred eeEEEEEeecCCCCCCcceeeeeeccccCC------CCCcCChHHHHHHHH
Q 020360 208 FDIKLKLNFSDGCGCPCTQINIPFDFKVPP------KCFELDKDDIFQRLR 252 (327)
Q Consensus 208 ~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 252 (327)
|+|.|++.|.+..+ -..|.|..+|+... -.|..-++...++|+
T Consensus 87 F~i~I~i~f~~~~~--~~~i~H~L~f~~~~y~~~h~i~f~np~~~l~~~L~ 135 (140)
T 3qrl_A 87 FPLDISVFLLEKAG--ERKIPHDLNFLQESYEVEHVIQIPLNKPLLTEELA 135 (140)
T ss_dssp CCEEEEEEEGGGTE--EEEEEECCCSSSSEEEEEEEEEEESCSHHHHHHHT
T ss_pred EEEEEEEEEecCCC--cEEEEEEEEeCCCCCcceEEEEECCCCHHHHHHHH
Confidence 99999999987543 35777777777543 123344555555554
No 17
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=94.41 E-value=0.12 Score=51.92 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=50.6
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+.+||++|++|+.+.-......+......+.++|.|+.++...++ ..++.|.|++..+|..|.+.|.
T Consensus 266 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 338 (568)
T 2c31_A 266 RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK 338 (568)
T ss_dssp HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhh
Confidence 3456789999999999986433222211111136789999988876553 4689999999999999988774
No 18
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=93.09 E-value=0.24 Score=49.52 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=49.4
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCC--CCccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+++||++|++|+.+.-......... ..+.++|.|+.++...+ ...++.|.|++.++|..|.+.|.
T Consensus 264 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (564)
T 2q28_A 264 RSFALANADVVMLVGARLNWLLAHGKKGW--AADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELK 334 (564)
T ss_dssp HHHHHHHCSEEEEESCCCSGGGGGGTTTS--CTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HHhHhhcCCEEEEECCccccccccccccc--CCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 34567899999999998853222111111 23568999998887655 35689999999999999988774
No 19
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=92.65 E-value=0.29 Score=49.35 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+.+||++|++|+.+.-.-...+... ..+.++|.|+.++...++ ..++.|.|++..+|..|.+.|.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 342 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKLEAF--ASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE 342 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSGGGT--TTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCccccc--CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 456677899999999998743222222211 235689999999877654 5689999999999999987764
No 20
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=92.42 E-value=0.31 Score=49.26 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+.+||++|++|+.+.-.... +.. ...+.++|.|+.++...++ ..++.|.|++..+|..|.+.|.
T Consensus 264 ~~~~~l~~aDlvl~iG~~~~~~~~~-~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (589)
T 2pgn_A 264 SANDMMAAADFVLVLGSRLSDWGIA-QGY--ITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLP 334 (589)
T ss_dssp HHHHHHHHCSEEEEESCCCCTTTTT-TTT--TCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGG
T ss_pred HHHHHHhhCCEEEEECCCccccccc-ccc--cCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhh
Confidence 3556778899999999988543332 211 1135689999998876654 4689999999999999998875
No 21
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.37 E-value=0.25 Score=49.71 Aligned_cols=68 Identities=13% Similarity=0.023 Sum_probs=50.8
Q ss_pred HHHHhhhCCEEEEEccC-cccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTS-LQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTS-LqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+++||++|++|+. +.-.....+. ...+.++|.|+.++...++ ..++.|.|++..++..|.+.|.
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQ---KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHC---CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEECCCccccccccccC---CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 45667899999999998 6333222221 1146789999999887654 4689999999999999998875
No 22
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=92.15 E-value=0.34 Score=49.14 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=51.5
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhcc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLNL 128 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg~ 128 (327)
.+.+.+.+|||+|++|+.+...+ +.. ....+.++|.|+.++...++ ..++.|.|++..+|..|.+.+..
T Consensus 269 ~~~~~l~~aDlvl~iG~~~~~~~---~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 339 (603)
T 4feg_A 269 PANEALAQADVVLFVGNNYPFAE---VSK-AFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSE 339 (603)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTT---TTT-TTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCEEEEECCCCCccc---ccc-cCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhhc
Confidence 35567789999999999986322 211 11235789999999877653 46899999999999999887753
No 23
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=92.05 E-value=0.35 Score=48.58 Aligned_cols=67 Identities=13% Similarity=0.303 Sum_probs=49.3
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+++||++|++|+...-.....+ . ..+.++|.|+.++...++ ..++.|.|++..++..|.+.|.
T Consensus 268 ~~~~l~~aDlvl~lG~~~~~~~~~~~---~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 268 GDRLLQLADLVICIGYSPVEYEPAMW---N-SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp HHHHHHHCSEEEEESCCGGGSCGGGT---C-CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHhCCEEEEECCCCCcCCcccc---C-CCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 45567889999999995322222222 1 236789999999877654 4689999999999999988774
No 24
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=91.54 E-value=0.28 Score=49.16 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=50.3
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
+.+||++|++|+.+.-.....+-... ..+.++|.||.++...++ ..++.|.|++.++|..|.+.|.
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQLI-PHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATA 334 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCSSS-CTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEECCCCcccccccccccC-CCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhh
Confidence 67899999999988665543332111 125689999999877654 5789999999999999998775
No 25
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=91.32 E-value=0.38 Score=48.09 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=49.6
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+.+||++|++|+.+.... + ...+.++|.|+.++...+. ..++.|.|++..+|..|.+.|.
T Consensus 258 ~~~~~~~~aDlvl~iG~~~~~~~---~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (549)
T 3eya_A 258 SGFHTMMNADTLVLLGTQFPYRA---F----YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE 324 (549)
T ss_dssp HHHHHHHHCSEEEEESCCCCCGG---G----SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred HHHHHHHhCCEEEEECCCCCccc---c----CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 35567789999999999874321 1 1245789999998877653 4689999999999999987764
No 26
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=91.22 E-value=0.34 Score=48.79 Aligned_cols=68 Identities=15% Similarity=0.022 Sum_probs=49.2
Q ss_pred HHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 58 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
...+.+|||+|++|+.+.-.+...+.. ...+.++|.|+.++...+. ..++.|.|++..+|..|.+.+.
T Consensus 284 ~~~~~~aDlvl~~G~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 353 (578)
T 3lq1_A 284 IIDKLTPEVVIRFGSMPVSKPLKNWLE--QLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP 353 (578)
T ss_dssp HHHHTCCSEEEEESSCCSCHHHHHHHH--HCCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred ccccCCCCEEEEeCCcccchhHHHHHh--cCCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence 345678999999999753222222211 1246789999999876653 5789999999999999988764
No 27
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=89.72 E-value=0.42 Score=47.34 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC-CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~-~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++||++|++|+.+.-.....+... ...+.++|.|+.++...++ ..++.|.|++..++..|.+.+.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQY-LKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE 330 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSCS-SCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCCc-CCCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence 456678899999999998866655443211 1235689999988754221 5789999999999999998875
No 28
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=89.11 E-value=0.95 Score=45.70 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=50.5
Q ss_pred HHHHHhhhCCEEEEEccCcccccC-CcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPA-CNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PA-a~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+.+||++|++|+.+..... ... . .+.+++.|+.++...++ ..++.|.|++..++..|.+.|+
T Consensus 262 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~---~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~ 331 (590)
T 1v5e_A 262 PANETILEADTVLFAGSNFPFSEVEGTF--R---NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD 331 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTTTTT--T---TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCEEEEECCCCcchhccccC--C---CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence 456678899999999998854431 101 1 25689999998876654 4689999999999999998775
No 29
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=89.07 E-value=0.47 Score=48.07 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=50.2
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+.+||++|++|+.+.-.....+... ..+.++|.|+.++...++ ..++.|.|++..++..|.+.|.
T Consensus 286 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 357 (616)
T 2pan_A 286 YGNATLLASDMVFGIGNRFANRHTGSVEKY--TEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ 357 (616)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSHHHH--HTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCcccccCccccc--CCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 456677899999999998752222222111 235689999998866554 4578899999999999988764
No 30
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=88.06 E-value=0.73 Score=46.61 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=46.9
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
..++ +|++|++|+.+.-.....+. ....+.++|.|+.++...++ ..++.|.|++..++..|.+.|.
T Consensus 306 ~~~~-~Dlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 373 (604)
T 2x7j_A 306 RKLR-PDVVIRFGPMPVSKPVFLWL--KDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLT 373 (604)
T ss_dssp HHHC-CSEEEEESSCCSCHHHHHHH--HHCTTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSC
T ss_pred hhcC-CCEEEEECCcCccHHHHHHH--hhCCCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhc
Confidence 3444 89999999987322211121 11125689999999887664 4689999999999999988774
No 31
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=87.92 E-value=0.59 Score=46.83 Aligned_cols=65 Identities=15% Similarity=0.034 Sum_probs=46.6
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHH
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGV 122 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L 122 (327)
.+...+.+|||+|++|+.+.-.+...+... ....++|.|+.++...++ ..++.|.|++..++..|
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l 337 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQAS--CEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELH 337 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHHHH--CCCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHS
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHHhc--CCCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhc
Confidence 355677899999999999853333333221 123489999998877654 46899999999998875
No 32
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=85.17 E-value=0.78 Score=43.65 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=46.8
Q ss_pred CCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 64 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 64 ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT-~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
|+|.|.+|=|..+.=.+.+ +.-..||-||.+|. |.-..+|+-|-||.-+++|+|.+.|.
