BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020361
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1
Length = 423
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 259/326 (79%), Positives = 291/326 (89%)
Query: 2 ELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYA 61
ELT +FRGS+I+EL NF A+V+DIA+VH +AYV GLEKAMD AS G+I IEGSGPTYA
Sbjct: 98 ELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGSGPTYA 157
Query: 62 TATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNV 121
T+TTFQ+SL AAGAG+ALVDSV+AAS+N DPP+GFALIRPPGHHA+PKGPMGFCVFGNV
Sbjct: 158 TSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNV 217
Query: 122 AIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVG 181
AIAAR+AQR HGLKR+FIIDFDVHHGNGTNDAF +DPDIFFLSTHQDGSYPGTGKI ++G
Sbjct: 218 AIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQDGSYPGTGKISDIG 277
Query: 182 RGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQ 241
+G GEG+TLNLPLPGGSGD AMRTVF E+IVPCAQRFKPD+ILVSAGYDAHVLDPLA+LQ
Sbjct: 278 KGKGEGTTLNLPLPGGSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAHVLDPLANLQ 337
Query: 242 FTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD 301
FTT TYY LA +IK+LAK++CG RCVFFLEGGYNL SLS SVADSFRA LGE S ASEFD
Sbjct: 338 FTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLGEDSLASEFD 397
Query: 302 NPAILYEEPSAKVKQAIERVKHIHSL 327
NPA LY+EP KV+ AI+R K IH L
Sbjct: 398 NPAYLYDEPMRKVRDAIQRAKSIHCL 423
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 171/327 (52%), Gaps = 21/327 (6%)
Query: 7 FRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTF 66
F I+ L+ F AS++D+ VH YV LE + + GII + + P F
Sbjct: 40 FESERIVLLEPFK-ASLEDVLEVHTEEYVRFLEM---ESKKGGIIDFDTNIPV----GVF 91
Query: 67 QESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAAR 126
+L AAG I +V+ FA+IRPPGHHA P GFC N+AI +
Sbjct: 92 DRALLAAGGAIRAAQAVLNKECEN-----AFAMIRPPGHHAKPYIGAGFCYLNNMAIMVK 146
Query: 127 YAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGE 186
+ + G +R+ I+D+D HHG+GT + FY+D + F+STHQ YPGTG +E G G GE
Sbjct: 147 WLLK-QGFERIAILDWDAHHGDGTQEIFYNDDRVLFISTHQMPLYPGTGYPEECGTGKGE 205
Query: 187 GSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGT 246
G T+N+PLP G+GD V E+I P FKP I +SAG D H DP+ SL T
Sbjct: 206 GYTVNIPLPPGTGDEGYMMVIDEIIEPVVNEFKPQFIAISAGQDNHFTDPITSLALTARG 265
Query: 247 YYMLAANIKQLAKDLCGSRCVFFLEGGYNLN-SLSYSVADSFRAFLG-EPSKASEFDN-- 302
Y + +A+ C R V LEGGY++ +L Y+ A G + S E +N
Sbjct: 266 YAEMMRRAVAMAEKHCDGRLVAVLEGGYSVEGALPYTNLGIIAAMAGFDLSAIREPENYL 325
Query: 303 PAILYEEPSA---KVKQAIERVKHIHS 326
P +L+ + + K+K IE VK +HS
Sbjct: 326 PELLWRKRDSALVKLKHNIEDVKRVHS 352
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2
Length = 666
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 159/281 (56%), Gaps = 15/281 (5%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALV 80
AS +++ VH+ Y++ ++K ++ L + Y TF + AAGA + LV
Sbjct: 55 ASEEELGLVHSPEYIALVQKTQTLDKEELHALSKQYNAVYFHPDTFHCARLAAGAALQLV 114
Query: 81 DSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFII 140
D+V+ + + G AL+RPPGHH+ GFCVF NVA+AA++A++ +GL+R+ I+
Sbjct: 115 DAVLTGAVHN-----GLALVRPPGHHSQRAAANGFCVFNNVALAAKHAKQKYGLQRILIV 169
Query: 141 DFDVHHGNGTNDAFYDDPDIFFLSTH--QDGSYP---GTGKIDEVGRGDGEGSTLNLPLP 195
D+DVHHG G F DDP + + S H + GS+ D VG+G G+G T+NLP
Sbjct: 170 DWDVHHGQGIQYIFNDDPSVLYFSWHRYEHGSFWPFLPESDADAVGQGQGQGFTVNLPWN 229
Query: 196 G-GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANI 254
G G+ F V++P A F P+L+LVSAG+D+ + DP +Q T + A++
Sbjct: 230 QVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECF----AHL 285
Query: 255 KQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 295
QL + L G R LEGGY+L SL+ SV + LG+P+
Sbjct: 286 TQLLQVLAGGRICAVLEGGYHLESLAQSVCMMVQTLLGDPT 326
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 135/229 (58%), Gaps = 13/229 (5%)
Query: 60 YATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFG 119
Y T T + + A GA + VD + + + ++RPPGHHA GFC+F
Sbjct: 518 YLTRDTLKVARKAVGAVLQSVDEIFEKDAGQRN---ALVIVRPPGHHASASKSSGFCIFN 574
Query: 120 NVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGK- 176
NVA+AA+YAQR H KRV I+D+DVHHGNGT + FY+D ++ ++S H+ G++ G+
Sbjct: 575 NVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQEIFYEDSNVMYMSIHRHDKGNFYPIGEP 634
Query: 177 --IDEVGRGDGEGSTLNLPLPG-GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHV 233
+VG G GEG ++N+P G GD + F VI+P A +F PDL+L+SAG+DA V
Sbjct: 635 KDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQRVIMPIAYQFNPDLVLISAGFDAAV 694
Query: 234 LDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYS 282
DPL + T T+ ++ + LA G R + LEGGYNL S+S S
Sbjct: 695 DDPLGEYKVTPETFALMTYQLSSLA----GGRIITVLEGGYNLTSISNS 739
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 147/305 (48%), Gaps = 26/305 (8%)
Query: 1 MELTSEFRGSEIIE----LKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGS 56
+++ ++I+E L NF D+ H ++ V L ++ + + I
Sbjct: 42 LKIKEALTKTKILEKCTVLTNFLEIDDADLEVTHDKSMVKDLMESEKKTQED----INSQ 97
Query: 57 GPTYATATTFQESLAAAGAGIALVDSVVAASKNR---PDPPLGFALIRPPGHHAIPKGPM 113
Y + + S+ A G+A V + NR + GFA++RPPGHHA P
Sbjct: 98 CEKYDSVFMTENSMKVAKDGVACVRDLT----NRIMANEASNGFAVVRPPGHHADSVSPC 153
Query: 114 GFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGS--- 170
GFC+F NVA AA A + G +R+ I+D DVHHG+GT FYDD + + S H+
Sbjct: 154 GFCLFNNVAQAAEEAFFS-GAERILIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEHGLF 212
Query: 171 YPG--TGKIDEVGRGDGEGSTLNLPL-PGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSA 227
+P D +G G G G NL L G D+ ++ V++P A +F P +++SA
Sbjct: 213 WPHLPESDFDHIGSGKGLGYNANLALNETGCTDSDYLSIIFHVLLPLATQFDPHFVIISA 272
Query: 228 GYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSF 287
G+DA + DPL + T Y + ++K LA+ R + LEGGYN + +V
Sbjct: 273 GFDALLGDPLGGMCLTPDGYSHILYHLKSLAQ----GRMLVVLEGGYNHQISAVAVQRCV 328
Query: 288 RAFLG 292
R LG
Sbjct: 329 RVLLG 333
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1
Length = 669
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 153/281 (54%), Gaps = 15/281 (5%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALV 80
AS +++ VH+ YVS + + ++ L Y +TF + AAGAG+ LV
Sbjct: 55 ASEEELGLVHSPEYVSLVRETQVLGKEELQALSGQFDAIYFHPSTFHCARLAAGAGLQLV 114
Query: 81 DSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFII 140
D+V+ + G AL+RPPGHH GFCVF NVAIAA +A++ HGL R+ ++
Sbjct: 115 DAVLTGAVQN-----GLALVRPPGHHGQRAAANGFCVFNNVAIAAAHAKQKHGLHRILVV 169
Query: 141 DFDVHHGNGTNDAFYDDPDIFFLSTHQD-----GSYPGTGKIDEVGRGDGEGSTLNLPLP 195
D+DVHHG G F DDP + + S H+ + D VGRG G G T+NLP
Sbjct: 170 DWDVHHGQGIQYLFEDDPSVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLPWN 229
Query: 196 G-GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANI 254
G G+ F +++P A F P+L+LVSAG+D+ + DP +Q T + A++
Sbjct: 230 QVGMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECF----AHL 285
Query: 255 KQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 295
QL + L G R LEGGY+L SL+ SV + + LG+P+
Sbjct: 286 TQLLQVLAGGRVCAVLEGGYHLESLAESVCMTVQTLLGDPA 326
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 154/290 (53%), Gaps = 27/290 (9%)
Query: 13 IELKNFSP-------ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATT 65
IE + SP A +DDI VH+ +V LE R G + + TY T +
Sbjct: 31 IESSDLSPRFVEPGMAGIDDILMVHSSTHVEYLEVFAGRGG--GWLDYD----TYMTPES 84
Query: 66 FQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAA 125
F + +AG +++AA + D ++L RPPGHHA MGFC+F N+AIA
Sbjct: 85 FSVARLSAGG------AMLAAEEALRDG-WSYSLGRPPGHHATYDRSMGFCIFNNIAIAI 137
Query: 126 RYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGS--YPGTGKIDEVGRG 183
