Query 020362
Match_columns 327
No_of_seqs 299 out of 2131
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:08:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02748 tRNA dimethylallyltra 100.0 3.4E-71 7.4E-76 552.4 30.1 272 25-299 15-400 (468)
2 PLN02165 adenylate isopentenyl 100.0 6.7E-68 1.4E-72 507.9 27.4 269 28-297 39-334 (334)
3 PRK14729 miaA tRNA delta(2)-is 100.0 1.1E-65 2.4E-70 488.5 23.4 220 30-264 2-288 (300)
4 KOG1384 tRNA delta(2)-isopente 100.0 4.6E-65 1E-69 480.2 22.4 269 31-299 6-298 (348)
5 COG0324 MiaA tRNA delta(2)-iso 100.0 6.7E-64 1.5E-68 475.3 24.0 221 31-265 2-291 (308)
6 TIGR00174 miaA tRNA isopenteny 100.0 4.6E-62 9.9E-67 461.3 22.3 218 34-265 1-286 (287)
7 PRK00091 miaA tRNA delta(2)-is 100.0 7.7E-60 1.7E-64 450.7 23.4 219 30-262 2-287 (307)
8 PLN02840 tRNA dimethylallyltra 100.0 8E-59 1.7E-63 457.1 26.3 226 29-265 18-346 (421)
9 PF01715 IPPT: IPP transferase 100.0 6.6E-53 1.4E-57 393.4 20.5 184 66-263 1-252 (253)
10 PF01745 IPT: Isopentenyl tran 100.0 1.2E-28 2.5E-33 222.4 18.6 214 33-251 2-226 (233)
11 COG0703 AroK Shikimate kinase 99.4 2.2E-13 4.9E-18 120.1 7.8 141 32-211 2-149 (172)
12 COG3265 GntK Gluconate kinase 99.4 2.7E-12 5.9E-17 110.2 10.2 127 38-189 1-130 (161)
13 PRK04220 2-phosphoglycerate ki 99.4 6.2E-12 1.4E-16 120.1 13.5 130 30-174 90-239 (301)
14 PRK00131 aroK shikimate kinase 99.3 5.8E-12 1.3E-16 108.9 10.0 133 30-188 2-137 (175)
15 KOG3354 Gluconate kinase [Carb 99.3 9.8E-12 2.1E-16 107.6 10.6 143 29-189 9-157 (191)
16 PRK00300 gmk guanylate kinase; 99.3 1.5E-12 3.3E-17 116.6 4.3 129 28-172 1-139 (205)
17 PRK13948 shikimate kinase; Pro 99.3 2.3E-11 5E-16 108.6 10.6 131 29-189 7-143 (182)
18 PRK13946 shikimate kinase; Pro 99.2 4.1E-11 8.9E-16 106.5 9.3 131 31-188 9-143 (184)
19 TIGR03263 guanyl_kin guanylate 99.2 4.9E-12 1.1E-16 110.9 3.3 123 33-172 2-135 (180)
20 PRK05057 aroK shikimate kinase 99.2 7.8E-11 1.7E-15 103.9 10.4 134 31-189 3-138 (172)
21 PRK14737 gmk guanylate kinase; 99.2 8.7E-12 1.9E-16 111.5 3.8 124 30-171 2-138 (186)
22 cd00071 GMPK Guanosine monopho 99.2 1.7E-11 3.7E-16 104.3 4.7 110 34-159 1-120 (137)
23 TIGR01313 therm_gnt_kin carboh 99.2 3.1E-10 6.8E-15 98.1 12.4 114 35-173 1-117 (163)
24 COG0194 Gmk Guanylate kinase [ 99.1 2.9E-11 6.3E-16 107.6 4.1 123 31-172 3-137 (191)
25 PF13671 AAA_33: AAA domain; P 99.1 2.7E-10 5.8E-15 95.7 9.0 120 34-173 1-121 (143)
26 PRK11545 gntK gluconate kinase 99.1 1.2E-09 2.7E-14 95.5 12.8 129 38-188 1-129 (163)
27 PRK00625 shikimate kinase; Pro 99.1 2.6E-10 5.6E-15 101.0 8.5 132 34-189 2-134 (173)
28 PF00625 Guanylate_kin: Guanyl 99.1 1.8E-09 3.9E-14 95.6 13.5 117 31-172 1-137 (183)
29 PRK03731 aroL shikimate kinase 99.1 4.9E-10 1.1E-14 97.6 9.3 130 33-189 3-138 (171)
30 PRK13947 shikimate kinase; Pro 99.1 4.5E-10 9.8E-15 97.6 8.7 130 34-188 3-134 (171)
31 PLN02199 shikimate kinase 99.1 2.3E-10 5E-15 109.0 6.8 131 32-189 102-244 (303)
32 PRK13949 shikimate kinase; Pro 99.0 6.4E-10 1.4E-14 97.9 8.4 108 34-169 3-113 (169)
33 PRK06217 hypothetical protein; 99.0 3.3E-09 7.2E-14 94.0 12.8 103 34-171 3-105 (183)
34 cd00464 SK Shikimate kinase (S 99.0 1E-09 2.2E-14 93.3 8.6 111 35-171 2-113 (154)
35 PRK10078 ribose 1,5-bisphospho 99.0 3.7E-09 7.9E-14 93.9 11.6 112 32-171 2-132 (186)
36 PRK09825 idnK D-gluconate kina 99.0 7.4E-09 1.6E-13 91.8 13.4 132 32-188 3-137 (176)
37 cd02021 GntK Gluconate kinase 99.0 2.6E-09 5.6E-14 91.0 10.0 117 34-173 1-121 (150)
38 smart00072 GuKc Guanylate kina 99.0 5.1E-09 1.1E-13 92.9 12.3 124 32-172 2-137 (184)
39 PRK06762 hypothetical protein; 99.0 6E-09 1.3E-13 90.3 11.4 127 31-189 1-133 (166)
40 PRK14021 bifunctional shikimat 99.0 2.5E-09 5.5E-14 110.2 10.2 137 31-189 5-143 (542)
41 PRK14738 gmk guanylate kinase; 98.9 8.7E-10 1.9E-14 99.9 5.5 126 30-172 11-147 (206)
42 COG1102 Cmk Cytidylate kinase 98.9 8.5E-09 1.8E-13 90.1 11.0 116 34-176 2-117 (179)
43 PHA02530 pseT polynucleotide k 98.9 2E-08 4.2E-13 95.2 14.5 129 32-181 2-134 (300)
44 PRK12338 hypothetical protein; 98.9 2.4E-08 5.3E-13 96.3 14.8 140 30-175 2-155 (319)
45 PRK05541 adenylylsulfate kinas 98.9 9.4E-09 2E-13 90.1 10.9 128 29-189 4-138 (176)
46 PRK08154 anaerobic benzoate ca 98.9 1.9E-08 4.1E-13 96.8 12.8 134 29-189 130-269 (309)
47 PF01202 SKI: Shikimate kinase 98.9 2.9E-09 6.4E-14 92.3 6.1 112 41-178 1-113 (158)
48 PRK08118 topology modulation p 98.9 2.1E-08 4.5E-13 88.1 11.2 99 33-171 2-100 (167)
49 cd00227 CPT Chloramphenicol (C 98.9 1.7E-08 3.8E-13 88.6 10.7 128 32-173 2-134 (175)
50 PRK07261 topology modulation p 98.8 1.8E-08 4E-13 88.7 10.1 99 34-171 2-100 (171)
51 PF13207 AAA_17: AAA domain; P 98.8 7.4E-09 1.6E-13 84.7 6.9 33 34-66 1-33 (121)
52 TIGR01360 aden_kin_iso1 adenyl 98.8 1.4E-08 3.1E-13 89.0 9.1 123 32-171 3-128 (188)
53 TIGR03574 selen_PSTK L-seryl-t 98.8 1.7E-08 3.7E-13 93.7 9.7 125 34-188 1-133 (249)
54 PRK03839 putative kinase; Prov 98.8 1.6E-08 3.5E-13 89.0 9.0 100 34-171 2-101 (180)
55 PRK13951 bifunctional shikimat 98.8 9.9E-09 2.2E-13 104.5 8.5 129 34-189 2-130 (488)
56 TIGR01359 UMP_CMP_kin_fam UMP- 98.8 2E-08 4.4E-13 88.1 9.2 119 34-171 1-125 (183)
57 KOG3347 Predicted nucleotide k 98.8 2.4E-08 5.3E-13 86.2 8.9 105 30-171 5-114 (176)
58 PRK06547 hypothetical protein; 98.8 5.5E-08 1.2E-12 86.1 11.5 37 30-66 13-49 (172)
59 PRK14531 adenylate kinase; Pro 98.8 3.2E-08 7E-13 87.7 9.4 35 32-66 2-36 (183)
60 TIGR02322 phosphon_PhnN phosph 98.8 1.1E-08 2.4E-13 89.8 6.1 118 33-172 2-133 (179)
61 PRK08233 hypothetical protein; 98.8 6.5E-08 1.4E-12 84.4 10.8 116 31-171 2-119 (182)
62 PLN02772 guanylate kinase 98.7 1.7E-08 3.6E-13 99.7 6.7 123 31-171 134-269 (398)
63 cd02024 NRK1 Nicotinamide ribo 98.7 6E-08 1.3E-12 87.1 9.6 35 34-68 1-36 (187)
64 PRK12339 2-phosphoglycerate ki 98.7 1.4E-07 3.1E-12 85.3 11.6 132 31-174 2-144 (197)
65 PRK14527 adenylate kinase; Pro 98.7 3.9E-08 8.5E-13 87.6 7.9 39 29-67 3-41 (191)
66 PRK14530 adenylate kinase; Pro 98.7 1.4E-07 2.9E-12 85.7 11.5 36 32-67 3-38 (215)
67 PRK14532 adenylate kinase; Pro 98.7 9.1E-08 2E-12 84.7 9.6 34 34-67 2-35 (188)
68 PRK04182 cytidylate kinase; Pr 98.7 6.1E-08 1.3E-12 84.3 8.3 32 34-65 2-33 (180)
69 PLN02200 adenylate kinase fami 98.7 8.4E-08 1.8E-12 88.9 9.7 125 30-171 41-167 (234)
70 TIGR01663 PNK-3'Pase polynucle 98.7 1E-07 2.2E-12 97.9 10.5 102 28-171 365-469 (526)
71 COG0645 Predicted kinase [Gene 98.7 2.8E-07 6E-12 81.1 11.5 126 33-176 2-130 (170)
72 PRK05480 uridine/cytidine kina 98.7 1.9E-07 4.1E-12 84.2 10.7 40 28-67 2-44 (209)
73 cd02020 CMPK Cytidine monophos 98.6 9.8E-08 2.1E-12 80.1 8.1 104 34-171 1-104 (147)
74 PRK12337 2-phosphoglycerate ki 98.6 6.3E-07 1.4E-11 90.3 14.0 137 30-175 253-409 (475)
75 TIGR01351 adk adenylate kinase 98.6 1.8E-07 3.9E-12 84.6 9.3 121 35-171 2-125 (210)
76 PF06414 Zeta_toxin: Zeta toxi 98.6 3.9E-07 8.5E-12 81.8 11.4 123 29-172 12-143 (199)
77 PRK08356 hypothetical protein; 98.6 4.2E-07 9E-12 81.4 11.5 35 31-66 4-38 (195)
78 cd01428 ADK Adenylate kinase ( 98.6 2.5E-07 5.4E-12 81.6 9.6 32 35-66 2-33 (194)
79 TIGR02173 cyt_kin_arch cytidyl 98.6 2.1E-07 4.5E-12 80.4 8.7 33 34-66 2-34 (171)
80 PRK06696 uridine kinase; Valid 98.6 4.4E-08 9.5E-13 89.6 4.2 38 30-67 20-62 (223)
81 PRK14731 coaE dephospho-CoA ki 98.6 1.3E-07 2.8E-12 85.9 7.0 38 28-66 1-38 (208)
82 PRK00889 adenylylsulfate kinas 98.6 8.5E-07 1.8E-11 77.7 11.8 110 30-167 2-117 (175)
83 PRK00081 coaE dephospho-CoA ki 98.6 6.1E-07 1.3E-11 80.5 11.1 33 33-66 3-35 (194)
84 PRK01184 hypothetical protein; 98.6 2.7E-07 5.9E-12 81.4 8.6 120 33-171 2-125 (184)
85 COG2074 2-phosphoglycerate kin 98.6 2.1E-06 4.5E-11 80.1 14.5 138 29-177 86-237 (299)
86 TIGR00017 cmk cytidylate kinas 98.5 3.8E-07 8.1E-12 83.7 9.4 35 32-66 2-36 (217)
87 PF13238 AAA_18: AAA domain; P 98.5 1E-07 2.2E-12 77.9 4.9 22 35-56 1-22 (129)
88 PRK13477 bifunctional pantoate 98.5 6E-07 1.3E-11 91.9 11.3 41 30-72 282-322 (512)
89 PTZ00088 adenylate kinase 1; P 98.5 7.2E-07 1.6E-11 82.5 10.8 123 34-171 8-131 (229)
90 PTZ00301 uridine kinase; Provi 98.5 3.5E-07 7.5E-12 83.6 8.3 37 31-67 2-45 (210)
91 COG0572 Udk Uridine kinase [Nu 98.5 1.7E-07 3.7E-12 85.8 6.3 51 32-88 8-61 (218)
92 PRK07667 uridine kinase; Provi 98.5 1.3E-07 2.8E-12 84.7 4.8 37 30-66 15-56 (193)
93 PRK00279 adk adenylate kinase; 98.5 5.6E-07 1.2E-11 81.7 8.9 33 34-66 2-34 (215)
94 PRK14528 adenylate kinase; Pro 98.5 5.4E-07 1.2E-11 80.4 8.6 34 33-66 2-35 (186)
95 PRK03846 adenylylsulfate kinas 98.5 1.5E-06 3.3E-11 78.0 11.5 41 27-67 19-64 (198)
96 cd02027 APSK Adenosine 5'-phos 98.5 8.3E-07 1.8E-11 76.4 9.4 116 34-176 1-121 (149)
97 TIGR00455 apsK adenylylsulfate 98.4 1.8E-06 3.9E-11 76.2 11.0 112 28-166 14-132 (184)
98 cd02025 PanK Pantothenate kina 98.4 1.2E-07 2.7E-12 86.9 3.5 34 34-67 1-41 (220)
99 PRK05537 bifunctional sulfate 98.4 1.3E-06 2.9E-11 90.6 11.5 128 31-189 391-528 (568)
100 PRK13808 adenylate kinase; Pro 98.4 6.1E-07 1.3E-11 87.2 8.2 122 35-174 3-131 (333)
101 PF00485 PRK: Phosphoribulokin 98.4 3.5E-07 7.5E-12 81.8 5.8 34 34-67 1-43 (194)
102 TIGR00152 dephospho-CoA kinase 98.4 1.2E-06 2.7E-11 77.7 9.1 34 34-67 1-34 (188)
103 PRK04040 adenylate kinase; Pro 98.4 1.9E-06 4.1E-11 77.3 9.9 35 32-66 2-38 (188)
104 cd02028 UMPK_like Uridine mono 98.4 1.4E-06 3E-11 77.4 8.9 37 34-70 1-42 (179)
105 COG3709 Uncharacterized compon 98.4 2.9E-06 6.3E-11 74.4 10.4 115 31-172 4-137 (192)
106 PLN02348 phosphoribulokinase 98.4 2.3E-06 4.9E-11 84.8 10.9 40 30-69 47-106 (395)
107 COG1936 Predicted nucleotide k 98.3 1.3E-06 2.9E-11 77.2 7.4 104 33-171 1-104 (180)
108 PRK02496 adk adenylate kinase; 98.3 1.4E-06 3E-11 76.9 7.7 33 34-66 3-35 (184)
109 TIGR00235 udk uridine kinase. 98.3 3.5E-07 7.6E-12 82.6 3.7 37 30-66 4-43 (207)
110 PRK15453 phosphoribulokinase; 98.3 3.5E-06 7.6E-11 80.2 10.5 42 28-69 1-47 (290)
111 cd02022 DPCK Dephospho-coenzym 98.3 5.9E-06 1.3E-10 73.0 11.3 32 34-66 1-32 (179)
112 PF08433 KTI12: Chromatin asso 98.3 3.9E-06 8.4E-11 79.5 10.5 131 33-189 2-139 (270)
113 TIGR00554 panK_bact pantothena 98.3 4.9E-07 1.1E-11 86.5 3.9 39 29-67 59-104 (290)
114 PF01583 APS_kinase: Adenylyls 98.3 7.4E-06 1.6E-10 71.6 10.8 105 31-166 1-116 (156)
115 PRK14730 coaE dephospho-CoA ki 98.3 4.7E-06 1E-10 75.0 9.9 35 33-67 2-36 (195)
116 PF07931 CPT: Chloramphenicol 98.3 4.7E-06 1E-10 74.0 9.6 122 33-175 2-135 (174)
117 COG4088 Predicted nucleotide k 98.3 3.9E-06 8.5E-11 76.4 9.0 131 33-188 2-139 (261)
118 PRK05800 cobU adenosylcobinami 98.3 1.3E-06 2.9E-11 77.1 5.5 90 34-138 3-93 (170)
119 COG0283 Cmk Cytidylate kinase 98.3 1.2E-05 2.7E-10 73.4 11.8 39 32-72 4-42 (222)
120 PRK05439 pantothenate kinase; 98.2 3.8E-07 8.3E-12 87.9 2.0 39 29-67 83-128 (311)
121 cd02023 UMPK Uridine monophosp 98.2 5.1E-06 1.1E-10 74.1 8.6 33 34-66 1-36 (198)
122 PRK11860 bifunctional 3-phosph 98.2 3.8E-06 8.3E-11 88.7 8.5 39 32-72 442-480 (661)
123 PRK14734 coaE dephospho-CoA ki 98.2 8.5E-06 1.9E-10 73.6 9.6 33 33-66 2-34 (200)
124 PLN02459 probable adenylate ki 98.2 1.4E-05 3E-10 75.3 10.8 125 31-171 28-154 (261)
125 PRK09270 nucleoside triphospha 98.2 2.2E-05 4.7E-10 72.1 11.9 38 30-67 31-74 (229)
126 PRK07429 phosphoribulokinase; 98.2 1.2E-05 2.6E-10 78.2 10.5 39 29-67 5-46 (327)
127 PRK00698 tmk thymidylate kinas 98.2 8.5E-06 1.9E-10 72.4 8.8 27 31-57 2-28 (205)
128 PLN02674 adenylate kinase 98.1 1.1E-05 2.4E-10 75.4 8.9 38 30-67 29-66 (244)
129 TIGR03575 selen_PSTK_euk L-ser 98.1 4.3E-06 9.3E-11 81.6 6.2 34 34-67 1-40 (340)
130 PRK05506 bifunctional sulfate 98.1 1.4E-05 3.1E-10 83.9 10.5 113 27-167 455-575 (632)
131 COG1072 CoaA Panthothenate kin 98.1 3.1E-06 6.6E-11 79.9 4.8 126 29-173 79-234 (283)
132 PRK14733 coaE dephospho-CoA ki 98.1 2.5E-05 5.5E-10 71.1 10.3 37 31-67 5-41 (204)
133 cd01672 TMPK Thymidine monopho 98.1 3.2E-05 6.9E-10 67.8 10.7 24 33-56 1-24 (200)
134 PRK05416 glmZ(sRNA)-inactivati 98.1 5E-05 1.1E-09 72.6 12.6 29 31-60 5-33 (288)
135 PRK14526 adenylate kinase; Pro 98.1 2.5E-05 5.5E-10 71.3 9.9 33 35-67 3-35 (211)
136 PRK00023 cmk cytidylate kinase 98.1 1.5E-05 3.2E-10 73.5 8.3 36 31-66 3-38 (225)
