RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020361
(327 letters)
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 174 bits (441), Expect = 4e-52
Identities = 99/338 (29%), Positives = 151/338 (44%), Gaps = 33/338 (9%)
Query: 13 IELKNFSPASVDDIASVHARAYVSGLEKA------------MDRASQQGIILIEGSGPTY 60
E AS++++ SVH+ +V +Q+ +++ G
Sbjct: 50 CECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGV 109
Query: 61 ATATTFQESL---AAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCV 117
T T + E AA A ++ D + +RPPGHHA MGFC
Sbjct: 110 DTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAV--VRPPGHHADHSTAMGFCF 167
Query: 118 FGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGS---YPGT 174
F +VAIA R Q+ ++ I+D+DVHHGNGT FY DP + ++S H+ +PG+
Sbjct: 168 FNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS 227
Query: 175 GKIDEVGRGDGEGSTLNLPLPG----GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYD 230
G +DEVG G GEG +N+ G GD F V++P A+ F PDL+LVSAG+D
Sbjct: 228 GAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFD 287
Query: 231 AHVLD--PLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFR 288
A PL + + + Q +L G V LEGG++L ++ +
Sbjct: 288 AAEGHPAPLGGYHVSAKCFGYMT----QQLMNLAGGAVVLALEGGHDLTAICDASEACVA 343
Query: 289 AFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHS 326
A LG ++P+ +++E V +HS
Sbjct: 344 ALLGNR--VDPLSEEGW-KQKPNLNAIRSLEAVIRVHS 378
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 164 bits (416), Expect = 1e-48
Identities = 69/296 (23%), Positives = 108/296 (36%), Gaps = 17/296 (5%)
Query: 20 PASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGS--GPTYATATTFQESLAAAGAGI 77
AS++++A+ H AY+ L+K IE AT F + A GA I
Sbjct: 48 VASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATI 107
Query: 78 ALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRV 137
++ HHA GFC + + +R +R+
Sbjct: 108 TAAQCLIDGMCKVAINW------SGGWHHAKKDEASGFCYLNDAVLGILRLRRKF--ERI 159
Query: 138 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY--PGTGKIDEVGRGDGEGSTLNLPLP 195
+D D+HHG+G DAF + +S H+ PGTG + +VG G G ++N+P+
Sbjct: 160 LYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 219
Query: 196 GGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIK 255
G D + V+ Q F P +++ G D DP+ S T I
Sbjct: 220 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 279
Query: 256 QLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPS 311
Q + GGYNL + + LG+ + D+ P
Sbjct: 280 QWQL-----ATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPD 330
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 153 bits (388), Expect = 2e-44
Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 14/278 (5%)
Query: 20 PASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIAL 79
PA+ +++ H Y++ L +A + + Y ++ ++ A +
Sbjct: 50 PATKEELLLFHTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGST 109
Query: 80 VDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFI 139
V ++ HHA GFC N A+ Y ++ G KR+
Sbjct: 110 VQAI-----EEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRK-KGFKRILY 163
Query: 140 IDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY---PGTGKIDEVGRGDGEGSTLNLPLPG 196
ID D HH +G +AFYD +F LS HQ Y G ++E+G G G+G LN+PLP
Sbjct: 164 IDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPK 223
Query: 197 GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQ 256
G D + + + F+P++ L+ G D + D L+ + + +++
Sbjct: 224 GLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVRE 283
Query: 257 LAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP 294
+ V+ GGY+ +L+ + + G
Sbjct: 284 VFG-----EGVYLGGGGYHPYALARAWTLIWCELSGRE 316
>d1kjpa_ d.92.1.2 (A:) Thermolysin {Bacillus thermoproteolyticus
[TaxId: 1427]}
Length = 316
Score = 30.0 bits (67), Expect = 0.36
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 138 FIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEG---STLNLPL 194
I VH+ G N+AF++ + + P +G ID V T L
Sbjct: 98 AAIRSSVHYSQGYNNAFWNGSQMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIY 157
Query: 195 PGGSG 199
SG
Sbjct: 158 QNESG 162
>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium
[TaxId: 1404]}
Length = 371
Score = 29.4 bits (66), Expect = 0.62
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 195 PGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLAS 239
PG G T + T ++I ++ PD I+ +D LA+
Sbjct: 164 PGVMGMTGIETS--DIIFGVVKKVNPDFII--------AIDALAA 198
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 269
Score = 27.3 bits (60), Expect = 2.8
Identities = 10/68 (14%), Positives = 18/68 (26%)
Query: 34 YVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDP 93
V+ + DR Q + + P A+ + V P P
Sbjct: 147 VVTAHGNSTDRLKDQVSLDTRMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHYVSASPYP 206
Query: 94 PLGFALIR 101
L++
Sbjct: 207 AATLKLLQ 214
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani
[TaxId: 1513]}
Length = 247
Score = 27.1 bits (59), Expect = 2.8
Identities = 5/48 (10%), Positives = 13/48 (27%)
Query: 133 GLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEV 180
++I + T + + L + + ID+
Sbjct: 179 SSANLYINGVLMGSAEITGLGAIREDNNITLKLDRCNNNNQYVSIDKF 226
>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
catalytic C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 26.6 bits (59), Expect = 4.6
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 104 GHHAIPK--GPM--GFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHH 146
H IPK GP+ G C GL+ FI DF +H
Sbjct: 301 KHLGIPKPFGPVINGRCCLEE---KVCSLLEPLGLQCTFINDFFTYH 344
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 26.5 bits (57), Expect = 4.8
Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 119 GNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFF 162
G + A KRV +ID HHG A
Sbjct: 14 GGLEAGWNAASL--HKKRVAVIDLQKHHGPPHYAALGGTCVNVG 55
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
(KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 226
Score = 26.0 bits (57), Expect = 5.4
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 16 KNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGA 75
+ P S+ ++ H D +I + G + + + GA
Sbjct: 133 SHMKPNSILGLS--HGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGA 190
Query: 76 GI 77
GI
Sbjct: 191 GI 192
>d1mg7a2 d.58.26.6 (A:188-380) Early switch protein XOL-1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 193
Score = 25.3 bits (55), Expect = 9.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 141 DFDVHHGNGTNDAFYDDPDIFFLST 165
D + + NGT + F D+ F+ T
Sbjct: 9 DGSLENSNGTTEHFNKKHDLVFVKT 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.404
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,244,907
Number of extensions: 59321
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 13
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)