+A+R G+ R ++DFDVHHGNGT+ FY D D+ ++S HQD +PGTG IDE G G
Sbjct: 138 EHARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRDVMYISIHQDPRTLFPGTGFIDETGSG 197
Query: 184 DGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 243
+GEG LN+P+P GSG+ + ++ + F+PD+I VSAG+DAH DPLA +
Sbjct: 198 EGEGFNLNIPMPRGSGNREYLWILGMILPAVLEGFRPDMIFVSAGFDAHRRDPLAEIMVD 257
Query: 244 TGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGE 293
+ + I Q G C LEGGY+ +L S R GE
Sbjct: 258 EEFFSWIGWFIHQ-----TGLPCTAVLEGGYDPEALGRSNIAFMRGLDGE 302
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HDA1 PE=1 SV=1
Length = 706
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 166/315 (52%), Gaps = 24/315 (7%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALV 80
A+ ++I VH + ++ +E + ++ + E Y ++ + G I
Sbjct: 126 ATSEEILEVHTKEHLEFIESTEKMSREELLKETEKGDSVYFNNDSYASARLPCGGAIEAC 185
Query: 81 DSVVAAS-KNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAH--GLKRV 137
+VV KN A++RPPGHHA P+ GFC+F NVA+AA+ + + ++R+
Sbjct: 186 KAVVEGRVKN------SLAVVRPPGHHAEPQAAGGFCLFSNVAVAAKNILKNYPESVRRI 239
Query: 138 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ---DGSYPGT--GKIDEVGRGDGEGSTLNL 192
I+D+D+HHGNGT +FY D + ++S H+ YPGT G+ D+ G G GEG N+
Sbjct: 240 MILDWDIHHGNGTQKSFYQDDQVLYVSLHRFEMGKYYPGTIQGQYDQTGEGKGEGFNCNI 299
Query: 193 PLP-GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLA 251
P GG GD F +V++P + FKPDL+++S+G+DA D + T Y +
Sbjct: 300 TWPVGGVGDAEYMWAFEQVVMPMGREFKPDLVIISSGFDAADGDTIGQCHVTPSCYGHMT 359
Query: 252 ANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPS 311
+K LA+ G+ CV LEGGYNL++++ S + +GEP E +P +P
Sbjct: 360 HMLKSLAR---GNLCV-VLEGGYNLDAIARSALSVAKVLIGEP--PDELPDPL---SDPK 410
Query: 312 AKVKQAIERVKHIHS 326
+V + I++V + S
Sbjct: 411 PEVIEMIDKVIRLQS 425
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 152/284 (53%), Gaps = 20/284 (7%)
Query: 20 PASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSG--PTYATATTFQESLAAAGAGI 77
PA ++ + H+ YV L ++ + EG+ Y +TF + A GA
Sbjct: 529 PALDSELLTCHSAEYVEHLRTTEKMKTRD--LHREGANFDSIYICPSTFACAKLATGAAC 586
Query: 78 ALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLK-R 136
LV++V++ G A++RPPGHHA P GFC F +VA+AAR+AQ G R
Sbjct: 587 RLVEAVLSGEVLN-----GIAVVRPPGHHAEPNAACGFCFFNSVAVAARHAQIIAGRALR 641
Query: 137 VFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSY---PGTGKIDEVGRGDGEGSTLN 191
+ I+D+DVHHGNGT F DDP + ++S H+ G++ G +VGR G G T+N
Sbjct: 642 ILIVDWDVHHGNGTQHIFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRDAGIGFTVN 701
Query: 192 LPLPGGS-GDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYML 250
+P G GD +H +++P A F P+L+L+SAG+DA DPL Q T Y
Sbjct: 702 VPWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLISAGFDAAQGDPLGGCQVTPEGY--- 758
Query: 251 AANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP 294
A++ L L G R + LEGGYNL S+S S+A + LG+P
Sbjct: 759 -AHLTHLLMGLAGGRIILILEGGYNLASISESMAACTHSLLGDP 801
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 146/285 (51%), Gaps = 15/285 (5%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALV 80
A +++ VH+ Y+ +E + +L E Y ++ + A G+ + LV
Sbjct: 135 AEKEELMLVHSLEYIDLMETTQYMNEGELRVLAETYDSVYLHPNSYSCACLATGSVLRLV 194
Query: 81 DSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFII 140
D+++ A G A+IRPPGHHA G+C+F ++A+AARYAQ+ H ++RV I+
Sbjct: 195 DALMGAEIRN-----GMAVIRPPGHHAQHNLMDGYCMFNHLAVAARYAQKKHRIQRVLIV 249
Query: 141 DFDVHHGNGTNDAFYDDPDIFFLSTH--QDGSYP---GTGKIDEVGRGDGEGSTLNLPL- 194
D+DVHHG GT F DP + + S H + G + +G G G+G T+N+P
Sbjct: 250 DWDVHHGQGTQFIFDQDPSVLYFSIHRYEHGRFWPHLKASNWSTIGFGQGQGYTINVPWN 309
Query: 195 PGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANI 254
G D F +++P A F+P L+LV+AG+DA DP + T + A++
Sbjct: 310 QTGMRDADYIAAFLHILLPVASEFQPQLVLVAAGFDALHGDPKGEMAATPAGF----AHL 365
Query: 255 KQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASE 299
L L G + + LEGGYNL +L+ V+ S LG+P E
Sbjct: 366 THLLMGLAGGKLILSLEGGYNLRALAKGVSASLHTLLGDPCPMLE 410
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1
Length = 1080
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 146/268 (54%), Gaps = 29/268 (10%)
Query: 72 AAGAGIALVDSVVAAS-KNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQR 130
A G I LV V KN GFA++RPPGHHA PMGFC F +VAIAA+ Q+
Sbjct: 770 AVGCVIELVFKVATGELKN------GFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQ 823
Query: 131 AHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEG 187
+ ++ I+D+DVHHGNGT AFY+DP++ ++S H+ DG+ +PG+G DEVG G G G
Sbjct: 824 RLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGSGAPDEVGTGAGVG 883
Query: 188 STLNLPLPGG----SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 243
+N+ GG GDT T F V++P A F PD++LVS+G+DA P
Sbjct: 884 FNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTP----- 938
Query: 244 TGTYYMLAANIKQLAKD---LCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEF 300
G Y + A L K L G R V LEGG++L ++ + A LG +E
Sbjct: 939 LGGYNLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLG-----NEL 993
Query: 301 D--NPAILYEEPSAKVKQAIERVKHIHS 326
D +L + +A ++E+V IHS
Sbjct: 994 DPLPEKVLQQRANANAVHSMEKVIEIHS 1021
>sp|Q70I53|HDAH_ALCSD Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain
DSM 11172) GN=hdaH PE=1 SV=3
Length = 369
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 13/280 (4%)
Query: 25 DIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVV 84
DI H+ A++ + M R S G G T + + +AG + L V
Sbjct: 71 DILRAHSAAHL----ENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVA 126
Query: 85 AASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDV 144
+ G+AL+ PPGHHA MGFC+F N ++AA YA+ G++RV I+D+DV
Sbjct: 127 TGELSA-----GYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDV 181
Query: 145 HHGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAM 203
HHGNGT D +++DP + +S HQ + P +G E G G+G G +N+PLP GSG+ A
Sbjct: 182 HHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAY 241
Query: 204 RTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCG 263
+V++ + ++P LI+V +G+DA +LDPLA + T + +A A D+C
Sbjct: 242 LHAMDQVVLHALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICD 301
Query: 264 SRCVFFLEGGYNLNSLSY---SVADSFRAFLGEPSKASEF 300
R VF EGGY+ + L + +V + P EF
Sbjct: 302 GRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEF 341
>sp|P56524|HDAC4_HUMAN Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3
Length = 1084
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 136/243 (55%), Gaps = 22/243 (9%)
Query: 96 GFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 155
GFA++RPPGHHA PMGFC F +VA+AA+ Q+ + ++ I+D+DVHHGNGT AFY
Sbjct: 793 GFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFY 852
Query: 156 DDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGSTLNLPLPGG----SGDTAMRTVFH 208
DP + ++S H+ DG+ +PG+G DEVG G G G +N+ GG GD F
Sbjct: 853 SDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFR 912
Query: 209 EVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKD---LCGSR 265
V++P A F PD++LVS+G+DA P G Y + A L K L G R
Sbjct: 913 TVVMPIASEFAPDVVLVSSGFDAVEGHPTP-----LGGYNLSARCFGYLTKQLMGLAGGR 967
Query: 266 CVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD--NPAILYEEPSAKVKQAIERVKH 323
V LEGG++L ++ + A LG +E D +L + P+A +++E+V
Sbjct: 968 IVLALEGGHDLTAICDASEACVSALLG-----NELDPLPEKVLQQRPNANAVRSMEKVME 1022
Query: 324 IHS 326
IHS
Sbjct: 1023 IHS 1025
>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2
Length = 1077
Score = 167 bits (424), Expect = 8e-41, Method: Composition-based stats.