137 PRK03333 coaE dephospho-CoA ki 98.1 1.4E-05 3E-10 79.6 8.6 34 33-67 2-35 (395)
138 cd02030 NDUO42 NADH:Ubiquinone 98.1 7.2E-05 1.6E-09 68.3 12.6 32 34-65 1-32 (219)
139 PLN02422 dephospho-CoA kinase 98.0 3.2E-05 6.9E-10 71.8 10.3 34 33-67 2-35 (232)
140 COG1428 Deoxynucleoside kinase 98.0 5.6E-05 1.2E-09 69.0 11.5 31 31-61 3-33 (216)
141 PF01121 CoaE: Dephospho-CoA k 98.0 2.8E-05 6E-10 69.4 9.4 33 34-67 2-34 (180)
142 PRK06761 hypothetical protein; 98.0 5E-05 1.1E-09 72.4 11.7 134 32-188 3-145 (282)
143 PLN02318 phosphoribulokinase/u 98.0 4E-06 8.6E-11 86.8 4.4 37 31-67 64-101 (656)
144 PTZ00451 dephospho-CoA kinase; 98.0 5.5E-05 1.2E-09 70.7 11.1 35 33-67 2-36 (244)
145 cd01673 dNK Deoxyribonucleosid 98.0 8.1E-05 1.7E-09 66.0 11.6 28 34-61 1-28 (193)
146 KOG2702 Predicted panthothenat 98.0 8E-06 1.7E-10 75.5 4.8 138 30-188 117-297 (323)
147 PRK09518 bifunctional cytidyla 98.0 4.2E-05 9E-10 81.6 10.6 37 34-72 3-39 (712)
148 PRK13975 thymidylate kinase; P 98.0 0.00011 2.4E-09 65.1 11.7 28 32-59 2-29 (196)
149 PRK13973 thymidylate kinase; P 97.9 3.9E-05 8.4E-10 69.8 8.3 31 32-62 3-36 (213)
150 TIGR00041 DTMP_kinase thymidyl 97.9 3.9E-05 8.5E-10 67.9 7.6 27 32-58 3-29 (195)
151 KOG0707 Guanylate kinase [Nucl 97.9 5.7E-05 1.2E-09 69.6 8.5 127 33-175 38-175 (231)
152 cd02026 PRK Phosphoribulokinas 97.9 7.1E-05 1.5E-09 71.0 9.4 34 34-67 1-37 (273)
153 COG4639 Predicted kinase [Gene 97.9 6.9E-05 1.5E-09 65.4 8.4 113 32-170 2-117 (168)
154 COG0563 Adk Adenylate kinase a 97.9 1.1E-05 2.4E-10 71.8 3.5 33 34-66 2-34 (178)
155 PRK14529 adenylate kinase; Pro 97.9 6E-05 1.3E-09 69.6 8.4 32 34-65 2-33 (223)
156 PF00406 ADK: Adenylate kinase 97.9 2.1E-05 4.6E-10 67.2 5.0 30 37-66 1-30 (151)
157 TIGR02881 spore_V_K stage V sp 97.8 0.00013 2.7E-09 68.4 10.0 26 31-56 41-66 (261)
158 PRK14732 coaE dephospho-CoA ki 97.8 7.3E-05 1.6E-09 67.5 7.5 33 34-67 1-33 (196)
159 PF00004 AAA: ATPase family as 97.8 2.8E-05 6.1E-10 63.6 4.1 34 35-68 1-34 (132)
160 PRK06893 DNA replication initi 97.7 0.00013 2.9E-09 67.0 8.9 91 32-131 39-134 (229)
161 COG0529 CysC Adenylylsulfate k 97.7 0.00018 3.9E-09 64.2 9.2 112 28-166 19-137 (197)
162 PLN02924 thymidylate kinase 97.7 0.00024 5.2E-09 65.3 10.4 29 30-58 14-42 (220)
163 KOG3308 Uncharacterized protei 97.7 7.3E-05 1.6E-09 67.8 6.7 38 31-70 3-41 (225)
164 KOG3079 Uridylate kinase/adeny 97.7 0.00024 5.2E-09 63.6 9.7 128 29-172 5-135 (195)
165 PHA00729 NTP-binding motif con 97.7 0.00016 3.4E-09 66.9 8.8 25 33-57 18-42 (226)
166 COG0237 CoaE Dephospho-CoA kin 97.7 0.00031 6.7E-09 63.9 10.4 35 32-67 2-36 (201)
167 PLN02842 nucleotide kinase 97.7 0.00013 2.8E-09 74.6 8.5 120 36-171 1-122 (505)
168 PF00448 SRP54: SRP54-type pro 97.7 3.6E-05 7.7E-10 69.6 3.8 36 32-67 1-41 (196)
169 PRK08084 DNA replication initi 97.6 0.00034 7.3E-09 64.7 10.0 130 31-171 44-180 (235)
170 PF13189 Cytidylate_kin2: Cyti 97.6 0.00024 5.2E-09 63.0 8.5 126 34-170 1-134 (179)
171 PF13173 AAA_14: AAA domain 97.6 8.9E-05 1.9E-09 61.8 5.3 38 32-69 2-43 (128)
172 PRK06620 hypothetical protein; 97.6 0.00032 6.8E-09 64.2 8.9 30 33-62 45-74 (214)
173 COG0396 sufC Cysteine desulfur 97.6 0.00014 2.9E-09 67.4 6.3 80 30-114 28-109 (251)
174 smart00382 AAA ATPases associa 97.6 7.8E-05 1.7E-09 59.8 4.2 28 32-59 2-29 (148)
175 cd02019 NK Nucleoside/nucleoti 97.5 0.00011 2.3E-09 55.1 3.9 23 34-56 1-23 (69)
176 KOG3877 NADH:ubiquinone oxidor 97.5 0.0019 4.1E-08 61.4 12.4 155 27-188 66-260 (393)
177 PF06309 Torsin: Torsin; Inte 97.4 0.00064 1.4E-08 57.4 8.0 73 29-123 50-122 (127)
178 PRK09087 hypothetical protein; 97.4 0.0013 2.8E-08 60.6 10.6 34 32-65 44-77 (226)
179 PRK13976 thymidylate kinase; P 97.4 0.00039 8.4E-09 63.4 6.7 25 33-57 1-25 (209)
180 cd00544 CobU Adenosylcobinamid 97.3 0.00025 5.5E-09 62.6 4.8 90 34-139 1-91 (169)
181 cd02029 PRK_like Phosphoribulo 97.3 0.00016 3.4E-09 68.6 3.3 37 34-70 1-42 (277)
182 PF07728 AAA_5: AAA domain (dy 97.3 0.0002 4.4E-09 60.0 3.6 27 35-61 2-28 (139)
183 PRK13974 thymidylate kinase; P 97.3 0.00093 2E-08 60.7 8.0 26 32-57 3-28 (212)
184 PRK14956 DNA polymerase III su 97.3 0.0041 8.8E-08 63.5 13.2 28 32-59 40-67 (484)
185 cd00009 AAA The AAA+ (ATPases 97.3 0.00031 6.7E-09 57.1 4.2 35 31-65 18-55 (151)
186 TIGR00390 hslU ATP-dependent p 97.3 0.00026 5.6E-09 71.0 4.4 38 31-68 46-83 (441)
187 PRK05201 hslU ATP-dependent pr 97.2 0.00025 5.5E-09 71.1 3.9 36 32-67 50-85 (443)
188 COG2256 MGS1 ATPase related to 97.2 0.00072 1.6E-08 67.0 6.9 186 31-247 47-250 (436)
189 COG1219 ClpX ATP-dependent pro 97.2 0.00036 7.7E-09 67.5 3.9 36 32-67 97-132 (408)
190 COG2019 AdkA Archaeal adenylat 97.2 0.0028 6E-08 56.2 9.0 139 32-188 4-148 (189)
191 PRK08099 bifunctional DNA-bind 97.2 0.00038 8.2E-09 69.5 4.2 32 31-62 218-249 (399)
192 KOG0744 AAA+-type ATPase [Post 97.1 0.0015 3.3E-08 63.3 7.9 28 32-59 177-204 (423)
193 PRK08903 DnaA regulatory inact 97.1 0.0042 9.2E-08 56.5 10.5 36 31-66 41-81 (227)
194 PF07724 AAA_2: AAA domain (Cd 97.1 0.00049 1.1E-08 60.9 4.0 34 32-65 3-40 (171)
195 TIGR01425 SRP54_euk signal rec 97.1 0.0011 2.4E-08 66.7 7.0 38 30-67 98-140 (429)
196 CHL00181 cbbX CbbX; Provisiona 97.1 0.0032 7E-08 60.1 9.8 25 32-56 59-83 (287)
197 COG0125 Tmk Thymidylate kinase 97.1 0.0018 3.9E-08 59.2 7.6 131 31-173 2-151 (208)
198 PF13521 AAA_28: AAA domain; P 97.1 0.00048 1E-08 59.5 3.6 26 35-61 2-27 (163)
199 KOG3220 Similar to bacterial d 97.1 0.0037 8E-08 56.9 9.3 34 33-67 2-35 (225)
200 PF05496 RuvB_N: Holliday junc 97.1 0.00097 2.1E-08 61.7 5.7 30 32-61 50-79 (233)
201 PRK06645 DNA polymerase III su 97.1 0.0088 1.9E-07 61.6 13.3 29 31-59 42-70 (507)
202 CHL00195 ycf46 Ycf46; Provisio 97.1 0.001 2.2E-08 68.2 6.3 41 30-70 257-297 (489)
203 KOG1969 DNA replication checkp 97.0 0.0022 4.8E-08 67.7 8.7 34 29-62 323-356 (877)
204 COG1220 HslU ATP-dependent pro 97.0 0.00051 1.1E-08 66.9 3.7 36 30-65 48-83 (444)
205 COG1419 FlhF Flagellar GTP-bin 97.0 0.00052 1.1E-08 68.2 3.8 37 31-67 202-245 (407)
206 TIGR03499 FlhF flagellar biosy 97.0 0.00074 1.6E-08 64.2 4.7 37 30-66 192-235 (282)
207 PRK12269 bifunctional cytidyla 97.0 0.00054 1.2E-08 74.4 4.1 38 33-72 35-72 (863)
208 PF00308 Bac_DnaA: Bacterial d 97.0 0.0034 7.4E-08 57.5 8.8 133 33-170 35-177 (219)
209 PRK07933 thymidylate kinase; V 97.0 0.002 4.4E-08 58.8 7.1 25 33-57 1-25 (213)
210 cd01918 HprK_C HprK/P, the bif 97.0 0.00068 1.5E-08 58.9 3.7 39 31-70 13-51 (149)
211 PRK00149 dnaA chromosomal repl 97.0 0.016 3.5E-07 58.5 14.1 147 33-189 149-310 (450)
212 PRK13342 recombination factor 97.0 0.0072 1.6E-07 60.4 11.4 34 31-64 35-68 (413)
213 PLN02796 D-glycerate 3-kinase 96.9 0.00098 2.1E-08 65.3 4.7 38 30-67 98-140 (347)
214 PRK10867 signal recognition pa 96.9 0.0019 4.2E-08 65.1 6.9 38 30-67 98-141 (433)
215 PRK05342 clpX ATP-dependent pr 96.9 0.00076 1.7E-08 67.6 4.0 36 32-67 108-143 (412)
216 PRK07764 DNA polymerase III su 96.9 0.011 2.3E-07 64.3 13.0 29 31-59 36-64 (824)
217 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0007 1.5E-08 66.6 3.6 28 30-57 76-103 (361)
218 PRK05642 DNA replication initi 96.9 0.0065 1.4E-07 56.1 9.6 127 33-171 46-179 (234)
219 PRK14722 flhF flagellar biosyn 96.9 0.0032 7E-08 62.4 8.0 39 29-67 134-179 (374)
220 PRK14961 DNA polymerase III su 96.9 0.0079 1.7E-07 59.2 10.7 28 31-58 37-64 (363)
221 COG4619 ABC-type uncharacteriz 96.9 0.00094 2E-08 59.5 3.5 44 29-77 26-70 (223)
222 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0013 2.8E-08 56.1 4.2 38 30-67 20-58 (133)
223 PF13401 AAA_22: AAA domain; P 96.8 0.00078 1.7E-08 55.2 2.8 26 31-56 3-28 (131)
224 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0028 6E-08 65.9 7.0 42 31-72 222-263 (802)
225 PRK12723 flagellar biosynthesi 96.8 0.0012 2.6E-08 65.7 4.3 38 30-67 172-218 (388)
226 PRK09169 hypothetical protein; 96.8 0.0017 3.7E-08 75.1 6.0 114 32-174 2110-2224(2316)
227 PRK14962 DNA polymerase III su 96.8 0.0076 1.6E-07 61.6 10.1 27 32-58 36-62 (472)
228 TIGR00382 clpX endopeptidase C 96.8 0.0013 2.7E-08 66.1 4.3 35 32-66 116-150 (413)
229 PRK11889 flhF flagellar biosyn 96.8 0.0013 2.9E-08 65.6 4.4 36 30-65 239-279 (436)
230 cd01131 PilT Pilus retraction 96.8 0.001 2.2E-08 59.8 3.3 25 33-57 2-26 (198)
231 PRK14086 dnaA chromosomal repl 96.8 0.031 6.8E-07 58.7 14.6 146 33-189 315-476 (617)
232 TIGR00959 ffh signal recogniti 96.8 0.0028 6E-08 64.0 6.5 38 30-67 97-140 (428)
233 cd00820 PEPCK_HprK Phosphoenol 96.8 0.0016 3.4E-08 53.5 3.8 24 30-53 13-36 (107)
234 TIGR02640 gas_vesic_GvpN gas v 96.7 0.0014 3.1E-08 61.4 4.0 30 32-61 21-50 (262)
235 TIGR02880 cbbX_cfxQ probable R 96.7 0.0074 1.6E-07 57.5 8.9 24 33-56 59-82 (284)
236 PF02223 Thymidylate_kin: Thym 96.7 0.0029 6.2E-08 55.7 5.5 24 149-172 118-141 (186)
237 PLN00020 ribulose bisphosphate 96.7 0.0016 3.5E-08 64.4 4.3 43 29-71 145-187 (413)
238 PRK12724 flagellar biosynthesi 96.7 0.0012 2.6E-08 66.3 3.4 37 31-67 222-264 (432)
239 COG1618 Predicted nucleotide k 96.7 0.0042 9.2E-08 54.8 6.4 27 30-56 3-29 (179)
240 PF01591 6PF2K: 6-phosphofruct 96.7 0.0084 1.8E-07 55.4 8.7 38 28-65 8-50 (222)
241 PF03215 Rad17: Rad17 cell cyc 96.7 0.0018 3.8E-08 66.9 4.6 32 31-62 44-75 (519)
242 TIGR00064 ftsY signal recognit 96.7 0.0017 3.7E-08 61.6 4.2 27 30-56 70-96 (272)
243 PRK03992 proteasome-activating 96.7 0.0015 3.2E-08 64.9 4.0 37 30-66 163-199 (389)
244 PLN03046 D-glycerate 3-kinase; 96.7 0.002 4.4E-08 64.7 4.8 37 31-67 211-252 (460)
245 PTZ00202 tuzin; Provisional 96.7 0.0033 7.2E-08 63.6 6.2 85 31-131 285-374 (550)
246 PRK04195 replication factor C 96.7 0.0019 4.2E-08 65.8 4.7 33 32-64 39-71 (482)
247 cd03115 SRP The signal recogni 96.7 0.0023 5E-08 55.7 4.5 33 34-66 2-39 (173)
248 PRK10416 signal recognition pa 96.6 0.0019 4.1E-08 62.7 4.2 36 30-65 112-152 (318)
249 PRK08727 hypothetical protein; 96.6 0.014 3.1E-07 53.8 9.9 24 32-55 41-64 (233)
250 PRK11784 tRNA 2-selenouridine 96.6 0.019 4.1E-07 56.4 11.1 109 30-167 139-253 (345)
251 TIGR01242 26Sp45 26S proteasom 96.6 0.0022 4.9E-08 62.8 4.6 36 31-66 155-190 (364)
252 PF06068 TIP49: TIP49 C-termin 96.6 0.0022 4.9E-08 63.2 4.4 40 31-70 49-90 (398)
253 TIGR00635 ruvB Holliday juncti 96.6 0.0024 5.2E-08 60.6 4.5 30 31-60 29-58 (305)
254 PRK08691 DNA polymerase III su 96.6 0.04 8.7E-07 58.7 13.8 29 31-59 37-65 (709)
255 PRK14952 DNA polymerase III su 96.6 0.043 9.4E-07 57.5 14.0 29 31-59 34-62 (584)
256 COG1341 Predicted GTPase or GT 96.6 0.013 2.7E-07 58.3 9.4 89 30-120 71-171 (398)
257 PRK12726 flagellar biosynthesi 96.6 0.0025 5.3E-08 63.4 4.4 37 30-66 204-245 (407)
258 TIGR00750 lao LAO/AO transport 96.5 0.0094 2E-07 57.1 8.2 37 30-66 32-73 (300)
259 PRK12323 DNA polymerase III su 96.5 0.019 4.1E-07 60.8 11.0 28 31-58 37-64 (700)
260 PF13245 AAA_19: Part of AAA d 96.5 0.0021 4.6E-08 49.3 3.1 26 31-56 9-34 (76)
261 PF03668 ATP_bind_2: P-loop AT 96.5 0.016 3.5E-07 55.3 9.6 28 33-61 2-29 (284)
262 PF07475 Hpr_kinase_C: HPr Ser 96.5 0.0025 5.5E-08 56.4 3.9 39 31-70 17-55 (171)
263 PRK12422 chromosomal replicati 96.5 0.014 2.9E-07 59.3 9.7 147 33-188 142-300 (445)
264 TIGR01650 PD_CobS cobaltochela 96.5 0.0021 4.6E-08 62.5 3.7 30 32-61 64-93 (327)
265 PRK14088 dnaA chromosomal repl 96.5 0.014 3.1E-07 59.0 9.8 24 33-56 131-154 (440)
266 PHA02624 large T antigen; Prov 96.5 0.003 6.4E-08 66.0 4.9 42 30-71 429-474 (647)
267 PRK14951 DNA polymerase III su 96.5 0.041 8.8E-07 58.0 13.3 29 30-58 36-64 (618)
268 TIGR00362 DnaA chromosomal rep 96.5 0.015 3.2E-07 57.9 9.6 24 33-56 137-160 (405)
269 PRK00080 ruvB Holliday junctio 96.5 0.0027 5.8E-08 61.4 4.1 31 31-61 50-80 (328)
270 PRK10751 molybdopterin-guanine 96.5 0.0024 5.2E-08 56.8 3.5 27 31-57 5-31 (173)
271 cd01130 VirB11-like_ATPase Typ 96.5 0.0025 5.5E-08 56.5 3.6 29 29-57 22-50 (186)
272 PRK14955 DNA polymerase III su 96.5 0.019 4.1E-07 57.2 10.0 29 31-59 37-65 (397)
273 PF13191 AAA_16: AAA ATPase do 96.4 0.0021 4.5E-08 55.6 2.8 29 29-57 21-49 (185)
274 KOG3062 RNA polymerase II elon 96.4 0.0097 2.1E-07 55.2 7.1 136 33-188 2-143 (281)