T Consensus 260 ~~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 260 CKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp CSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred cceEEEEeccCcHHHHhhc-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence 3999999999988744444 22346888999876 55678999999999999999999873
No 33
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=83.85 E-value=1.1 Score=46.38 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=49.0
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcch---hhhh----cCCCeEEEEcCCCCCCCC--CccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLP---LKCL----RGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp---~~a~----~~G~~lVIINlqpT~~D~--~adl~I~g~~devL~~L~k~Lg 127 (327)
+...+++|||+|++|+.+.-.-...+. ..++ .....+|.|+.++...+. ..++.|.|++..+|..|.+.|.
T Consensus 350 ~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~ 429 (677)
T 1t9b_A 350 ANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF 429 (677)
T ss_dssp HHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred HHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence 445678999999999988533222221 1121 122348888888776554 4689999999999999987764
No 34
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=81.66 E-value=2 Score=40.65 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=48.5
Q ss_pred hCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC-CCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 63 IADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 63 ~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT-~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
..+|.|.+|=|.++.=.+.+ +.-..||-||.+|. |.-..+|+-|-||.-+++|+|.+.|.
T Consensus 253 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 253 APELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred CcceEEEecccCcHHHHhhc-----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 34899999999998855555 12236888999876 55678999999999999999999884
No 35
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=80.64 E-value=1.9 Score=42.98 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=46.4
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+.+||++|++|+.+.-.+...+... ..+.++|.||.++...+.. ....-++..++..|.+.|.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l~ 338 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSDFNTGSFSYS--YKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLTTIA 338 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCTTTTTTTCCC--CCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCccccccccccC--CCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHHhhc
Confidence 355677899999999998865555444221 1256899999988765543 3333456888888887664
No 36
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=80.38 E-value=2.1 Score=40.47 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=47.2
Q ss_pred hCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCC-CCCCCccEEEEccHHHHHHHHHHHh
Q 020360 63 IADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 63 ~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT-~~D~~adl~I~g~~devL~~L~k~L 126 (327)
..+|.|.+|=|..+.=.+.+ +.-..+|-||.+|. |.-..+|+-|-||.-+++|+|.+.|
T Consensus 248 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 248 APELYVAVGISGAIQHLAGM-----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CCceEEEEeccCcHHHHhhh-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 34899999999998855555 22236888999876 5567899999999999999998864
No 37
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=79.23 E-value=2.4 Score=42.02 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=46.3
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+.+||++|++|+.+...+...+... ..+.++|.|+.++...++. ....-....++..|.+ |+
T Consensus 269 ~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~-l~ 335 (552)
T 1ovm_A 269 AVKEAIEGADTVLCVGTRFTDTLTAGFTHQ--LTPAQTIEVQPHAARVGDV--WFTGIPMNQAIETLVE-LC 335 (552)
T ss_dssp HHHHHHHTSSEEEEESCCCCTTTTTTTCCC--CCTTTEEEECSSEEEETTE--EEESCCHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCEEEEECCCCCcccccccccC--CCCCeEEEEeCChheeCCc--ccCCccHHHHHHHHHh-Cc
Confidence 456678899999999999876665554321 1256789999988765542 2233456888888887 64
No 38
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=76.79 E-value=2.8 Score=41.80 Aligned_cols=67 Identities=7% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
+.+.+.+||++|++|+.+.-.....+... ..+.++|.|+.++...+. .....-.+.+++..|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDYSTVGWSAW--PKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKAP 336 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTTTTTTTTSC--CCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccccc--CCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhcc
Confidence 45567899999999998865554444221 135678999998876653 23444457888888887764
No 39
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=76.30 E-value=3 Score=41.69 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=45.3
Q ss_pred HHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 57 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 57 A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
+.+.+.+||++|++|+.+.-.....+... ..+.++|.|+.++...+. .....-++.++|..|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 270 VEKTMKEADAVIALAPVFNDYSTTGWTDI--PDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKVS 336 (568)
T ss_dssp HHHHHHHCSEEEEESCCCBTTTTTTTTCC--CCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccccC--CCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhcc
Confidence 44567889999999998754444333211 135678999998876553 34444557888888887764
No 40
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=74.88 E-value=1.5 Score=45.26 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=38.0
Q ss_pred hhhCCEEEEEccCcccccC---CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 61 CKIADVVLCLGTSLQITPA---CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PA---a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
+++||++|++|+.....-. ......++++|+++|+|++..|.....+|++|.
T Consensus 158 ~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ 212 (727)
T 2e7z_A 158 FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP 212 (727)
T ss_dssp TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence 5789999999987643311 112234567899999999998887777888874
No 41
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=74.57 E-value=2.4 Score=44.09 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=39.6
Q ss_pred hhhCCEEEEEccCcccccC---CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEc
Q 020360 61 CKIADVVLCLGTSLQITPA---CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 113 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PA---a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g 113 (327)
+++||++|++|+.....-. ......++++|+++|+|++..|.....+|++|.=
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~i 252 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPI 252 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECC
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCC
Confidence 5789999999987543321 1112346678999999999999888889988754
No 42
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=71.31 E-value=6.5 Score=34.76 Aligned_cols=85 Identities=18% Similarity=0.332 Sum_probs=56.5
Q ss_pred cEEecCCCCChh---hHHHHHHHhhhCCEEEEEccCcccccCCcc-hh---------hhhcCCCeEEEEcCCCCC-C---
Q 020360 41 TVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACNL-PL---------KCLRGGGKIVIVNLQKTP-K--- 103 (327)
Q Consensus 41 dVV~FGE~LPe~---~l~~A~~~~~~ADLvLVLGTSLqV~PAa~L-p~---------~a~~~G~~lVIINlqpT~-~--- 103 (327)
+|++=+-.+|.+ .++.+-....++|++||+|..=.|-|++.- |. .+-+ -..+++++..-.. +
T Consensus 73 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAgv 151 (180)
T 1pno_A 73 NVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEK-AGTVLFIKRSMASGYAGV 151 (180)
T ss_dssp HHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCC
T ss_pred eEEEEeeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhh-CCEEEEEECCCCCCcCCC
Confidence 566556667765 456666778899999999999999998863 22 1111 1245555544222 1
Q ss_pred -----CCCccEEEEccHHHHHHHHHHHh
Q 020360 104 -----DKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 104 -----D~~adl~I~g~~devL~~L~k~L 126 (327)
-...+.-+.||+.+.+.+|.+.|
T Consensus 152 ~NpLF~~~nt~MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 152 ENELFFRNNTMMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp CCGGGTSTTEEEEESCHHHHHHHHHHHH
T ss_pred cCcceecCCceEEeccHHHHHHHHHHHh
Confidence 12235668999999999999876
No 43
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=68.24 E-value=2.4 Score=42.38 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+.+.+++||++|++|+.+.-.....+... ..+.++|.|+.++...++. ....-++..++..|.+.++
T Consensus 288 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l~ 355 (570)
T 2vbf_A 288 SLKNFVESADFILMLGVKLTDSSTGAFTHH--LDENKMISLNIDEGIIFNK--VVEDFDFRAVVSSLSELKG 355 (570)
T ss_dssp HHHHHHHHCSEEEEESCCCCGGGTTTTCCC--CCGGGEEEECSSCEEETTE--EECSSCHHHHHHTGGGCCS
T ss_pred HHHHHHHhCCEEEEECCCcccccccccccC--CCCCeEEEEeCCHHHhCCe--eecCCCHHHHHHHHHHhcc
Confidence 355678899999999998854444433211 1245789999988765542 3334467777777766554
No 44
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=66.40 E-value=6.6 Score=35.37 Aligned_cols=87 Identities=17% Similarity=0.323 Sum_probs=57.7
Q ss_pred eccEEecCCCCChh---hHHHHHHHhhhCCEEEEEccCcccccCCcc-hh---------hhhcCCCeEEEEcCCCCC-C-
Q 020360 39 RDTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACNL-PL---------KCLRGGGKIVIVNLQKTP-K- 103 (327)
Q Consensus 39 RPdVV~FGE~LPe~---~l~~A~~~~~~ADLvLVLGTSLqV~PAa~L-p~---------~a~~~G~~lVIINlqpT~-~- 103 (327)
+-+|++=+-.+|.+ .++.+-....++|++||||..=.|-|++.- |. .+-+ -..+++++..-.. +
T Consensus 94 hMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyA 172 (203)
T 2fsv_C 94 HMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWK-AGTVLFIKRSMASGYA 172 (203)
T ss_dssp HHHHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTT
T ss_pred CccEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeecccc-CCEEEEEECCCCCCcC
Confidence 34666666667765 455666677899999999999999998863 22 1111 1245555544222 1
Q ss_pred -------CCCccEEEEccHHHHHHHHHHHh
Q 020360 104 -------DKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 104 -------D~~adl~I~g~~devL~~L~k~L 126 (327)
-...+.-+.||+.+.+.+|.+.|
T Consensus 173 gv~NpLF~~~nt~MlfGDAK~~~~~l~~~l 202 (203)
T 2fsv_C 173 GVENELFFRNNTMMLFGDAKKMTEQIVQAM 202 (203)
T ss_dssp CCCCGGGGSTTEEEEESCHHHHHHHHHHHC
T ss_pred CCcCcceecCCceEEeccHHHHHHHHHHHh
Confidence 12235668999999999998876
No 45
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=62.49 E-value=7.3 Score=35.20 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=58.7
Q ss_pred eccEEecCCCCChh---hHHHHHHHhhhCCEEEEEccCcccccCCcc-hh---------hhhcCCCeEEEEcCCCCC-C-
Q 020360 39 RDTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACNL-PL---------KCLRGGGKIVIVNLQKTP-K- 103 (327)
Q Consensus 39 RPdVV~FGE~LPe~---~l~~A~~~~~~ADLvLVLGTSLqV~PAa~L-p~---------~a~~~G~~lVIINlqpT~-~- 103 (327)
+-+|++=+-.+|.+ .++.+-....++|++||||..=.|-|++.- |. .+-+ -..+++++..-.. +
T Consensus 93 hMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyA 171 (207)
T 1djl_A 93 QLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYA 171 (207)
T ss_dssp HHHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTT
T ss_pred CCcEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeeccee-cCEEEEEECCCCCCcC
Confidence 34666666667765 456666788899999999999989888753 21 1111 1245555544222 2
Q ss_pred -------CCCccEEEEccHHHHHHHHHHHhc
Q 020360 104 -------DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 104 -------D~~adl~I~g~~devL~~L~k~Lg 127 (327)
-...+.-+.||+.+.+.+|.+.|.
