BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020362
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis
thaliana GN=IPT5 PE=1 SV=2
Length = 330
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/334 (63%), Positives = 256/334 (76%), Gaps = 11/334 (3%)
Query: 1 MKLSMTACKQAVQPL-VTFQGVHKLEHFFRRKDKVVFVMGATGTGKSRLAIDLATRFPAE 59
MK MTA +Q +QPL + FQG FFRRKDKVVFVMGATGTGKSRLAIDLATRFPAE
Sbjct: 1 MKPCMTALRQVIQPLSLNFQGNMVDVPFFRRKDKVVFVMGATGTGKSRLAIDLATRFPAE 60
Query: 60 IINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGII-EPNANFTATDFRNHASLAIESIL 118
I+NSDK+QVYKGLDIVTNKVT EE GVPHHLLG + + +FTA DF+ A A+ESI+
Sbjct: 61 IVNSDKIQVYKGLDIVTNKVTPEESLGVPHHLLGTVHDTYEDFTAEDFQREAIRAVESIV 120
Query: 119 SRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELG 178
RDR+PIIAGGS+SYI+ALVN D +F+LRY C FLWVDVS PVLHSFVSERVD+MV++G
Sbjct: 121 QRDRVPIIAGGSNSYIEALVN-DCVDFRLRYNCCFLWVDVSRPVLHSFVSERVDKMVDMG 179
Query: 179 LVEEVKQMFDP-QADYSRGIRRAIGVPELDQYIRAGSLLDH--KIRAKLLEAAINKIKEN 235
LV+EV+++FDP +DYS GIRRAIGVPELD+++R+ + ++ + +LLE AI KIKEN
Sbjct: 180 LVDEVRRIFDPSSSDYSAGIRRAIGVPELDEFLRS-EMRNYPAETTERLLETAIEKIKEN 238
Query: 236 TCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLKRGEEADEAWEKLVMLPSTMTVRQFL- 294
TC L+CRQLQKI RL W WN+HR+DATEVFL+RGEEADEAW+ V PS + V +FL
Sbjct: 239 TCLLACRQLQKIQRLYKQWKWNMHRVDATEVFLRRGEEADEAWDNSVAHPSALAVEKFLS 298
Query: 295 -YDEDRVTTMPETAPAIVNTPPVPIPTAVAAATR 327
D+ + P I P P+P AVAA +R
Sbjct: 299 YSDDHHLEGANILLPEISAVP--PLPAAVAAISR 330
>sp|Q94ID1|IPT7_ARATH Adenylate isopentenyltransferase 7, mitochondrial OS=Arabidopsis
thaliana GN=IPT7 PE=2 SV=2
Length = 329
Score = 350 bits (898), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 173/305 (56%), Positives = 231/305 (75%), Gaps = 6/305 (1%)
Query: 1 MKLSMTACKQAVQPLVTFQGVH---KLEHFFRRKDKVVFVMGATGTGKSRLAIDLATRFP 57
MK S+++ KQ VQP++ F+ + F K+KV+FVMGATG+GKSRLAIDLATRF
Sbjct: 1 MKFSISSLKQ-VQPILCFKNKLSKVNVNSFLHPKEKVIFVMGATGSGKSRLAIDLATRFQ 59
Query: 58 AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA-NFTATDFRNHASLAIES 116
EIINSDK+Q+YKGLD++TNKVT +EC GVPHHLLG+ + A N TAT + AS AI
Sbjct: 60 GEIINSDKIQLYKGLDVLTNKVTPKECRGVPHHLLGVFDSEAGNLTATQYSRLASQAISK 119
Query: 117 ILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVE 176
+ + ++LPI+AGGS+SYI+ALVN + Y+C F+WVDVSLPVL+SFVS+RVDRM+E
Sbjct: 120 LSANNKLPIVAGGSNSYIEALVNHSSGFLLNNYDCCFIWVDVSLPVLNSFVSKRVDRMME 179
Query: 177 LGLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENT 236
GL+EEV+++F+P+A+YS GIRRAIGVPEL +Y+R SL+D ++K+L+ A+ IK+NT
Sbjct: 180 AGLLEEVREVFNPKANYSVGIRRAIGVPELHEYLRNESLVDRATKSKMLDVAVKNIKKNT 239
Query: 237 CNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLKRG-EEADEAWEKLVMLPSTMTVRQFLY 295
L+CRQL+KI RL+ W ++HR+DATEVFLKR EE DEAWE LV PS V +F
Sbjct: 240 EILACRQLKKIQRLHKKWKMSMHRVDATEVFLKRNVEEQDEAWENLVARPSERIVDKFYN 299
Query: 296 DEDRV 300
+ +++
Sbjct: 300 NNNQL 304
>sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis
thaliana GN=IPT3 PE=1 SV=1
Length = 336
Score = 335 bits (859), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 170/306 (55%), Positives = 223/306 (72%), Gaps = 10/306 (3%)
Query: 1 MKLSMTACKQAVQPLVTFQ------GVHKLE-HFFRRKDKVVFVMGATGTGKSRLAIDLA 53
MK+SM CKQ + P T G + L + + KDKVV +MGATGTGKSRL++D+A
Sbjct: 3 MKISMAMCKQPLPPSPTLDFPPARFGPNMLTLNPYGPKDKVVVIMGATGTGKSRLSVDIA 62
Query: 54 TRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113
TRF AEIINSDK+QV++GLDIVTNK+T EE GVPHHLLG++ P A+ TA ++ + A+L+
Sbjct: 63 TRFRAEIINSDKIQVHQGLDIVTNKITSEESCGVPHHLLGVLPPEADLTAANYCHMANLS 122
Query: 114 IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173
IES+L+R +LPII GGS+SY++ALV+ +F+ RY+C FLWVDV+LPVLH FVSERVD+
Sbjct: 123 IESVLNRGKLPIIVGGSNSYVEALVDDKENKFRSRYDCCFLWVDVALPVLHGFVSERVDK 182
Query: 174 MVELGLVEEVKQMFD-PQADYSRGIRRAIGVPELDQYIRAGSLLDHKIRAKLLEAAINKI 232
MVE G+VEEV++ FD +DYSRGI++AIG PE D++ R L+ + R +LL + +I
Sbjct: 183 MVESGMVEEVREFFDFSNSDYSRGIKKAIGFPEFDRFFRNEQFLNVEDREELLSKVLEEI 242
Query: 233 KENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLKRGEEADE--AWEKLVMLPSTMTV 290
K NT L+CRQ +KI RL V W+I R+DAT VF KR + D AWE+LV PST TV
Sbjct: 243 KRNTFELACRQREKIERLRKVKKWSIQRVDATPVFTKRRSKMDANVAWERLVAGPSTDTV 302
Query: 291 RQFLYD 296
+FL D
Sbjct: 303 SRFLLD 308
>sp|Q5GHF7|IPT_HUMLU Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1
Length = 329
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 185/301 (61%), Gaps = 37/301 (12%)
Query: 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPH 89
RK+K++ +MGATGTGKSRL+IDLA FP E+INSDKMQVYKGLDI TNK++ + GVPH
Sbjct: 28 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 87
Query: 90 HLLGIIEP-NANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV---------- 138
HLLG ++P T DFR+ A A+ I R +LP++ GGS+S+I AL+
Sbjct: 88 HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPG 147