275 PHA02244 ATPase-like protein 96.4 0.0026 5.7E-08 62.9 3.7 34 31-64 118-151 (383)
276 PRK14958 DNA polymerase III su 96.4 0.02 4.3E-07 59.1 10.2 29 31-59 37-65 (509)
277 KOG0745 Putative ATP-dependent 96.4 0.0027 5.9E-08 63.6 3.7 37 32-68 226-262 (564)
278 PTZ00454 26S protease regulato 96.4 0.0035 7.6E-08 62.7 4.5 36 30-65 177-212 (398)
279 PTZ00361 26 proteosome regulat 96.4 0.0033 7.1E-08 63.6 4.3 35 30-64 215-249 (438)
280 PF02367 UPF0079: Uncharacteri 96.4 0.0039 8.4E-08 52.4 4.0 34 30-63 13-47 (123)
281 TIGR03015 pepcterm_ATPase puta 96.4 0.0039 8.4E-08 57.7 4.4 27 31-57 42-68 (269)
282 PRK13851 type IV secretion sys 96.4 0.0024 5.2E-08 62.6 3.1 28 30-57 160-187 (344)
283 COG1126 GlnQ ABC-type polar am 96.4 0.0028 6E-08 58.4 3.2 25 29-53 25-49 (240)
284 PRK00771 signal recognition pa 96.4 0.0034 7.5E-08 63.4 4.2 38 30-67 93-135 (437)
285 TIGR01241 FtsH_fam ATP-depende 96.4 0.0036 7.7E-08 64.1 4.4 37 30-66 86-122 (495)
286 PRK07003 DNA polymerase III su 96.3 0.067 1.5E-06 57.5 13.7 29 31-59 37-65 (830)
287 PRK07994 DNA polymerase III su 96.3 0.018 3.8E-07 61.0 9.4 29 31-59 37-65 (647)
288 COG2087 CobU Adenosyl cobinami 96.3 0.0054 1.2E-07 54.2 4.7 92 33-139 1-93 (175)
289 COG0466 Lon ATP-dependent Lon 96.3 0.0031 6.6E-08 66.5 3.7 33 30-62 348-380 (782)
290 cd01120 RecA-like_NTPases RecA 96.3 0.0033 7.2E-08 52.5 3.2 23 34-56 1-23 (165)
291 PRK14949 DNA polymerase III su 96.3 0.025 5.5E-07 61.6 10.6 30 30-59 36-65 (944)
292 PRK09435 membrane ATPase/prote 96.3 0.014 3.1E-07 57.0 8.0 43 29-71 53-100 (332)
293 TIGR01526 nadR_NMN_Atrans nico 96.3 0.0038 8.3E-08 60.7 4.0 31 32-62 162-192 (325)
294 PF00910 RNA_helicase: RNA hel 96.3 0.0025 5.4E-08 51.7 2.3 23 35-57 1-23 (107)
295 PF13555 AAA_29: P-loop contai 96.3 0.0053 1.1E-07 45.6 3.8 24 32-55 23-46 (62)
296 PRK12727 flagellar biosynthesi 96.3 0.0041 8.9E-08 64.2 4.3 38 30-67 348-392 (559)
297 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0033 7.2E-08 61.9 3.5 27 30-56 132-158 (358)
298 PRK05703 flhF flagellar biosyn 96.3 0.0034 7.4E-08 63.2 3.6 35 32-66 221-262 (424)
299 PF05729 NACHT: NACHT domain 96.3 0.0032 7E-08 53.1 2.9 24 33-56 1-24 (166)
300 COG1136 SalX ABC-type antimicr 96.3 0.0035 7.6E-08 58.0 3.3 28 27-54 26-53 (226)
301 PRK06647 DNA polymerase III su 96.2 0.072 1.6E-06 55.7 13.1 29 31-59 37-65 (563)
302 PRK14974 cell division protein 96.2 0.0048 1E-07 60.4 4.0 26 31-56 139-164 (336)
303 PF00437 T2SE: Type II/IV secr 96.2 0.0048 1E-07 57.7 3.9 28 31-58 126-153 (270)
304 TIGR02782 TrbB_P P-type conjug 96.2 0.0061 1.3E-07 58.6 4.7 26 31-56 131-156 (299)
305 COG2805 PilT Tfp pilus assembl 96.2 0.031 6.7E-07 54.0 9.2 29 29-57 122-150 (353)
306 PRK10865 protein disaggregatio 96.2 0.013 2.8E-07 64.0 7.7 27 30-56 197-223 (857)
307 PRK14960 DNA polymerase III su 96.2 0.032 6.9E-07 59.1 10.2 29 31-59 36-64 (702)
308 PRK06995 flhF flagellar biosyn 96.2 0.0049 1.1E-07 63.1 4.1 36 30-65 254-296 (484)
309 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.0049 1.1E-07 55.5 3.8 27 30-56 36-62 (226)
310 PF03205 MobB: Molybdopterin g 96.2 0.0039 8.6E-08 53.3 2.9 24 33-56 1-24 (140)
311 PHA02544 44 clamp loader, smal 96.2 0.0055 1.2E-07 58.4 4.2 31 31-61 42-72 (316)
312 PF03029 ATP_bind_1: Conserved 96.1 0.0033 7.1E-08 58.5 2.5 31 37-67 1-36 (238)
313 PRK14721 flhF flagellar biosyn 96.1 0.0066 1.4E-07 61.1 4.8 38 30-67 189-233 (420)
314 KOG0737 AAA+-type ATPase [Post 96.1 0.0042 9.1E-08 61.0 3.2 37 28-64 123-159 (386)
315 PRK14954 DNA polymerase III su 96.1 0.039 8.4E-07 58.2 10.5 29 31-59 37-65 (620)
316 PRK13768 GTPase; Provisional 96.1 0.0066 1.4E-07 56.8 4.3 34 32-65 2-40 (253)
317 PRK14957 DNA polymerase III su 96.1 0.095 2.1E-06 54.5 13.1 28 31-58 37-64 (546)
318 PRK05973 replicative DNA helic 96.1 0.0068 1.5E-07 56.5 4.2 26 30-55 62-87 (237)
319 PRK06526 transposase; Provisio 96.0 0.0051 1.1E-07 57.8 3.3 29 28-56 94-122 (254)
320 cd01394 radB RadB. The archaea 96.0 0.0073 1.6E-07 54.5 4.2 27 30-56 17-43 (218)
321 PRK11034 clpA ATP-dependent Cl 96.0 0.006 1.3E-07 65.7 4.2 32 33-64 489-520 (758)
322 TIGR02639 ClpA ATP-dependent C 96.0 0.015 3.1E-07 62.5 7.1 35 31-65 202-246 (731)
323 PRK14965 DNA polymerase III su 96.0 0.13 2.8E-06 53.8 14.0 29 31-59 37-65 (576)
324 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.0075 1.6E-07 45.9 3.6 33 34-66 1-36 (99)
325 CHL00095 clpC Clp protease ATP 96.0 0.015 3.2E-07 63.2 7.2 39 30-68 198-246 (821)
326 TIGR02397 dnaX_nterm DNA polym 96.0 0.047 1E-06 52.7 10.0 29 31-59 35-63 (355)
327 PRK14969 DNA polymerase III su 96.0 0.033 7.2E-07 57.7 9.4 29 31-59 37-65 (527)
328 TIGR01618 phage_P_loop phage n 96.0 0.0064 1.4E-07 56.1 3.7 34 30-65 10-43 (220)
329 PRK14950 DNA polymerase III su 96.0 0.035 7.5E-07 58.2 9.6 29 31-59 37-65 (585)
330 COG0464 SpoVK ATPases of the A 96.0 0.0076 1.6E-07 61.4 4.6 37 30-66 274-310 (494)
331 COG1117 PstB ABC-type phosphat 96.0 0.0072 1.6E-07 55.8 3.9 28 29-56 30-57 (253)
332 TIGR01420 pilT_fam pilus retra 96.0 0.0058 1.3E-07 59.7 3.6 28 30-57 120-147 (343)
333 PRK13833 conjugal transfer pro 96.0 0.0055 1.2E-07 59.7 3.3 26 31-56 143-168 (323)
334 PRK13900 type IV secretion sys 96.0 0.0056 1.2E-07 59.8 3.4 28 31-58 159-186 (332)
335 PRK12402 replication factor C 96.0 0.0068 1.5E-07 57.9 3.9 25 33-57 37-61 (337)
336 PF08303 tRNA_lig_kinase: tRNA 96.0 0.0061 1.3E-07 53.8 3.2 33 34-66 1-34 (168)
337 CHL00176 ftsH cell division pr 95.9 0.0075 1.6E-07 63.8 4.4 37 31-67 215-251 (638)
338 PRK04296 thymidine kinase; Pro 95.9 0.006 1.3E-07 54.5 3.2 25 32-56 2-26 (190)
339 PF07726 AAA_3: ATPase family 95.9 0.0061 1.3E-07 51.8 2.9 27 35-61 2-28 (131)
340 PTZ00322 6-phosphofructo-2-kin 95.9 0.071 1.5E-06 56.7 11.7 35 32-66 215-249 (664)
341 PF00005 ABC_tran: ABC transpo 95.9 0.0049 1.1E-07 51.1 2.3 28 29-56 8-35 (137)
342 TIGR03167 tRNA_sel_U_synt tRNA 95.9 0.051 1.1E-06 52.6 9.6 40 31-71 126-165 (311)
343 PF04665 Pox_A32: Poxvirus A32 95.9 0.016 3.5E-07 54.2 5.9 30 28-57 9-38 (241)
344 TIGR00176 mobB molybdopterin-g 95.9 0.0054 1.2E-07 53.3 2.6 23 34-56 1-23 (155)
345 COG1116 TauB ABC-type nitrate/ 95.9 0.0069 1.5E-07 56.7 3.3 28 28-55 25-52 (248)
346 PRK15455 PrkA family serine pr 95.9 0.006 1.3E-07 63.6 3.1 28 29-56 100-127 (644)
347 PF08477 Miro: Miro-like prote 95.9 0.0076 1.6E-07 48.4 3.2 22 35-56 2-23 (119)
348 PF01695 IstB_IS21: IstB-like 95.9 0.0087 1.9E-07 53.2 3.8 28 29-56 44-71 (178)
349 TIGR02525 plasmid_TraJ plasmid 95.8 0.0061 1.3E-07 60.4 3.1 26 31-56 148-173 (372)
350 COG1224 TIP49 DNA helicase TIP 95.8 0.0079 1.7E-07 59.1 3.7 27 31-57 64-90 (450)
351 PF10662 PduV-EutP: Ethanolami 95.8 0.0066 1.4E-07 52.4 2.9 22 33-54 2-23 (143)
352 PRK14964 DNA polymerase III su 95.8 0.056 1.2E-06 55.5 10.1 27 32-58 35-61 (491)
353 TIGR02639 ClpA ATP-dependent C 95.8 0.0085 1.8E-07 64.3 4.2 31 34-64 486-516 (731)
354 COG3172 NadR Predicted ATPase/ 95.8 0.0074 1.6E-07 53.2 3.1 28 32-59 8-35 (187)
355 TIGR02237 recomb_radB DNA repa 95.8 0.0092 2E-07 53.4 3.9 27 30-56 10-36 (209)
356 TIGR01243 CDC48 AAA family ATP 95.8 0.0087 1.9E-07 64.2 4.3 36 30-65 210-245 (733)
357 cd01124 KaiC KaiC is a circadi 95.8 0.0072 1.6E-07 52.7 2.9 22 34-55 1-22 (187)
358 TIGR00073 hypB hydrogenase acc 95.8 0.013 2.8E-07 52.8 4.7 28 30-57 20-47 (207)
359 COG1124 DppF ABC-type dipeptid 95.8 0.0076 1.7E-07 56.3 3.2 28 28-55 29-56 (252)
360 cd04163 Era Era subfamily. Er 95.8 0.0089 1.9E-07 49.6 3.3 24 32-55 3-26 (168)
361 PRK09183 transposase/IS protei 95.8 0.0087 1.9E-07 56.3 3.6 27 29-55 99-125 (259)
362 COG1222 RPT1 ATP-dependent 26S 95.8 0.01 2.2E-07 58.4 4.0 42 29-70 182-226 (406)
363 PRK13894 conjugal transfer ATP 95.7 0.0087 1.9E-07 58.1 3.5 26 31-56 147-172 (319)
364 PRK13764 ATPase; Provisional 95.7 0.0077 1.7E-07 63.1 3.3 28 30-57 255-282 (602)
365 PF03193 DUF258: Protein of un 95.7 0.0092 2E-07 52.5 3.3 25 32-56 35-59 (161)
366 COG1763 MobB Molybdopterin-gua 95.7 0.009 2E-07 52.5 3.2 26 32-57 2-27 (161)
367 TIGR02788 VirB11 P-type DNA tr 95.7 0.0085 1.8E-07 57.6 3.3 27 31-57 143-169 (308)
368 KOG2004 Mitochondrial ATP-depe 95.7 0.0091 2E-07 63.1 3.7 32 30-61 436-467 (906)
369 PF00931 NB-ARC: NB-ARC domain 95.7 0.0092 2E-07 55.6 3.5 26 30-55 17-42 (287)
370 TIGR01243 CDC48 AAA family ATP 95.7 0.011 2.3E-07 63.5 4.3 35 31-65 486-520 (733)
371 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.7 0.0089 1.9E-07 53.9 3.2 28 29-56 27-54 (218)
372 TIGR00763 lon ATP-dependent pr 95.7 0.01 2.2E-07 64.1 4.2 32 31-62 346-377 (775)
373 COG1120 FepC ABC-type cobalami 95.7 0.0091 2E-07 56.3 3.3 32 26-57 22-53 (258)
374 PRK14948 DNA polymerase III su 95.7 0.051 1.1E-06 57.4 9.2 28 32-59 38-65 (620)
375 COG0714 MoxR-like ATPases [Gen 95.7 0.011 2.4E-07 57.2 3.9 31 31-61 42-72 (329)
376 PRK14963 DNA polymerase III su 95.7 0.052 1.1E-06 56.0 9.1 28 31-58 35-62 (504)
377 cd01129 PulE-GspE PulE/GspE Th 95.7 0.01 2.2E-07 56.0 3.7 28 30-57 78-105 (264)
378 cd03225 ABC_cobalt_CbiO_domain 95.7 0.0094 2E-07 53.4 3.2 28 29-56 24-51 (211)
379 PRK06835 DNA replication prote 95.7 0.03 6.5E-07 54.6 7.0 26 31-56 182-207 (329)
380 TIGR03345 VI_ClpV1 type VI sec 95.6 0.032 6.9E-07 61.0 7.8 29 29-57 205-233 (852)
381 cd03292 ABC_FtsE_transporter F 95.6 0.0095 2.1E-07 53.5 3.2 28 29-56 24-51 (214)
382 COG4185 Uncharacterized protei 95.6 0.043 9.4E-07 48.5 7.1 37 31-67 1-39 (187)
383 TIGR01166 cbiO cobalt transpor 95.6 0.01 2.2E-07 52.5 3.2 28 29-56 15-42 (190)
384 cd03224 ABC_TM1139_LivF_branch 95.6 0.0098 2.1E-07 53.7 3.2 29 28-56 22-50 (222)
385 PF13476 AAA_23: AAA domain; P 95.6 0.0081 1.8E-07 52.3 2.6 30 31-60 18-47 (202)
386 PLN03025 replication factor C 95.6 0.01 2.2E-07 57.1 3.5 25 33-57 35-59 (319)
387 COG3839 MalK ABC-type sugar tr 95.6 0.009 1.9E-07 58.5 3.1 26 29-54 26-51 (338)
388 TIGR00960 3a0501s02 Type II (G 95.6 0.0099 2.2E-07 53.5 3.2 28 29-56 26-53 (216)
389 COG1493 HprK Serine kinase of 95.6 0.012 2.7E-07 56.3 3.9 35 35-70 148-182 (308)
390 PRK14723 flhF flagellar biosyn 95.6 0.012 2.5E-07 63.3 4.2 37 31-67 184-227 (767)
391 TIGR02315 ABC_phnC phosphonate 95.6 0.01 2.2E-07 54.4 3.3 28 29-56 25-52 (243)
392 KOG1970 Checkpoint RAD17-RFC c 95.6 0.011 2.5E-07 60.7 3.8 31 32-62 110-140 (634)
393 KOG0635 Adenosine 5'-phosphosu 95.6 0.078 1.7E-06 46.5 8.4 30 27-56 26-55 (207)
394 cd03258 ABC_MetN_methionine_tr 95.6 0.01 2.3E-07 54.0 3.3 30 27-56 26-55 (233)
395 TIGR02673 FtsE cell division A 95.6 0.011 2.3E-07 53.2 3.2 28 29-56 25-52 (214)
396 PRK05896 DNA polymerase III su 95.6 0.082 1.8E-06 55.6 10.1 28 31-58 37-64 (605)
397 cd03261 ABC_Org_Solvent_Resist 95.6 0.01 2.3E-07 54.2 3.2 28 29-56 23-50 (235)
398 cd03269 ABC_putative_ATPase Th 95.5 0.011 2.4E-07 53.0 3.3 28 29-56 23-50 (210)
399 cd03256 ABC_PhnC_transporter A 95.5 0.011 2.3E-07 54.1 3.3 28 29-56 24-51 (241)
400 cd03226 ABC_cobalt_CbiO_domain 95.5 0.011 2.3E-07 53.0 3.1 28 29-56 23-50 (205)
401 cd03116 MobB Molybdenum is an 95.5 0.011 2.4E-07 51.7 3.1 25 33-57 2-26 (159)
402 PRK09111 DNA polymerase III su 95.5 0.091 2E-06 55.3 10.4 29 31-59 45-73 (598)
403 TIGR00101 ureG urease accessor 95.5 0.013 2.9E-07 52.8 3.7 25 32-56 1-25 (199)
404 cd03262 ABC_HisP_GlnQ_permease 95.5 0.012 2.6E-07 52.8 3.3 28 29-56 23-50 (213)
405 PRK05707 DNA polymerase III su 95.5 0.068 1.5E-06 52.1 8.8 30 29-58 19-48 (328)
406 PF13086 AAA_11: AAA domain; P 95.5 0.0098 2.1E-07 52.8 2.7 23 34-56 19-41 (236)
407 cd03235 ABC_Metallic_Cations A 95.5 0.011 2.4E-07 53.2 3.0 28 29-56 22-49 (213)
408 TIGR03689 pup_AAA proteasome A 95.5 0.011 2.4E-07 60.9 3.3 30 30-59 214-243 (512)
409 PRK05428 HPr kinase/phosphoryl 95.5 0.0093 2E-07 57.6 2.6 38 32-70 146-183 (308)
410 cd03260 ABC_PstB_phosphate_tra 95.5 0.012 2.6E-07 53.4 3.3 28 29-56 23-50 (227)
411 cd03259 ABC_Carb_Solutes_like 95.4 0.012 2.7E-07 52.8 3.3 28 29-56 23-50 (213)
412 TIGR02211 LolD_lipo_ex lipopro 95.4 0.012 2.7E-07 53.1 3.2 28 29-56 28-55 (221)
413 TIGR00679 hpr-ser Hpr(Ser) kin 95.4 0.0091 2E-07 57.5 2.5 39 31-70 145-183 (304)
414 cd03263 ABC_subfamily_A The AB 95.4 0.012 2.7E-07 53.0 3.2 28 29-56 25-52 (220)