T Consensus 172 gv~NpLF~~~nt~MlfGDAK~~~~~l~~~l~ 202 (207)
T 1djl_A 172 AVDNPIFYKPNTAMLLGDAKKTCDALQAKVR 202 (207)
T ss_dssp CCCCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred CCcCcceecCCceEEeccHHHHHHHHHHHHH
Confidence 122346689999999999999886
No 46
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=61.06 E-value=6.6 Score=42.22 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=39.0
Q ss_pred HhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 60 HCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
.+++||++|++|+..... |. ......++++|+++|+|++..|.....||++|.
T Consensus 181 D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~ 235 (977)
T 1h0h_A 181 DLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAP 235 (977)
T ss_dssp GGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEEC
T ss_pred HHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeec
Confidence 367899999999875432 21 111234667899999999999988788998764
No 47
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=59.14 E-value=3.2 Score=43.16 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=37.9
Q ss_pred HhhhCCEEEEEccCccc-ccCC---------cchhhhhcCCCeEEEEcCCCCCCCCCc-cEEEE
Q 020360 60 HCKIADVVLCLGTSLQI-TPAC---------NLPLKCLRGGGKIVIVNLQKTPKDKKA-SLVIH 112 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV-~PAa---------~Lp~~a~~~G~~lVIINlqpT~~D~~a-dl~I~ 112 (327)
.+++||++|++|+.... .|.. .....++++|+++|+|++..|.....+ |++|.
T Consensus 174 d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~ 237 (780)
T 1eu1_A 174 VVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVS 237 (780)
T ss_dssp HHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEEC
T ss_pred HHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEee
Confidence 46799999999987643 2321 123346678999999999988765555 87775
No 48
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=59.10 E-value=13 Score=37.21 Aligned_cols=68 Identities=13% Similarity=0.000 Sum_probs=41.4
Q ss_pred HHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 56 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 56 ~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
.+...+++||++|++|+.+.-.+...+.... ...++|.|+.++...+.. ....-....++..|.+.+.
T Consensus 282 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~i~~d~~~~~~~--~~~~~~~~~~l~~L~~~l~ 349 (565)
T 2nxw_A 282 EITRLVEESDGLFLLGAILSDTNFAVSQRKI--DLRKTIHAFDRAVTLGYH--TYADIPLAGLVDALLERLP 349 (565)
T ss_dssp HHHHHHHTCSEEEEESCCBCSSTTSBCTTTS--CGGGEEEEETTEEEETTE--EEESCCHHHHHHHHHHTSC
T ss_pred HHHHHHHhCCEEEEECCCccccccccccccC--CCCcEEEEeCCceeeCCc--ccCCccHHHHHHHHHHhcc
Confidence 3456678899999999987655554432211 123688888776554332 2233345667777776554
No 49
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=58.63 E-value=5.8 Score=42.61 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=39.0
Q ss_pred hhhCCEEEEEccCcccc--cCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 61 CKIADVVLCLGTSLQIT--PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~--PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
+.+||++|++|+..... +.......++++|+++|.|++..|.....+|++|.
T Consensus 244 ~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~ 297 (976)
T 2ivf_A 244 LLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVP 297 (976)
T ss_dssp GGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEEC
T ss_pred HhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEec
Confidence 56899999999875332 22233345677899999999999887788998874
No 50
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=55.27 E-value=7.2 Score=34.60 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=56.3
Q ss_pred cEEecCCCCChh---hHHHHHHHhhhCCEEEEEccCcccccCCcc-hh---------hhhcCCCeEEEEcCCCCC-C---
Q 020360 41 TVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACNL-PL---------KCLRGGGKIVIVNLQKTP-K--- 103 (327)
Q Consensus 41 dVV~FGE~LPe~---~l~~A~~~~~~ADLvLVLGTSLqV~PAa~L-p~---------~a~~~G~~lVIINlqpT~-~--- 103 (327)
+|++=+-.+|.+ .++.+-....++|++||+|..=.|-|++.- |. .+-+. ..+++++..-.. +
T Consensus 72 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kA-k~ViV~KRsm~~GyAgv 150 (184)
T 1d4o_A 72 NVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKS-KQVIVMKRSLGVGYAAV 150 (184)
T ss_dssp HHHHHHHTCCGGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGS-SCEEEEESSSCCCTTCC
T ss_pred eEEEEEecCCHHHHHhHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhhC-CEEEEEECCCCCCcCCC
Confidence 455555556654 456666778899999999999999888753 22 11111 245555544222 1
Q ss_pred -----CCCccEEEEccHHHHHHHHHHHhc
Q 020360 104 -----DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 104 -----D~~adl~I~g~~devL~~L~k~Lg 127 (327)
-...+.-+.||+.+.+.+|.+.|.
T Consensus 151 ~NpLF~~~nt~MlfGDAK~~~~~l~~~l~ 179 (184)
T 1d4o_A 151 DNPIFYKPNTAMLLGDAKKTCDALQAKVR 179 (184)
T ss_dssp CCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred cCcceecCCceEEeccHHHHHHHHHHHHH
Confidence 122346689999999999999886
No 51
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=54.21 E-value=4.4 Score=41.66 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=38.5
Q ss_pred HhhhCCEEEEEccCcccc-cC-CcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEc
Q 020360 60 HCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 113 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g 113 (327)
.+++||++|++|+..... |. ......++++|+++|+|++..|.....+|++|.=
T Consensus 163 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~i 218 (715)
T 2iv2_X 163 EIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIAL 218 (715)
T ss_dssp GGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECC
T ss_pred HHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEecc
Confidence 457899999999865332 11 1112345678999999999998877778887753
No 52
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=54.02 E-value=3.8 Score=43.29 Aligned_cols=52 Identities=10% Similarity=0.012 Sum_probs=36.5
Q ss_pred HhhhCCEEEEEccCcccccCC-------cchhhhhcCCCeEEEEcCCCCCCCCC-ccEEE
Q 020360 60 HCKIADVVLCLGTSLQITPAC-------NLPLKCLRGGGKIVIVNLQKTPKDKK-ASLVI 111 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa-------~Lp~~a~~~G~~lVIINlqpT~~D~~-adl~I 111 (327)
.+.+||++|++|+...-.|.. .+...++++|+++|+|++..|..... +|++|
T Consensus 205 ~~~~ad~il~~G~Np~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l 264 (875)
T 1ti6_A 205 GLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWF 264 (875)
T ss_dssp HHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEE
T ss_pred HHhcCCEEEEECCChhhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEe
Confidence 367999999999987333432 11122677899999999998875444 57765
No 53
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=53.97 E-value=13 Score=29.32 Aligned_cols=54 Identities=26% Similarity=0.471 Sum_probs=37.1
Q ss_pred CCcCCCCCCeecchhhhhhhc----------CC--------CCCCCCCCCCCCceeeccEEecCCCCChhhHHHHHHHhh
Q 020360 1 MEACPSCGSEYFRDFEVETIG----------LK--------ETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCK 62 (327)
Q Consensus 1 ~e~C~~Cgk~y~~d~~~~ti~----------~k--------~t~P~C~~~~CgG~LRPdVV~FGE~LPe~~l~~A~~~~~ 62 (327)
|..|+-||...++...++.+- ++ .-.-+|| .||.- |+|-.||.+.-+...+.+.