Query: 139 -----NGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQ-AD 192
+ +LRY+C FLWVDVS+ VL ++++RVD M+ELG+ +E+ + + P+ D
Sbjct: 148 VFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDED 207
Query: 193 YSR------GIRRAIGVPELDQY---IRAGSLLDH-----KIRAKLLEAAINKIKENTCN 238
+ G+R+AIGVPE D+Y R G + ++R E A+ IKENTC+
Sbjct: 208 HDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCH 267
Query: 239 LSCRQLQKIHRLNDVWNWNIHRIDATEVFL-----KRGEEADEAWEKLVMLPSTMTVRQF 293
L+ RQ+ KI RL W++ R+DATE F GE+ E WEK V+ PS V +F
Sbjct: 268 LAKRQIGKILRLKGA-GWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVSRF 326
Query: 294 L 294
L
Sbjct: 327 L 327
>sp|Q94ID3|IPT1_ARATH Adenylate isopentenyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=IPT1 PE=1 SV=2
Length = 357
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/296 (44%), Positives = 183/296 (61%), Gaps = 35/296 (11%)
Query: 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPH 89
RKDKVV ++GATG GKSRL++DLATRFP+EIINSDK+QVY+GL+I TN++T ++ GVPH
Sbjct: 63 RKDKVVVILGATGAGKSRLSVDLATRFPSEIINSDKIQVYEGLEITTNQITLQDRRGVPH 122
Query: 90 HLLGIIEP-NANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEF--- 145
HLLG+I P + TA +FR+ AS ++ I SR ++PIIAGGS+S++ AL+ A F
Sbjct: 123 HLLGVINPEHGELTAGEFRSAASNVVKEITSRQKVPIIAGGSNSFVHALL---AQRFDPK 179
Query: 146 -------------QLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDP--- 189
LRYEC F+WVDVS VL+ ++ RVD M++ G+ EE+ + +DP
Sbjct: 180 FDPFSSGSCLISSDLRYECCFIWVDVSETVLYEYLLRRVDEMMDSGMFEELSRFYDPVKS 239
Query: 190 QADYSRGIRRAIGVPELDQYIR-----AGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
+ GIR+AIGVPE D Y + + +R + A++ IK NT L+ RQ+
Sbjct: 240 GLETRFGIRKAIGVPEFDGYFKEYPPEKKMIKWDALRKAAYDKAVDDIKRNTWTLAKRQV 299
Query: 245 QKIHRLNDVWNWNIHRIDATEVF----LKRGEEAD--EAWEKLVMLPSTMTVRQFL 294
+KI L D W I R+DAT F +K E E WE+ V+ PS V++ L
Sbjct: 300 KKIEMLKDA-GWEIERVDATASFKAVMMKSSSEKKWRENWEEQVLEPSVKIVKRHL 354
>sp|Q9LJL4|IPT8_ARATH Adenylate isopentenyltransferase 8, chloroplastic OS=Arabidopsis
thaliana GN=IPT8 PE=2 SV=1
Length = 330
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 178/291 (61%), Gaps = 34/291 (11%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K KVV +MGATG+GKS L+IDLATRF EI+NSDK+Q Y GL + TN+++ E GVPHH
Sbjct: 42 KQKVVVIMGATGSGKSCLSIDLATRFSGEIVNSDKIQFYDGLKVTTNQMSILERCGVPHH 101
Query: 91 LLGIIEP-NANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV----------- 138
LLG + P ++ T ++FR+ AS +I I +R LPIIAGGS+S+I AL+
Sbjct: 102 LLGELPPDDSELTTSEFRSLASRSISEITARGNLPIIAGGSNSFIHALLVDRFDPKTYPF 161
Query: 139 -NGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYS--- 194
+ + LRYEC FLWVDVS+ VL ++S+RVD+M+E G+ EE+ +DP+ S
Sbjct: 162 SSETSISSGLRYECCFLWVDVSVSVLFEYLSKRVDQMMESGMFEELAGFYDPRYSGSAIR 221
Query: 195 -RGIRRAIGVPELDQYIRAGSLLDHKIRAKLLE----------AAINKIKENTCNLSCRQ 243
GI + IG+PE D+Y SL + + K+ E A+ +IKENT L+ +Q
Sbjct: 222 AHGIHKTIGIPEFDRYF---SLYPPERKQKMSEWDQARKGAYDEAVQEIKENTWRLAKKQ 278
Query: 244 LQKIHRLNDVWNWNIHRIDATEVFLKRGEEADEAWEKLVMLPSTMTVRQFL 294
+++I +L W+I R+DAT F G + E W+ V+ S V++FL
Sbjct: 279 IERIMKLKSS-GWDIQRLDATPSF---GRSSREIWDNTVLDESIKVVKRFL 325
>sp|Q9C6L1|IPT6_ARATH Adenylate isopentenyltransferase 6, chloroplastic OS=Arabidopsis
thaliana GN=IPT6 PE=2 SV=1
Length = 342
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 173/299 (57%), Gaps = 34/299 (11%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRF-PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPH 89
KDKVV + G TGTGKSRL++DLATRF PAEIINSDKMQ+YKG +IVTN + E GVPH
Sbjct: 44 KDKVVLITGTTGTGKSRLSVDLATRFFPAEIINSDKMQIYKGFEIVTNLIPLHEQGGVPH 103
Query: 90 HLLGIIEP-NANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV----NGDAAE 144
HLLG P + T +FR+ A+L+I ++S +LPI+ GGS+S+ AL+ + D
Sbjct: 104 HLLGQFHPQDGELTPAEFRSLATLSISKLISSKKLPIVVGGSNSFNHALLAERFDPDIDP 163
Query: 145 FQ-----------LRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADY 193
F LRY+C LWVDV PVL + RVD+M+E GLVE++ +++DP D
Sbjct: 164 FSPGSSLSTICSDLRYKCCILWVDVLEPVLFQHLCNRVDQMIESGLVEQLAELYDPVVDS 223
Query: 194 SR--GIRRAIGVPELDQYIRA-GSLLDHKI----RAKLLEAAINKIKENTCNLSCRQLQK 246
R G+R+ IGV E D+Y R +D I R E + +KE TC L +Q +K
Sbjct: 224 GRRLGVRKTIGVEEFDRYFRVYPKEMDKGIWDLARKAAYEETVKGMKERTCRLVKKQKEK 283
Query: 247 IHRLNDVWNWNIHRIDATEVFLK---------RGEEADEAWEKLVMLPSTMTVRQFLYD 296
I +L W I R+DAT + G+ E WEK ++ S V++FL +
Sbjct: 284 IMKLIR-GGWEIKRLDATAAIMAELNQSTAKGEGKNGREIWEKHIVDESVEIVKKFLLE 341
>sp|Q9SB60|IPT4_ARATH Adenylate isopentenyltransferase 4 OS=Arabidopsis thaliana GN=IPT4
PE=1 SV=1
Length = 318
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 167/294 (56%), Gaps = 32/294 (10%)
Query: 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHL 91
DK+V +MGATG+GKS L++DLA F AEIINSDKMQ Y GL I TN+ T E+ GVPHHL
Sbjct: 5 DKMVVIMGATGSGKSSLSVDLALHFKAEIINSDKMQFYDGLKITTNQSTIEDRRGVPHHL 64