415 cd03230 ABC_DR_subfamily_A Thi 95.4 0.013 2.8E-07 51.2 3.2 30 27-56 21-50 (173)
416 cd03293 ABC_NrtD_SsuB_transpor 95.4 0.012 2.5E-07 53.3 3.0 28 29-56 27-54 (220)
417 PRK07940 DNA polymerase III su 95.4 0.09 2E-06 52.6 9.6 29 31-59 35-63 (394)
418 PRK14490 putative bifunctional 95.4 0.013 2.9E-07 57.7 3.6 28 30-57 3-30 (369)
419 cd03114 ArgK-like The function 95.4 0.053 1.1E-06 46.6 6.9 32 34-65 1-37 (148)
420 PRK11331 5-methylcytosine-spec 95.4 0.011 2.5E-07 59.8 3.2 29 31-59 193-221 (459)
421 PRK11629 lolD lipoprotein tran 95.4 0.013 2.7E-07 53.6 3.2 28 29-56 32-59 (233)
422 COG1660 Predicted P-loop-conta 95.4 0.16 3.5E-06 48.0 10.5 74 149-249 82-157 (286)
423 KOG2170 ATPase of the AAA+ sup 95.4 0.039 8.5E-07 53.2 6.5 77 28-126 106-182 (344)
424 TIGR03864 PQQ_ABC_ATP ABC tran 95.4 0.013 2.8E-07 53.6 3.3 28 29-56 24-51 (236)
425 cd00046 DEXDc DEAD-like helica 95.4 0.011 2.4E-07 47.2 2.5 24 34-57 2-25 (144)
426 cd03246 ABCC_Protease_Secretio 95.4 0.014 3.1E-07 50.9 3.3 28 29-56 25-52 (173)
427 COG1223 Predicted ATPase (AAA+ 95.4 0.014 3.1E-07 55.3 3.4 42 26-67 145-186 (368)
428 cd03238 ABC_UvrA The excision 95.4 0.021 4.6E-07 50.7 4.4 26 29-54 18-43 (176)
429 cd03301 ABC_MalK_N The N-termi 95.3 0.014 3E-07 52.4 3.3 28 29-56 23-50 (213)
430 PRK14493 putative bifunctional 95.3 0.012 2.7E-07 55.9 3.1 24 33-56 2-25 (274)
431 cd03219 ABC_Mj1267_LivG_branch 95.3 0.013 2.8E-07 53.4 3.1 28 29-56 23-50 (236)
432 TIGR03608 L_ocin_972_ABC putat 95.3 0.014 3E-07 52.1 3.1 28 29-56 21-48 (206)
433 PRK10584 putative ABC transpor 95.3 0.014 3E-07 53.0 3.2 28 29-56 33-60 (228)
434 PRK14247 phosphate ABC transpo 95.3 0.014 3.1E-07 53.8 3.3 28 29-56 26-53 (250)
435 cd03265 ABC_DrrA DrrA is the A 95.3 0.015 3.2E-07 52.6 3.3 28 29-56 23-50 (220)
436 cd03218 ABC_YhbG The ABC trans 95.3 0.015 3.2E-07 52.9 3.3 29 28-56 22-50 (232)
437 cd03296 ABC_CysA_sulfate_impor 95.3 0.014 3.1E-07 53.5 3.2 28 29-56 25-52 (239)
438 cd01123 Rad51_DMC1_radA Rad51_ 95.3 0.016 3.4E-07 52.7 3.5 26 30-55 17-42 (235)
439 TIGR01978 sufC FeS assembly AT 95.3 0.014 3.1E-07 53.3 3.3 28 28-55 22-49 (243)
440 cd03247 ABCC_cytochrome_bd The 95.3 0.015 3.2E-07 51.0 3.2 30 27-56 23-52 (178)
441 PF13481 AAA_25: AAA domain; P 95.3 0.018 3.9E-07 50.5 3.8 27 30-56 30-56 (193)
442 TIGR03346 chaperone_ClpB ATP-d 95.3 0.047 1E-06 59.7 7.7 27 30-56 192-218 (852)
443 cd03264 ABC_drug_resistance_li 95.3 0.013 2.9E-07 52.5 3.0 25 31-56 25-49 (211)
444 cd03229 ABC_Class3 This class 95.3 0.015 3.3E-07 51.0 3.3 30 27-56 21-50 (178)
445 TIGR02868 CydC thiol reductant 95.3 0.013 2.8E-07 60.1 3.2 28 29-56 358-385 (529)
446 PF01926 MMR_HSR1: 50S ribosom 95.3 0.015 3.2E-07 47.0 2.9 20 35-54 2-21 (116)
447 PRK14242 phosphate transporter 95.3 0.014 3.1E-07 53.9 3.2 27 29-55 29-55 (253)
448 cd03222 ABC_RNaseL_inhibitor T 95.3 0.016 3.5E-07 51.5 3.3 27 30-56 23-49 (177)
449 PRK13541 cytochrome c biogenes 95.3 0.015 3.3E-07 51.7 3.2 28 29-56 23-50 (195)
450 PRK10908 cell division protein 95.3 0.015 3.3E-07 52.6 3.3 28 29-56 25-52 (222)
451 cd03271 ABC_UvrA_II The excisi 95.3 0.014 3.1E-07 55.1 3.2 24 29-52 18-41 (261)
452 PRK12377 putative replication 95.3 0.013 2.8E-07 55.0 2.8 25 32-56 101-125 (248)
453 PRK14959 DNA polymerase III su 95.3 0.16 3.4E-06 53.7 11.1 28 32-59 38-65 (624)
454 PRK10247 putative ABC transpor 95.3 0.015 3.3E-07 52.9 3.3 28 28-55 29-56 (225)
455 cd03268 ABC_BcrA_bacitracin_re 95.3 0.015 3.3E-07 52.0 3.2 28 29-56 23-50 (208)
456 PRK00411 cdc6 cell division co 95.3 0.019 4.2E-07 56.3 4.2 28 29-56 52-79 (394)
457 PF12846 AAA_10: AAA-like doma 95.2 0.018 4E-07 53.3 3.8 37 33-69 2-41 (304)
458 PRK14250 phosphate ABC transpo 95.2 0.015 3.3E-07 53.5 3.2 28 29-56 26-53 (241)
459 PRK11264 putative amino-acid A 95.2 0.016 3.4E-07 53.4 3.3 28 29-56 26-53 (250)
460 cd03257 ABC_NikE_OppD_transpor 95.2 0.016 3.4E-07 52.5 3.2 29 28-56 27-55 (228)
461 PRK13341 recombination factor 95.2 0.018 3.8E-07 61.8 4.1 34 32-65 52-85 (725)
462 PRK09361 radB DNA repair and r 95.2 0.02 4.3E-07 52.0 3.9 26 30-55 21-46 (225)
463 cd03245 ABCC_bacteriocin_expor 95.2 0.016 3.4E-07 52.3 3.2 30 27-56 25-54 (220)
464 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.017 3.6E-07 54.3 3.5 26 30-55 34-59 (259)
465 cd00984 DnaB_C DnaB helicase C 95.2 0.019 4.1E-07 52.5 3.7 27 30-56 11-37 (242)
466 PF03266 NTPase_1: NTPase; In 95.2 0.014 3E-07 51.5 2.7 22 35-56 2-23 (168)
467 cd03273 ABC_SMC2_euk Eukaryoti 95.2 0.018 4E-07 53.3 3.7 28 31-58 24-51 (251)
468 TIGR01189 ccmA heme ABC export 95.2 0.017 3.6E-07 51.5 3.3 30 27-56 21-50 (198)
469 PRK11248 tauB taurine transpor 95.2 0.016 3.5E-07 54.0 3.3 28 29-56 24-51 (255)
470 COG1703 ArgK Putative periplas 95.2 0.089 1.9E-06 50.7 8.2 96 30-127 49-149 (323)
471 PF03976 PPK2: Polyphosphate k 95.2 0.022 4.7E-07 52.9 4.0 113 31-177 30-163 (228)
472 TIGR02012 tigrfam_recA protein 95.2 0.045 9.7E-07 53.3 6.4 36 30-65 53-91 (321)
473 CHL00206 ycf2 Ycf2; Provisiona 95.2 0.017 3.8E-07 66.8 4.0 39 29-67 1627-1665(2281)
474 PF06745 KaiC: KaiC; InterPro 95.2 0.017 3.8E-07 52.4 3.4 25 30-54 17-41 (226)
475 COG3842 PotA ABC-type spermidi 95.2 0.016 3.5E-07 57.0 3.3 26 29-54 28-53 (352)
476 TIGR03410 urea_trans_UrtE urea 95.2 0.017 3.6E-07 52.6 3.2 30 27-56 21-50 (230)
477 cd00983 recA RecA is a bacter 95.2 0.054 1.2E-06 52.8 6.9 36 30-65 53-91 (325)
478 cd03223 ABCD_peroxisomal_ALDP 95.2 0.018 3.9E-07 50.1 3.3 28 29-56 24-51 (166)
479 PRK11124 artP arginine transpo 95.2 0.017 3.7E-07 53.0 3.3 28 29-56 25-52 (242)
480 cd03297 ABC_ModC_molybdenum_tr 95.1 0.017 3.6E-07 52.1 3.1 27 29-56 21-47 (214)
481 PRK14237 phosphate transporter 95.1 0.022 4.8E-07 53.3 4.1 28 29-56 43-70 (267)
482 TIGR03707 PPK2_P_aer polyphosp 95.1 0.12 2.5E-06 48.1 8.7 112 30-175 29-161 (230)
483 PRK10744 pstB phosphate transp 95.1 0.017 3.7E-07 53.8 3.2 28 29-56 36-63 (260)
484 TIGR01184 ntrCD nitrate transp 95.1 0.017 3.8E-07 52.8 3.2 28 29-56 8-35 (230)
485 COG4608 AppF ABC-type oligopep 95.1 0.022 4.7E-07 54.0 3.9 36 26-61 33-71 (268)
486 PRK15177 Vi polysaccharide exp 95.1 0.018 3.9E-07 52.2 3.2 28 29-56 10-37 (213)
487 PRK10646 ADP-binding protein; 95.1 0.025 5.4E-07 49.3 4.0 29 30-58 26-54 (153)
488 cd03232 ABC_PDR_domain2 The pl 95.1 0.017 3.7E-07 51.4 3.0 26 29-54 30-55 (192)
489 cd03252 ABCC_Hemolysin The ABC 95.1 0.018 3.8E-07 52.7 3.2 28 29-56 25-52 (237)
490 COG1122 CbiO ABC-type cobalt t 95.1 0.017 3.6E-07 53.8 3.0 28 28-55 26-53 (235)
491 PRK14262 phosphate ABC transpo 95.1 0.018 3.9E-07 53.1 3.3 29 27-55 24-52 (250)
492 PRK10536 hypothetical protein; 95.1 0.02 4.2E-07 54.2 3.5 24 32-55 74-97 (262)
493 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.1 0.018 3.9E-07 52.7 3.2 30 27-56 24-53 (238)
494 PRK09493 glnQ glutamine ABC tr 95.1 0.018 4E-07 52.7 3.3 28 29-56 24-51 (240)
495 PF05673 DUF815: Protein of un 95.1 0.14 3E-06 48.1 9.0 38 30-67 50-90 (249)
496 PRK13539 cytochrome c biogenes 95.1 0.019 4.1E-07 51.6 3.2 30 27-56 23-52 (207)
497 COG0593 DnaA ATPase involved i 95.1 0.3 6.5E-06 49.1 12.0 39 31-69 112-155 (408)
498 COG2804 PulE Type II secretory 95.1 0.017 3.6E-07 59.0 3.1 31 28-58 254-284 (500)
499 cd03228 ABCC_MRP_Like The MRP 95.1 0.02 4.3E-07 49.9 3.3 30 27-56 23-52 (171)
500 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.019 4E-07 49.0 3.0 29 28-56 22-50 (144)
No 1
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=3.4e-71 Score=552.37 Aligned_cols=272 Identities=50% Similarity=0.836 Sum_probs=242.1
Q ss_pred cccccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHH
Q 020362 25 EHFFRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTAT 104 (327)
Q Consensus 25 ~~~~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~ 104 (327)
+..+..++++|+|+||||||||+||..||++++++|||+|+||+|+||||+||||+.+|+.||||||+|+++|+++|+++
T Consensus 15 ~~~~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~ 94 (468)
T PLN02748 15 SPKQKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAK 94 (468)
T ss_pred CcccCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCch------------------------h----------------
Q 020362 105 DFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAA------------------------E---------------- 144 (327)
Q Consensus 105 ~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~------------------------~---------------- 144 (327)
+|.++|..+|++|+++|++|||||||++|+++|+.|... .
T Consensus 95 ~F~~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~l~~~L~ 174 (468)
T PLN02748 95 DFRDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYELLK 174 (468)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999975310 0
Q ss_pred -----------------------------------h------------hcccceEEEEEeCCHHHHHHHhhhhhhhhhhc
Q 020362 145 -----------------------------------F------------QLRYECFFLWVDVSLPVLHSFVSERVDRMVEL 177 (327)
Q Consensus 145 -----------------------------------~------------~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~ 177 (327)
+ ..+|++++|||++++++|++||++||+.|+++
T Consensus 175 ~vDP~~A~rihpnD~rRI~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~ 254 (468)
T PLN02748 175 ELDPVAANRIHPNNHRKINRYLELYATTGVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCMIDA 254 (468)
T ss_pred hhCHHHHhhcCCccHHHHHHHHHHHHHHCcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHC
Confidence 0 01367789999999999999999999999999
Q ss_pred cHHHHHHhhhcCCCCCcchhhhhccHHHHHHHHH--------cCCC-------------------ccHHHHHHHHHHHHH
Q 020362 178 GLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIR--------AGSL-------------------LDHKIRAKLLEAAIN 230 (327)
Q Consensus 178 Gl~~Ev~~l~~~~~~~~~g~~qaIGykE~~~yl~--------~~~~-------------------~d~~~~~~ll~~aie 230 (327)
||++||+.|++.+.+++.|++|+||||||.+||+ |+.+ .+++....++++|++
T Consensus 255 GlleEv~~l~~~~~~~~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eaie 334 (468)
T PLN02748 255 GLLDEVYDIYDPGADYTRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMKENSRKILNFPHDDKLKILLDEAID 334 (468)
T ss_pred CHHHHHHHHHhcCCCCCcccceeEcHHHHHHHHHhcccccccccccccccccchhhhhhhccccccchhhhhhhHHHHHH
Confidence 9999999999876667889999999999999998 3320 123444568999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCcceEEeeCchhhhhchhhHHHHHHHhhhchHHHHHHHHhcCCCc
Q 020362 231 KIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFLKRGEEADEAWEKLVMLPSTMTVRQFLYDEDR 299 (327)
Q Consensus 231 ~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD~t~~~~~~~~~~~~~w~~~V~~pa~~iv~~fl~~~~~ 299 (327)
.||.+||||||||+|||+++....+|+++|+|+|++|+ ...++.|++.|.+||++||++||++..+
T Consensus 335 ~ik~~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~~~~---~~~~~~W~~~V~~pa~~iv~~fL~~~~~ 400 (468)
T PLN02748 335 QVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATEAIL---CKSEESWNAKVVKPAVEIVRRFLSDDTS 400 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCeeEeechhhhh---hccHhHHHHHhHHHHHHHHHHHHcCCCC
Confidence 99999999999999999997665679999999999875 2335899999999999999999998763
No 2
>PLN02165 adenylate isopentenyltransferase
Probab=100.00 E-value=6.7e-68 Score=507.93 Aligned_cols=269 Identities=51% Similarity=0.879 Sum_probs=235.4
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCc-ccCHHHH
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA-NFTATDF 106 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~-~~s~~~f 106 (327)
++.+.++|+|+||||||||+||..||+.++++|||+|++|+|+|+||+|+||+.+|+.|++||++|++++.+ .|++.+|
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F 118 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEF 118 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHH
Confidence 566778999999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCc-hhh------------hcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 107 RNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDA-AEF------------QLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 107 ~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~-~~~------------~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
.+.+...++++.++|++||+||||++|+++|+.|.. ++. ..+|+++++||++++++|++||++|++.