Identities = 96/244 (39%), Positives = 138/244 (56%), Gaps = 24/244 (9%)
Query: 96 GFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 155
GFA++RPPGHHA PMGFC F +VAIAA+ Q+ + ++ I+D+DVHHGNGT AFY
Sbjct: 786 GFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFY 845
Query: 156 DDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGSTLNLPLPGG----SGDTAMRTVFH 208
+DP++ ++S H+ DG+ +PG+G DEVG G G G +N+ GG GD F
Sbjct: 846 NDPNVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFR 905
Query: 209 EVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSR 265
V++P A F PD++LVS+G+DA H PL + + L + LA G R
Sbjct: 906 TVVMPIANEFAPDVVLVSSGFDAVEGHP-TPLGGYNLSAKCFGYLTKQLMGLA----GGR 960
Query: 266 CVFFLEGGYNLNSLSYSVADSFRAFLG---EPSKASEFDNPAILYEEPSAKVKQAIERVK 322
V LEGG++L ++ + A LG EP +L++ P+A ++E+V
Sbjct: 961 IVLALEGGHDLTAICDASEACVSALLGNELEPLPEK------VLHQRPNANAVHSMEKVM 1014
Query: 323 HIHS 326
IHS
Sbjct: 1015 GIHS 1018
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1
Length = 1076
Score = 167 bits (423), Expect = 9e-41, Method: Composition-based stats.
Identities = 95/244 (38%), Positives = 138/244 (56%), Gaps = 24/244 (9%)
Query: 96 GFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 155
GFA++RPPGHHA PMGFC F +VA+AA+ Q+ + ++ I+D+DVHHGNGT AFY
Sbjct: 785 GFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFY 844
Query: 156 DDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGSTLNLPLPGG----SGDTAMRTVFH 208
+DP++ ++S H+ DG+ +PG+G DEVG G G G +N+ GG GD F
Sbjct: 845 NDPNVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLEPPMGDAEYLAAFR 904
Query: 209 EVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSR 265
V++P A F PD++LVS+G+DA H PL + + L + LA G R
Sbjct: 905 TVVMPIANEFAPDVVLVSSGFDAVEGHP-TPLGGYNLSAKCFGYLTKQLMGLA----GGR 959
Query: 266 CVFFLEGGYNLNSLSYSVADSFRAFLG---EPSKASEFDNPAILYEEPSAKVKQAIERVK 322
V LEGG++L ++ + A LG EP +L++ P+A ++E+V
Sbjct: 960 LVLALEGGHDLTAICDASEACVSALLGNELEPLPEK------VLHQRPNANAVHSMEKVM 1013
Query: 323 HIHS 326
IHS
Sbjct: 1014 DIHS 1017
>sp|Q80ZH1|HDAC5_CRIGR Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1
Length = 1111
Score = 164 bits (415), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 134/241 (55%), Gaps = 18/241 (7%)
Query: 96 GFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 155
GFA+IRPPGHHA MGFC F +VAI A+ Q+ + +V I+D+D+HHGNGT AFY
Sbjct: 812 GFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIHHGNGTQQAFY 871
Query: 156 DDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGSTLNLPLPGGS----GDTAMRTVFH 208
DDP + ++S H+ +G+ +PG+G +EVG G G G +N+ GG GD T F
Sbjct: 872 DDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGMGYNVNVAWTGGVDPPIGDVEYLTAFR 931
Query: 209 EVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSR 265
V++P A F PD++LVSAG+DA H L PL T + L + LA G R
Sbjct: 932 TVVMPIAHEFSPDVVLVSAGFDAVEGH-LSPLGGYSVTARCFGHLTRQLMTLA----GGR 986
Query: 266 CVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIH 325
V LEGG++L ++ + A L + D A+L ++PS +E+V I
Sbjct: 987 VVLALEGGHDLTAICDASEACVSALLS--VELQPLDE-AVLQQKPSINAVATLEKVIEIQ 1043
Query: 326 S 326
S
Sbjct: 1044 S 1044
>sp|P56523|CLR3_SCHPO Histone deacetylase clr3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr3 PE=1 SV=1
Length = 687
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 149/284 (52%), Gaps = 21/284 (7%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPT--YATATTFQESLAAAGAGIA 78
A+++++ VH++ + ++ S + + +E + Y + F LA A
Sbjct: 115 ATLEELLQVHSQEMYDRVTNT-EKMSHEDLANLEKISDSLYYNNESAFCARLACGSAIET 173
Query: 79 LVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAAR-YAQR-AHGLKR 136
V KN FA++RPPGHHA P P GFC+F NV++ AR QR +KR
Sbjct: 174 CTAVVTGQVKN------AFAVVRPPGHHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKR 227
Query: 137 VFIIDFDVHHGNGTNDAFYDDPDIFFLSTH--QDGS-YPGT--GKIDEVGRGDGEGSTLN 191
V I+D+D+HHGNGT AFYDDP++ ++S H ++G YPGT G + G G G G T+N
Sbjct: 228 VLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVN 287
Query: 192 LPLP-GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYML 250
+P G GD F V++P A F PDL++VS G+DA D + T Y
Sbjct: 288 IPWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAY--- 344
Query: 251 AANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP 294
A++ Q+ L + LEGGYNL+S+S S ++ LG P
Sbjct: 345 -AHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSLLGIP 387
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 154/308 (50%), Gaps = 17/308 (5%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALV 80
A +++ VH+ Y+ +E + +L + Y ++ + A+G+ + LV
Sbjct: 136 AEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYSCACLASGSVLRLV 195
Query: 81 DSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFII 140
D+V+ A G A+IRPPGHHA G+C+F +VA+AARYAQ+ H ++RV I+
Sbjct: 196 DAVLGAEIRN-----GMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIV 250
Query: 141 DFDVHHGNGTNDAFYDDPDIFFLSTH---QDGSYP--GTGKIDEVGRGDGEGSTLNLPLP 195
D+DVHHG GT F DP + + S H Q +P G G G+G T+N+P
Sbjct: 251 DWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWN 310
Query: 196 G-GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANI 254
G D F V++P A F+P L+LV+AG+DA DP + T + A +
Sbjct: 311 QVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGF----AQL 366
Query: 255 KQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKV 314
L L G + + LEGGYNL +L+ V+ S LG+P ++P A V
Sbjct: 367 THLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPM--LESPGAPCRSAQASV 424
Query: 315 KQAIERVK 322
A+E ++
Sbjct: 425 SCALEALE 432
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 144/277 (51%), Gaps = 16/277 (5%)
Query: 20 PASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIAL 79
PA+ ++ + H+ YV L +++ Y +TF + A GA L
Sbjct: 530 PATEAELLTCHSAEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRL 589
Query: 80 VDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLK-RVF 138
V++V++ G A++RPPGHHA GFC F +VA+AAR+AQ G R+
Sbjct: 590 VEAVLSGEVLN-----GAAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQTISGHALRIL 644
Query: 139 IIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSY---PGTGKIDEVGRGDGEGSTLNLP 193
I+D+DVHHGNGT F DDP + ++S H+ G++ G ++GR G G T+N+
Sbjct: 645 IVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVA 704
Query: 194 LPGGS-GDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 252
G GD +H +++P A F P+L+LVSAG+DA DPL Q + Y A
Sbjct: 705 WNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGY----A 760
Query: 253 NIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRA 289
++ L L R + LEGGYNL S+S S+A R+
Sbjct: 761 HLTHLLMGLASGRIILILEGGYNLTSISESMAACTRS 797
>sp|Q94EJ2|HDA8_ARATH Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1
Length = 377
Score = 161 bits (407), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 153/312 (49%), Gaps = 17/312 (5%)