T Consensus 8 ~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP--~CgEE------FyG~~Lp~~EaeKVFELLN 79 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP--VCGEE------FYGKTLPRREAEKVFELLN 79 (95)
T ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT--TTCCE------EETTSSCTTTHHHHHHHHH
T ss_pred cccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC--CccHH------HhcccCChHHHHHHHHHHH
Confidence 578999999988776554321 10 1135899 79874 7999999876666666654
No 54
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=53.86 E-value=6.1 Score=42.71 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=39.0
Q ss_pred HhhhCCEEEEEccCcccc-cC-Ccchhhhh-cCCCeEEEEcCCCCCCCCCccEEEEc
Q 020360 60 HCKIADVVLCLGTSLQIT-PA-CNLPLKCL-RGGGKIVIVNLQKTPKDKKASLVIHG 113 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~-~~G~~lVIINlqpT~~D~~adl~I~g 113 (327)
.+++||++|++|+..... |. ......++ ++|+++|+|++..|.....+|++|.=
T Consensus 219 D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~i 275 (1015)
T 1kqf_A 219 DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPI 275 (1015)
T ss_dssp GGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEECC
T ss_pred HHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeecc
Confidence 467899999999876432 21 11223466 78999999999988776788887743
No 55
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=52.43 E-value=5.8 Score=40.68 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=38.3
Q ss_pred HhhhCCEEEEEccCcccc-cC-CcchhhhhcC--CCeEEEEcCCCCCCCCCccEEEEcc
Q 020360 60 HCKIADVVLCLGTSLQIT-PA-CNLPLKCLRG--GGKIVIVNLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~-PA-a~Lp~~a~~~--G~~lVIINlqpT~~D~~adl~I~g~ 114 (327)
.+++||++|++|+..... |. ......++++ |+++|+|++..|.....+|++|.=.
T Consensus 163 d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~ir 221 (723)
T 2nap_A 163 DIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFR 221 (723)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCC
T ss_pred hHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecC
Confidence 357899999999875332 11 0111234555 9999999999998778889887543
No 56
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=52.31 E-value=4.8 Score=44.97 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=38.8
Q ss_pred HhhhCCEEEEEccCcccc--cCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 60 HCKIADVVLCLGTSLQIT--PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~--PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
.+.+||++|++|+..... |.......++++|+++|.|++..|.....+|++|.
T Consensus 243 D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~ 297 (1247)
T 1q16_A 243 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLA 297 (1247)
T ss_dssp GGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEEC
T ss_pred HHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEe
Confidence 356899999999875222 23333445677899999999998876677888764
No 57
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=50.39 E-value=17 Score=31.38 Aligned_cols=56 Identities=9% Similarity=-0.065 Sum_probs=43.4
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCc---cEEEEccH
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKA---SLVIHGFV 115 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~a---dl~I~g~~ 115 (327)
.+..-|++|++-.|....-.......+++.|+++|.| +....++.+.+ |+.|.-+.
T Consensus 111 ~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~ 170 (201)
T 3trj_A 111 LGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPS 170 (201)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESC
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCC
Confidence 4677899999999998777777777888999998866 55566667777 87775443
No 58
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=50.22 E-value=6.6 Score=31.71 Aligned_cols=24 Identities=25% Similarity=0.649 Sum_probs=18.3
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCC-CCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSR-RCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P-~C~~~~CgG~ 37 (327)
+|..||+.|..+. ... .|| .||+.
T Consensus 75 ~C~~CG~~~e~~~---------~~~~~CP--~Cgs~ 99 (119)
T 2kdx_A 75 ECKDCSHVFKPNA---------LDYGVCE--KCHSK 99 (119)
T ss_dssp ECSSSSCEECSCC---------STTCCCS--SSSSC
T ss_pred EcCCCCCEEeCCC---------CCCCcCc--cccCC
Confidence 6999999997642 235 799 89976
No 59
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=50.15 E-value=13 Score=39.05 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=23.4
Q ss_pred cCCCeEEEEcCCCCCCCCCccEEEEccH
Q 020360 88 RGGGKIVIVNLQKTPKDKKASLVIHGFV 115 (327)
Q Consensus 88 ~~G~~lVIINlqpT~~D~~adl~I~g~~ 115 (327)
++|+++++|++..|.....+|+++.-..
T Consensus 443 ~~g~klividPr~t~ta~~Ad~~l~i~P 470 (783)
T 3i9v_3 443 RRTDKMALFAPYRAPLMKWAAIHEVHRP 470 (783)
T ss_dssp CCTTSEEEEESSCCGGGTTCSEEEECCS
T ss_pred cCCCEEEEEeCCcchhhHhhcceEecCC
Confidence 5789999999999998889998875433
No 60
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=49.69 E-value=14 Score=31.76 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=43.1
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEccH
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 115 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~~ 115 (327)
..+..-|++|++-.|....-.......|++.|+++|.| |....++...+|+.|.-++
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 45677899999999887766666667788889888755 5555677788888876554
No 61
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=49.35 E-value=6.4 Score=34.94 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=46.4
Q ss_pred HHHHHHHhhhCCEEEEEccCcccccCCcc-hhh--------hhcCCCeEEEEcCCCC-CC--------CCCccEEEEccH
Q 020360 54 MNPAEKHCKIADVVLCLGTSLQITPACNL-PLK--------CLRGGGKIVIVNLQKT-PK--------DKKASLVIHGFV 115 (327)
Q Consensus 54 l~~A~~~~~~ADLvLVLGTSLqV~PAa~L-p~~--------a~~~G~~lVIINlqpT-~~--------D~~adl~I~g~~ 115 (327)
++.+-....++|++||+|..=.|-|++.- |.- -.-.-..+++++..-. .+ -...+.-+.||+
T Consensus 96 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDA 175 (186)
T 2bru_C 96 MDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDA 175 (186)
T ss_dssp SCCCHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSSSEEEECSCH
T ss_pred HHHHhcccccCCEEEEeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccH
Confidence 34555677899999999999999998763 221 0111124444544322 11 122356689999
Q ss_pred HHHHHHHHHHh
Q 020360 116 DKVVAGVMDLL 126 (327)
Q Consensus 116 devL~~L~k~L 126 (327)
.+.+.+|.+.|
T Consensus 176 K~~~~~l~~~l 186 (186)
T 2bru_C 176 KASVDAILKAL 186 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 62
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=48.94 E-value=9.1 Score=31.77 Aligned_cols=57 Identities=11% Similarity=-0.143 Sum_probs=42.1
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEccH
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 115 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~~ 115 (327)
..+..-|++|++-.|..-.-.......+++.|+++|.| |....++...+|+.|.-+.
T Consensus 106 ~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~ 163 (188)
T 1tk9_A 106 ALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPS 163 (188)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESC
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCC
Confidence 34677899999998887766667777788999988866 4445566667787775543
No 63
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=48.86 E-value=6 Score=41.36 Aligned_cols=51 Identities=6% Similarity=0.032 Sum_probs=36.7
Q ss_pred hhhCCEEEEEccCcccc-cC---------Ccchhhhhc---CCC-eEEEEcCCCCCCCCCc-cEEE
Q 020360 61 CKIADVVLCLGTSLQIT-PA---------CNLPLKCLR---GGG-KIVIVNLQKTPKDKKA-SLVI 111 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~-PA---------a~Lp~~a~~---~G~-~lVIINlqpT~~D~~a-dl~I 111 (327)
+++||++|++|+..... |. ......+++ +|+ ++|+|++..|.....+ |++|
T Consensus 208 ~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l 273 (829)
T 1tmo_A 208 LEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQL 273 (829)
T ss_dssp HHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEE
T ss_pred HhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEe
Confidence 67999999999876432 21 122234556 799 9999999988866667 7776
No 64
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=46.80 E-value=9.6 Score=26.93 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=18.7
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCC
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCG 35 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~Cg 35 (327)
.|..||++|..+... . -..-+|| .||
T Consensus 5 ~C~rCg~~fs~~el~-~----lP~IrCp--yCG 30 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLK-V----LPGVRCP--YCG 30 (48)
T ss_dssp CCCCTTTTCCCCCSC-C----CSSSCCT--TTC
T ss_pred EeeccCCCccHHHHh-h----CCCcccC--ccC
Confidence 699999999877531 1 1346898 798
No 65
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=45.94 E-value=8.7 Score=32.19 Aligned_cols=58 Identities=12% Similarity=-0.060 Sum_probs=42.2
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEccHH
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 116 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~~d 116 (327)
..+..-|++|++-.|....-.......++++|+++|.| |....++...+|+.|.-+++
T Consensus 112 ~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 112 ALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 34677899999988887766666677788899988866 44455666677887765443
No 66
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=44.76 E-value=13 Score=31.25 Aligned_cols=57 Identities=12% Similarity=-0.009 Sum_probs=42.2
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCC---ccEEEEccH
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKK---ASLVIHGFV 115 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~---adl~I~g~~ 115 (327)
..+..-|++|++-.|....-.......|+++|+++|.| |...++..+. +|+.|.-+.