T Consensus 119 ~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd~ 198 (334)
T PLN02165 119 RSLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVDE 198 (334)
T ss_pred HHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999741 111 1357888999999999999999999999
Q ss_pred hhhccHHHHHHhhhcCCCCC--cchhhhhccHHHHHHHHHcCCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020362 174 MVELGLVEEVKQMFDPQADY--SRGIRRAIGVPELDQYIRAGSLLD-----HKIRAKLLEAAINKIKENTCNLSCRQLQK 246 (327)
Q Consensus 174 Ml~~Gl~~Ev~~l~~~~~~~--~~g~~qaIGykE~~~yl~~~~~~d-----~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW 246 (327)
|+++||++||+.|++.+.+. +.+++|+||||||.+||++....+ +...+..+++|++.++.+||||||||+||
T Consensus 199 Ml~~GlldEv~~L~~~~~~~~~~~~~~qaIGYkE~~~yL~~~~~~~~~g~~~~~~~~~l~e~ie~ik~~TrqYAKRQ~TW 278 (334)
T PLN02165 199 MMDSGMFEELAEFYDPVKSGSEPLGIRKAIGVPEFDRYFKKYPPENKMGKWDQARKAAYEEAVREIKENTCQLAKRQIEK 278 (334)
T ss_pred HHHCCHHHHHHHHHHccCCcccCCCceeEEcHHHHHHHHHhccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999864333 458999999999999998321100 11234568999999999999999999999
Q ss_pred HhhhcCCCCcceEEeeCchhhhh----ch--hhHHHHHHHhhhchHHHHHHHHhcCC
Q 020362 247 IHRLNDVWNWNIHRIDATEVFLK----RG--EEADEAWEKLVMLPSTMTVRQFLYDE 297 (327)
Q Consensus 247 ~r~~~~~~~~~i~~lD~t~~~~~----~~--~~~~~~w~~~V~~pa~~iv~~fl~~~ 297 (327)
||++.. ..|+++|||+|+++.. .+ ....+.|++.|.+||++|+++||+++
T Consensus 279 fR~~~~-~~~~~~~lD~t~~~~~~~~~~~~~~~~~~~w~~~v~~~~~~i~~~fl~~~ 334 (334)
T PLN02165 279 IMKLKS-AGWDIKRVDATASFRAVMRKKGKKKKWREIWEKDVLEPSVKIVKRFLVED 334 (334)
T ss_pred hcCCcc-cCCcEEEEechhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHhcCC
Confidence 999865 3689999999998652 12 34568999999999999999999874
No 3
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=1.1e-65 Score=488.45 Aligned_cols=220 Identities=27% Similarity=0.437 Sum_probs=200.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
..+++|+|+||||||||.||.+||++ ++||||+||||+||||||+|||||.+|+.+|||||+|+++|+++||+++|.++
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~ 80 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE 80 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence 45679999999999999999999999 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCch----------------------------------------------
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAA---------------------------------------------- 143 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~---------------------------------------------- 143 (327)
|.++|++++++|++||||||||+|+++|++|++.
T Consensus 81 a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~R 160 (300)
T PRK14729 81 ALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYR 160 (300)
T ss_pred HHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHH
Confidence 9999999999999999999999999999988620
Q ss_pred ----------------hhh----cccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcCCCCCcchhhhhccH
Q 020362 144 ----------------EFQ----LRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGV 203 (327)
Q Consensus 144 ----------------~~~----~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~~~~~~g~~qaIGy 203 (327)
++. ..+++++++|++|+++|++||++|++.|+++||++||+.|++.+.+.+.+++|+|||
T Consensus 161 i~RALEv~~~tG~~~s~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~GlieEv~~l~~~~~~~~~~~~~aIGY 240 (300)
T PRK14729 161 IKRSLEVYYQTGIPISQFLKKQNMFKNILAIGLKRPMEEMKSRIISRVNNMIDCGLLSEIKSLLGKGYNENTPAFKGIGY 240 (300)
T ss_pred HHHHHHHHHHhCCChHhhhhccCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCCCCCCCcceeEcH
Confidence 000 024677899999999999999999999999999999999998655557789999999
Q ss_pred HHHHHHH-HcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceEEeeCc
Q 020362 204 PELDQYI-RAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDAT 264 (327)
Q Consensus 204 kE~~~yl-~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD~t 264 (327)
||+.+|| .|+.+ +++|++.++++||||||||+||||++.. ++|+|.+
T Consensus 241 kE~~~yl~~g~~~---------l~e~~e~i~~~Tr~yAKRQ~TWfr~~~~-----~~w~~~~ 288 (300)
T PRK14729 241 REFLLWKSRPCYM---------LNDIINLIVKNSFLYVKRQMTFFAKIPN-----VLWFHPD 288 (300)
T ss_pred HHHHHHHhcCCCC---------HHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CeeecCC
Confidence 9999999 67766 7999999999999999999999998754 6888864
No 4
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-65 Score=480.21 Aligned_cols=269 Identities=55% Similarity=0.861 Sum_probs=239.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
+.++|+|+|+||||||.||++||.+|++||||+|+||+|+|+||+|||++.+|+.||||||+++++|+.+||+++|+++|
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHHHHcCC-ch---hh---------hcccceEEEEEeCCHHHHHHHhhhhhhhhhhc
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKALVNGD-AA---EF---------QLRYECFFLWVDVSLPVLHSFVSERVDRMVEL 177 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~-~~---~~---------~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~ 177 (327)
..+|++|+++|++|||+|||++|+++|+.+. ++ .+ ..+|++||+|++++..+|.+|+.+|||.||+.
T Consensus 86 ~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~Ml~~ 165 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDDMLES 165 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999762 00 01 23699999999999999999999999999999
Q ss_pred cHHHHHHhhhcC-CCCCcchhhhhccHHHHHHHHHcCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020362 178 GLVEEVKQMFDP-QADYSRGIRRAIGVPELDQYIRAGSL---LDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDV 253 (327)
Q Consensus 178 Gl~~Ev~~l~~~-~~~~~~g~~qaIGykE~~~yl~~~~~---~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~ 253 (327)
||+||+++||+. ..++..++.++||++||+.|++-... ..+..+..++++|++.||.+|+||||||.+||.++...
T Consensus 166 Gl~eE~~~f~~~~~s~~~~~i~~~iGv~e~d~f~~~~~~~~~k~d~~~~~~l~~aie~iK~nT~~lakrQ~~~I~~l~~~ 245 (348)
T KOG1384|consen 166 GLLEELRDFYDPYNSSYRSGIRKAIGVPEFDGFKEFYPWLTDKWDLARKELLEKAIEAIKENTRRLAKRQKRKIEKLFLP 245 (348)
T ss_pred chHHHHHHHhhhhhcCccccchhccCcHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999986 45666778888888888888875431 22456667899999999999999999999999998766
Q ss_pred CCcceEEeeCchhhhh---chh----hHHHHHHHhhhchHHHHHHHHhcCCCc
Q 020362 254 WNWNIHRIDATEVFLK---RGE----EADEAWEKLVMLPSTMTVRQFLYDEDR 299 (327)
Q Consensus 254 ~~~~i~~lD~t~~~~~---~~~----~~~~~w~~~V~~pa~~iv~~fl~~~~~ 299 (327)
+.|+++++|+|++|.. +.. .....|+..|..|+.+|+++||.....
T Consensus 246 ~~~~i~~vdaT~~~~~~~~~~s~~~~~~~~~w~~~v~~ps~~iv~~~l~~~~~ 298 (348)
T KOG1384|consen 246 RKWDIHRVDATEVFLFAKNRSSWFRIEQREIWNNPVKPPSAKIVKRFLDYYES 298 (348)
T ss_pred CCccccccchHHHHHHhhhhhHHhhhccchhhccccccchHHHHHHHHHhhhh
Confidence 5599999999999874 222 347899999999999999999975433
No 5
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-64 Score=475.25 Aligned_cols=221 Identities=39% Similarity=0.619 Sum_probs=204.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
++++|+|+||||||||.||+.||+++|+||||+||||||+||||||+||+.+|+.++|||++|+++|.+.||+.+|.++|
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a 81 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA 81 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCc---------------------------------h--------------
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKALVNGDA---------------------------------A-------------- 143 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~---------------------------------~-------------- 143 (327)
...|++|.++||+|||||||++|+++|++|.+ +
T Consensus 82 ~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~Ri 161 (308)
T COG0324 82 LAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQRI 161 (308)
T ss_pred HHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999862 0
Q ss_pred ---------------hh-------hcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcCCCCCcchhhhhc
Q 020362 144 ---------------EF-------QLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAI 201 (327)
Q Consensus 144 ---------------~~-------~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~~~~~~g~~qaI 201 (327)
++ ...|++.+++|.++++.|++||+.|++.|+++||++||+.|+..+.......+|+|
T Consensus 162 ~RALEv~~~tGk~~s~~~~~~~~~~~~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~Gli~EV~~L~~~g~~~~~~~~~~i 241 (308)
T COG0324 162 IRALEVYYLTGKPISELQKRSRPILEPYDILIIALAADREVLYERINRRVDAMLEQGLIEEVKALYARGLHLDLPAMQAI 241 (308)
T ss_pred HHHHHHHHHHCCCHHHHhhcccCCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCccchHHHhc
Confidence 00 01467889999999999999999999999999999999999987655566799999
Q ss_pred cHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceEEeeCch
Q 020362 202 GVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATE 265 (327)
Q Consensus 202 GykE~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD~t~ 265 (327)
||+|+.+||+|+.+ ++++++.++.+||||||||+||||++.. ++|+|...
T Consensus 242 Gy~e~~~yl~g~~~---------~~ea~~~~~~~TRqyAKRQ~TWfr~~~~-----~~w~~~~~ 291 (308)
T COG0324 242 GYKEILAYLDGGIS---------LEEAIERIKTATRQYAKRQLTWFRNQLG-----VHWLDSES 291 (308)
T ss_pred CHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHHHHHHhccCcc-----cceeccCC
Confidence 99999999999877 8999999999999999999999998765 67887653
No 6
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=4.6e-62 Score=461.31 Aligned_cols=218 Identities=39% Similarity=0.616 Sum_probs=201.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
+|+|+||||||||+||..||+.++++|||+||||+|++|||+|+||+.+|+.|+||||+|+++|.+.|++++|.+.+...
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~ 80 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA 80 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEcCchHHHHHHHcCCc---------------------------------h-----------------
Q 020362 114 IESILSRDRLPIIAGGSSSYIKALVNGDA---------------------------------A----------------- 143 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~~all~~~~---------------------------------~----------------- 143 (327)
|++++++|++|||||||++|+++|+.|.. +
T Consensus 81 i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RA 160 (287)
T TIGR00174 81 IADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRA 160 (287)
T ss_pred HHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHhcCCccHHHHHHH
Confidence 99999999999999999999999998852 0
Q ss_pred ------------hhh------cccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcCCCCCcchhhhhccHHH
Q 020362 144 ------------EFQ------LRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPE 205 (327)
Q Consensus 144 ------------~~~------~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~~~~~~g~~qaIGykE 205 (327)
++. ..|++++|||++|+++|++||++|++.|+++||++||+.|++.+.+.+.+++|+|||||
T Consensus 161 LEi~~~tG~~~s~~~~~~~~~~~~~~~~i~l~~dr~~L~~rI~~Rv~~Mi~~Gl~eEv~~l~~~~~~~~~~~~~aIGYkE 240 (287)
T TIGR00174 161 LEVFYATGKPPSELFKEQKIELFYDAVQIGLASSREPLHQRIEQRVHDMLESGLLAEVKALYAQYDLCDLPSIQAIGYKE 240 (287)
T ss_pred HHHHHHHCCChHHHhhccCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCCcCCchhhhccHHH
Confidence 000 13677889999999999999999999999999999999999865555678999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceEEeeCch
Q 020362 206 LDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATE 265 (327)
Q Consensus 206 ~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD~t~ 265 (327)
|++||+|+.+ ++++++.++.+||||||||+||||+..+ ++|+|+++
T Consensus 241 ~~~~l~g~~~---------~~e~ie~i~~~Tr~yAKRQ~TWfR~~~~-----~~~~~~~~ 286 (287)
T TIGR00174 241 FLLYLEGTVS---------LEDAIERIKCNTRQYAKRQLTWFRKWSD-----VLWLDSTD 286 (287)
T ss_pred HHHHHcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CEEeCCCC
Confidence 9999999987 7999999999999999999999999754 78999764
No 7
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=7.7e-60 Score=450.73 Aligned_cols=219 Identities=43% Similarity=0.648 Sum_probs=201.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
.++++|+|+||||||||+||..||+.++++|||+|++|+|+++||+|+||+.+|+.|++|||+|+++|.+.|++++|.++
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~ 81 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD 81 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCc---------------------------------h-------------
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDA---------------------------------A------------- 143 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~---------------------------------~------------- 143 (327)
|.+.+++++++|++|||||||++|+++++.|.. +
T Consensus 82 a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~R 161 (307)
T PRK00091 82 ALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARIHPNDPQR 161 (307)
T ss_pred HHHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCch
Confidence 999999999999999999999999999987641 0
Q ss_pred ----------------hhh-----cccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcCCCCCcchhhhhcc
Q 020362 144 ----------------EFQ-----LRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIG 202 (327)
Q Consensus 144 ----------------~~~-----~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~~~~~~g~~qaIG 202 (327)
++. ..|++++|||++|+++|++||++|++.|+++||++||+.|++.+.+.+.+++|+||
T Consensus 162 i~RAlEi~~~tG~~~s~~~~~~~~~~~~~~~~~l~~dr~~L~~rI~~Rv~~Ml~~Gl~eEv~~l~~~~~~~~~~~~~aIG 241 (307)
T PRK00091 162 IIRALEVYELTGKPLSELQKRGKPPPYRVLIIGLDPDREELYERINQRVDQMLEQGLLEEVRALLARGYLPDLPAMRAIG 241 (307)
T ss_pred hHHHHHHHHHHCCChhhhhhccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHcCCCCCCccceeec
Confidence 010 23678899999999999999999999999999999999999865555678999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceEEee
Q 020362 203 VPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRID 262 (327)
Q Consensus 203 ykE~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD 262 (327)
|||+.+||+|+.+ +++|++.++.+||||||||+||||++.+ ++|+|
T Consensus 242 ykE~~~yl~g~~s---------~~e~~e~i~~~Tr~yAKRQ~TWfr~~~~-----~~w~~ 287 (307)
T PRK00091 242 YKELLAYLDGEIS---------LEEAIEKIKQATRQYAKRQLTWFRRQPD-----IHWLD 287 (307)
T ss_pred HHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCCC-----Ceeec
Confidence 9999999999988 7999999999999999999999999753 78888
No 8
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=8e-59 Score=457.07 Aligned_cols=226 Identities=31% Similarity=0.528 Sum_probs=199.6
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
..+.++|+|+||||||||+||..||++++++|||+|++|+|++|||+|+||+.+|+.+|||||+|+++|.++||+++|.+
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~ 97 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFD 97 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHH
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCc------h---------------------------------------
Q 020362 109 HASLAIESILSRDRLPIIAGGSSSYIKALVNGDA------A--------------------------------------- 143 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~------~--------------------------------------- 143 (327)
+|.++|++++++|++||||||||+|+++|++|.. +
T Consensus 98 ~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP~A~~i~p 177 (421)
T PLN02840 98 DARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDPKARSLPR 177 (421)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCcHHHhcCC
Confidence 9999999999999999999999999999998751 0
Q ss_pred ---------------------hhh----------------------------cccceEEEEEeCCHHHHHHHhhhhhhhh
Q 020362 144 ---------------------EFQ----------------------------LRYECFFLWVDVSLPVLHSFVSERVDRM 174 (327)
Q Consensus 144 ---------------------~~~----------------------------~~~~~~~i~L~~~~e~L~~RL~~Rv~~M 174 (327)
++. ..|++++|+|++|+++|++||++|++.|
T Consensus 178 nD~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~L~~dR~~Ly~RI~~Rvd~M 257 (421)
T PLN02840 178 NDWYRLRRSLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLRCEEM 257 (421)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHhhccccchhhccccccccccccccccccCCCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 010 0245678899999999999999999999
Q ss_pred hh--ccHHHHHHhhhcCCCCCc-chhhhhccHHHHHHHHH------cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020362 175 VE--LGLVEEVKQMFDPQADYS-RGIRRAIGVPELDQYIR------AGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQ 245 (327)
Q Consensus 175 l~--~Gl~~Ev~~l~~~~~~~~-~g~~qaIGykE~~~yl~------~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~t 245 (327)
++ +||++||+.|++.+.... .+++|+|||||+++||. |+.+. +.+.++++.++++||||||||+|
T Consensus 258 l~~~~GLleEV~~Ll~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~G~~s~------ee~~~~~e~i~~~TRqYAKRQ~T 331 (421)
T PLN02840 258 LAGTNGILSEASWLLDLGLLPNSNSATRAIGYRQAMEYLLQCRQNGGESSP------QEFLAFLSKFQTASRNFAKRQMT 331 (421)
T ss_pred HHcccCHHHHHHHHHHcCCCccccchHHHhcHHHHHHHHHhhcccCCCCCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999998643333 47999999999999999 77761 11234669999999999999999
Q ss_pred HHhhhcCCCCcceEEeeCch
Q 020362 246 KIHRLNDVWNWNIHRIDATE 265 (327)
Q Consensus 246 W~r~~~~~~~~~i~~lD~t~ 265 (327)
|||++.. ++|+|.+.
T Consensus 332 WFR~~~~-----~~w~~~~~ 346 (421)
T PLN02840 332 WFRNEPI-----YHWLDASQ 346 (421)
T ss_pred HhCCCCC-----CeEecCCC
Confidence 9999754 78999753
No 9
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=6.6e-53 Score=393.40 Aligned_cols=184 Identities=40% Similarity=0.612 Sum_probs=159.2
Q ss_pred cchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCc---
Q 020362 66 MQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDA--- 142 (327)
Q Consensus 66 ~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~--- 142 (327)
||+||||||||||||.+|+.+|||||+|+++|++.||+++|.++|.++|++|+++|++||||||||+|+++|+.|..
T Consensus 1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~p 80 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADIP 80 (253)
T ss_dssp STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--TS
T ss_pred CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998862
Q ss_pred ------------------------------hh-----------------------------------hhcccceEEEEEe
Q 020362 143 ------------------------------AE-----------------------------------FQLRYECFFLWVD 157 (327)
Q Consensus 143 ------------------------------~~-----------------------------------~~~~~~~~~i~L~ 157 (327)
++ ....+++++|||+
T Consensus 81 ~~~~~~r~~~~~~~~~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~~~~~~~~~~~~i~L~ 160 (253)
T PF01715_consen 81 EVDPELRAELRAELEEEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALEIYELTGKPPSEWQKKQKPPPRYDFLVIGLD 160 (253)
T ss_dssp SSHHHHHHHHHHHHHHSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHCHHHCBSSEEEEEEEE
T ss_pred cccHHHHHHHHHHHHhccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChhHhhhcccccccCCeEEEEeC
Confidence 00 0124688999999
Q ss_pred CCHHHHHHHhhhhhhhhhhccHHHHHHhhhcCCCCCcchhhhhccHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHH
Q 020362 158 VSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTC 237 (327)
Q Consensus 158 ~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~~~~~~g~~qaIGykE~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr 237 (327)
+++++|++||++|++.|+++||++||+.|++.+.+.+.+++|+||||||.+||+|+.+ ++++++.++.+||
T Consensus 161 ~~r~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~aIGYkE~~~~l~g~~~---------~~e~~e~i~~~Tr 231 (253)
T PF01715_consen 161 RDREELYERINKRVDEMLEQGLLEEVRALLERGLPPDLPAMQAIGYKEFIDYLEGEIS---------LEEAIERIKTNTR 231 (253)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTGGTTSCGGGSTTHHHHHHHHTTSSC---------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhceeeehHHHHHhhcCCCC---------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865667889999999999999999988 7999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcceEEeeC
Q 020362 238 NLSCRQLQKIHRLNDVWNWNIHRIDA 263 (327)
Q Consensus 238 ~yAkRQ~tW~r~~~~~~~~~i~~lD~ 263 (327)
||||||+||||++.. ++|+|.