Query: 20 PASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIAL 79
PA V ++ H Y+ L +A D++ ++ E + T+ + +++ +L AAG ++
Sbjct: 69 PAIVSELLMFHTSEYIEKLVEA-DKSGER----CEIAAGTFMSPGSWEAALLAAGTTLSA 123
Query: 80 VDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFI 139
+ ++ + +AL+RPPGHH+ P G+C N A+A + A + RV +
Sbjct: 124 MQHILDCHGK-----IAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSGSCSRVAV 178
Query: 140 IDFDVHHGNGTNDAFYDDPDIFFLSTHQD-----GSYPGTGKIDEVGRGDGEGSTLNLPL 194
ID DVH+GNGT + FY + +S H + S+P G IDE+G G G LN+PL
Sbjct: 179 IDIDVHYGNGTAEGFYTSDKVLTVSLHMNHGSWGSSHPQKGSIDELGEDVGLGYNLNVPL 238
Query: 195 PGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANI 254
P G+GD +E++VP +RF PD++++ G D+ DP T Y + +
Sbjct: 239 PNGTGDRGYEYAMNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTMNGYRRIGQIM 298
Query: 255 KQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKV 314
+ +A++ R + EGGY++ +Y + L P +P Y E A
Sbjct: 299 RGVAEEHSHGRLLMVQEGGYHVTYAAYCLHAMLEGVLKIPEP--HLSDPIAYYPEEEANA 356
Query: 315 KQAIERVKHIHS 326
A+E +K H+
Sbjct: 357 VAAVESIKTYHT 368
>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2
Length = 552
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 118/202 (58%), Gaps = 9/202 (4%)
Query: 96 GFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 155
GFAL+RPPGHHA + MGFC+ N A+AA AQ A K+V I+D+DVHHGNGT + F
Sbjct: 267 GFALVRPPGHHAGVRHAMGFCLHNNAAVAALVAQAAG-AKKVLIVDWDVHHGNGTQEIFE 325
Query: 156 DDPDIFFLSTHQDGS---YPGTGKIDEVGRGDGEGSTLNLPLP-GGSGDTAMRTVFHEVI 211
+ + ++S H+ YPGTG DEVG GEG +N+P GG GD F V+
Sbjct: 326 QNKSVLYISLHRHEGGNFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVV 385
Query: 212 VPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLE 271
+P A F PD +++SAG+DA DPL T Y + + Q+ DLCG + + LE
Sbjct: 386 LPIASAFSPDFVIISAGFDAARGDPLGCCDVTPAGY----SRMTQMLGDLCGGKMLVILE 441
Query: 272 GGYNLNSLSYSVADSFRAFLGE 293
GGYNL S+S S + LGE
Sbjct: 442 GGYNLRSISASATAVIKVLLGE 463
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1
Length = 660
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 141/271 (52%), Gaps = 23/271 (8%)
Query: 60 YATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFG 119
Y + + + AAG+ + L + V + GFA++RPPGHHA MGFC+F
Sbjct: 117 YLNGGSSEAAYLAAGSVVKLAEKVAEGELD-----CGFAIVRPPGHHAEADEAMGFCLFN 171
Query: 120 NVAIAARYAQRAH---GLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQD---GSYPG 173
NVA+AA + G+K++ I+D+DVHHGNGT F+ DP + F S H+ G YP
Sbjct: 172 NVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGGFYPA 231
Query: 174 --TGKIDEVGRGDGEGSTLNLPLPGG-SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYD 230
G + VG G GEG +N+P G GD + +++P A+ F PD+I +SAG+D
Sbjct: 232 GDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFD 291
Query: 231 AHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAF 290
A + DPL T Y ++ + + A+ + V LEGGYNL+S++ S +
Sbjct: 292 AAINDPLGGCCVTPYGYSVMLKKLMEFAQ----GKIVLALEGGYNLDSIAKSSLACVQVL 347
Query: 291 LGEPSKASEFDNPAILYE-EPSAKVKQAIER 320
L + + P Y E + +V QA+ +
Sbjct: 348 LED----KQIQGPPEAYPFESTWRVIQAVRK 374
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2
Length = 1011
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 141/267 (52%), Gaps = 25/267 (9%)
Query: 72 AAGAGIALVDSVVAAS-KNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQR 130
A G I L V + KN GFA++RPPGHHA MGFC F +VAI A+Y +
Sbjct: 754 AVGCVIELASKVASGELKN------GFAVVRPPGHHAEESTAMGFCFFNSVAITAKYLRD 807
Query: 131 AHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEG 187
+ ++ I+D DVHHGNGT AFY DP I ++S H+ +G+ +PG+G +EVG G GEG
Sbjct: 808 QLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGSGAPNEVGTGLGEG 867
Query: 188 STLNLPLPGG----SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDA---HVLDPLASL 240
+N+ GG GD F ++ P A+ F PD++LVSAG+DA H PL
Sbjct: 868 YNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHT-PPLGGY 926
Query: 241 QFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEF 300
+ T + L + LA R V LEGG++L ++ + A LG +
Sbjct: 927 KVTAKCFGHLTKQLMTLAD----GRVVLALEGGHDLTAICDASEACVNALLGNELEPLAE 982
Query: 301 DNPAILYEEPSAKVKQAIERVKHIHSL 327
D IL++ P+ +++++ I S+
Sbjct: 983 D---ILHQSPNMNAVISLQKIIEIQSM 1006
>sp|Q57955|Y535_METJA Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0535 PE=3 SV=1
Length = 343
Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 157/321 (48%), Gaps = 30/321 (9%)
Query: 15 LKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGS-----GPTYATATTFQES 69
L + DDI + ++ ++ + + R II + S G TY T +
Sbjct: 34 LNSLKSNGFDDIVLIEGKSTINEILEIHSRDYVYSIINLSKSFNYYDGDTYLCDRTLDAA 93
Query: 70 LAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKG------PMGFCVFGNVAI 123
L A ++V A K+R L FAL RPPGHHA G GFC+F N+A
Sbjct: 94 LTAFKLA---KEAVKLALKDRD---LYFALTRPPGHHAGISGRALGAMSNGFCIFNNIAG 147
Query: 124 AARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRG 183
AAR A+ +K+V IIDFDVHHGNGT + F++D + + HQ G YPGTG I ++G
Sbjct: 148 AARLAKNY--MKKVIIIDFDVHHGNGTQEIFWNDNRVIHIDFHQRGIYPGTGDILDIGGE 205
Query: 184 DGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 243
+ +G+ +NLP P S D ++E++ P F PD +LVSAG+DA + D LAS+ T
Sbjct: 206 EAKGTKINLPFPAHSTDADYIFAWNEIVEPILNYFSPDTVLVSAGFDAFINDGLASMDLT 265
Query: 244 TGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNP 303
Y + A L G LEGGY++ L Y+ ++ ++
Sbjct: 266 ETFYRFVGAK-------LSGYSVTAVLEGGYSI-GLKYAPPAFLDGYVDAKDVLDNLEDY 317
Query: 304 AILYEEPSAKVKQAIERVKHI 324
++ S +VK ++ VK I
Sbjct: 318 TVI---NSNEVKSMVKNVKKI 335
>sp|Q8WUI4|HDAC7_HUMAN Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2
Length = 952
Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 171/332 (51%), Gaps = 37/332 (11%)
Query: 21 ASVDDIASVHARAYV--------SGLE----KAMDRASQQGIILIEGSGPTYATATTFQE 68
AS++++ SVH+ +V S L+ K +Q+ +++ G T T + E
Sbjct: 572 ASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNE 631
Query: 69 ---SLAAAGAGIALVD-SVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIA 124
S AA A ++ D + AS+ + GFA++RPPGHHA MGFC F +VAIA
Sbjct: 632 LHSSNAARWAAGSVTDLAFKVASRELKN---GFAVVRPPGHHADHSTAMGFCFFNSVAIA 688
Query: 125 ARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGS-YPGTGKIDEVG 181
R Q+ ++ I+D+DVHHGNGT FY DP + ++S H+ DG+ +PG+G +DEVG
Sbjct: 689 CRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVG 748
Query: 182 RGDGEGSTLNLPLPGG----SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPL 237
G GEG +N+ GG GD F V++P A+ F PDL+LVSAG+DA P
Sbjct: 749 AGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHP- 807
Query: 238 ASLQFTTGTYYMLAAN---IKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP 294
G Y++ A + Q +L G V LEGG++L ++ + A LG
Sbjct: 808 ----APLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLG-- 861
Query: 295 SKASEFDNPAILYEEPSAKVKQAIERVKHIHS 326
