BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020362
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp
Length = 339
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 184/301 (61%), Gaps = 37/301 (12%)
Query: 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPH 89
RK+K++ +MGATGTGKSRL+IDLA FP E+INSDKMQVYKGLDI TNK++ + GVPH
Sbjct: 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 97
Query: 90 HLLGIIEP-NANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV---------- 138
HLLG ++P T DFR+ A A+ I R +LP++ GGS+S+I AL+
Sbjct: 98 HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPG 157
Query: 139 -----NGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQAD- 192
+ +LRY+C FLWVDVS+ VL ++++RVD M+ELG+ +E+ + + P+ +
Sbjct: 158 VFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDED 217
Query: 193 ------YSRGIRRAIGVPELDQY---IRAGSLLDH-----KIRAKLLEAAINKIKENTCN 238
G+R+AIGVPE D+Y R G + ++R E A+ IKENTC+
Sbjct: 218 HDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCH 277
Query: 239 LSCRQLQKIHRLNDVWNWNIHRIDATEVFL-----KRGEEADEAWEKLVMLPSTMTVRQF 293
L+ RQ+ KI RL W++ R+DATE F GE+ E WEK V+ PS V +F
Sbjct: 278 LAKRQIGKILRLKGA-GWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVSRF 336
Query: 294 L 294
L
Sbjct: 337 L 337
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 76/111 (68%)
Query: 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLG 93
++ ++G T +GK+ L+I++A +F EII+ D QVY+G DI T KVT EE G+PH+ +
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXID 68
Query: 94 IIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAE 144
I+ P+A+F+A +F+ A I+ I R ++PIIAGG+ YI++L+ A E
Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFE 119
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K+K+V ++G T GK++ ++ LA R E+I+ D QVY+G DI T K+T EE GVPHH
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQVYRGXDIGTAKITAEEXDGVPHH 61
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVN----GDA-AEF 145
L+ I +P+ +F+ DF++ A+ I I R RLP + GG+ Y+ A+++ GD A+
Sbjct: 62 LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADE 121
Query: 146 QLRYECFFLWVDVSLPVLHSFVSE 169
R+E + LH +S+
Sbjct: 122 DYRHELEAFVNSYGVQALHDKLSK 145
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 20/101 (19%)
Query: 149 YECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIR-----RAIGV 203
Y + + VL+ ++ RVD+ VE GL++E K+++D RGIR +AIG
Sbjct: 190 YNLVXIGLTXERDVLYDRINRRVDQXVEEGLIDEAKKLYD------RGIRDCQSVQAIGY 243
Query: 204 PELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
E Y LD + LE AI+ +K N+ + RQL
Sbjct: 244 KEXYDY------LDGNV---TLEEAIDTLKRNSRRYAKRQL 275
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%)
Query: 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92
KV+ + G TG GKS+L+I LA +F E+INSD MQVYK + I+TNK +E G+PHH++
Sbjct: 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVM 62
Query: 93 GIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVN 139
++ + + + F AIE I R ++PI+ GG+ Y++ L N
Sbjct: 63 NHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFN 109
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 147 LRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFD--PQADYS-----RGIRR 199
L+++ FLW+ L + +RVD M+E G ++E+KQ+++ Q ++ G+ +
Sbjct: 185 LKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQ 244
Query: 200 AIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRL--NDVWNWN 257
IG E ++ G D+ ++ LE I ++K T + RQ++ I ++ D+ +
Sbjct: 245 VIGFKEFLPWL-TGKTDDNTVK---LEDCIERMKTRTRQYAKRQVKWIKKMLIPDI-KGD 299
Query: 258 IHRIDATEV 266
I+ +DAT++
Sbjct: 300 IYLLDATDL 308
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%)
Query: 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92
K +F+MG T +GK+ LAI+L P E+I+ D +YKG+DI T K EE PH LL
Sbjct: 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLL 70
Query: 93 GIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
I +P+ ++A DFR A + I + R+P++ GG+ Y KAL+ G
Sbjct: 71 DIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEG 118
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%)
Query: 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92
K +F+ G T +GK+ LAI+L P E+I+ D +YKG DI T K EE PH LL
Sbjct: 11 KAIFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRLL 70
Query: 93 GIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
I +P+ ++A DFR A I + R+P++ GG+ Y KAL+ G
Sbjct: 71 DIRDPSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALLEG 118
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLG 93