T Consensus 232 qyAKRQ~TWfr~~~~-----~~w~d~ 252 (253)
T PF01715_consen 232 QYAKRQRTWFRNQPN-----IHWIDI 252 (253)
T ss_dssp HHHHHHHHHHHTTSS-----EEEEET
T ss_pred HHHHHHHHHhCCCCC-----CeeeeC
Confidence 999999999999875 899986
No 10
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=99.96 E-value=1.2e-28 Score=222.36 Aligned_cols=214 Identities=24% Similarity=0.311 Sum_probs=155.8
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCc-ccCHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA-NFTATDFRNHAS 111 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~-~~s~~~f~~~a~ 111 (327)
++++|+||||||||.+|+.||+++|++||+.|++|+|.+++++|+||+++|..|++++++|.....+ .+++.++.+...
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li 81 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLI 81 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999998776555 789999988888
Q ss_pred HHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeC-CHHHHHHHhhhhhhhhhhc-----cHHHHHHh
Q 020362 112 LAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDV-SLPVLHSFVSERVDRMVEL-----GLVEEVKQ 185 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~-~~e~L~~RL~~Rv~~Ml~~-----Gl~~Ev~~ 185 (327)
..+.++.+ ++.+|+.|||-+.++.+.... .+...|...+..+.. +++....|..+|+.+|+.- ++++|+..
T Consensus 82 ~~v~~~~~-~~~~IlEGGSISLl~~m~~~~--~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~Sll~EL~~ 158 (233)
T PF01745_consen 82 SEVNSYSA-HGGLILEGGSISLLNCMAQDP--YWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGPSLLEELVA 158 (233)
T ss_dssp HHHHTTTT-SSEEEEEE--HHHHHHHHH-T--TTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS--HHHHHHH
T ss_pred HHHHhccc-cCceEEeCchHHHHHHHHhcc--cccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Confidence 88888766 778899999999998887653 233556666666654 5678889999999999974 69999999
Q ss_pred hhcCCCCCcchhhhhc-cHHHHHHHHHcCC-Ccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020362 186 MFDPQADYSRGIRRAI-GVPELDQYIRAGS-LLD--HKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLN 251 (327)
Q Consensus 186 l~~~~~~~~~g~~qaI-GykE~~~yl~~~~-~~d--~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~ 251 (327)
+++. +-.+.+...| ||+-++.|.+... +.| ......++++.++.|......||..|.+=|-..+
T Consensus 159 lW~~--p~~r~~ledIdGyr~~i~~a~~~~v~~~~l~~~~~~~~~~Li~~ia~eY~~ha~~QEq~F~~~~ 226 (233)
T PF01745_consen 159 LWND--PALRPILEDIDGYRYIIRFARKHQVTPDQLLSIDLDMLQELIEGIAEEYLEHAQWQEQEFPQVP 226 (233)
T ss_dssp HHTS--TTHHHHHTTSTTHHHHHHHHHHTT--GGGCCG-THHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred HHhC--ccccchHhhhccHHHHHHHHHHhCCCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 9986 4456677888 9999999998542 111 1122366899999999999999999999776543
No 11
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.44 E-value=2.2e-13 Score=120.09 Aligned_cols=141 Identities=18% Similarity=0.327 Sum_probs=99.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc-CcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
.+.|+++|++|+||||++..||+.++..++.+|..-.-+ |++|. +..+.+....|++..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~--------------------eIF~~~GE~~FR~~E 61 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIA--------------------EIFEEEGEEGFRRLE 61 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHH--------------------HHHHHHhHHHHHHHH
Confidence 356899999999999999999999999999999764322 33321 223346778899999
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHH----HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh-hhhhhccHH-HHHH
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYI----KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV-DRMVELGLV-EEVK 184 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~----~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv-~~Ml~~Gl~-~Ev~ 184 (327)
.+.+.++...+...|-.|| |.++ ..++. -...+|||++|.++|++|+...- ...+..+-. ++++
T Consensus 62 ~~vl~~l~~~~~~ViaTGG-G~v~~~enr~~l~---------~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~ 131 (172)
T COG0703 62 TEVLKELLEEDNAVIATGG-GAVLSEENRNLLK---------KRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELE 131 (172)
T ss_pred HHHHHHHhhcCCeEEECCC-ccccCHHHHHHHH---------hCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHH
Confidence 9999999988766566676 4332 11111 13479999999999999998443 444444444 6799
Q ss_pred hhhcCCCCCcchhhhhccHHHHHHHHH
Q 020362 185 QMFDPQADYSRGIRRAIGVPELDQYIR 211 (327)
Q Consensus 185 ~l~~~~~~~~~g~~qaIGykE~~~yl~ 211 (327)
+|++.+.+ =|+|..+|.-
T Consensus 132 ~L~~~R~~---------~Y~e~a~~~~ 149 (172)
T COG0703 132 ELLEERQP---------LYREVADFII 149 (172)
T ss_pred HHHHHHHH---------HHHHhCcEEe
Confidence 99986322 3777766643
No 12
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2.7e-12 Score=110.17 Aligned_cols=127 Identities=19% Similarity=0.316 Sum_probs=97.8
Q ss_pred EcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHHHHHH
Q 020362 38 MGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLAIESI 117 (327)
Q Consensus 38 ~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~i~~i 117 (327)
+|.+||||||++..||+++|+++|..|.+|.-.+++.++ .|+|- -| -+..-|.+.....+...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~--------~GiPL--~D-------dDR~pWL~~l~~~~~~~ 63 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMS--------AGIPL--ND-------DDRWPWLEALGDAAASL 63 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHh--------CCCCC--Cc-------chhhHHHHHHHHHHHHh
Confidence 699999999999999999999999999999877777665 35552 11 12344666666666666
Q ss_pred HhCCCCeEEEcCch---HHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcC
Q 020362 118 LSRDRLPIIAGGSS---SYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDP 189 (327)
Q Consensus 118 ~~~gk~pIvvGGT~---~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~ 189 (327)
.+.++. +|+.+|. .|++-|..+. -...|+||+.+.+++.+|+..|-+++|...|++..-+.++.
T Consensus 64 ~~~~~~-~vi~CSALKr~YRD~LR~~~-------~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~ 130 (161)
T COG3265 64 AQKNKH-VVIACSALKRSYRDLLREAN-------PGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEE 130 (161)
T ss_pred hcCCCc-eEEecHHHHHHHHHHHhccC-------CCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcC
Confidence 666775 5555666 4766554432 14789999999999999999999999999999988877764
No 13
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.37 E-value=6.2e-12 Score=120.08 Aligned_cols=130 Identities=16% Similarity=0.242 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe-EEeCCccc------------------hhcCcccccCCCChhhhcCccce
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE-IINSDKMQ------------------VYKGLDIVTNKVTEEECHGVPHH 90 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e-iIs~Ds~q------------------vy~gldI~Takp~~~E~~gvphh 90 (327)
..|.+|+|.|+|||||||+|..||+++|.. +|++|+++ .|..+.+.+++|+.++ ||
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~~ 164 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----PV 164 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----hh
Confidence 356799999999999999999999999987 89999999 8999999999988654 78
Q ss_pred eccccCCCcccCHHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEe-CCHHHHHHHhhh
Q 020362 91 LLGIIEPNANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVD-VSLPVLHSFVSE 169 (327)
Q Consensus 91 lid~~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~-~~~e~L~~RL~~ 169 (327)
+.++.++.+.+++ .....|+....+|.. +|+.|.++....+-+ . ....-+.+.++|. .+.+...+|...
T Consensus 165 l~g~~~~~~~v~~-----gi~~~I~~~~~~g~s-~IiEGvhl~P~~i~~-~---~~~~~~~i~~~l~i~~ee~h~~RF~~ 234 (301)
T PRK04220 165 IYGFERHVEPVSV-----GVEAVIERALKEGIS-VIIEGVHIVPGFIKE-K---YLENPNVFMFVLTLSDEEAHKARFYA 234 (301)
T ss_pred hhhHHHHHHHHHH-----HHHHHHHHHHHhCCc-EEEecCCCCHHHHHH-h---hhcCCCEEEEEEEECCHHHHHHHHHH
Confidence 8888876543333 356677777777755 666666653322111 0 1112234566666 566889999999
Q ss_pred hhhhh
Q 020362 170 RVDRM 174 (327)
Q Consensus 170 Rv~~M 174 (327)
|...|
T Consensus 235 R~~~~ 239 (301)
T PRK04220 235 RARVS 239 (301)
T ss_pred HHhhh
Confidence 99888
No 14
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.34 E-value=5.8e-12 Score=108.88 Aligned_cols=133 Identities=20% Similarity=0.318 Sum_probs=86.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch-hcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV-YKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv-y~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
++++.|+|+|++||||||+|..||+++|..+++.|.+.. ..|.++ -+++ +......|.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~-----------------~~~~---~~~g~~~~~~ 61 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSI-----------------PEIF---EEEGEAAFRE 61 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCH-----------------HHHH---HHHCHHHHHH
Confidence 456799999999999999999999999999999997531 111111 0111 1234466877
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh-hhh-ccHHHHHHhh
Q 020362 109 HASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR-MVE-LGLVEEVKQM 186 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~-Ml~-~Gl~~Ev~~l 186 (327)
.....+.++.......|..||+..+...... .++ -...++||++|.+.+.+|+.+|... ++. ....+++..+
T Consensus 62 ~~~~~~~~l~~~~~~vi~~g~~~~~~~~~r~----~l~--~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ 135 (175)
T PRK00131 62 LEEEVLAELLARHNLVISTGGGAVLREENRA----LLR--ERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDL 135 (175)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCEeecHHHHH----HHH--hCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHH
Confidence 7778888887655565666765443222111 111 2357899999999999999887642 222 2344455555
Q ss_pred hc
Q 020362 187 FD 188 (327)
Q Consensus 187 ~~ 188 (327)
+.
T Consensus 136 ~~ 137 (175)
T PRK00131 136 YE 137 (175)
T ss_pred HH
Confidence 54
No 15
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=9.8e-12 Score=107.59 Aligned_cols=143 Identities=17% Similarity=0.259 Sum_probs=98.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
.+-+-+|+|+|++||||||++..|++.++.++|.+|.+|.-.+.+-++ +|+|-.--|.+ .|.+
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~--------~GipLnD~DR~---------pWL~ 71 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMT--------QGIPLNDDDRW---------PWLK 71 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHh--------cCCCCCccccc---------HHHH
Confidence 344569999999999999999999999999999999999766665555 46663221222 2332
Q ss_pred HHHHHHHHHHhCCCCeEEEcCch---HHHHHHHcCCc---hhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHH
Q 020362 109 HASLAIESILSRDRLPIIAGGSS---SYIKALVNGDA---AEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEE 182 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~---~Y~~all~~~~---~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~E 182 (327)
.....+..-...|+. +|+-+|. .|++.|...+. +.........|++|.++.+++.+|+..|-.++|..-|++.
T Consensus 72 ~i~~~~~~~l~~~q~-vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleS 150 (191)
T KOG3354|consen 72 KIAVELRKALASGQG-VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLES 150 (191)
T ss_pred HHHHHHHHHhhcCCe-EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHH
Confidence 222222222234665 4445565 37665543220 0011234578999999999999999999999999999999
Q ss_pred HHhhhcC
Q 020362 183 VKQMFDP 189 (327)
Q Consensus 183 v~~l~~~ 189 (327)
.-+.++.
T Consensus 151 Qf~~LE~ 157 (191)
T KOG3354|consen 151 QFATLEA 157 (191)
T ss_pred HHHhccC
Confidence 8888874
No 16
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.30 E-value=1.5e-12 Score=116.56 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=83.9
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCH----
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTA---- 103 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~---- 103 (327)
|+.+..+|+|+||||||||||+..|+..++. +|..+.++|++|+..|..|.+||+++.-++...+..
T Consensus 1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~~~---------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T PRK00300 1 MMRRGLLIVLSGPSGAGKSTLVKALLERDPN---------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFL 71 (205)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCcc---------ceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcE
Confidence 4567789999999999999999999998752 566778999999999989999887754322111000
Q ss_pred ------HHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhh
Q 020362 104 ------TDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVD 172 (327)
Q Consensus 104 ------~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~ 172 (327)
..+.......++.....|+.+|+.. +......+.+.. .-...++.+.++.+++.+|+..|.+
T Consensus 72 ~~~~~~~~~y~~~~~~i~~~l~~g~~vi~dl-~~~g~~~l~~~~------~~~~~I~i~~~s~~~l~~Rl~~R~~ 139 (205)
T PRK00300 72 EWAEVFGNYYGTPRSPVEEALAAGKDVLLEI-DWQGARQVKKKM------PDAVSIFILPPSLEELERRLRGRGT 139 (205)
T ss_pred EEEEECCccccCcHHHHHHHHHcCCeEEEeC-CHHHHHHHHHhC------CCcEEEEEECcCHHHHHHHHHhcCC
Confidence 1111112456777888888766632 221112222211 0113344456788999999999963
No 17
>PRK13948 shikimate kinase; Provisional
Probab=99.28 E-value=2.3e-11 Score=108.64 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=89.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchh-cCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVY-KGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy-~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
.+.+..|+++|++||||||++..||+++|..+|++|....- -|++| . +....+....|+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si-------~-------------~if~~~Ge~~fR 66 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSI-------P-------------EIFRHLGEAYFR 66 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCH-------H-------------HHHHHhCHHHHH
Confidence 45678999999999999999999999999999999964311 12211 0 111235667899
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCch-H---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhcc-HHHH
Q 020362 108 NHASLAIESILSRDRLPIIAGGSS-S---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELG-LVEE 182 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~-~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~G-l~~E 182 (327)
+...+.++++...+...|.+||-. . +.+.+. -...++||+++.+.+.+||..+-..++..+ ..++
T Consensus 67 ~~E~~~l~~l~~~~~~VIa~GgG~v~~~~n~~~l~----------~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~ 136 (182)
T PRK13948 67 RCEAEVVRRLTRLDYAVISLGGGTFMHEENRRKLL----------SRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGR 136 (182)
T ss_pred HHHHHHHHHHHhcCCeEEECCCcEEcCHHHHHHHH----------cCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHH
Confidence 988888888876666655566522 1 111111 124688999999999999965533344322 4567
Q ss_pred HHhhhcC
Q 020362 183 VKQMFDP 189 (327)
Q Consensus 183 v~~l~~~ 189 (327)
+.++++.
T Consensus 137 l~~l~~~ 143 (182)
T PRK13948 137 IRTLLNE 143 (182)
T ss_pred HHHHHHH
Confidence 7777764
No 18
>PRK13946 shikimate kinase; Provisional
Probab=99.22 E-value=4.1e-11 Score=106.47 Aligned_cols=131 Identities=21% Similarity=0.339 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc-hhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ-VYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q-vy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
.++.|+|+|++||||||++..||+++|..++++|.+- .-.|++ ..+ ..+.+....|++.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~-------~~e-------------~~~~~ge~~~~~~ 68 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMT-------IAE-------------IFAAYGEPEFRDL 68 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCC-------HHH-------------HHHHHCHHHHHHH
Confidence 3568999999999999999999999999999999642 111111 111 0123455678777
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHH-HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhh-hh-ccHHHHHHhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYI-KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRM-VE-LGLVEEVKQM 186 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~-~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~M-l~-~Gl~~Ev~~l 186 (327)
..+.+..+...+.. ||++|.+.|+ ..... .+ +-..+.|||++|.+++.+|+..|..+. +. ....+.++.+
T Consensus 69 e~~~l~~l~~~~~~-Vi~~ggg~~~~~~~r~----~l--~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~ 141 (184)
T PRK13946 69 ERRVIARLLKGGPL-VLATGGGAFMNEETRA----AI--AEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARL 141 (184)
T ss_pred HHHHHHHHHhcCCe-EEECCCCCcCCHHHHH----HH--HcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHH
Confidence 78888888766654 5554434332 11110 00 113568999999999999999887653 22 2234555555
Q ss_pred hc
Q 020362 187 FD 188 (327)
Q Consensus 187 ~~ 188 (327)
++
T Consensus 142 ~~ 143 (184)
T PRK13946 142 ME 143 (184)
T ss_pred HH
Confidence 54
No 19
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.22 E-value=4.9e-12 Score=110.92 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=78.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHH------
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDF------ 106 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f------ 106 (327)
++|+|+||+|||||||+..|++.++...+ ...+.|++|...+..|..||+++.-.+...+..++|
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~---------~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKF---------SISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEV 72 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccc---------cccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEE
Confidence 68999999999999999999998765332 235678888888888988887763322111111111
Q ss_pred ----HHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccc-eEEEEEeCCHHHHHHHhhhhhh
Q 020362 107 ----RNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE-CFFLWVDVSLPVLHSFVSERVD 172 (327)
Q Consensus 107 ----~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~-~~~i~L~~~~e~L~~RL~~Rv~ 172 (327)
+......++.++..|+.+|+....... +.+.+.. .+ ..++++.++.+.+.+|+.+|.+
T Consensus 73 ~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~-~~~~~~~-------~~~~~i~~~~~~~e~~~~Rl~~r~~ 135 (180)
T TIGR03263 73 HGNYYGTPKSPVEEALAAGKDVLLEIDVQGA-RQVKKKF-------PDAVSIFILPPSLEELERRLRKRGT 135 (180)
T ss_pred CCeeeCCcHHHHHHHHHCCCeEEEECCHHHH-HHHHHhC-------CCcEEEEEECCCHHHHHHHHHHcCC
Confidence 112245677788889887774322211 1122111 12 3345557778999999998854
No 20
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.21 E-value=7.8e-11 Score=103.89 Aligned_cols=134 Identities=16% Similarity=0.250 Sum_probs=87.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
.+..|+|+|++||||||++..||+.++..++++|....- +.|. ++....+.+....|+...
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~--------------~~g~-----~i~~~~~~~g~~~fr~~e 63 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK--------------RTGA-----DIGWVFDVEGEEGFRDRE 63 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHH--------------HhCc-----CHhHHHHHhCHHHHHHHH
Confidence 356799999999999999999999999999999974211 1111 111112345678888888
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh-hhhc-cHHHHHHhhhc
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR-MVEL-GLVEEVKQMFD 188 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~-Ml~~-Gl~~Ev~~l~~ 188 (327)
.+.++++...+..+|.+||.......-. .. ......+|||++|.+++.+|+..+-.+ ++.. ...+.+..+++
T Consensus 64 ~~~l~~l~~~~~~vi~~ggg~v~~~~~~-----~~-l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~ 137 (172)
T PRK05057 64 EKVINELTEKQGIVLATGGGSVKSRETR-----NR-LSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALAN 137 (172)
T ss_pred HHHHHHHHhCCCEEEEcCCchhCCHHHH-----HH-HHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Confidence 8888888766666666776432211100 00 111246899999999999999766544 3322 23344555655
Q ss_pred C
Q 020362 189 P 189 (327)
Q Consensus 189 ~ 189 (327)
.