++ ++P+ +++E V +HS
Sbjct: 862 NRVDPLSEEG-WKQKPNLNAIRSLEAVIRVHS 892
>sp|P72702|Y245_SYNY3 Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0245 PE=3 SV=1
Length = 304
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/196 (45%), Positives = 117/196 (59%), Gaps = 10/196 (5%)
Query: 97 FALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYD 156
F L RPPGHHAI MGFC+ NVAIAA YA G++RV I+D+DVHHGNGT
Sbjct: 117 FVLARPPGHHAIRNTGMGFCLLNNVAIAAHYALTRPGVERVAILDWDVHHGNGTEALVDH 176
Query: 157 DPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPL-PGGSGDTAMRTVFHEVIVPCA 215
+P IF+ S HQ YPGTG + G+ D + LN+PL PGG G R F ++P
Sbjct: 177 NPRIFYCSLHQFPCYPGTGAAGDRGQHD---NVLNIPLKPGGDGKV-YREAFEHKVLPFL 232
Query: 216 QRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 275
++ KPDL+LVSAGYDA+ DPLA + Y M+ + +++ V LEGGY+
Sbjct: 233 RQVKPDLLLVSAGYDANHSDPLAYMNLIPEDYGMMTHYLMEIS-----PYPVLGLEGGYH 287
Query: 276 LNSLSYSVADSFRAFL 291
L SL+ SV ++ + L
Sbjct: 288 LPSLAKSVVETLKPLL 303
>sp|Q8C2B3|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2
Length = 938
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 171/331 (51%), Gaps = 37/331 (11%)
Query: 21 ASVDDIASVHARAYV--------SGLE----KAMDRASQQGIILIEGSGPTYATATTFQE 68
AS++++ SVH+ +V S L+ K +Q+ +++ G T T + E
Sbjct: 559 ASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDTDTIWNE 618
Query: 69 ---SLAAAGAGIALVD-SVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIA 124
S AA A ++ D + AS+ + GFA++RPPGHHA MGFC F +VAIA
Sbjct: 619 LHSSNAARWAAGSVTDLAFKVASRELKN---GFAVVRPPGHHADHSTAMGFCFFNSVAIA 675
Query: 125 ARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGS-YPGTGKIDEVG 181
R Q+ ++ I+D+DVHHGNGT FY DP + ++S H+ DG+ +PG+G +DEVG
Sbjct: 676 CRQLQQHGKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVG 735
Query: 182 RGDGEGSTLNLPLPGG----SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPL 237
G GEG +N+ GG GD F V++P A+ F PDL+LVSAG+DA P
Sbjct: 736 TGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFAPDLVLVSAGFDAAEGHP- 794
Query: 238 ASLQFTTGTYYMLAAN---IKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP 294
G Y++ A + Q +L G V LEGG++L ++ + A LG
Sbjct: 795 ----APLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLG-- 848
Query: 295 SKASEFDNPAILYEEPSAKVKQAIERVKHIH 325
+K + ++P+ +++E V +H
Sbjct: 849 NKVDPLSEES-WKQKPNLSAIRSLEAVVRVH 878
>sp|Q613L4|HDA4_CAEBR Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1
Length = 892
Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 15/239 (6%)
Query: 96 GFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLK--RVFIIDFDVHHGNGTNDA 153
GFA IRPPGHHA + +GFC F NVA+ A+ Q + ++ ++ IID+DVHHGNGT +
Sbjct: 618 GFACIRPPGHHAEAEQALGFCFFNNVAVTAKVLQAKYPVQCAKIAIIDWDVHHGNGTQLS 677
Query: 154 FYDDPDIFFLSTHQDGS---YPGTGKIDEVGRGDGEGSTLNLPLPGG-SGDTAMRTVFHE 209
F DDP++ ++S H+ + +PGTG + E+G+G G+G ++N+P GG D +
Sbjct: 678 FDDDPNVLYMSLHRHDNGNFFPGTGSVTEIGKGAGKGFSVNIPFSGGVMKDAEYLAAWRT 737
Query: 210 VIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRC 266
V+ P F PD ILVSAG+DA HV + L + T + + + A +
Sbjct: 738 VVEPVLASFCPDFILVSAGFDACHGHV-NALGGYEITPEMFGYMTKCLLSYAN----GKV 792
Query: 267 VFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIH 325
V LEGGYNL+S+S + +A +GE A + L P+ + +++V IH
Sbjct: 793 VLALEGGYNLDSISAAAEQCVQALIGESDDAGRLCTDS-LENLPNQSALETLQKVIAIH 850
>sp|Q8LRK8|HDA18_ARATH Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1
Length = 682
Score = 154 bits (389), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 126/232 (54%), Gaps = 18/232 (7%)
Query: 60 YATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFG 119
Y + + + AAG+ + + + V + GFA++RPPGHHA MGFC+F
Sbjct: 150 YLNGGSSEAAYLAAGSVVKVAEKVAEGELD-----CGFAIVRPPGHHAESDEAMGFCLFN 204
Query: 120 NVAIAARYAQRAH---GLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQD--GS-YP- 172
NVA+AA + +K++ I+D+D+HHGNGT F+ D + S H+ GS YP
Sbjct: 205 NVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDSRVLIFSVHRHDHGSFYPF 264
Query: 173 -GTGKIDEVGRGDGEGSTLNLPLP-GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYD 230
G + VG G GEG +N+P GG GD V++ +++P + FKPD+IL+SAG+D
Sbjct: 265 GDDGDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVTKEFKPDIILLSAGFD 324
Query: 231 AHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYS 282
A + DPL T Y ++ + + A + V LEGGYNL SL S
Sbjct: 325 AAIGDPLGGCCVTPYGYSVMLKKLMEFAH----GKIVLALEGGYNLESLGKS 372
>sp|Q9Z2V6|HDAC5_MOUSE Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2
Length = 1113
Score = 150 bits (380), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 136/241 (56%), Gaps = 18/241 (7%)
Query: 96 GFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 155
GFA+IRPPGHHA MGFC F +VAI A+ Q+ + +V I+D+D+HHGNGT AFY
Sbjct: 814 GFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLSVGKVLIVDWDIHHGNGTQQAFY 873
Query: 156 DDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGSTLNLPLPGGS----GDTAMRTVFH 208
+DP + ++S H+ +G+ +PG+G +EVG G G G +N+ GG GD T F
Sbjct: 874 NDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFR 933
Query: 209 EVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSR 265
V++P AQ F PD++LVSAG+DA H L PL T + L + LA G R
Sbjct: 934 TVVMPIAQEFSPDVVLVSAGFDAVEGH-LSPLGGYSVTARCFGHLTRQLMTLA----GGR 988
Query: 266 CVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIH 325
V LEGG++L ++ + A L S + + A+L ++PS +E+V I
Sbjct: 989 VVLALEGGHDLTAICDASEACVSALL---SVELQPLDEAVLQQKPSVNAVATLEKVIEIQ 1045
Query: 326 S 326
S
Sbjct: 1046 S 1046
>sp|Q569C4|HDA10_RAT Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1
Length = 588
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 145/268 (54%), Gaps = 15/268 (5%)
Query: 10 SEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQES 69
E + + AS +++ VH+ Y++ ++K ++ L + Y TF +
Sbjct: 44 EERCQCLSVCEASEEELGLVHSPEYIALVQKTQTLDKEELHTLSKQYDAVYFHPDTFHCA 103
Query: 70 LAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQ 129
AAGA + LVD+V+ + + G AL+RPPGHH+ GFCVF NVAIAAR+A+
Sbjct: 104 RLAAGAALRLVDAVLTGAVHN-----GVALVRPPGHHSQRAAANGFCVFNNVAIAARHAK 158
Query: 130 RAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ---DGSYP--GTGKIDEVGRGD 184
+ +GL+R+ I+D+DVHHG G F DDP + + S H+ +P D VGRG
Sbjct: 159 QKYGLQRILIVDWDVHHGQGIQYIFEDDPSVLYFSWHRYEHGNFWPFLPESDADTVGRGR 218
Query: 185 GEGSTLNLPLPG-GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 243
G+G T+NLP G G+ F V++P A F P+L+LVSAG+D+ + DP +Q T
Sbjct: 219 GQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQAT 278
Query: 244 TGTYYMLAANIKQLAKDLCGSRCVFFLE 271
+ A++ QL + L G R LE
Sbjct: 279 PECF----AHLTQLLQVLAGGRICAVLE 302
>sp|Q54VQ7|HDA22_DICDI Type-2 histone deacetylase 2 OS=Dictyostelium discoideum GN=hdaC PE=2
SV=1
Length = 1704
Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats.