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~ 165 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPS 165 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSC
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCC
Confidence 45677899999999988777777777888999988866 4444444455 787776543
No 67
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=44.56 E-value=8.4 Score=32.23 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=10.9
Q ss_pred cCCCCCCeecchh
Q 020360 3 ACPSCGSEYFRDF 15 (327)
Q Consensus 3 ~C~~Cgk~y~~d~ 15 (327)
+|..||+.|..+.
T Consensus 72 ~C~~CG~~~~~~~ 84 (139)
T 3a43_A 72 KCRNCNYEWKLKE 84 (139)
T ss_dssp EETTTCCEEEGGG
T ss_pred ECCCCCCEEeccc
Confidence 6999999997654
No 68
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=43.95 E-value=11 Score=31.76 Aligned_cols=63 Identities=11% Similarity=0.037 Sum_probs=34.5
Q ss_pred HHhhhCCEEEEEccCc--ccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEc-cHHHHHHHHHHHhc
Q 020360 59 KHCKIADVVLCLGTSL--QITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG-FVDKVVAGVMDLLN 127 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSL--qV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g-~~devL~~L~k~Lg 127 (327)
+.+++|||+|++|+.+ .-.....+.... . .++|.|+..-.+ + ....+.+ ...+++..|.+.+.
T Consensus 103 ~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~--~-~~iI~i~~~~~~-~--~~~~~~~l~~~~~l~~L~~~~~ 168 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKKFYINQVLSAAKNFS--N-LKTIAIERGYIQ-N--ATMSFGNLSKADHYAALDELIN 168 (170)
T ss_dssp SSSCCCSEEEEESCCHHHHHHHHHHHHHHC--C-CCEEECSSSCCT-T--SSEECCCCCHHHHHHHHHHHHH
T ss_pred HHhhcCCEEEEECCccCccccccccccccC--C-CeEEEECCCccc-c--hhhhhccCCHHHHHHHHHHHHh
Confidence 4567899999999987 433222221111 2 567755543222 1 1222222 35778887777653
No 69
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=43.48 E-value=9.6 Score=31.68 Aligned_cols=75 Identities=8% Similarity=0.041 Sum_probs=48.1
Q ss_pred eeccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEcc
Q 020360 38 LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 38 LRPdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~ 114 (327)
+...+..+.+. ...+......+..-|++|++..|....-.......++++|++++.| |....++.+.+|+.|.-.
T Consensus 64 ~g~~~~~~~~~--~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 139 (187)
T 3sho_A 64 LGIRTTVLTEG--GSTLTITLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAA 139 (187)
T ss_dssp TTCCEEEECCC--THHHHHHHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECC
T ss_pred cCCCEEEecCC--chhHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEec
Confidence 34455555422 1223333456677899999988887766666677788899988876 334455555677766543
No 70
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=42.63 E-value=12 Score=36.22 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=48.5
Q ss_pred HHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCC----C--CCccEEEEccHHHHHHHHHHHhc
Q 020360 58 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK----D--KKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 58 ~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~----D--~~adl~I~g~~devL~~L~k~Lg 127 (327)
.++++.||++|+|.|-|.-.-.+++.. ...+++.|..+|..- | .....-|-.++...++.|.+.|.
T Consensus 268 r~~~~~a~~vimlaTmLHSIAtGNm~P----s~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 268 RTTVMDKKMVIMLSTLLHSVATGNLMP----SYIKTVCVDIQPSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELE 339 (345)
T ss_dssp HHHHTTCSEEEEESCHHHHHHHHTTCC----TTSEEEEEESCHHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHH
T ss_pred HHHhccCCchHHHHHHHHHHHhcccCc----ccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHH
Confidence 346678999999999998777777732 334677777666432 2 23446788899999999999885
No 71
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=41.84 E-value=14 Score=27.82 Aligned_cols=24 Identities=29% Similarity=0.721 Sum_probs=17.8
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 36 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG 36 (327)
.|..||.++.... ....+|+ .||.
T Consensus 30 ~C~~CG~~~e~~~--------~d~irCp--~CG~ 53 (70)
T 1twf_L 30 ICAECSSKLSLSR--------TDAVRCK--DCGH 53 (70)
T ss_dssp ECSSSCCEECCCT--------TSTTCCS--SSCC
T ss_pred ECCCCCCcceeCC--------CCCccCC--CCCc
Confidence 5999999986551 1346899 8997
No 72
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=37.86 E-value=86 Score=28.41 Aligned_cols=79 Identities=11% Similarity=0.021 Sum_probs=51.4
Q ss_pred EEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC--CCCCcc-----------
Q 020360 42 VLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP--KDKKAS----------- 108 (327)
Q Consensus 42 VV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~--~D~~ad----------- 108 (327)
|++|...++.+. ..+.+..||++|. +|. ..++..-+..|...|.|+|.-|....+ ......
T Consensus 255 vv~~~g~~~~~~---~~~~~~~adv~v~--pS~-~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~ 328 (413)
T 3oy2_A 255 IMINRTVLTDER---VDMMYNACDVIVN--CSS-GEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISV 328 (413)
T ss_dssp EEEECSCCCHHH---HHHHHHHCSEEEE--CCS-CCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEEC
T ss_pred eeeccCcCCHHH---HHHHHHhCCEEEe--CCC-cCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCccccccccccccc
Confidence 788888888643 4557789998887 554 344444456778899999987654311 111111
Q ss_pred --------EEEEccHHHHHHHHHHHhc
Q 020360 109 --------LVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 109 --------l~I~g~~devL~~L~k~Lg 127 (327)
++-.++.+++...| +.+.
T Consensus 329 ~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 329 DDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp TTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred ccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 55567888887777 6664
No 73
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=37.49 E-value=20 Score=37.71 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=36.8
Q ss_pred HhhhCCEEEEEccCcccc-cCCc-chhhhh--cCCCeEEEEcCCCCCCCCCccEEEE
Q 020360 60 HCKIADVVLCLGTSLQIT-PACN-LPLKCL--RGGGKIVIVNLQKTPKDKKASLVIH 112 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~-PAa~-Lp~~a~--~~G~~lVIINlqpT~~D~~adl~I~ 112 (327)
.+.+||++|++|+..... |... ....++ +.|+++|+|++..|.....||++|.
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~ 231 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGII 231 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEE
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEec
Confidence 467899999999875332 2110 111222 3799999999999988788888764
No 74
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=36.98 E-value=13 Score=31.00 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=35.1
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEE
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVI 111 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I 111 (327)
.+..-|++|++-.|....-.......++++|+++|.| |....++...+|+.|
T Consensus 76 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l 128 (186)
T 1m3s_A 76 PLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLII 128 (186)
T ss_dssp CCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEE
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEE
Confidence 3456799999988887666666666788889988876 333344444455544
No 75
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=36.52 E-value=14 Score=31.13 Aligned_cols=57 Identities=12% Similarity=-0.042 Sum_probs=42.3
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCC---ccEEEEccH
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKK---ASLVIHGFV 115 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~---adl~I~g~~ 115 (327)
..+..-|++|++-.|..-.-.......|+++|+++|.| |....++... +|+.|.-+.
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~ 169 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPS 169 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSC
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCC
Confidence 45677899999999888777777777888999998876 4344455566 888776544
No 76
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=36.28 E-value=51 Score=31.18 Aligned_cols=86 Identities=10% Similarity=-0.031 Sum_probs=54.2
Q ss_pred ccEEecCCCCCh---hhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCC----CCCCCCCccEEEE
Q 020360 40 DTVLDWEDALPP---KEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ----KTPKDKKASLVIH 112 (327)
Q Consensus 40 PdVV~FGE~LPe---~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlq----pT~~D~~adl~I~ 112 (327)
|++..|+. +-. ...+.+.+.++++|++||+|..- -.-...|...|.+.|.+.+.|.-. +.-+.....+-|-
T Consensus 184 p~~~~~~t-IC~AT~~RQ~av~~la~~~D~miVVGg~n-SSNT~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~~VGIT 261 (297)
T 3dnf_A 184 KEVKVINT-ICNATSLRQESVKKLAPEVDVMIIIGGKN-SGNTRRLYYISKELNPNTYHIETAEELQPEWFRGVKRVGIS 261 (297)
T ss_dssp SEEEEECC-CCSHHHHHHHHHHHHGGGSSEEEEESCTT-CHHHHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCSEEEEE
T ss_pred CCCCCCCC-ccHHHHHHHHHHHHHHhhCCEEEEECCCC-CchhHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCCEEEEe
Confidence 56665543 432 34566777888999999999742 234456666777778888888532 2223344445555
Q ss_pred cc---HHHHHHHHHHHhc
Q 020360 113 GF---VDKVVAGVMDLLN 127 (327)
Q Consensus 113 g~---~devL~~L~k~Lg 127 (327)
+. .+.++.++.+.|.