Query: 92 LGIIEPNAN-FTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV--NGDAAEF--- 145
LG + P A TA +FR A+ AI I R +LPI+AGGS+SYI AL+ + D +
Sbjct: 65 LGELNPEAGEVTAAEFRVMAAEAISEITQRKKLPILAGGSNSYIHALLAKSYDPENYPFS 124
Query: 146 --------QLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSR-- 195
+L+Y+C F+W+DV VL ++S R+D M++ G+ EE+ + +
Sbjct: 125 DHKGSICSELKYDCCFIWIDVDQSVLFEYLSLRLDLMMKSGMFEEIAEFHRSKKAPKEPL 184
Query: 196 GIRRAIGVPELDQYIRAGSLLD-----HKIRAKLLEAAINKIKENTCNLSCRQLQKIHRL 250
GI +AIGV E D Y++ + +R + E A+ IKENT L+ Q+ KI++L
Sbjct: 185 GIWKAIGVQEFDDYLKMYKWDNDMDKWDPMRKEAYEKAVRAIKENTFQLTKDQITKINKL 244
Query: 251 NDVWNWNIHRIDATEVF------LKRGEEADEA----WEKLVMLPSTMTVRQFL 294
+ W+I ++DAT F K GE E W K V+ P VR L
Sbjct: 245 RNA-GWDIKKVDATASFREAIRAAKEGEGVAEMQRKIWNKEVLEPCVKIVRSHL 297
>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2
PE=1 SV=2
Length = 466
Score = 131 bits (329), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 100/159 (62%), Gaps = 9/159 (5%)
Query: 37 VMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIE 96
+MG TG+GKS+LA+DLA+ FP EIIN+D MQ+Y GLD++TNKVT +E GVPHHLLG +
Sbjct: 25 IMGPTGSGKSKLAVDLASHFPVEIINADAMQIYSGLDVLTNKVTVDEQKGVPHHLLGTVS 84
Query: 97 PNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVN----GDAAEFQLRYECF 152
+ FTA DFR+ IE I+SR+ +P++ GG+ YI+A+V+ DAAE EC
Sbjct: 85 SDMEFTARDFRDFTVPLIEEIVSRNHIPVLVGGTHYYIQAVVSKFLLDDAAEDT--EECC 142
Query: 153 FLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQA 191
DV+ V V E V +L E+ + DP A
Sbjct: 143 ---ADVASVVDQDMVVESVFGRDDLSHGYELLKELDPVA 178
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 32/191 (16%)
Query: 148 RYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELD 207
R++ + +D VL +V +RVD MV+ GL++EV ++ P ADY+RG+R++IGV E +
Sbjct: 223 RFDYCLICMDAETAVLDRYVEQRVDAMVDAGLLDEVYDIYKPGADYTRGLRQSIGVREFE 282
Query: 208 QYIR-------AGSLL---------------------DHKIRAKLLEAAINKIKENTCNL 239
+++ AG L D K+R +LE AI+++K NT L
Sbjct: 283 DFLKIHLSETCAGHLTSLSNDDKVMKENLRKILNFPKDDKLRI-MLEEAIDRVKLNTRRL 341
Query: 240 SCRQLQKIHRLNDVWNWNIHRIDATEVFLKRGEEADEAWEKLVMLPSTMTVRQFLYDEDR 299
RQ +++ RL V+ WNIH IDATE L + E E+W V+ P++ +R FL E
Sbjct: 342 LRRQKRRVSRLETVFGWNIHYIDATEYILSKSE---ESWNAQVVKPASEIIRCFLETETE 398
Query: 300 VTTMPETAPAI 310
P + +I
Sbjct: 399 SGRDPTSGKSI 409
>sp|B1HRH3|MIAA_LYSSC tRNA dimethylallyltransferase OS=Lysinibacillus sphaericus (strain
C3-41) GN=miaA PE=3 SV=1
Length = 300
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 75/106 (70%)
Query: 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92
+VV ++G T +GK+ L+I+LA ++ EIIN D MQVYKGLDI T K+TEEE GVPHHLL
Sbjct: 10 EVVAIVGPTASGKTALSIELAKKYNGEIINGDSMQVYKGLDIGTAKITEEEMEGVPHHLL 69
Query: 93 GIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
+EP A+F+ D++ I I +R +LPII GGS Y++A++
Sbjct: 70 SFLEPTASFSVADYQKLVREKIADIQARHKLPIIVGGSGLYVQAVL 115
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 21/121 (17%)
Query: 142 AAEFQLRYEC-------FFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYS 194
AAE Q R E L ++S VL+ ++ RVD M+E GL+EEV+ ++
Sbjct: 183 AAEAQNRGEVPLYNHLILGLGQNMSREVLYDRINRRVDLMMENGLLEEVQGLWQQNI--- 239
Query: 195 RGIR--RAIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLND 252
RG++ +AIG EL Y LD K LE AI+ +K+N+ + RQL D
Sbjct: 240 RGVQSIQAIGYKELYDY------LDGKCS---LEGAIDSLKQNSRRYAKRQLTYFRNKMD 290
Query: 253 V 253
V
Sbjct: 291 V 291
>sp|Q8R5S5|MIAA_THETN tRNA dimethylallyltransferase OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=miaA PE=3 SV=1
Length = 315
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 75/106 (70%)
Query: 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92
++V ++G T TGKSRLA+D+A RF E++++D MQ+YK +DI T K+T+EE G+PHH++
Sbjct: 4 QIVLIVGPTATGKSRLAVDVAKRFNGEVVSADSMQIYKYMDIGTAKITKEEMQGIPHHMI 63
Query: 93 GIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
I+EPN F+ ++ A I+ I R +LPII GG+ YI ++V
Sbjct: 64 DIVEPNEEFSVAEYEKRAKAIIKDIHERGKLPIIVGGTGLYINSIV 109
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 162 VLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIRAGSLLDHKIR 221
+L+ ++ RVD M++ LVEEV + + +A+G E+ +Y L+ +I
Sbjct: 205 LLYEKINRRVDEMIKNNLVEEVVNLLKIGYNKYGTSMQALGYKEIVEY------LNGEIS 258
Query: 222 AKLLEAAINKIKENTCNLSCRQL 244
LE A+ KIK+ T + RQ+
Sbjct: 259 ---LEEAVEKIKKGTRRYAKRQI 278
>sp|Q39TZ3|MIAA_GEOMG tRNA dimethylallyltransferase OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=miaA PE=3 SV=1
Length = 309
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 73/110 (66%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K ++V V G T +GKS LA++LA R EI+N+D MQVY+G+DI T K ++EE VPHH
Sbjct: 6 KTRLVIVQGPTASGKSALALELAERIGGEIVNADSMQVYRGMDIGTAKPSQEERRRVPHH 65
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
L I++P NFTA DFR HAS AI I R + I+ GG+ YI+ L G
Sbjct: 66 LYDIVDPKVNFTAADFREHASRAIADIERRGKRVILVGGTGLYIRILTQG 115