Identities = 90/250 (36%), Positives = 128/250 (51%), Gaps = 23/250 (9%)
Query: 59 TYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKG------P 112
T+ + + + +L A+G+ A VDSV + R F IRPPGHHA G
Sbjct: 1171 TFVSHRSIKAALRASGSVCAAVDSVSRSGYTR-----AFCAIRPPGHHAGRYGRTSDAPS 1225
Query: 113 MGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTH----QD 168
G+C+ NVAI A+YA G R+ ++DFDVHHGNGT + D + F+S H +
Sbjct: 1226 QGYCLINNVAIGAKYASLTAGYSRIAVVDFDVHHGNGTQEILSGDDNFLFISIHVCDEKR 1285
Query: 169 GSYPGTGK----IDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLIL 224
YPGTG+ IDEV G +G+ LN+ L +G + I+P + +KP LI
Sbjct: 1286 YFYPGTGQDVGDIDEVS-GQFDGNILNIGLKRNTGSAVFLQQWMNKIIPRLEAYKPQLIF 1344
Query: 225 VSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNL---NSLSY 281
+SAG+D H DP L+ Y+++ IK +A C R + LEGGY + NSL
Sbjct: 1345 LSAGFDGHKDDPTNGLKLNEEDYFVITKMIKTVAFKYCKGRIISVLEGGYGIEKTNSLQR 1404
Query: 282 SVADSFRAFL 291
V +A +
Sbjct: 1405 CVNSHLKALI 1414
>sp|O17323|HDA4_CAEEL Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=3
Length = 869
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 140/276 (50%), Gaps = 22/276 (7%)
Query: 60 YATATTFQESLAAAGAGIALVDSVVAAS-KNRPDPPLGFALIRPPGHHAIPKGPMGFCVF 118
+ A+T + AAG I L V KN GFA IRPPGHHA + MGFC F
Sbjct: 567 FNDASTQTAARLAAGTLIELSSQVAEGRLKN------GFACIRPPGHHAEHEQAMGFCFF 620
Query: 119 GNVAIAARYAQRAHGLK--RVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGS---YPG 173
NVA+A + Q + + ++ IID+DVHHGNGT +F +DP++ ++S H+ +PG
Sbjct: 621 NNVAVAVKVLQTKYPAQCAKIAIIDWDVHHGNGTQLSFENDPNVLYMSLHRHDKGNFFPG 680
Query: 174 TGKIDEVGRGDGEGSTLNLPLPGG-SGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAH 232
TG + EVG+ D +G T+N+P G D + VI P F PD I+VSAG+DA
Sbjct: 681 TGSVTEVGKNDAKGLTVNVPFSGDVMRDPEYLAAWRTVIEPVMASFCPDFIIVSAGFDAC 740
Query: 233 VLDPLASLQFTTGTYYMLAANIKQLAKDL---CGSRCVFFLEGGYNLNSLSYSVADSFRA 289
P A G Y + + K L + V LEGGY+L S+S + +A
Sbjct: 741 HGHPNA-----LGGYEVTPEMFGYMTKSLLNYASGKVVLALEGGYDLKSISEAAQQCVQA 795
Query: 290 FLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIH 325
+GE A + A L P+ + +++V IH
Sbjct: 796 LIGESDDAGRLSSVA-LESLPNPSAVETLQKVIAIH 830
>sp|Q9UQL6|HDAC5_HUMAN Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=2
Length = 1122
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 134/241 (55%), Gaps = 18/241 (7%)
Query: 96 GFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 155
GFA+IRPPGHHA MGFC F +VAI A+ Q+ + +V I+D+D+HHGNGT AFY
Sbjct: 823 GFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIHHGNGTQQAFY 882
Query: 156 DDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGSTLNLPLPGGS----GDTAMRTVFH 208
+DP + ++S H+ +G+ +PG+G +EVG G G G +N+ GG GD T F
Sbjct: 883 NDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFR 942
Query: 209 EVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSR 265
V++P A F PD++LVSAG+DA H L PL T + L + LA G R
Sbjct: 943 TVVMPIAHEFSPDVVLVSAGFDAVEGH-LSPLGGYSVTARCFGHLTRQLMTLA----GGR 997
Query: 266 CVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIH 325
V LEGG++L ++ + A L + D A+L ++P+ +E+V I
Sbjct: 998 VVLALEGGHDLTAICDASEACVSALLS--VELQPLDE-AVLQQKPNINAVATLEKVIEIQ 1054
Query: 326 S 326
S
Sbjct: 1055 S 1055
>sp|Q5R902|HDAC5_PONAB Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1
Length = 1122
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 134/241 (55%), Gaps = 18/241 (7%)
Query: 96 GFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFY 155
GFA+IRPPGHHA MGFC F +VAI A+ Q+ + +V I+D+D+HHGNGT AFY
Sbjct: 823 GFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIHHGNGTQQAFY 882
Query: 156 DDPDIFFLSTHQ--DGS-YPGTGKIDEVGRGDGEGSTLNLPLPGGS----GDTAMRTVFH 208
+DP + ++S H+ +G+ +PG+G +EVG G G G +N+ GG GD T F
Sbjct: 883 NDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWIGGVDPPIGDVEYLTAFR 942
Query: 209 EVIVPCAQRFKPDLILVSAGYDA---HVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSR 265
V++P A F PD++LVSAG+DA H L PL T + L + LA G R
Sbjct: 943 TVVMPIAHEFSPDVVLVSAGFDAVEGH-LSPLGGYSVTARCFGHLTRQLMTLA----GGR 997
Query: 266 CVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIH 325
V LEGG++L ++ + A L + D A+L ++P+ +E+V I
Sbjct: 998 VVLALEGGHDLTAICDASEACVSALLS--VELQPLDE-AVLQQKPNINAVATLEKVIEIQ 1054
Query: 326 S 326
S
Sbjct: 1055 S 1055
>sp|Q56195|ACUC_STAXY Acetoin utilization protein AcuC OS=Staphylococcus xylosus GN=acuC
PE=3 SV=1
Length = 385
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 30/309 (9%)
Query: 1 MELTSEFRGSEIIELKN---FSP--ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEG 55
++LT+E E+ +LK SP A+ D+++ +HA Y+ + R + GI L E
Sbjct: 32 LKLTTELL-MELGQLKQHHIISPRIATDDELSLIHAYDYIQAI-----RHASHGI-LSEN 84
Query: 56 SGPTYAT--ATTFQ------ESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHA 107
Y T Q S G + L D +++ + LG L HH+
Sbjct: 85 EAKKYGLDGEDTLQFRMMHKHSARIVGGALNLADQIMSGTLTN-GCHLGGGL-----HHS 138
Query: 108 IPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ 167
+P GFC++ +VAI Y + + +RV ID D HHG+GT +FY + S H+
Sbjct: 139 LPGRANGFCIYNDVAITISYLMQKYN-QRVLCIDTDAHHGDGTQWSFYTNDQALIYSIHE 197
Query: 168 DGSY--PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILV 225
G + PG+G E G G G T+N+PL + D + VF + I P FKPD+I+
Sbjct: 198 TGKFLFPGSGHYTERGAEKGFGYTVNIPLEPYTEDQSFLDVFKQTIEPVVASFKPDIIVS 257
Query: 226 SAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNL-NSLSYSVA 284
G D H LDPL + T T Y + +K LA + + F GGYN+ + + +
Sbjct: 258 VHGVDVHYLDPLTHMSCTLNTLYEIPYIVKSLADTYTQGKVIMFGGGGYNIWKVVPRAWS 317
Query: 285 DSFRAFLGE 293
F A +GE
Sbjct: 318 HVFLALIGE 326
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 21 ASVDDIASVHARAYVSGLEKAM------DRASQQGIILIEGSGPTYATATTFQESLAAAG 74
A+ D++ +H YV ++ A D A + G+ E S + + S G
Sbjct: 56 ATDDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENSQFKHM----HRHSATIVG 111
Query: 75 AGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGL 134
+ L D ++ + K LG L HHA P GFC++ ++AI A+Y + +
Sbjct: 112 GALTLAD-LIMSGKVLNGCHLGGGL-----HHAQPGRASGFCIYNDIAITAQYLAKEYN- 164
Query: 135 KRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY--PGTGKIDEVGRGDGEGSTLNL 192
+RV IID D HHG+GT +FY D + S H+ G + PG+G E G G G T+N+
Sbjct: 165 QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNV 224
Query: 193 PLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 252
PL + D + F + P + FKPD+IL G D H DPL L T + Y +
Sbjct: 225 PLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPY 284
Query: 253 NIKQLAKDLCGSRCVFFLEGGYNL 276
+K LA + + F GGYN+
Sbjct: 285 FVKYLADSYTNGKVIMFGGGGYNI 308
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 21 ASVDDIASVHARAYVSGLEKAM------DRASQQGIILIEGSGPTYATATTFQESLAAAG 74
A+ D++ +H YV ++ A D A + G+ E S + + S G
Sbjct: 56 ATDDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENSQFKHM----HRHSATIVG 111
Query: 75 AGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGL 134
+ L D ++ + K LG L HHA P GFC++ ++AI A+Y + +
Sbjct: 112 GALTLAD-LIMSGKVLNGCHLGGGL-----HHAQPGRASGFCIYNDIAITAQYLAKEYN- 164
Query: 135 KRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY--PGTGKIDEVGRGDGEGSTLNL 192
+RV IID D HHG+GT +FY D + S H+ G + PG+G E G G G T+N+