+F+MG T GK+ LA+ LA P E+I+ D +Y+G+DI T K + E PH L+
Sbjct: 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66
Query: 94 IIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
I +P +++A +FR A A+ +R R+P++ GG+ Y KAL+ G
Sbjct: 67 IRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEG 113
>pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
pdb|3F1C|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
Length = 246
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 105 DFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGD---AAEFQLRYECFFLWVDVSLP 161
++ NHA I+ +S DR+ +I GG + ++NG + L + + D P
Sbjct: 58 EWMNHAEDNIKKYISDDRIVVIEGGEDRN-ETIMNGIRFVEKTYGLTDDDIIVTHDAVRP 116
Query: 162 VL-HSFVSERVDRMVELGLVEEVKQMFD 188
L H + E +D +E G V+ V + D
Sbjct: 117 FLTHRIIEENIDAALETGAVDTVIEALD 144
>pdb|4EXL|A Chain A, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|B Chain B, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|C Chain C, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|D Chain D, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
Length = 265
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 210 IRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNW 256
I A +L+DHK+ L +NK + + NL+ QL++I + +V NW
Sbjct: 68 IDASALVDHKVAVAGLALIVNK-EVDVDNLTTEQLRQIF-IGEVTNW 112
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified
Dna
Length = 916
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 21 VHKLEHFFRR--KDKVVFVMGATGTGKSRLAID 51
VH L++ R K+++V + G +G+GKS LA+D
Sbjct: 11 VHNLKNITVRIPKNRLVVITGVSGSGKSSLAMD 43
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66
V+ V G GTGKS + L ++ A ++N D++
Sbjct: 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRI 46
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 193 YSRGIRRAIGVPE-LDQYI-RAGSLLDHKIRAKLLEAAINKIKENTCN---LSCRQLQKI 247
Y G ++ + E +D Y+ AG L D+ +EA++NK+K CN L+ QLQ
Sbjct: 419 YDLGGKQKLSFEEGVDSYVPYAGKLKDN------VEASLNKVKSTMCNCGALTIPQLQSK 472
Query: 248 HRLNDVWNWNIHRIDATEVFLK 269
++ V + +I A +V +K
Sbjct: 473 AKITLVSSVSIVEGGAHDVIVK 494
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 193 YSRGIRRAIGVPE-LDQYI-RAGSLLDHKIRAKLLEAAINKIKENTCN---LSCRQLQKI 247
Y G ++ + E +D Y+ AG L D+ +EA++NK+K CN L+ QLQ
Sbjct: 419 YDLGGKQKLSFEEGVDSYVPYAGKLKDN------VEASLNKVKSTMCNCGALTIPQLQSK 472
Query: 248 HRLNDVWNWNIHRIDATEVFLK 269
++ V + +I A +V +K
Sbjct: 473 AKITLVSSVSIVEGGAHDVIVK 494
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 129 GSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHS------FVSER--------VDRM 174
G S+ ++A+ NG F + EC ++V+ + HS FV E D++
Sbjct: 473 GKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKL 532
Query: 175 VELGLVEEVKQM 186
+E G +E+ M
Sbjct: 533 IEFGFTDEMIAM 544
>pdb|1PVN|A Chain A, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|B Chain B, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|C Chain C, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|D Chain D, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
Length = 376
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 193 YSRGIRRAIGVPE-LDQYI-RAGSLLDHKIRAKLLEAAINKIKENTCN---LSCRQLQKI 247
Y G ++ + E +D Y+ AG L D+ +EA++NK+K CN L+ QLQ
Sbjct: 292 YDLGGKQKLSFEEGVDSYVPYAGKLKDN------VEASLNKVKSTMCNCGALTIPQLQSK 345
Query: 248 HRLNDVWNWNIHRIDATEVFLK 269
++ V + +I A +V +K
Sbjct: 346 AKITLVSSVSIVEGGAHDVIVK 367
>pdb|1LRT|A Chain A, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|B Chain B, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|C Chain C, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|D Chain D, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
Length = 376
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 193 YSRGIRRAIGVPE-LDQYI-RAGSLLDHKIRAKLLEAAINKIKENTCN---LSCRQLQKI 247
Y G ++ + E +D Y+ AG L D+ +EA++NK+K CN L+ QLQ
Sbjct: 292 YDLGGKQKLSFEEGVDSYVPYAGKLKDN------VEASLNKVKSTMCNCGALTIPQLQSK 345
Query: 248 HRLNDVWNWNIHRIDATEVFLK 269
++ V + +I A +V +K
Sbjct: 346 AKITLVSSVSIVEGGAHDVIVK 367
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 152 FFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELD 207
+FL V+ P H F +E +++L ++ +Q+F D G++ + E+D
Sbjct: 258 WFLGVNEISPEYHQFANESGMSLLDLRFAQKARQVFRDNTDNMYGLKAMLEGSEVD 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,918,495
Number of Sequences: 62578
Number of extensions: 357854
Number of successful extensions: 1039
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 22
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)