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 149 YECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQ 208
Y C L + V +L+ V ERVDRM+ GLVEEV+ + + +IG E+
Sbjct: 193 YRCLKLGITVERELLYRRVEERVDRMIAEGLVEEVRGLLSAGYPATLKAMGSIGYREICA 252
Query: 209 YIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLND-VW 254
++ LD +R IK+NT + RQ+ R ++ +W
Sbjct: 253 HLAGEFSLDEAMRL---------IKQNTRQYAKRQMTWFRRDSEIIW 290
>sp|Q8CXG5|MIAA_OCEIH tRNA dimethylallyltransferase OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=miaA PE=3
SV=1
Length = 313
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 79/122 (64%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K+ V+ ++G T GKS L I++A RF E+I+ D QVYKG+DI T KVT+EE G+ HH
Sbjct: 2 KETVISIVGPTAVGKSLLGIEMAKRFNGEVISGDSTQVYKGMDIGTAKVTKEEMDGIMHH 61
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE 150
++ II P+ +F+ DF+ HA I+ +L R +LPI+ GGS YI+A++ Q R E
Sbjct: 62 MIDIISPDESFSVADFQLHAKKCIDDVLGRGKLPILVGGSGLYIQAVLYNYNFSEQRRDE 121
Query: 151 CF 152
F
Sbjct: 122 SF 123
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 149 YECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQ 208
Y + +D+ VL+ +++RVD M++ GL+EEV+ + D + + + AIG E+ Q
Sbjct: 189 YHLILIGLDMDRDVLYDRINQRVDHMIDTGLIEEVRDLIDRGYENCQSM-HAIGYKEIIQ 247
Query: 209 YIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
+I + +E AI+ +K+++ + RQL
Sbjct: 248 HISGN---------QPMEYAIDALKQHSRKYAKRQL 274
>sp|B7GIA2|MIAA_ANOFW tRNA dimethylallyltransferase OS=Anoxybacillus flavithermus (strain
DSM 21510 / WK1) GN=miaA PE=3 SV=1
Length = 311
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 74/107 (69%)
Query: 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHL 91
+KVV ++G T GK++++I LA R EIIN D MQVYKGLDI T K+ +EE G+PHHL
Sbjct: 3 EKVVVLIGPTAVGKTKMSIQLAKRLNGEIINGDSMQVYKGLDIGTAKIRQEETEGIPHHL 62
Query: 92 LGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
L I EP+ +F+ +F+ A I+ I R +LPII GG+ YI++++
Sbjct: 63 LDIKEPHESFSVAEFQTLARSLIKDITKRGKLPIIVGGTGLYIQSVI 109
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 146 QLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIR-----RA 200
QL Y + + + L++ +++RVD+M++ GL+EEVK++ Y +G+R +A
Sbjct: 182 QLVYNVALIGLTMEREKLYARINQRVDQMIDQGLIEEVKRL------YEQGLRDCQAIQA 235
Query: 201 IGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
IG EL Y G L L+ AI ++K+N+ + RQ
Sbjct: 236 IGYKELYAYF-DGML--------TLKEAIEQLKQNSRRYAKRQF 270
>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens
GN=TRIT1 PE=1 SV=1
Length = 467
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGV 87
+R +V ++GATGTGKS LA+ L R EI+++D MQVY+GLDI+TNKV+ +E
Sbjct: 19 LQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQVYEGLDIITNKVSAQEQRIC 78
Query: 88 PHHLLGIIEP-NANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HH++ ++P N+T DFRN A+ IE I +RD++PI+ GG++ YI++L+
Sbjct: 79 RHHMISFVDPLVTNYTVVDFRNRATALIEDIFARDKIPIVVGGTNYYIESLL 130
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 153 FLWVDVSLPVLHSFVSERVDRMVELGLVEEV---------KQMFDPQADYSRGIRRAIGV 203
LW+ VL + +RVD M+ GL+EE+ K + + DY GI ++IG
Sbjct: 226 ILWLHADQAVLDERLDKRVDDMLAAGLLEELRDFHRRYNQKNVSENSQDYQHGIFQSIGF 285
Query: 204 PELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQ 243
E +Y+ + +LL+ I +K+ T + +Q
Sbjct: 286 KEFHEYLITEGKCTLETSNQLLKKGIEALKQVTKRYARKQ 325
>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus
GN=Trit1 PE=2 SV=2
Length = 467
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGV 87
RR +V ++GATGTGKS LA+ L R EI+++D MQVY+GLDI+TNKV+ +E
Sbjct: 19 LRRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQVYEGLDIITNKVSAQEQKMC 78
Query: 88 PHHLLGIIEP-NANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HH++ ++P ++T DFRN A+ IE I +RD++PI+ GG++ YI++L+
Sbjct: 79 QHHMISFVDPLVTSYTVVDFRNKATALIEDIFARDKIPIVVGGTNYYIESLL 130
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 37/172 (21%)
Query: 153 FLWVDVSLPVLHSFVSERVDRMVELGLVEEV---------KQMFDPQADYSRGIRRAIGV 203
LW+ VL + +RVD M+ GL+EE+ K + + DY GI ++IG
Sbjct: 226 ILWLHADQAVLDERLDKRVDDMLAAGLLEELRGFHRRYNLKNISENSQDYQHGIFQSIGF 285
Query: 204 PELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDA 263
E +Y+ + +LL+ I +K+ T ++ R + W N
Sbjct: 286 KEFHEYLTTEGKCTPETSNQLLKKGIEALKQVT--------KRYARKQNRWVKN------ 331
Query: 264 TEVFLKR---------GEEADEA--WEKLVMLPSTMTVRQFLYDEDRVTTMP 304
FL R G E + WE+ V+ P+ V+ F+ + T MP
Sbjct: 332 --RFLSRPGPSVPPVYGLEVSDVSKWEESVLEPALNIVQSFIQGH-KPTAMP 380
>sp|A7Z500|MIAA_BACA2 tRNA dimethylallyltransferase OS=Bacillus amyloliquefaciens (strain
FZB42) GN=miaA PE=3 SV=1
Length = 314
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 73/109 (66%)
Query: 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPH 89
+K VV ++G T GK++L+I LA AEII+ D MQVYKG+DI T KVTEEE GVPH
Sbjct: 4 KKQPVVILVGPTAVGKTKLSIGLAKMLNAEIISGDSMQVYKGMDIGTAKVTEEETEGVPH 63