Sbjct: 165 QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNV 224
Query: 193 PLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 252
PL + D + F + P + FKPD+IL G D H DPL L T + Y +
Sbjct: 225 PLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPY 284
Query: 253 NIKQLAKDLCGSRCVFFLEGGYNL 276
+K LA + + F GGYN+
Sbjct: 285 FVKYLADSYTNGKVIMFGGGGYNI 308
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 124/264 (46%), Gaps = 19/264 (7%)
Query: 21 ASVDDIASVHARAYVSGLEKAM------DRASQQGIILIEGSGPTYATATTFQESLAAAG 74
A+ D++ +H YV ++ A D A + G+ E + + S G
Sbjct: 56 ATDDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHM----HRHSATIVG 111
Query: 75 AGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGL 134
+ L D ++ + K LG L HHA P GFC++ ++AI A+Y + +
Sbjct: 112 GALTLAD-LIMSGKVLNGCHLGGGL-----HHAQPGRASGFCIYNDIAITAQYLAKEYN- 164
Query: 135 KRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY--PGTGKIDEVGRGDGEGSTLNL 192
+RV IID D HHG+GT +FY D + S H+ G + PG+G E G G G T+N+
Sbjct: 165 QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNV 224
Query: 193 PLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 252
PL + D + F + P + FKPD+IL G D H DPL L T + Y +
Sbjct: 225 PLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPY 284
Query: 253 NIKQLAKDLCGSRCVFFLEGGYNL 276
+K LA + + F GGYN+
Sbjct: 285 FVKYLADSYTNGKVIMFGGGGYNI 308
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 125/264 (47%), Gaps = 19/264 (7%)
Query: 21 ASVDDIASVHARAYVSGLEKAM------DRASQQGIILIEGSGPTYATATTFQESLAAAG 74
A+ D++ +H YV ++ A D A + G+ E + + S G
Sbjct: 56 ATDDELMLIHKYDYVEAIKHASHGIISEDEAMKYGLNDEENGQFKHM----HRHSATIVG 111
Query: 75 AGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGL 134
+ L D ++ + K LG L HHA P GFC++ ++AI A+Y + +
Sbjct: 112 GALTLAD-LIMSGKALNGCHLGGGL-----HHAQPGRASGFCIYNDIAITAQYLAKEYN- 164
Query: 135 KRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY--PGTGKIDEVGRGDGEGSTLNL 192
+RV IID D HHG+GT +FY D + S H+ G + PG+G E G G G T+N+
Sbjct: 165 QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNV 224
Query: 193 PLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 252
PL + D++ F + P + FKPD+IL G D H DPL L T + Y +
Sbjct: 225 PLEPYTEDSSFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPY 284
Query: 253 NIKQLAKDLCGSRCVFFLEGGYNL 276
+K LA + + F GGYN+
Sbjct: 285 FVKYLADTYTNGKIIMFGGGGYNI 308
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 124/264 (46%), Gaps = 19/264 (7%)
Query: 21 ASVDDIASVHARAYVSGLEKAM------DRASQQGIILIEGSGPTYATATTFQESLAAAG 74
A+ D++ +H YV ++ A D A + G+ E + + S G
Sbjct: 56 ATGDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHM----HRHSATIVG 111
Query: 75 AGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGL 134
+ L D ++ + K LG L HHA P GFC++ ++AI A+Y + +
Sbjct: 112 GALTLAD-LIMSGKVLNGCHLGGGL-----HHAQPGRASGFCIYNDIAITAQYIAKEYN- 164
Query: 135 KRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY--PGTGKIDEVGRGDGEGSTLNL 192
+RV IID D HHG+GT +FY D + S H+ G + PG+G E G G G T+N+
Sbjct: 165 QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNV 224
Query: 193 PLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 252
PL + D + F + P + FKPD+IL G D H DPL L T + Y +
Sbjct: 225 PLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPY 284
Query: 253 NIKQLAKDLCGSRCVFFLEGGYNL 276
+K LA + + F GGYN+
Sbjct: 285 FVKYLADSYTNGKVIMFGGGGYNI 308
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 124/264 (46%), Gaps = 19/264 (7%)
Query: 21 ASVDDIASVHARAYVSGLEKAM------DRASQQGIILIEGSGPTYATATTFQESLAAAG 74
A+ D++ +H YV ++ A D A + G+ E + + S G
Sbjct: 56 ATGDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHM----HRHSATIVG 111
Query: 75 AGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGL 134
+ L D ++ + K LG L HHA P GFC++ ++AI A+Y + +
Sbjct: 112 GALTLAD-LIMSGKVLNGCHLGGGL-----HHAQPGRASGFCIYNDIAITAQYIAKEYN- 164
Query: 135 KRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY--PGTGKIDEVGRGDGEGSTLNL 192
+RV IID D HHG+GT +FY D + S H+ G + PG+G E G G G T+N+
Sbjct: 165 QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNV 224
Query: 193 PLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAA 252
PL + D + F + P + FKPD+IL G D H DPL L T + Y +
Sbjct: 225 PLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPY 284
Query: 253 NIKQLAKDLCGSRCVFFLEGGYNL 276
+K LA + + F GGYN+
Sbjct: 285 FVKYLADSYTNGKVIMFGGGGYNI 308
>sp|P39067|ACUC_BACSU Acetoin utilization protein AcuC OS=Bacillus subtilis (strain 168)
GN=acuC PE=3 SV=1
Length = 387
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
Query: 105 HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLS 164
HH GFC++ + A+A +Y Q+ + RV ID D HHG+G FYD+PD+ LS
Sbjct: 132 HHGFRGRASGFCIYNDSAVAIQYIQKKYS-ARVLYIDTDAHHGDGVQFTFYDNPDVCTLS 190
Query: 165 THQDGSY--PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDL 222
H+ G Y PGTG+I E G G G G + N+PL + D + + A F+PD+
Sbjct: 191 IHETGRYLFPGTGQIQEKGSGKGYGYSFNIPLDAFTEDDSFLEAYRTAASEVAAYFEPDV 250
Query: 223 ILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNL 276
I+ G DAH DPL L T Y + LA CG + + GGY++
Sbjct: 251 IISQNGADAHYYDPLTHLSATINIYEEIPRLAHTLAHQYCGGKWIAVGGGGYDI 304
>sp|Q48935|APHA_MYCRA Acetylpolyamine aminohydrolase OS=Mycoplana ramosa GN=aphA PE=1
SV=1
Length = 341
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 134/304 (44%), Gaps = 52/304 (17%)
Query: 23 VDDIASVHARAYVSGLEKAMDRASQQGI-------------------ILIEGSGPTYATA 63
++ + VH Y++ LE A DR G IEG Y A
Sbjct: 56 LETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNA 115
Query: 64 T-------TFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFC 116
T++ +L++ + I D + A K F+L RPPGHHA G+C
Sbjct: 116 AETAISPGTWEAALSSMASAIDGADLIAAGHKA------AFSLCRPPGHHAGIDMFGGYC 169
Query: 117 VFGNVAIAARYAQRA--HGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQD--GSYP 172
N A+AA QR G K++ I+D D HHGNGT D FY+ D+FF S H D ++P
Sbjct: 170 FINNAAVAA---QRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFP 226
Query: 173 G-TGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQR---FKPDLILVSAG 228
G +E G+G G G+T N P+ G +V+ E + +R F + I+VS G
Sbjct: 227 HFLGYAEETGKGAGAGTTANYPM----GRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLG 282
Query: 229 YDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFR 288
D DP++ + T+ Y + I G + +EGGY + + +VA+ +
Sbjct: 283 VDTFEQDPISFFKLTSPDYITMGRTIAA-----SGVPLLVVMEGGYGVPEIGLNVANVLK 337
Query: 289 AFLG 292
G
Sbjct: 338 GVAG 341
>sp|Q3JUN4|APHA_BURP1 Acetylpolyamine aminohydrolase OS=Burkholderia pseudomallei (strain
1710b) GN=aphA PE=1 SV=1
Length = 341
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 94 PLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDA 153
P +AL RPPGHHA GFC N AIAA+ + H RV ++D D+HHG G +
Sbjct: 145 PAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHA--RVAVLDTDMHHGQGIQEI 202
Query: 154 FYDDPDIFFLSTHQDGS--YPGT-GKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEV 210
FY D+ ++S H D + YP G DE G G+G G +NLP+P GS + A +
Sbjct: 203 FYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDA 262