T Consensus 262 AGASTP~~li~eVi~~l~ 279 (297)
T 3dnf_A 262 AGASTPDWIIEQVKSRIQ 279 (297)
T ss_dssp ECTTCCHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHH
Confidence 43 4677888887774
No 77
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.03 E-value=15 Score=29.83 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=18.6
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCc--eeecc
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA--KLRDT 41 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG--~LRPd 41 (327)
+|.+||..| .+.. ....+|| .|++ +-.|-
T Consensus 69 ~C~~CG~~F-~~~~-------~kPsrCP--~CkSe~Ie~P~ 99 (105)
T 2gmg_A 69 QCRKCGFVF-KAEI-------NIPSRCP--KCKSEWIEEPR 99 (105)
T ss_dssp BBTTTCCBC-CCCS-------SCCSSCS--SSCCCCBCCCC
T ss_pred ChhhCcCee-cccC-------CCCCCCc--CCCCCccCCcc
Confidence 699999998 2211 1347899 7873 44443
No 78
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=34.45 E-value=14 Score=31.27 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=39.3
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
.+..-|++|++-.|............+++.|+++|.| +...+++...+|+.|.-
T Consensus 89 ~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 143 (201)
T 3fxa_A 89 VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV 143 (201)
T ss_dssp GCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 3556799999988887777777777788889998877 34445555567776643
No 79
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=33.66 E-value=95 Score=26.32 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=46.0
Q ss_pred hhHHHHHHHhhhCCEEEEE-----ccCcccccCCcchhhhhcCCCeEEEEcCCCC----------------------CC-
Q 020360 52 KEMNPAEKHCKIADVVLCL-----GTSLQITPACNLPLKCLRGGGKIVIVNLQKT----------------------PK- 103 (327)
Q Consensus 52 ~~l~~A~~~~~~ADLvLVL-----GTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT----------------------~~- 103 (327)
..+..-..++.+||++|++ |.....--+..+ ..|...|.|++.+..+.. +.
T Consensus 56 ~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEi-GyA~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~~N 134 (161)
T 2f62_A 56 DIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEV-GCAAALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLPFN 134 (161)
T ss_dssp HHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHH-HHHHHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCSSC
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHH-HHHHHCCCEEEEEEcCchhhhhhcccccccccccccccCCcch
Confidence 4556667899999999999 433322222222 346678999999865421 10
Q ss_pred ---CCCccEEEEccHHHHHHHHHHHhc
Q 020360 104 ---DKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 104 ---D~~adl~I~g~~devL~~L~k~Lg 127 (327)
..... +..+.++.+..|.++|.
T Consensus 135 LMl~~~~~--~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 135 LMLYDGVE--VFDSFESAFKYFLANFP 159 (161)
T ss_dssp GGGCCSSC--EESSHHHHHHHHHHHSC
T ss_pred hhhhhhhe--eeCCHHHHHHHHHHhhc
Confidence 11222 67788898888887764
No 80
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=32.24 E-value=15 Score=30.28 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=39.4
Q ss_pred HhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEcc
Q 020360 60 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g~ 114 (327)
.+..-|++|++-.|..-.-.......+++.|+++|.| +....++...+|+.|.-.
T Consensus 93 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 93 MVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVK 148 (183)
T ss_dssp TCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeC
Confidence 3456799999998887776777777788899988876 334455555677766543
No 81
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=32.11 E-value=1.4e+02 Score=26.73 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=54.0
Q ss_pred cEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC--CCCCccEEEE-ccHHH
Q 020360 41 TVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP--KDKKASLVIH-GFVDK 117 (327)
Q Consensus 41 dVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~--~D~~adl~I~-g~~de 117 (327)
+++.|...++.+ .....+..||++|.- |.. .+...-...|...|.|+|.-|..... .+....+.+. ++.++
T Consensus 311 ~~~~~~g~~~~~---~~~~~~~~adv~v~p--s~~-e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~~g~~~~~~d~~~ 384 (439)
T 3fro_A 311 NVKVITEMLSRE---FVRELYGSVDFVIIP--SYF-EPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGE 384 (439)
T ss_dssp TEEEECSCCCHH---HHHHHHTTCSEEEEC--BSC-CSSCHHHHHHHHTTCEEEEESSTHHHHHCCTTTCEEECTTCHHH
T ss_pred CEEEEcCCCCHH---HHHHHHHHCCEEEeC--CCC-CCccHHHHHHHHCCCCeEEcCCCCcceeEEcCceEEeCCCCHHH
Confidence 778888877764 355677899988763 332 44444445677899999988765322 1122445454 68888
Q ss_pred HHHHHHHHhccc
Q 020360 118 VVAGVMDLLNLR 129 (327)
Q Consensus 118 vL~~L~k~Lg~~ 129 (327)
+...|.+.+...
T Consensus 385 la~~i~~ll~~~ 396 (439)
T 3fro_A 385 LANAILKALELS 396 (439)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 888888777643
No 82
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=31.96 E-value=13 Score=31.77 Aligned_cols=53 Identities=25% Similarity=0.230 Sum_probs=38.2
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
+..-|++|++-.|....-...+...|++.|+++|.| +...+++...+|+.|.-
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~ 140 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVV 140 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEE
Confidence 456799999988887776667777788889988876 33444555567776644
No 83
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=30.95 E-value=26 Score=23.86 Aligned_cols=33 Identities=21% Similarity=0.459 Sum_probs=20.9
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
.|..|++.|.....+..+......-.|+ .|+..
T Consensus 16 ~C~~C~k~F~~~~~l~~~H~~~k~~~C~--~C~k~ 48 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFDPMTGTFRCT--FCHTE 48 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCS--SSCCB
T ss_pred cCCCCCchhccHHHhHhhcCCCCCEECC--CCCCc
Confidence 4999999997655443322222345798 79853
No 84
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.30 E-value=26 Score=25.94 Aligned_cols=25 Identities=28% Similarity=0.776 Sum_probs=18.0
Q ss_pred cCCCCCCeecchhhhhhhcCCCCCCCCCCCCCCce
Q 020360 3 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 37 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti~~k~t~P~C~~~~CgG~ 37 (327)
.|..||.++..+. ...-+|+ .||..
T Consensus 23 ~C~~Cg~~~~l~~--------~~~iRC~--~CG~R 47 (63)
T 3h0g_L 23 LCADCGARNTIQA--------KEVIRCR--ECGHR 47 (63)
T ss_dssp BCSSSCCBCCCCS--------SSCCCCS--SSCCC
T ss_pred ECCCCCCeeecCC--------CCceECC--CCCcE
Confidence 5999999886542 1346899 79963
No 85
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=28.90 E-value=35 Score=28.02 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=37.0
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
+..-|++|++-.|....-.......+++.|+++|.| +.... +...+|+.|.-
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~ 132 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPL 132 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEEC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEe
Confidence 456799999988887666666667788889988876 33334 66677776643
No 86
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=27.39 E-value=2.7e+02 Score=23.57 Aligned_cols=58 Identities=9% Similarity=-0.118 Sum_probs=38.1
Q ss_pred hhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 62 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
..+|-+|+.++.. ..........|.|+|.+|....... .+. |.-+-.+....++++|-
T Consensus 62 ~~vdgiIi~~~~~-----~~~~~~l~~~~iPvV~i~~~~~~~~--~~~-V~~D~~~~g~~a~~~L~ 119 (276)
T 3jy6_A 62 RGFDGLILQSFSN-----PQTVQEILHQQMPVVSVDREMDACP--WPQ-VVTDNFEAAKAATTAFR 119 (276)
T ss_dssp TTCSEEEEESSCC-----HHHHHHHHTTSSCEEEESCCCTTCS--SCE-EECCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCc-----HHHHHHHHHCCCCEEEEecccCCCC--CCE-EEEChHHHHHHHHHHHH
Confidence 5789999998875 2233345567999999987654321 333 55566666666777663
No 87
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.97 E-value=37 Score=20.93 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=18.9
Q ss_pred cCCCCCCeecchhhhh-hh--cCCCCCCCCCCCCCC
Q 020360 3 ACPSCGSEYFRDFEVE-TI--GLKETSRRCSDLKCG 35 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~-ti--~~k~t~P~C~~~~Cg 35 (327)
.|..|++.|.....+. ++ ........|+ .||
T Consensus 12 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~--~cg 45 (45)
T 2epq_A 12 SCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP--SSG 45 (45)
T ss_dssp EETTTTEECSCHHHHHHHHHHHSCCCCCCCC--CCC
T ss_pred cCCCCCcccCCHHHHHHHHHHccCCCCCCCc--CCC
Confidence 5899999997654432 22 1223456788 675
No 88
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=25.65 E-value=77 Score=31.09 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=50.9
Q ss_pred EEecCCCCChhhHHHHHHHhhhC-CEEEEEccCccc----ccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHH
Q 020360 42 VLDWEDALPPKEMNPAEKHCKIA-DVVLCLGTSLQI----TPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVD 116 (327)
Q Consensus 42 VV~FGE~LPe~~l~~A~~~~~~A-DLvLVLGTSLqV----~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~d 116 (327)
.+.|.+.|+++.+....++++.+ ....-|||+|.. .|+.+++. +++.+|-+|+-+-+..--.+-+.-.