Query: 90 HLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HL+ I+EP+ F+ D++ I I R +LP+I GG+ YI++++
Sbjct: 64 HLIDILEPSDTFSTADYQKMVRGKITEIADRGKLPMIVGGTGLYIQSVL 112
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 10/99 (10%)
Query: 146 QLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPE 205
+L Y + + + VL+ ++ERVD M+E GL++EVK+++D S+ I +AIG E
Sbjct: 189 ELLYNAVLIGLTMDREVLYGRINERVDLMLETGLLDEVKRLYDMNIRDSQSI-QAIGYKE 247
Query: 206 LDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
L +Y LD K+ L A+ ++K+N+ + RQL
Sbjct: 248 LYEY------LDGKVP---LPQAVEQLKQNSRRYAKRQL 277
>sp|B0K1A4|MIAA_THEPX tRNA dimethylallyltransferase OS=Thermoanaerobacter sp. (strain
X514) GN=miaA PE=3 SV=1
Length = 315
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 74/106 (69%)
Query: 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92
++V ++G T +GKS+LA+D+A F EII++D MQVYK +D+ T K+T+EE G+PH+L+
Sbjct: 4 QIVLIVGPTASGKSKLAVDVAKEFNGEIISADSMQVYKYMDVGTAKITKEEMQGIPHYLI 63
Query: 93 GIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
I+EP+ F+ ++ A I+ I R +LPII GG+ YI +++
Sbjct: 64 DIVEPDQEFSVAEYEKRAKEIIKDIYKRGKLPIIVGGTGLYINSII 109
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 162 VLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIRAGSLLDHKIR 221
+L+ +++RVD M++ LVEEV + + +A+G E+ +Y++ G +
Sbjct: 205 ILYDRINQRVDEMIKNNLVEEVVNLLKIGYNKDSTAMQALGYKEIVEYLK-GEI------ 257
Query: 222 AKLLEAAINKIKENTCNLSCRQL 244
LE AI KIK+ T + RQ+
Sbjct: 258 --SLEEAIEKIKKGTRRYAKRQI 278
>sp|B0K9L7|MIAA_THEP3 tRNA dimethylallyltransferase OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=miaA PE=3
SV=1
Length = 315
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 74/106 (69%)
Query: 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92
++V ++G T +GKS+LA+D+A F EII++D MQVYK +D+ T K+T+EE G+PH+L+
Sbjct: 4 QIVLIVGPTASGKSKLAVDVAKEFNGEIISADSMQVYKYMDVGTAKITKEEMQGIPHYLI 63
Query: 93 GIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
I+EP+ F+ ++ A I+ I R +LPII GG+ YI +++
Sbjct: 64 DIVEPDQEFSVAEYEKRAKEIIKDIYKRGKLPIIVGGTGLYINSII 109
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 162 VLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIRAGSLLDHKIR 221
+L+ +++RVD M++ LVEEV + + +A+G E+ +Y++ G +
Sbjct: 205 ILYDRINQRVDEMIKNNLVEEVVNLLKIGYNKDSTAMQALGYKEIVEYLK-GEI------ 257
Query: 222 AKLLEAAINKIKENTCNLSCRQL 244
LE AI KIK+ T + RQ+
Sbjct: 258 --SLEEAIEKIKKGTRRYAKRQI 278
>sp|Q8CQL3|MIAA_STAES tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=miaA PE=1 SV=1
Length = 332
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 79/111 (71%)
Query: 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLG 93
++ ++G T +GK+ L+I++A +F EII+ D MQVY+G+DI T KVT EE G+PH+++
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68
Query: 94 IIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAE 144
I+ P+A+F+A +F+ A I+ I R ++PIIAGG+ YI++L+ A E
Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFE 119
>sp|Q5HPN8|MIAA_STAEQ tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=miaA PE=3 SV=1
Length = 332
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 79/111 (71%)
Query: 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLG 93
++ ++G T +GK+ L+I++A +F EII+ D MQVY+G+DI T KVT EE G+PH+++
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68
Query: 94 IIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAE 144
I+ P+A+F+A +F+ A I+ I R ++PIIAGG+ YI++L+ A E
Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFE 119
>sp|A5GEV6|MIAA2_GEOUR tRNA dimethylallyltransferase 2 OS=Geobacter uraniireducens (strain
Rf4) GN=miaA2 PE=3 SV=1
Length = 310
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 75/110 (68%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K K++ ++G T +GK+ LA+ LA RF EI+N+D MQVY+G+DI T K + + VPHH
Sbjct: 7 KIKLIIIVGPTASGKTELAVRLAERFDGEIVNADSMQVYRGMDIGTAKPSPQLRQRVPHH 66
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
L+ I+ P+ NF+A DFR A+ AI+ I SR + + GG+ YI+AL+ G
Sbjct: 67 LVDIVTPDVNFSAADFRREAAAAIDDIHSRGKSVFVVGGTGLYIRALLQG 116
Score = 38.5 bits (88), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 149 YECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIR--RAIGVPEL 206
Y+C + + V L+ V RV+ M+E GL+ EV+ + +A Y+ ++ R+IG E+
Sbjct: 194 YDCLKIGLRVERQELYRRVESRVEVMIEQGLIAEVEGLL--RAGYTPDLKSMRSIGYKEI 251
Query: 207 DQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNW 256
Y+ LD A+ IK +T + + RQ+ ++ ++ NW
Sbjct: 252 CAYLAGECTLDE---------AVQLIKRDTRHYAKRQMTWFNKDFEI-NW 291
>sp|Q6GHD2|MIAA_STAAR tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MRSA252) GN=miaA PE=3 SV=1
Length = 311
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 76/110 (69%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+GI+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIGILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|A3CNS2|MIAA_STRSV tRNA dimethylallyltransferase OS=Streptococcus sanguinis (strain