T Consensus 138 ~ 138 (172)
T PRK05057 138 E 138 (172)
T ss_pred H
Confidence 3
No 21
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.20 E-value=8.7e-12 Score=111.55 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=83.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCH------
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTA------ 103 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~------ 103 (327)
.++++|+|+||+|||||||+..|.++++. ++.-.+.+|++|.+.|.+|+.||+++.-++......
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~---------~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~ 72 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPD---------FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEW 72 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCc---------cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEE
Confidence 35789999999999999999999987642 234468899999999999999999854322111111
Q ss_pred ----HHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccc--eEEEEEeC-CHHHHHHHhhhhh
Q 020362 104 ----TDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE--CFFLWVDV-SLPVLHSFVSERV 171 (327)
Q Consensus 104 ----~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~--~~~i~L~~-~~e~L~~RL~~Rv 171 (327)
+.|+-...+.++...+.|+.+|+..- .--.+.+ +..++ ..+|++.+ +.+++.+|+.+|.
T Consensus 73 ~~~~g~~YGt~~~~i~~~~~~g~~~i~d~~-~~g~~~l--------~~~~~~~~~~Ifi~pps~e~l~~RL~~R~ 138 (186)
T PRK14737 73 AEVHDNYYGTPKAFIEDAFKEGRSAIMDID-VQGAKII--------KEKFPERIVTIFIEPPSEEEWEERLIHRG 138 (186)
T ss_pred EEECCeeecCcHHHHHHHHHcCCeEEEEcC-HHHHHHH--------HHhCCCCeEEEEEECCCHHHHHHHHHhcC
Confidence 12223335668888899998877632 1111111 11222 25677766 5799999998884
No 22
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.19 E-value=1.7e-11 Score=104.29 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=77.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHH--------
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATD-------- 105 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~-------- 105 (327)
+|+|+||||||||||+..|++.++..+. .-...+|++|...|..|++||+++..++...+..+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~--------~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~ 72 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFG--------FSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFH 72 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccce--------ecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEc
Confidence 4789999999999999999998764311 123457899999999999999998654433222222
Q ss_pred --HHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCC
Q 020362 106 --FRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVS 159 (327)
Q Consensus 106 --f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~ 159 (327)
++....+.++++.++|++||+.. +...++.+... ..+..+|++.+|
T Consensus 73 ~~~yg~~~~~i~~~~~~g~~~il~~-~~~~~~~l~~~-------~~~~~~I~i~~~ 120 (137)
T cd00071 73 GNYYGTSKAAVEEALAEGKIVILEI-DVQGARQVKKS-------YPDAVSIFILPP 120 (137)
T ss_pred CEEecCcHHHHHHHHhCCCeEEEEe-cHHHHHHHHHc-------CCCeEEEEEECC
Confidence 22245677888899999877654 55555544432 246778999998
No 23
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.18 E-value=3.1e-10 Score=98.11 Aligned_cols=114 Identities=20% Similarity=0.332 Sum_probs=70.2
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHHH
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLAI 114 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~i 114 (327)
|+|+||+||||||+|..|++.++..+|+.|.+..+..+.... .+.++. +.+...|.....+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~--------~~~~~~---------~~~~~~~~~~~~~~~ 63 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMS--------AGIPLN---------DDDRWPWLQNLNDAS 63 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHH--------cCCCCC---------hhhHHHHHHHHHHHH
Confidence 578999999999999999999999999999976432221111 111110 011223433333344
Q ss_pred HHHHhCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 115 ESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 115 ~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
......|+..||..| .+ |.+.+. ....++.++||++|.+++.+|+..|.++
T Consensus 64 ~~~l~~~~~~Vi~~t-~~~~~~r~~~~-------~~~~~~~~i~l~~~~e~~~~R~~~R~~~ 117 (163)
T TIGR01313 64 TAAAAKNKVGIITCS-ALKRHYRDILR-------EAEPNLHFIYLSGDKDVILERMKARKGH 117 (163)
T ss_pred HHHHhcCCCEEEEec-ccHHHHHHHHH-------hcCCCEEEEEEeCCHHHHHHHHHhccCC
Confidence 445556665444433 32 222121 1224567899999999999999999743
No 24
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.14 E-value=2.9e-11 Score=107.64 Aligned_cols=123 Identities=17% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCH-------
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTA------- 103 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~------- 103 (327)
+.++++|+||+|+|||||...|-+..+. +-.++.+|++|.+.|..|+.+|+++.-...+....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l----------~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL----------RFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe----------EEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEE
Confidence 5789999999999999999999888632 33467899999999999999999854322211111
Q ss_pred ---HHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhccc-ceEEEEEe-CCHHHHHHHhhhhhh
Q 020362 104 ---TDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRY-ECFFLWVD-VSLPVLHSFVSERVD 172 (327)
Q Consensus 104 ---~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~-~~~~i~L~-~~~e~L~~RL~~Rv~ 172 (327)
+.|.......++...+.|+.+|+.=. ....+. .+..+ +...|++. ++.++|.+||..|-.
T Consensus 73 ~~~gnyYGT~~~~ve~~~~~G~~vildId-~qGa~q--------vk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt 137 (191)
T COG0194 73 EYHGNYYGTSREPVEQALAEGKDVILDID-VQGALQ--------VKKKMPNAVSIFILPPSLEELERRLKGRGT 137 (191)
T ss_pred EEcCCcccCcHHHHHHHHhcCCeEEEEEe-hHHHHH--------HHHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence 13333345667777777877665421 011111 22223 45566655 567999999999963
No 25
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.12 E-value=2.7e-10 Score=95.69 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=73.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch-hcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV-YKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASL 112 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv-y~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~ 112 (327)
+|+++||+||||||++..|++.++..+|+.|.++. ..+ +..++.. +.. . ....+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~----~~~~~~~-------------~~~-~-~~~~~~~~~~~ 61 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG----EDPPSPS-------------DYI-E-AEERAYQILNA 61 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC----SSSGCCC-------------CCH-H-HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc----cccccch-------------hHH-H-HHHHHHHHHHH
Confidence 68999999999999999999999999999998652 111 1110000 000 0 11223334445
Q ss_pred HHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 113 AIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 113 ~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
.+....+.|. .+|+..|+++.+....-....-...++..+++|+++.+++.+|+..|...
T Consensus 62 ~~~~~l~~g~-~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 62 AIRKALRNGN-SVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp HHHHHHHTT--EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred HHHHHHHcCC-CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 5656566565 57777766543221100000112345788999999999999999999765
No 26
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.11 E-value=1.2e-09 Score=95.46 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=76.4
Q ss_pred EcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHHHHHH
Q 020362 38 MGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLAIESI 117 (327)
Q Consensus 38 ~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~i~~i 117 (327)
+|++|||||||+..|+..++..++++|.++....+. | ...|+++. +-....|...........
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~----~----~~~g~~~~---------~~~~~~~~~~~~~~~~~~ 63 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIE----K----MASGEPLN---------DDDRKPWLQALNDAAFAM 63 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhc----c----ccCCCCCC---------hhhHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999765211110 0 01232221 112233444433333333
Q ss_pred HhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhc
Q 020362 118 LSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFD 188 (327)
Q Consensus 118 ~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~ 188 (327)
...+...||+ +|++. +...+ . ......++.++||++|.++|.+|+.+|.++.....+++....-++
T Consensus 64 ~~~~~~~viv-~s~~~-~~~r~-~--~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~e 129 (163)
T PRK11545 64 QRTNKVSLIV-CSALK-KHYRD-L--LREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQ 129 (163)
T ss_pred HHcCCceEEE-Eecch-HHHHH-H--HHccCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcC
Confidence 3445666666 45532 11111 0 001235689999999999999999999865434445555443343
No 27
>PRK00625 shikimate kinase; Provisional
Probab=99.10 E-value=2.6e-10 Score=101.03 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=83.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc-CcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASL 112 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~ 112 (327)
.|+|+|++||||||++..||++++..+|++|.+-..+ |.+.. .+.. +..+.+....|++....
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~---~~i~-------------eif~~~Ge~~fr~~E~~ 65 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALY---SSPK-------------EIYQAYGEEGFCREEFL 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCC---CCHH-------------HHHHHHCHHHHHHHHHH
Confidence 5899999999999999999999999999999764321 21100 0011 11123566779988888
Q ss_pred HHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcC
Q 020362 113 AIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDP 189 (327)
Q Consensus 113 ~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~ 189 (327)
.++++.. +...|.+||....-...+. ..+...+++||+++.+++.+||..|-..--..+ .+++.++++.
T Consensus 66 ~l~~l~~-~~~VIs~GGg~~~~~e~~~------~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~-~~~~~~ll~~ 134 (173)
T PRK00625 66 ALTSLPV-IPSIVALGGGTLMIEPSYA------HIRNRGLLVLLSLPIATIYQRLQKRGLPERLKH-APSLEEILSQ 134 (173)
T ss_pred HHHHhcc-CCeEEECCCCccCCHHHHH------HHhcCCEEEEEECCHHHHHHHHhcCCCCcccCc-HHHHHHHHHH
Confidence 8887754 4444556653321111111 012235689999999999999998832100112 4667777654
No 28
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.09 E-value=1.8e-09 Score=95.60 Aligned_cols=117 Identities=24% Similarity=0.372 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
++++|+|+||+|||||+|+..|.+.++..+ ......+|++|...|..|+.||+++ ...|.++.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~--------~~~v~~TTR~~r~~E~~g~~y~fvs---------~~~f~~~~ 63 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKF--------GRVVSHTTRPPRPGEVDGVDYHFVS---------KEEFERMI 63 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTE--------EEEEEEESS-GGTTS-TTTSEEE-----------HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhccccc--------ccceeecccCCcccccCCcceEEEe---------echhhhhh
Confidence 367999999999999999999999986422 1335678999999999999998864 33444332
Q ss_pred -------------------HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEe-CCHHHHHHHhhhh
Q 020362 111 -------------------SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVD-VSLPVLHSFVSER 170 (327)
Q Consensus 111 -------------------~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~-~~~e~L~~RL~~R 170 (327)
...++.+...|+.+|+... ..-++.|.. ......+|++. .+.+.|.+|+.+|
T Consensus 64 ~~~~fie~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~-~~g~~~L~~-------~~~~~~~IfI~~~s~~~l~~~l~~r 135 (183)
T PF00625_consen 64 KAGEFIEYGEYDGNYYGTSKSAIDKVLEEGKHCILDVD-PEGVKQLKK-------AGFNPIVIFIKPPSPEVLKRRLRRR 135 (183)
T ss_dssp HTTHEEEEEEETTEEEEEEHHHHHHHHHTTTEEEEEET-HHHHHHHHH-------CTTTEEEEEEEESSHHHHHHHHHTT
T ss_pred ccccEEEEeeecchhhhhccchhhHhhhcCCcEEEEcc-HHHHHHHHh-------cccCceEEEEEccchHHHHHHHhcc
Confidence 4667888888999877643 222233322 13566788885 4578999999887
Q ss_pred hh
Q 020362 171 VD 172 (327)
Q Consensus 171 v~ 172 (327)
-.
T Consensus 136 ~~ 137 (183)
T PF00625_consen 136 GD 137 (183)
T ss_dssp TH
T ss_pred cc
Confidence 53
No 29
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.08 E-value=4.9e-10 Score=97.65 Aligned_cols=130 Identities=20% Similarity=0.359 Sum_probs=80.8
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc-hhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ-VYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q-vy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
+.|+|+|++||||||+|..||+++|..+++.|.+. ...|+++. + ++ +.+....|++...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~-------~----------~~---~~~g~~~~~~~e~ 62 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVA-------E----------IV---EREGWAGFRARES 62 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHH-------H----------HH---HHHCHHHHHHHHH
Confidence 46888999999999999999999999999999875 22233221 1 01 1234566877777
Q ss_pred HHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh---h-h-hccHHHHHHhh
Q 020362 112 LAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR---M-V-ELGLVEEVKQM 186 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~---M-l-~~Gl~~Ev~~l 186 (327)
+.++.+ ..+...|.+||...+.... ..+ .+-...+|||++|.+++.+||..|-.. + + ...+.++++++
T Consensus 63 ~~~~~~-~~~~~vi~~ggg~vl~~~~-----~~~-l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~ 135 (171)
T PRK03731 63 AALEAV-TAPSTVIATGGGIILTEEN-----RHF-MRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEV 135 (171)
T ss_pred HHHHHh-cCCCeEEECCCCccCCHHH-----HHH-HHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHH
Confidence 777654 4455544455532211100 001 111346899999999999999887422 1 1 12245666666
Q ss_pred hcC
Q 020362 187 FDP 189 (327)
Q Consensus 187 ~~~ 189 (327)
++.
T Consensus 136 ~~~ 138 (171)
T PRK03731 136 LAE 138 (171)
T ss_pred HHH
Confidence 653
No 30
>PRK13947 shikimate kinase; Provisional
Probab=99.08 E-value=4.5e-10 Score=97.63 Aligned_cols=130 Identities=20% Similarity=0.274 Sum_probs=79.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
.|+|+|++||||||+|..||+++|..+|++|.... .. ++.+ ..+ ++ +.+....|+......
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~--~~---~g~~-~~~----------~~---~~~ge~~~~~~e~~~ 63 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIE--KM---TGMT-VAE----------IF---EKDGEVRFRSEEKLL 63 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhh--hh---cCCc-HHH----------HH---HHhChHHHHHHHHHH
Confidence 59999999999999999999999999999997531 10 1111 101 01 123345577666677
Q ss_pred HHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhh--hccHHHHHHhhhc
Q 020362 114 IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMV--ELGLVEEVKQMFD 188 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml--~~Gl~~Ev~~l~~ 188 (327)
++.+...+...|-+||....-...+. .+ .. ...+|||+++.+.+.+|+..|-.++. ...+.+++.++++
T Consensus 64 ~~~l~~~~~~vi~~g~g~vl~~~~~~----~l-~~-~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~ 134 (171)
T PRK13947 64 VKKLARLKNLVIATGGGVVLNPENVV----QL-RK-NGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLK 134 (171)
T ss_pred HHHHhhcCCeEEECCCCCcCCHHHHH----HH-Hh-CCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHH
Confidence 77776554443334442110000000 01 11 23589999999999999988755433 3346677766664
No 31
>PLN02199 shikimate kinase
Probab=99.06 E-value=2.3e-10 Score=109.04 Aligned_cols=131 Identities=18% Similarity=0.386 Sum_probs=87.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch--hcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV--YKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv--y~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
.+.|+|+|.+||||||++..||+.+|..+|++|.+-. +.|+.|. +..+.+....|++.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~--------------------eIf~~~GE~~FR~~ 161 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVA--------------------EIFVHHGENFFRGK 161 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHH--------------------HHHHHhCHHHHHHH
Confidence 5689999999999999999999999999999997542 2333221 11224667889999
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhh--hhhh-hhhc--c-----H
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSE--RVDR-MVEL--G-----L 179 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~--Rv~~-Ml~~--G-----l 179 (327)
..+.++++.......|-+|| |........ .. .+ ...+|||+++.+.+.+||.. .-.. ++.. + .
T Consensus 162 E~e~L~~L~~~~~~VIStGG-G~V~~~~n~----~~-L~-~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~ 234 (303)
T PLN02199 162 ETDALKKLSSRYQVVVSTGG-GAVIRPINW----KY-MH-KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVA 234 (303)
T ss_pred HHHHHHHHHhcCCEEEECCC-cccCCHHHH----HH-Hh-CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhH
Confidence 99999998765555555677 322111100 11 11 35789999999999999985 1122 2321 1 1
Q ss_pred HHHHHhhhcC
Q 020362 180 VEEVKQMFDP 189 (327)
Q Consensus 180 ~~Ev~~l~~~ 189 (327)
.+++.+|++.
T Consensus 235 ~~~L~~L~~~ 244 (303)
T PLN02199 235 FKRLSAIWDE 244 (303)
T ss_pred HHHHHHHHHH
Confidence 4677777764
No 32
>PRK13949 shikimate kinase; Provisional
Probab=99.05 E-value=6.4e-10 Score=97.93 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=71.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
.|+|+|++||||||++..||+.++..+|++|.+- .+.+ ++ +..+ ..+......|++.....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i-~~~~----~~-~~~~-------------~~~~~g~~~fr~~e~~~ 63 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFI-ENRF----HK-TVGD-------------IFAERGEAVFRELERNM 63 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHH-HHHH----Cc-cHHH-------------HHHHhCHHHHHHHHHHH
Confidence 5899999999999999999999999999999642 1110 00 0001 11234566788888888
Q ss_pred HHHHHhCCCCeEEEcCchH--HH-HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhh
Q 020362 114 IESILSRDRLPIIAGGSSS--YI-KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSE 169 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~--Y~-~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~ 169 (327)
++++.......|.+||... +- ..++ .. ...+|||+++.+.+.+||..
T Consensus 64 l~~l~~~~~~vis~Ggg~~~~~~~~~~l--------~~-~~~vi~L~~~~~~~~~Ri~~ 113 (169)
T PRK13949 64 LHEVAEFEDVVISTGGGAPCFFDNMELM--------NA-SGTTVYLKVSPEVLFVRLRL 113 (169)
T ss_pred HHHHHhCCCEEEEcCCcccCCHHHHHHH--------Hh-CCeEEEEECCHHHHHHHHhc
Confidence 8887555554444665321 10 0111 11 24688999999999999974
No 33
>PRK06217 hypothetical protein; Validated
Probab=99.04 E-value=3.3e-09 Score=93.98 Aligned_cols=103 Identities=14% Similarity=0.214 Sum_probs=64.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
.|+|+|++||||||+|..|++.+|.++|+.|.+.--. .+.+ +. .......+.+.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--------------~~~~--~~------~~~~~~~~~~~~--- 57 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--------------TDPP--FT------TKRPPEERLRLL--- 57 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--------------CCCC--cc------ccCCHHHHHHHH---
Confidence 5999999999999999999999999999999864211 0100 00 001112232222
Q ss_pred HHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 114 IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
++.+.. +..-||.|+...|.+.+. ... ..+|||++|.+++.+|+..|.
T Consensus 58 ~~~~~~-~~~~vi~G~~~~~~~~~~--------~~~-d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 58 LEDLRP-REGWVLSGSALGWGDPLE--------PLF-DLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred HHHHhc-CCCEEEEccHHHHHHHHH--------hhC-CEEEEEECCHHHHHHHHHcCc
Confidence 233322 344456654333333222 223 357899999999999999984
No 34
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.02 E-value=1e-09 Score=93.29 Aligned_cols=111 Identities=19% Similarity=0.287 Sum_probs=73.1
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch-hcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV-YKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv-y~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
|+|+|++||||||+|..||+.+|..++++|.+.. ..|.+ ..+ ..+.+....|.....+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~-------~~~-------------~~~~~~~~~~~~~e~~~ 61 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMS-------IPE-------------IFAEEGEEGFRELEREV 61 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCC-------HHH-------------HHHHHCHHHHHHHHHHH
Confidence 7899999999999999999999999999997531 11111 111 01123456677776667
Q ss_pred HHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 114 IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+..+...+.. ||++|++...+.-.. + ...-...++||++|.+++.+|+.+|.