Query: 211 IVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFL 270
+ +RF PD +++S G+D + DP + + TT + L I L V
Sbjct: 263 LREL-RRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLP-----TVIVQ 316
Query: 271 EGGYNLNSLSYSVADSFRAF 290
EGGY++ SL + F F
Sbjct: 317 EGGYHIESLEANARSFFGGF 336
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 105 HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLS 164
HHA + GFC ++A+AA + H +RV ID DVHHG+G + FY + S
Sbjct: 137 HHAKKREASGFCYVNDIALAALELLKYH--QRVLYIDIDVHHGDGVEEFFYTTDRVMTCS 194
Query: 165 THQDGSY-PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLI 223
H+ G Y PGTG I + G G G+ +N+PL G D + +VF VI Q F+P+ +
Sbjct: 195 FHKFGEYFPGTGHIKDTGIGTGKNYAVNVPLRDGIDDESYESVFKPVISHIMQWFRPEAV 254
Query: 224 LVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQL 257
++ G D+ D L + + M +K
Sbjct: 255 ILQCGTDSLAGDRLGCFNLSMKGHSMCVDFVKSF 288
>sp|P53096|HOS2_YEAST Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HOS2 PE=1 SV=1
Length = 452
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 20/238 (8%)
Query: 3 LTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKA-------MDRASQQGIILIEG 55
L S + +I++L A+ D++ H+ YV+ L K + R + + I
Sbjct: 58 LVSSYGLHKIMDLYETRSATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLENFN-IGD 116
Query: 56 SGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGF 115
P + + A +D+ N+ D + ++ HHA P GF
Sbjct: 117 DCPIFQNLYDYTTLYTGAS-----LDATRKLINNQSDIAINWS---GGLHHAKKNSPSGF 168
Query: 116 CVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ-DGSY-PG 173
C ++ ++ R H R+ ID D+HHG+G +AFY +F LS H+ +G + PG
Sbjct: 169 CYVNDIVLSILNLLRYH--PRILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYNGEFFPG 226
Query: 174 TGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDA 231
TG + E+G G+ LN+PL G D + +F ++ P FKP LI+ G D+
Sbjct: 227 TGDLTEIGCDKGKHFALNVPLEDGIDDDSYINLFKSIVDPLIMTFKPTLIVQQCGADS 284
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 66 FQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAA 125
F+ +AG +A S V +K + D + +A HHA GFC ++ +A
Sbjct: 107 FEFCQLSAGGSVA---SAVKLNKQQTDIAVNWA---GGLHHAKKSEASGFCYVNDIVLAI 160
Query: 126 RYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGRGD 184
+ H +RV ID D+HHG+G +AFY + +S H+ G Y PGTG + ++G G
Sbjct: 161 LELLKYH--QRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGK 218
Query: 185 GEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 243
G+ +N PL G D + +F VI + F+P +++ G D+ D L T
Sbjct: 219 GKYYAVNYPLRDGIDDESYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLT 277
>sp|Q54X15|HDA21_DICDI Type-2 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaD PE=2
SV=1
Length = 1489
Score = 88.6 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 13/124 (10%)
Query: 57 GPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKG----- 111
G T+ + + + +AGA +D+V+ + F RPPGHHA G
Sbjct: 1188 GDTFVSKLSLHAAKRSAGATCQAIDNVMKGNVTS-----AFVAARPPGHHAGRDGLTSGT 1242
Query: 112 -PMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTH--QD 168
GFC+ +V I A+YAQ + L ++ IIDFDVHHGNGT + +D +FLS H ++
Sbjct: 1243 SSQGFCLLNHVCIGAKYAQLKYNLDKIAIIDFDVHHGNGTEEILSNDQGFYFLSIHMFEE 1302
Query: 169 GSYP 172
G YP
Sbjct: 1303 GFYP 1306
Score = 67.8 bits (164), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 186 EGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTG 245
+G+ +N+PL S ++ F +I+ ++P+LIL+S G+DAH+ D LASL
Sbjct: 1382 KGNIVNIPLDPKSSASSFLKAF-SIIIDKLNDYQPELILISCGFDAHMEDHLASLCLLEE 1440
Query: 246 TYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSL 279
Y + +++++A C R V LEGGYN+N+L
Sbjct: 1441 NYVEITRSLRRVADRWCKGRLVSILEGGYNINAL 1474
>sp|P28606|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A1628 PE=3 SV=2
Length = 300
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 87/191 (45%), Gaps = 21/191 (10%)
Query: 105 HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLS 164
HHA P GFC+ ++AIA R Q+ +R+ I+D DVH G+GT F DDP +F S
Sbjct: 120 HHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQDDPTVFTFS 179
Query: 165 THQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLIL 224
H + ++P + S L+L LP G D + + + KPDL+
Sbjct: 180 MHCEVNFP----------SQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDLVF 229
Query: 225 VSAGYDAHVLDPLASLQFT-TGTYYMLAANIKQLAKDLC---GSRCVFFLEGGY--NLNS 278
AG D HV D L L T TG Y ++L C G + GGY N++
Sbjct: 230 YDAGVDTHVGDRLGKLAMTNTGLY-----RRERLVLSTCLAAGYPVACVIGGGYAKNIHD 284
Query: 279 LSYSVADSFRA 289
L Y + RA
Sbjct: 285 LVYRHSLLHRA 295
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 115/267 (43%), Gaps = 31/267 (11%)
Query: 21 ASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY---ATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE G Y AT F + A GA I
Sbjct: 62 ASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATI 120
Query: 78 ----ALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHG 133
L+D + + N G+ HHA GFC + + +R
Sbjct: 121 TAAQCLIDGMCKVAINWSG---GW-------HHAKKDEASGFCYLNDAVLGILRLRRK-- 168
Query: 134 LKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ--DGSYPGTGKIDEVGRGDGEGSTLN 191
+R+ +D D+HHG+G DAF + +S H+ G +PGTG + +VG G G ++N
Sbjct: 169 FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVN 228
Query: 192 LPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT-TGTYYML 250
+P+ G D + V+ Q F P +++ G D DP+ S T G L
Sbjct: 229 VPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCL 288
Query: 251 AANIK-QLAKDLCGSRCVFFLEGGYNL 276
++ QLA + G GGYNL
Sbjct: 289 KYILQWQLATLILGG-------GGYNL 308
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 105 HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLS 164
HHA GFC ++ + + H +RV ID DVHHG+G +AFY + +S
Sbjct: 138 HHAKKSEASGFCYVNDIVLGILELLKYH--QRVLYIDIDVHHGDGVEEAFYTTDRVMTVS 195
Query: 165 THQDGSY-PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLI 223
H+ G Y PGTG + ++G G G+ +N+PL G D A ++F +I + F+P +
Sbjct: 196 FHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETFQPAAV 255
Query: 224 LVSAGYDAHVLDPLASLQFTT 244
++ G D+ D L T
Sbjct: 256 VLQCGADSLTGDRLGCFNLTV 276
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Length = 482
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 6/165 (3%)
Query: 80 VDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFI 139
V S V +K + D + +A HHA GFC ++ +A + H +RV
Sbjct: 118 VASAVKLNKQQTDIAVNWA---GGLHHAKKSEASGFCYVNDIVLAILELLKYH--QRVLY 172
Query: 140 IDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGRGDGEGSTLNLPLPGGS 198
ID D+HHG+G +AFY + +S H+ G Y PGTG + ++G G G+ +N PL G
Sbjct: 173 IDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGI 232
Query: 199 GDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 243
D + +F V+ + F+P +++ G D+ D L T
Sbjct: 233 DDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLT 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,011,077
Number of Sequences: 539616
Number of extensions: 6119226
Number of successful extensions: 14203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13897
Number of HSP's gapped (non-prelim): 117
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)