SK36) GN=miaA PE=3 SV=1
Length = 294
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K K++ ++G T GK+ L+I++A RF +II+ D QVY+GLDI T K+ EE G+PHH
Sbjct: 2 KTKIIVIVGPTAVGKTALSIEVAKRFNGQIISGDSQQVYRGLDIGTAKIRPEEQEGIPHH 61
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
LL + E +++A DF A+ AI I ++D+LPII GG+ YI++L+ G
Sbjct: 62 LLDVREVGESYSAYDFVTEAAQAIREIAAQDQLPIICGGTGLYIQSLLEG 111
>sp|Q4L610|MIAA_STAHJ tRNA dimethylallyltransferase OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=miaA PE=3 SV=1
Length = 332
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 74/105 (70%)
Query: 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLG 93
+V ++G T +GK+ L+I+LA + EII+ D MQVYK +DI T KVT EE G+PH+++
Sbjct: 9 LVVIVGPTASGKTELSIELAKQINGEIISGDSMQVYKQMDIGTAKVTNEEMDGIPHYMID 68
Query: 94 IIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
I+ P+ +F+ DF+ A IE I SR ++PIIAGG+ YI++L+
Sbjct: 69 ILNPDDSFSVYDFKLRAQALIEDITSRGKIPIIAGGTGLYIQSLI 113
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 144 EFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGV 203
+F Y+ + +++S L+S +++RVD M+ GL EVK + + + ++ + +AIG
Sbjct: 191 QFTENYDTLLIGIEMSRKTLYSRINKRVDIMLGHGLFNEVKNLVEQGYESTQSM-QAIGY 249
Query: 204 PELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
EL + +D A+ +K+++ + RQL
Sbjct: 250 KELVPVVNGELSIDQ---------AVETLKQHSRQYAKRQL 281
>sp|Q04FB0|MIAA_OENOB tRNA dimethylallyltransferase OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=miaA PE=3 SV=1
Length = 257
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 107/194 (55%), Gaps = 17/194 (8%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K+KVV + G T +GKS LAI +A +EII+ D Q+Y+GLDI T K ++++ V HH
Sbjct: 7 KEKVVVIAGPTASGKSDLAIKIAQMIDSEIISEDAFQIYRGLDIGTAKPSKDDLAKVKHH 66
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGD--------- 141
+ I E + +++A +F A + I I S+ ++P+I GGS +++ L+ GD
Sbjct: 67 FIDIKEVDESYSAYEFARDARIVINQISSKKKIPLIVGGSGFFLQTLL-GDRRISDKDNP 125
Query: 142 ----AAEFQLR-YECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRG 196
A + R Y + ++ L+ +++RV+RM E G+V+E + +F Q ++
Sbjct: 126 IVPKKAGIENRLYNALLIGLNTERSQLYDRINQRVERMFEKGIVKEAENLFRQQGNFQS- 184
Query: 197 IRRAIGVPELDQYI 210
++AIG E Y
Sbjct: 185 -KKAIGYREFAGYF 197
>sp|Q03VI2|MIAA_LEUMM tRNA dimethylallyltransferase OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=miaA PE=3
SV=1
Length = 297
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 76/114 (66%)
Query: 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHL 91
+K+V + G T +GKS L+I +A R EI+++D MQ+Y+ LD+ T KVT+EE + VPHHL
Sbjct: 2 NKIVVLTGPTASGKSSLSIQMAQRLNGEIVSADSMQIYRNLDVGTAKVTKEEQNIVPHHL 61
Query: 92 LGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEF 145
+ I++ AN++ DF A I I+SR +LPII GG+ Y+KAL+ E+
Sbjct: 62 IDIVDLTANYSVGDFIIAADKVIADIISRGKLPIIVGGTGLYVKALLGFQELEY 115
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 148 RYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELD 207
+Y+ + +D +L+ ++ RV +MV+ G+++E + + D + + +AIG E
Sbjct: 178 KYDALVIGLDWPRELLYERINHRVTQMVQDGVLKEAQTILDAGGEKLQS-GKAIGYKEFF 236
Query: 208 QYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
Y+R LD AIN++++++ + RQL
Sbjct: 237 PYLRDQVTLDK---------AINQLQQDSRRYAKRQL 264
>sp|B5EGD5|MIAA1_GEOBB tRNA dimethylallyltransferase 1 OS=Geobacter bemidjiensis (strain
Bem / ATCC BAA-1014 / DSM 16622) GN=miaA1 PE=3 SV=1
Length = 306
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPH 89
+K KV+ + G TG+GKS LA+ LA EI+N+D MQVY+ LDI T K + + VPH
Sbjct: 6 KKIKVIVLGGPTGSGKSDLAVKLAEEIGGEIVNADSMQVYRRLDIGTAKPSAADLARVPH 65
Query: 90 HLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
HL+ I++PN +FTA+DFR A+ AI I R + I+ GG+ YI+AL+ G
Sbjct: 66 HLIDILDPNEDFTASDFRREATAAIADIERRGKRAIVVGGTGLYIRALLYG 116
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 149 YECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQ 208
Y+ + + V L+ + RV++M+E GLVEEV+ + + R+IG E+
Sbjct: 190 YQVLKMAIRVERQELYRRIDLRVEKMLEDGLVEEVRLLLAAGYGHELKALRSIGYKEITA 249
Query: 209 YIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNW 256
Y+ AG + L+ A+ IK +T + RQ+ + ND++ W
Sbjct: 250 YL-AGEM--------TLDEAVTLIKRDTRRYAKRQMTWFGKENDIY-W 287
>sp|Q9CHU2|MIAA_LACLA tRNA dimethylallyltransferase OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=miaA PE=3 SV=1
Length = 294
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 134/299 (44%), Gaps = 80/299 (26%)
Query: 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPH 89
+ +KV+ V+G T GK+ L IDLA +F EII+ D QVY+GLDI T KVT E VPH
Sbjct: 2 KNNKVLVVVGPTAVGKTALGIDLAIKFNGEIISGDSQQVYQGLDIGTAKVTMAEQAQVPH 61
Query: 90 HLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV----------- 138
HL+ + + NF+ DF A+ I+ IL + ++PII GG+ YI++L+