T Consensus 310 ~Ii~SdgLde~~i~~l~~~~~~~~~d~fGVGT~L~~~~~~~~~l~~V~-------Klv~~~G~P~~KlSd~~~K~~~~~~ 382 (407)
T 3os4_A 310 VLVFSDNLDLEKALFLYRHFYQRIKLVFGIGTRLTCDIPDVKPLNIVI-------KLVECNDKPVAKLSDSPGKTICQDP 382 (407)
T ss_dssp EEEECSSCCHHHHHHHHHHHTTTSEEEEEECHHHHSCCTTCCCCCEEE-------EEEEETTEECCCCCSSTTCCCCCCH
T ss_pred EEEECCCCCHHHHHHHHHHhcCCCCcEEeechheeeCCCCCCCcceEE-------EEEEECCcceeEecCCCccccCCCH
Confidence 57799999987665555554444 458899999965 24444432 6888887765542211122333445
Q ss_pred HHHHHHHHHhcccCC
Q 020360 117 KVVAGVMDLLNLRIP 131 (327)
Q Consensus 117 evL~~L~k~Lg~~IP 131 (327)
+.+..+.+.||++-+
T Consensus 383 ~~~~~~~~~~~~~~~ 397 (407)
T 3os4_A 383 AFVDQLRKAFALPLV 397 (407)
T ss_dssp HHHHHHHHHTTCC--
T ss_pred HHHHHHHHHcCCCcc
Confidence 666777777876643
No 89
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.18 E-value=42 Score=23.22 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=17.6
Q ss_pred cCCCCCCeecchhhhhhh-cCCCCCCCCCCCCCCc
Q 020360 3 ACPSCGSEYFRDFEVETI-GLKETSRRCSDLKCGA 36 (327)
Q Consensus 3 ~C~~Cgk~y~~d~~~~ti-~~k~t~P~C~~~~CgG 36 (327)
+|..||.+|+-+.--.|. .+-+..-.|| .||.
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP--~Cg~ 38 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLPDDWCCP--VCGV 38 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSCTTCBCT--TTCC
T ss_pred ECCCCCeEEeCCcCCCcchhhCCCCCcCc--CCCC
Confidence 699999999743211010 0101123799 7984
No 90
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=25.17 E-value=93 Score=25.03 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=48.7
Q ss_pred ccEEecCCCCChhhHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC--C-CCCccEEEEccHH
Q 020360 40 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP--K-DKKASLVIHGFVD 116 (327)
Q Consensus 40 PdVV~FGE~LPe~~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~--~-D~~adl~I~g~~d 116 (327)
++|.+.| .++.+ .....+..||++|.. |. ..+...-+..|...|.++|.-+..... . +....+.+.++.+
T Consensus 78 ~~v~~~g-~~~~~---e~~~~~~~adi~v~p--s~-~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~ 150 (177)
T 2f9f_A 78 DNVKFLG-SVSEE---ELIDLYSRCKGLLCT--AK-DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVN 150 (177)
T ss_dssp TTEEEEE-SCCHH---HHHHHHHHCSEEEEC--CS-SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHH
T ss_pred CcEEEeC-CCCHH---HHHHHHHhCCEEEeC--CC-cCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHH
Confidence 4676664 44543 355677899998862 22 233333345677899999987754322 1 2223344467888
Q ss_pred HHHHHHHHHhc
Q 020360 117 KVVAGVMDLLN 127 (327)
Q Consensus 117 evL~~L~k~Lg 127 (327)
++...|.+.+.
T Consensus 151 ~l~~~i~~l~~ 161 (177)
T 2f9f_A 151 EIIDAMKKVSK 161 (177)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88877777774
No 91
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=24.68 E-value=26 Score=30.45 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHhhhCCEEEEEccCcccccCCcchhhhhc--CCCeEEEE-cCCCCCCCCCccEEEEc
Q 020360 59 KHCKIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIV-NLQKTPKDKKASLVIHG 113 (327)
Q Consensus 59 ~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~--~G~~lVII-NlqpT~~D~~adl~I~g 113 (327)
..+..-|++|++-.|....-.......+++ .|+++|.| |....++...+|+.|.-
T Consensus 102 ~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 102 GILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp GGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 345677999999888876666666677888 99998876 44445555566666543
No 92
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=23.88 E-value=1.5e+02 Score=24.74 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=45.5
Q ss_pred hHHHHHHHhhhCCEEEEEccCcccccCCcc---hhhhhcCCCeEEEEcCCCC--CC---------CCCccEEEEccHHHH
Q 020360 53 EMNPAEKHCKIADVVLCLGTSLQITPACNL---PLKCLRGGGKIVIVNLQKT--PK---------DKKASLVIHGFVDKV 118 (327)
Q Consensus 53 ~l~~A~~~~~~ADLvLVLGTSLqV~PAa~L---p~~a~~~G~~lVIINlqpT--~~---------D~~adl~I~g~~dev 118 (327)
....-.+++..||++|++.+ .|-.+- ...|...|.|++.+..+.. .. ....++... +.+++
T Consensus 67 i~~~d~~~i~~aD~vva~~~----~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~~~~~~~~~~y-~~~el 141 (165)
T 2khz_A 67 IHEQDLNWLQQADVVVAEVT----QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDY-AEGEV 141 (165)
T ss_dssp HHHHHHHHHHHCSEEEEECS----SCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTCCSSSEEEEEC-CTTTH
T ss_pred HHHHHHHHHHhCCEEEEECC----CCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccCccceeEEEec-CHHHH
Confidence 34555678999999999887 222222 1346778999998854441 11 022334445 77778
Q ss_pred HHHHHHHhcccCC
Q 020360 119 VAGVMDLLNLRIP 131 (327)
Q Consensus 119 L~~L~k~Lg~~IP 131 (327)
...|.+.|.--.|
T Consensus 142 ~~~l~~~~~~~~~ 154 (165)
T 2khz_A 142 ETMLDRYFEAYLP 154 (165)
T ss_dssp HHHHHHHHHTSCS
T ss_pred HHHHHHHHHhcCC
Confidence 7777777654333
No 93
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=23.63 E-value=3.6e+02 Score=23.29 Aligned_cols=62 Identities=16% Similarity=0.053 Sum_probs=37.2
Q ss_pred hhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHhc
Q 020360 62 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 127 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~Lg 127 (327)
..+|.+|+.++.... .......+...|.|+|.+|..... ...+..|..+-.+....++++|-
T Consensus 57 ~~vdgiIi~~~~~~~--~~~~~~~~~~~~iPvV~~~~~~~~--~~~~~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 57 RGVDVLVIIPYNGQV--LSNVVKEAKQEGIKVLAYDRMIND--ADIDFYISFDNEKVGELQAKALV 118 (313)
T ss_dssp TTCSEEEEECSSTTS--CHHHHHHHHTTTCEEEEESSCCTT--SCCSEEEEECHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCChhh--hHHHHHHHHHCCCeEEEECCcCCC--CCceEEEecCHHHHHHHHHHHHH
Confidence 579999999876432 122344456789999999876544 22323455555555555555543
No 94
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=22.79 E-value=75 Score=31.62 Aligned_cols=81 Identities=11% Similarity=-0.012 Sum_probs=47.9
Q ss_pred EEecCCCCChhhHHHHHHHhhh-CCEEEEEccCccc------------ccCCcchhhhhcCCCeEEEEcCCCCCCCCCcc
Q 020360 42 VLDWEDALPPKEMNPAEKHCKI-ADVVLCLGTSLQI------------TPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS 108 (327)
Q Consensus 42 VV~FGE~LPe~~l~~A~~~~~~-ADLvLVLGTSLqV------------~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~ad 108 (327)
++.|.+.|+++.+....+..+. .....-|||+|.. .|+.+++ .+++.+|-+|+-+-+..-
T Consensus 320 ~Iv~SdgLde~~i~~L~~~~~~~~~d~FGVGT~L~~~~~~~~~~~~~~~~~l~~V-------yKLve~~G~P~~KlSd~~ 392 (446)
T 4hl7_A 320 LFIFSDGLDFDQALELCEYFAGRVKISFGIGTFLTNDLANWRNAAGVEYRPLSIV-------IKLAECQGRPVAKISDQP 392 (446)
T ss_dssp EEEECSSCCHHHHHHHHHHHTTTSEEEEEECHHHHSCCTTCBCTTCCBCCCCEEE-------EEEEEETTEECCBCCSSG
T ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCcEEEeccceeccCcccccccccCCCCceeE-------EEEEEECCcceeEecCCc
Confidence 5789999998766554444444 3458889999964 2333332 268888876654311111
Q ss_pred EEEEccHHHHHHHHHHHhccc
Q 020360 109 LVIHGFVDKVVAGVMDLLNLR 129 (327)
Q Consensus 109 l~I~g~~devL~~L~k~Lg~~ 129 (327)
-.+-++-.+++..+-+.+|++
T Consensus 393 gK~t~~d~~~~~~~k~~f~~~ 413 (446)
T 4hl7_A 393 EKAMCEDPIFLANLKRRFNIE 413 (446)
T ss_dssp GGCBCSCHHHHHHHHHHTTCC
T ss_pred ccccCCCHHHHHHHHHHcCCc
Confidence 112244455666776677754
No 95
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=22.78 E-value=2.4e+02 Score=25.04 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=31.0
Q ss_pred hhhHHHHHHHhh---hCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCC
Q 020360 51 PKEMNPAEKHCK---IADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP 102 (327)
Q Consensus 51 e~~l~~A~~~~~---~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~ 102 (327)
+...+.+...+. .+|.+|+++..... ..+...+...|.|+|.+|.....