Sbjct: 62 HLIDVRKWTENFSVHDFVIEANQLIKEILDQGKVPIIVGGTGLYIQSLIEGYHLGGQENH 121
Query: 139 -------------------------NGDAAEFQLR---------------------YECF 152
N D +E R Y+
Sbjct: 122 EEMMKLREELSLLSDEELFAKVIKINPDISELNRRRAIRFLELQTFGSQDENLGSDYDFL 181
Query: 153 FLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFD--PQADYSRGIRRAIGVPELDQYI 210
+ ++ VL+ +++RVD+M+ GL++E + +++ P+ ++G IG E Y
Sbjct: 182 LIGLNADRKVLYDRINQRVDQMMREGLLDEARTLYEQAPEVQAAKG----IGYKEFFPYF 237
Query: 211 RAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLK 269
+G + LE A+ +K N+ + RQL W N ++ +VF K
Sbjct: 238 -SGDI--------SLEEAVELVKRNSRRYAKRQL--------TWFKNRMSVEFEDVFSK 279
>sp|A0AI95|MIAA_LISW6 tRNA dimethylallyltransferase OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=miaA PE=3
SV=1
Length = 305
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 123/276 (44%), Gaps = 75/276 (27%)
Query: 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLG 93
V+ ++G T GK+ L+I+LA + EII+ D MQVY+GLDI T K+T EE G+ HHL+
Sbjct: 6 VIVIVGPTAVGKTSLSIELAKKLDGEIISGDSMQVYRGLDIGTAKITSEEMCGIKHHLID 65
Query: 94 IIEPNANFTATDFRNHASLAIESILSRDRLP-IIAG--------------GSSSYIKA-- 136
+ + + FTA F++ IESI SR +LP I+ G G+SS KA
Sbjct: 66 VTDASVPFTAAKFQSETMALIESIHSRGKLPIIVGGTGLYIQSVFYDYDFGNSSEDKAFR 125
Query: 137 ------------------------------------------LVNGDAAEFQLR------ 148
L +E+Q+
Sbjct: 126 AKLDSLDKVTLWKMLEQQDPESAKLIHENNKRRVIRALEVIHLTGKPFSEYQVHHKLNDM 185
Query: 149 YECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQ 208
Y+ FL +D+ +L+ +++RVD M E GLV E K+++D I R IG EL
Sbjct: 186 YKPLFLGLDLDRALLYERINQRVDIMFEQGLVSEAKKLYDENLADVPAI-RGIGYKELFT 244
Query: 209 YIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
Y S LE A I++N+ + + RQL
Sbjct: 245 YFEGNS---------TLEEAKELIQKNSRHFAKRQL 271
>sp|Q74BP1|MIAA_GEOSL tRNA dimethylallyltransferase OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=miaA PE=3 SV=1
Length = 311
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 70/110 (63%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K K+V + G T +GKS LA+ LA +++N+D MQVY+G+DI T K + E VPHH
Sbjct: 8 KTKLVIIQGPTASGKSELAVRLAEACGGDVVNADSMQVYRGMDIGTAKPSPELVARVPHH 67
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
L I++P+ NFTA D+R A I I SR + PI+ GG+ YIK L+ G
Sbjct: 68 LYDIVDPDVNFTAADYRREAGRVITEIHSRGKRPILVGGTGLYIKTLIGG 117
>sp|B1MXL9|MIAA_LEUCK tRNA dimethylallyltransferase OS=Leuconostoc citreum (strain KM20)
GN=miaA PE=3 SV=1
Length = 294
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Query: 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92
K+V + G T +GKS LAI +A RF EI+++D MQ+Y+GLDI T KVT+ E VPHHL+
Sbjct: 3 KIVVIAGPTASGKSDLAISVAQRFNGEIVSADAMQIYRGLDIGTAKVTKAERELVPHHLI 62
Query: 93 GIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYEC- 151
I++ F+ +F A I I R +LP+IAGG+ Y+KAL+ +F E
Sbjct: 63 DIVDMTDKFSVAEFVTRADQVINDIAKRGKLPVIAGGTGFYVKALLGQQPLDFVASDEAE 122
Query: 152 FFLWVDVSLPVL-------HSFVSERVD 172
L SLP L + ++ RVD
Sbjct: 123 VALLKQKSLPTLVTMLKAADTILASRVD 150
>sp|B1IAK9|MIAA_STRPI tRNA dimethylallyltransferase OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=miaA PE=3 SV=1
Length = 294
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 74/110 (67%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K K++ ++G T GK+ LAI++A RF E+++ D QVY+GLDI T K + EE VPHH
Sbjct: 2 KTKIIVIVGPTAVGKTALAIEVAKRFNGEVVSGDSQQVYRGLDIGTAKASPEEQAAVPHH 61
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
L+ + E +++A DF + A + IE I SR +L IIAGG+ YI++L+ G
Sbjct: 62 LIDVREITESYSAFDFVSEAKMTIEDIQSRGKLAIIAGGTGLYIQSLLEG 111
>sp|B8ZMQ3|MIAA_STRPJ tRNA dimethylallyltransferase OS=Streptococcus pneumoniae (strain
ATCC 700669 / Spain 23F-1) GN=miaA PE=3 SV=1
Length = 294
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 74/110 (67%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K K++ ++G T GK+ LAI++A RF E+++ D QVY+GLDI T K + EE VPHH
Sbjct: 2 KTKIIVIVGPTAVGKTALAIEVAKRFNGEVVSGDSQQVYRGLDIGTAKASPEEQAAVPHH 61
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
L+ + E +++A DF + A + IE I SR +L IIAGG+ YI++L+ G
Sbjct: 62 LIDVREITESYSAFDFVSEAKMTIEDIQSRGKLAIIAGGTGLYIQSLLEG 111
>sp|Q49X96|MIAA_STAS1 tRNA dimethylallyltransferase OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=miaA PE=3 SV=1
Length = 315
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 8/190 (4%)
Query: 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLG 93
+V ++G T GK+ +I+LA ++ EII+ D MQVYK +DI T K+T +E G+PH ++
Sbjct: 8 IVVLVGPTAVGKTEFSIELAKKYNGEIISGDSMQVYKNMDIGTAKITLDEMSGIPHQMID 67
Query: 94 IIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFF 153
I+EP+ F+A +F+N A I+ I R R+PII GG+ YI++L+ A E + E
Sbjct: 68 ILEPDEPFSAYEFKNRAQKLIKEITHRGRVPIIVGGTGLYIQSLIYDYAFEDETISEAHS 127
Query: 154 LWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIRAG 213
V+ L L ++ + + L +E+ D + + +RRAI Y++