T Consensus 47 ~~~~~~i~~~i~~~~~vDgiIi~~~~~~~---~~~~~~~~~~giPvV~~~~~~~~ 98 (350)
T 3h75_A 47 QNTLQQARELFQGRDKPDYLMLVNEQYVA---PQILRLSQGSGIKLFIVNSPLTL 98 (350)
T ss_dssp HHHHHHHHHHHHSSSCCSEEEEECCSSHH---HHHHHHHTTSCCEEEEEESCCCT
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCchhhH---HHHHHHHHhCCCcEEEEcCCCCh
Confidence 333445555665 79999998743222 22334456789999999876554
No 96
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=22.06 E-value=68 Score=30.76 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=47.8
Q ss_pred hHHHHHHHhhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCC-C---CCCCCCccEEEEcc---HHHHHHHHHHH
Q 020360 53 EMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ-K---TPKDKKASLVIHGF---VDKVVAGVMDL 125 (327)
Q Consensus 53 ~l~~A~~~~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlq-p---T~~D~~adl~I~g~---~devL~~L~k~ 125 (327)
..+.+.+.++++|++||+|..- -.-...|...|.+.|.+.+.|.-. . .-+.....+-|-+. .+.++.++.+.
T Consensus 215 RQ~av~~lA~~vD~miVVGg~n-SSNT~rL~eia~~~g~~ty~Ie~~~el~~~wl~g~~~VGITAGASTP~~lieeVi~~ 293 (328)
T 3szu_A 215 RQEAVRALAEQAEVVLVVGSKN-SSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVAR 293 (328)
T ss_dssp HHHHHHHHHHHCSEEEEECCTT-CHHHHHHHHHHHHTTCEEEEESSGGGCCHHHHTTCSEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEeCCCC-CchHHHHHHHHHHhCCCEEEeCChHHCCHHHhCCCCEEEEeecCCCCHHHHHHHHHH
Confidence 4556667778999999999742 234456777788888888888532 1 11233344555443 36677777777
Q ss_pred hc
Q 020360 126 LN 127 (327)
Q Consensus 126 Lg 127 (327)
|.
T Consensus 294 l~ 295 (328)
T 3szu_A 294 LQ 295 (328)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 97
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=22.06 E-value=26 Score=30.70 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=38.3
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEEE-cCCCC-----------CCCCCccEEEE
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKT-----------PKDKKASLVIH 112 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVII-NlqpT-----------~~D~~adl~I~ 112 (327)
+..-|++|++-.|..-.-.......|++.|+++|.| |...+ ++...+|+.|.
T Consensus 106 ~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 106 VTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp CCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 566799999999988777777777888899998877 33222 45566777764
No 98
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=21.88 E-value=58 Score=30.39 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=38.6
Q ss_pred hhCCEEEEEccCcccccCCcchhhhhcCCCeEE-EEcCCCCCCCCCccEEEEc
Q 020360 62 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIV-IVNLQKTPKDKKASLVIHG 113 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lV-IINlqpT~~D~~adl~I~g 113 (327)
..-|++|++--|+...-.......+++.|++++ |.|...+++.+.+|+.|.-
T Consensus 89 ~~~dl~i~iS~SG~T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~ 141 (334)
T 3hba_A 89 LAGGLVIVISQSGRSPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPL 141 (334)
T ss_dssp CTTCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeee
Confidence 456899999888876666666677788888777 5566677777778877643
No 99
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.83 E-value=3.9e+02 Score=22.69 Aligned_cols=58 Identities=12% Similarity=-0.029 Sum_probs=36.1
Q ss_pred hhCCEEEEEccCcccccCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHh
Q 020360 62 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~L 126 (327)
...|-+|++++.. ...+...+...|.|+|.++..... ...+ .|..+-.+....++++|
T Consensus 63 ~~vdgiIi~~~~~----~~~~~~~~~~~~iPvV~~~~~~~~--~~~~-~V~~D~~~~g~~a~~~L 120 (291)
T 3egc_A 63 RRVDGLILAPSEG----EHDYLRTELPKTFPIVAVNRELRI--PGCG-AVLSENVRGARTAVEYL 120 (291)
T ss_dssp TTCSEEEECCCSS----CCHHHHHSSCTTSCEEEESSCCCC--TTCE-EEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCC----ChHHHHHhhccCCCEEEEecccCC--CCCC-EEEECcHHHHHHHHHHH
Confidence 5789999988765 222333445679999999977653 1223 34445555555555555
No 100
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=20.80 E-value=59 Score=33.91 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=31.1
Q ss_pred HhhhCCEEEEEccCcccc-cCC---cchhh-------hh--------cCCCeEEEEcCCCCCCCCCcc
Q 020360 60 HCKIADVVLCLGTSLQIT-PAC---NLPLK-------CL--------RGGGKIVIVNLQKTPKDKKAS 108 (327)
Q Consensus 60 ~~~~ADLvLVLGTSLqV~-PAa---~Lp~~-------a~--------~~G~~lVIINlqpT~~D~~ad 108 (327)
.+++||++|++|+..... |.. .+... ++ ..|+++|+|++..|.....+|
T Consensus 221 D~~~ad~il~~G~Np~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~klivIDPr~t~ta~~Ad 288 (825)
T 1g8k_A 221 DAQLADVIWSIGNNPYESQTNYFLNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIAR 288 (825)
T ss_dssp HHHHCSEEEEESCCHHHHSHHHHHHTHHHHHHTTTHHHHHHHCTTCCCCCCEEEEECSSCCHHHHHHH
T ss_pred HHHhCCEEEEeCCChHHhCcchHhhhHHHhhhhhHHHHhhhhccccccCCCEEEEEeCCCCchhhhhh
Confidence 467999999999865432 211 11100 11 158999999999887544554
No 101
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=20.64 E-value=40 Score=31.48 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=39.7
Q ss_pred hhhCCEEEEEccCcccccCCcchhhhhcCCCeEEE-EcCCCCCCCCCccEEEEcc
Q 020360 61 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVI-VNLQKTPKDKKASLVIHGF 114 (327)
Q Consensus 61 ~~~ADLvLVLGTSLqV~PAa~Lp~~a~~~G~~lVI-INlqpT~~D~~adl~I~g~ 114 (327)
+..-|++|++--|+...-.......|++.|++++. .|...+++.+.+|+.|.-.
T Consensus 100 l~~~dlvI~iS~SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~ 154 (355)
T 2a3n_A 100 LNKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMR 154 (355)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeC
Confidence 35679999998888776666667778888987764 4666666667788777543
No 102
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=20.45 E-value=3.5e+02 Score=22.85 Aligned_cols=62 Identities=15% Similarity=0.003 Sum_probs=37.4
Q ss_pred hhCCEEEEEccCcccc-cCCcchhhhhcCCCeEEEEcCCCCCCCCCccEEEEccHHHHHHHHHHHh
Q 020360 62 KIADVVLCLGTSLQIT-PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL 126 (327)
Q Consensus 62 ~~ADLvLVLGTSLqV~-PAa~Lp~~a~~~G~~lVIINlqpT~~D~~adl~I~g~~devL~~L~k~L 126 (327)
..+|-+|++++..... +...+...+...|.|+|.+|...... ..+. |..+-.+....++++|
T Consensus 70 ~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~-V~~d~~~~~~~a~~~L 132 (298)
T 3tb6_A 70 QHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAEL--AAPS-FTLDDVKGGMMAAEHL 132 (298)
T ss_dssp TCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTC--SSCE-EEECHHHHHHHHHHHH
T ss_pred CCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCC--CCCE-EEeCcHHHHHHHHHHH
Confidence 5789999988754221 22223344557799999999765432 2223 4555556666666665
Done!