Sbjct: 128 ESVETQLAELDQLSNDELHQY--LASFDEISAQ-DIHPNNRKRVRRAIQY-----YLKTK 179
Query: 214 SLLDHKIRAK 223
LL + + +
Sbjct: 180 KLLSSRKKVQ 189
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 144 EFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGV 203
+F Y+ L +++S +L+ ++ RVD M+E GL+ EVKQ+ + + S+ + +AIG
Sbjct: 190 QFTENYDTLLLGIEMSRDILYQRINTRVDIMLERGLLSEVKQLVENGYETSQSM-QAIGY 248
Query: 204 PELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
E+ I LD A NK+K+++ N + RQ+
Sbjct: 249 KEIVPVINGQISLDE---------ATNKLKQHSRNYAKRQM 280
>sp|P65356|MIAA_STAAW tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain MW2)
GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|A8Z1X3|MIAA_STAAT tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|P65355|MIAA_STAAN tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
N315) GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|P65354|MIAA_STAAM tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=miaA PE=1 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|A6QGK1|MIAA_STAAE tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
Newman) GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|Q5HGC9|MIAA_STAAC tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain COL)
GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|A5ISI5|MIAA_STAA9 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain JH9)
GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|Q2FYZ2|MIAA_STAA8 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain NCTC
8325) GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|Q2FHD6|MIAA_STAA3 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300) GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|A6U1C1|MIAA_STAA2 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain JH1)
GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|A7X1U8|MIAA_STAA1 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain Mu3
/ ATCC 700698) GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|Q8CWS7|MIAA_STRR6 tRNA dimethylallyltransferase OS=Streptococcus pneumoniae (strain
ATCC BAA-255 / R6) GN=miaA PE=3 SV=2
Length = 294
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 74/110 (67%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K K++ ++G T GK+ LAI++A RF E+++ D QVY+GLDI T K + EE VPHH
Sbjct: 2 KTKIIVIVGPTAVGKTALAIEVAKRFNGEVVSGDSQQVYRGLDIGTAKASPEEQAAVPHH 61
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
L+ + E +++A DF + A + IE I SR +L IIAGG+ YI++L+ G
Sbjct: 62 LIDVREITESYSAFDFVSEAKMTIEDIHSRGKLAIIAGGTGLYIQSLLEG 111
>sp|Q04LL6|MIAA_STRP2 tRNA dimethylallyltransferase OS=Streptococcus pneumoniae serotype
2 (strain D39 / NCTC 7466) GN=miaA PE=3 SV=1
Length = 294
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 74/110 (67%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K K++ ++G T GK+ LAI++A RF E+++ D QVY+GLDI T K + EE VPHH
Sbjct: 2 KTKIIVIVGPTAVGKTALAIEVAKRFNGEVVSGDSQQVYRGLDIGTAKASPEEQAAVPHH 61
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNG 140
L+ + E +++A DF + A + IE I SR +L IIAGG+ YI++L+ G
Sbjct: 62 LIDVREITESYSAFDFVSEAKMTIEDIHSRGKLAIIAGGTGLYIQSLLEG 111
>sp|Q6G9R0|MIAA_STAAS tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MSSA476) GN=miaA PE=3 SV=1
Length = 311
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 75/110 (68%)
Query: 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVP 88
+ K +V ++G T +GK+ L+I+LA R EII+ D MQVYK ++I T KVT EE G+P
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
HHL+ I+ P+ F+A +F+ A I I +R ++PIIAGG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
>sp|O31795|MIAA_BACSU tRNA dimethylallyltransferase OS=Bacillus subtilis (strain 168)
GN=miaA PE=3 SV=2
Length = 314
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%)
Query: 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHH 90
K VV ++G T GK+ L+I LA AEII+ D MQ+YKG+DI T K+TE+E GVPHH
Sbjct: 5 KQPVVILVGPTAVGKTNLSIQLAKSLNAEIISGDSMQIYKGMDIGTAKITEQEMEGVPHH 64
Query: 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALV 138
L+ I++P +F+ D+++ I I +R +LP+I GG+ YI++++
Sbjct: 65 LIDILDPQDSFSTADYQSLVRNKISEIANRGKLPMIVGGTGLYIQSVL 112
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 146 QLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPE 205
+L Y + + + L+ +++RVD M++ GL+ EVK+++D + I +AIG E
Sbjct: 189 ELLYNAVLIGLTMDRDTLYERINQRVDLMMQSGLLPEVKRLYDKNVRDCQSI-QAIGYKE 247
Query: 206 LDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQL 244
L Y L A+ ++K+N+ + RQL
Sbjct: 248 LYAYFDGFVTLSD---------AVEQLKQNSRRYAKRQL 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,133,259
Number of Sequences: 539616
Number of extensions: 5018385
Number of successful extensions: 18406
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 16782
Number of HSP's gapped (non-prelim): 1443
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)