T Consensus 62 ~~~~~~~~~~-vi~~g~~~i~~~~~~----~-~~~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 62 LLLLLTKENA-VIATGGGAVLREENR----R-LLLENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred HHHHhccCCc-EEECCCCccCcHHHH----H-HHHcCCeEEEEeCCHHHHHHHhccCC
Confidence 7777766655 555454432221100 0 11124579999999999999998884
No 35
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.00 E-value=3.7e-09 Score=93.94 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=69.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH--
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH-- 109 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~-- 109 (327)
..+++|+||+|||||||+..|+..++.+++-.|+.. |..+... +..++. ++..+|.++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~---------~~~~~~~~~~~ 61 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYI--------TRPASAG---SENHIA---------LSEQEFFTRAG 61 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEEC--------CCccchh---HHhhee---------EcHHHHHHHHH
Confidence 358999999999999999999999887777666532 1111111 111111 111222221
Q ss_pred -----------------HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 110 -----------------ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 110 -----------------a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.. .+++..+.|+. ||++|+..+.+.+... ..-...+|||++|.+++.+||..|-
T Consensus 62 ~~~~~~~~~~~g~~yg~~~-~~~~~l~~g~~-VI~~G~~~~~~~~~~~------~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 62 QNLFALSWHANGLYYGVGI-EIDLWLHAGFD-VLVNGSRAHLPQARAR------YQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred CCchhhHHHHhCCccCCcH-HHHHHHhCCCE-EEEeChHHHHHHHHHH------cCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 12 24555566664 6677877665444321 1224678899999999999998873
No 36
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.00 E-value=7.4e-09 Score=91.80 Aligned_cols=132 Identities=20% Similarity=0.351 Sum_probs=78.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
..+++|+|++|||||||+..|+..++...|+.|.+.-... + .....|+++.-- ....|.....
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~--~------r~~~~g~~~~~~---------~~~~~~~~~~ 65 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKN--I------DKMSQGIPLTDE---------DRLPWLERLN 65 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhH--H------HHHhcCCCCCcc---------cchHHHHHHH
Confidence 4689999999999999999999999998898887532110 0 001123332110 1112333333
Q ss_pred HHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhc
Q 020362 112 LAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFD 188 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~ 188 (327)
..+.....+++-.+|+ +|.+ |.+ ++. ....++.+|||+++.+++.+|+.+|..+.+...+++.....++
T Consensus 66 ~~~~~~~~~~~~g~iv-~s~~~~~~R~-~~r------~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e 137 (176)
T PRK09825 66 DASYSLYKKNETGFIV-CSSLKKQYRD-ILR------KSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALE 137 (176)
T ss_pred HHHHHHHhcCCCEEEE-EEecCHHHHH-HHH------hhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcC
Confidence 3322222222333344 4432 222 222 1234678999999999999999999865556666766665554
No 37
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.00 E-value=2.6e-09 Score=91.03 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=67.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH-H
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS-L 112 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~-~ 112 (327)
+|+|+|++||||||+|..|++.++..+++.|.+......+. ...|.+. ... ....|..... .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~--------~~~~~~~------~~~---~~~~~~~~~~~~ 63 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAK--------MAAGIPL------NDE---DRWPWLQALTDA 63 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHH--------HHcCCCC------Ccc---chhhHHHHHHHH
Confidence 58999999999999999999999999999998642100000 0011110 000 0122322222 2
Q ss_pred HHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 113 AIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 113 ~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
..+.+...+.. +|+.++++ |.+.+.. . ....+..+++|++|.+++.+|+.+|-.+
T Consensus 64 ~~~~l~~~~~~-vVid~~~~~~~~r~~~~~-~----~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (150)
T cd02021 64 LLAKLASAGEG-VVVACSALKRIYRDILRG-G----AANPRVRFVHLDGPREVLAERLAARKGH 121 (150)
T ss_pred HHHHHHhCCCC-EEEEeccccHHHHHHHHh-c----CCCCCEEEEEEECCHHHHHHHHHhcccC
Confidence 22223234554 44444442 2211111 0 0134678999999999999999999644
No 38
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.00 E-value=5.1e-09 Score=92.93 Aligned_cols=124 Identities=15% Similarity=0.234 Sum_probs=83.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCc-----------c
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA-----------N 100 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~-----------~ 100 (327)
.++|+|+||+||||+||+..|.+.++-. +......+|+.|.+.|..|+.||+++.-.... .
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~--------~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~ 73 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDA--------FERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGE 73 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcc--------eEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEE
Confidence 4689999999999999999999986411 22345678899999999999998875221110 1
Q ss_pred cCHHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEe-CCHHHHHHHhhhhhh
Q 020362 101 FTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVD-VSLPVLHSFVSERVD 172 (327)
Q Consensus 101 ~s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~-~~~e~L~~RL~~Rv~ 172 (327)
++ +.|+......++++.+.|+.+|+.+. ...++.+-. ...+..+|++. ++.++|.+||..|.+
T Consensus 74 ~~-g~~YGt~~~~i~~~~~~~~~~ild~~-~~~~~~l~~-------~~~~~~vIfi~~~s~~~l~~rl~~R~~ 137 (184)
T smart00072 74 YS-GNYYGTSKETIRQVAEQGKHCLLDID-PQGVKQLRK-------AQLYPIVIFIAPPSSEELERRLRGRGT 137 (184)
T ss_pred Ec-CcCcccCHHHHHHHHHcCCeEEEEEC-HHHHHHHHH-------hCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 11 23334445567888888888777654 433333322 12355688886 677889999998854
No 39
>PRK06762 hypothetical protein; Provisional
Probab=98.97 E-value=6e-09 Score=90.35 Aligned_cols=127 Identities=17% Similarity=0.290 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC--CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF--PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~--~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
++.+|+|+|++||||||+|..|++++ +..+++.|.+. +.+.-. + + .+. .+....+..
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r--~~l~~~------------~----~--~~~-~~~~~~~~~ 59 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR--RDMLRV------------K----D--GPG-NLSIDLIEQ 59 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH--HHhccc------------c----C--CCC-CcCHHHHHH
Confidence 36899999999999999999999998 56678888754 211000 0 0 010 122222222
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccH-HHHHH
Q 020362 109 HASLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGL-VEEVK 184 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl-~~Ev~ 184 (327)
.++.....|. .||+.++.. |.+ ++..+ .-....+..++||++|.+++.+|+.+|.. ..++ .++++
T Consensus 60 ----~~~~~~~~g~-~vild~~~~~~~~~~-~~~~l--~~~~~~~~~~v~Ldap~e~~~~R~~~R~~---~~~~~~~~l~ 128 (166)
T PRK06762 60 ----LVRYGLGHCE-FVILEGILNSDRYGP-MLKEL--IHLFRGNAYTYYFDLSFEETLRRHSTRPK---SHEFGEDDMR 128 (166)
T ss_pred ----HHHHHHhCCC-EEEEchhhccHhHHH-HHHHH--HHhcCCCeEEEEEeCCHHHHHHHHhcccc---cccCCHHHHH
Confidence 2233344565 456666531 221 11110 00112357899999999999999999964 1222 45666
Q ss_pred hhhcC
Q 020362 185 QMFDP 189 (327)
Q Consensus 185 ~l~~~ 189 (327)
.+++.
T Consensus 129 ~~~~~ 133 (166)
T PRK06762 129 RWWNP 133 (166)
T ss_pred HHHhh
Confidence 66643
No 40
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.96 E-value=2.5e-09 Score=110.17 Aligned_cols=137 Identities=15% Similarity=0.197 Sum_probs=89.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc-CcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
+.+.|+++|++||||||+++.||+++|.++|++|..-.-+ |++|. +..+.+....|++.
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~--------------------eif~~~Ge~~FR~~ 64 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIP--------------------SYFEEYGEPAFREV 64 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHH--------------------HHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999753211 32221 11234567889999
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhcc-HHHHHHhhhc
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELG-LVEEVKQMFD 188 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~G-l~~Ev~~l~~ 188 (327)
..+.++++.......|-+||.......-..-+ .++ .+-...+|||+++.+++.+|+..+..+.+-.+ -.++++++|+
T Consensus 65 E~~~l~~~~~~~~~VIs~GGG~v~~~~n~~~L-~~~-~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~ 142 (542)
T PRK14021 65 EADVVADMLEDFDGIFSLGGGAPMTPSTQHAL-ASY-IAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFK 142 (542)
T ss_pred HHHHHHHHHhcCCeEEECCCchhCCHHHHHHH-HHH-HhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHH
Confidence 99999988755544444777321110000000 000 01234789999999999999976654444333 3567888876
Q ss_pred C
Q 020362 189 P 189 (327)
Q Consensus 189 ~ 189 (327)
.
T Consensus 143 ~ 143 (542)
T PRK14021 143 Q 143 (542)
T ss_pred H
Confidence 4
No 41
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.95 E-value=8.7e-10 Score=99.86 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccC-------
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFT------- 102 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s------- 102 (327)
..+++|+|+||+|||||||+..|.+.. .. ++.-....|..|...|..|..||+++.-+......
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~-~~--------~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~ 81 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERK-LP--------FHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEW 81 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcC-Cc--------ccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEE
Confidence 457899999999999999999998652 11 22234566777778888999998775432111000
Q ss_pred ---HHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEE-eCCHHHHHHHhhhhhh
Q 020362 103 ---ATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWV-DVSLPVLHSFVSERVD 172 (327)
Q Consensus 103 ---~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L-~~~~e~L~~RL~~Rv~ 172 (327)
.+.|+......++...+.|+.+|+ ..+..+++.+.+. ..+..++++ .++.++|.+|+..|.+
T Consensus 82 ~~~~g~~YGt~~~~i~~~~~~g~~vi~-~~~~~g~~~l~~~-------~pd~~~if~~pps~e~l~~Rl~~R~~ 147 (206)
T PRK14738 82 AEVYGNYYGVPKAPVRQALASGRDVIV-KVDVQGAASIKRL-------VPEAVFIFLAPPSMDELTRRLELRRT 147 (206)
T ss_pred EEEcCceecCCHHHHHHHHHcCCcEEE-EcCHHHHHHHHHh-------CCCeEEEEEeCCCHHHHHHHHHHcCC
Confidence 011211122467777788887655 4455555444321 123344444 4677899999999853
No 42
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.94 E-value=8.5e-09 Score=90.08 Aligned_cols=116 Identities=16% Similarity=0.327 Sum_probs=68.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
+|.|.||+||||||+|..||+++|.++||+-. +||+|---- ..+.+|... +..-+| ++.....+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~--iFR~~A~e~-gmsl~ef~~-----~AE~~p-------~iD~~iD~r 66 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGT--IFREMARER-GMSLEEFSR-----YAEEDP-------EIDKEIDRR 66 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccH--HHHHHHHHc-CCCHHHHHH-----HHhcCc-------hhhHHHHHH
Confidence 68999999999999999999999999999654 455431000 001112111 000111 122222333
Q ss_pred HHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhh
Q 020362 114 IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVE 176 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~ 176 (327)
..++..++. ||++| .+ .+ ++...+..+.|||.+|.++-.+|+.+|-..+++
T Consensus 67 q~e~a~~~n--vVleg-rL------A~---Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~~~ 117 (179)
T COG1102 67 QKELAKEGN--VVLEG-RL------AG---WIVREYADLKIWLKAPLEVRAERIAKREGIDVD 117 (179)
T ss_pred HHHHHHcCC--eEEhh-hh------HH---HHhccccceEEEEeCcHHHHHHHHHHhcCCCHH
Confidence 334444444 45554 21 11 222235667899999999999999999654443
No 43
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.94 E-value=2e-08 Score=95.20 Aligned_cols=129 Identities=18% Similarity=0.118 Sum_probs=76.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC-CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF-PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
+++|+++|++||||||+|..|++++ +..+||.|.+.... .-.. ...+ .. +... .........
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~--~~~~------~~~~-----~~-~~~~---~~~~~~~~~ 64 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSL--FGHG------EWGE-----YK-FTKE---KEDLVTKAQ 64 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHh--cCCC------cccc-----cc-cChH---HHHHHHHHH
Confidence 5799999999999999999999999 89999999865221 0000 0000 00 0000 011112222
Q ss_pred HHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHH
Q 020362 111 SLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVE 181 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~ 181 (327)
...+.+....|.. +|+.+|+. +++.+..- .....+...+++|+++.+++.+|+..|-++.+..-.++
T Consensus 65 ~~~~~~~l~~g~~-vIid~~~~~~~~~~~~~~l---a~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~ 134 (300)
T PHA02530 65 EAAALAALKSGKS-VIISDTNLNPERRRKWKEL---AKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLR 134 (300)
T ss_pred HHHHHHHHHcCCe-EEEeCCCCCHHHHHHHHHH---HHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHH
Confidence 3334445555654 66666653 33322210 01123456689999999999999999965555444444
No 44
>PRK12338 hypothetical protein; Provisional
Probab=98.92 E-value=2.4e-08 Score=96.33 Aligned_cols=140 Identities=22% Similarity=0.335 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEE-eCCccc-hhcCcccccCCCChhhhcCccceeccccCCCcccC-----
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEII-NSDKMQ-VYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFT----- 102 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiI-s~Ds~q-vy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s----- 102 (327)
++|.+|+|.|++||||||+|..||+++|...+ +.|.++ +-++. ...+..+.-... .++-...+.+.+.+.
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~--~~~~~~P~l~~s-sy~a~~~l~~~~~~~~~~~~ 78 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGI--IGKEYAPALHKS-SYNAYTALRDKENFKNNEEL 78 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCC--CCcccCchhhcc-cHHHHhhcCCcccccchHHH
Confidence 35789999999999999999999999999866 888877 43443 111000100011 111111111111111
Q ss_pred -HHHHHHHHH---HHHHHHH---hCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhh
Q 020362 103 -ATDFRNHAS---LAIESIL---SRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMV 175 (327)
Q Consensus 103 -~~~f~~~a~---~~i~~i~---~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml 175 (327)
...|...+. ..++.+. .+++.+||+.|.++.-. ++... .+.......++++..+.+...+|...|...|-
T Consensus 79 i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~-~i~~~--~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~ 155 (319)
T PRK12338 79 ICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPG-LIDIE--QFEENASIHFFILSADEEVHKERFVKRAMEIK 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHH-HHhhh--hhcccCceEEEEEECCHHHHHHHHHHhhhccC
Confidence 233533332 2222232 25777899999775221 11100 11122356678888999999999999987653
No 45
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.92 E-value=9.4e-09 Score=90.14 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=70.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTA 103 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~ 103 (327)
..++.+|+|+|++||||||++..|++.++ ..+++.|.++ +.+.. .+ ++. ...
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r--~~~~~----------~~--------~~~---~~~ 60 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR--EILGH----------YG--------YDK---QSR 60 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH--hhcCC----------CC--------CCH---HHH
Confidence 45678999999999999999999999885 4566666543 21100 00 011 011
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEcCchHH--HHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHH
Q 020362 104 TDFRNHASLAIESILSRDRLPIIAGGSSSY--IKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVE 181 (327)
Q Consensus 104 ~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y--~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~ 181 (327)
.+.........+.+...|.. ||+.|++.+ +..+... .-.+.+.+||+++.+++.+|+.++ +......+
T Consensus 61 ~~~~~~~~~l~~~l~~~g~~-VI~~~~~~~~~~~~~~~~------~~~~~~~v~l~~~~e~~~~R~~~~---l~~~~~~~ 130 (176)
T PRK05541 61 IEMALKRAKLAKFLADQGMI-VIVTTISMFDEIYAYNRK------HLPNYFEVYLKCDMEELIRRDQKG---LYTKALKG 130 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCE-EEEEeCCcHHHHHHHHHh------hcCCeEEEEEeCCHHHHHHhchhh---HHHHHHcC
Confidence 11111111122224445655 455454543 1111110 111346899999999999998644 23333445
Q ss_pred HHHhhhcC
Q 020362 182 EVKQMFDP 189 (327)
Q Consensus 182 Ev~~l~~~ 189 (327)
++.+++..
T Consensus 131 ~~~~~~~~ 138 (176)
T PRK05541 131 EIKNVVGV 138 (176)
T ss_pred cccccccC
Confidence 66666654
No 46
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.89 E-value=1.9e-08 Score=96.78 Aligned_cols=134 Identities=19% Similarity=0.342 Sum_probs=84.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc--CcccccCCCChhhhcCccceeccccCCCcccCHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK--GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDF 106 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~--gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f 106 (327)
..+...|+|+|++||||||++..||+++|..+|++|..- .+ |+++ .+ ....+....|
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i-~~~~G~~i-------~e-------------i~~~~G~~~f 188 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREI-EREAGLSV-------SE-------------IFALYGQEGY 188 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHH-HHHhCCCH-------HH-------------HHHHHCHHHH
Confidence 345678999999999999999999999999999888542 22 2211 11 0112445678
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCchHHHH-HHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh--hh-hccHHHH
Q 020362 107 RNHASLAIESILSRDRLPIIAGGSSSYIK-ALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR--MV-ELGLVEE 182 (327)
Q Consensus 107 ~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~-all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~--Ml-~~Gl~~E 182 (327)
+....+.+.++.......||..|.+.+.. ..+. .. .-++++|||++|.+++.+|+.+|... +. .....++
T Consensus 189 r~~e~~~l~~ll~~~~~~VI~~Ggg~v~~~~~~~----~l--~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~ 262 (309)
T PRK08154 189 RRLERRALERLIAEHEEMVLATGGGIVSEPATFD----LL--LSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMED 262 (309)
T ss_pred HHHHHHHHHHHHhhCCCEEEECCCchhCCHHHHH----HH--HhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHH
Confidence 87777778876654443444433332211 0000 01 11357999999999999999887431 12 2334577
Q ss_pred HHhhhcC
Q 020362 183 VKQMFDP 189 (327)
Q Consensus 183 v~~l~~~ 189 (327)
++++++.
T Consensus 263 i~~~~~~ 269 (309)
T PRK08154 263 LRRILAS 269 (309)
T ss_pred HHHHHHH
Confidence 7777653
No 47
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.88 E-value=2.9e-09 Score=92.31 Aligned_cols=112 Identities=23% Similarity=0.285 Sum_probs=74.0
Q ss_pred CcccHHHHHHHHHHhCCCeEEeCCccchhc-CcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHHHHHHHh
Q 020362 41 TGTGKSRLAIDLATRFPAEIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLAIESILS 119 (327)
Q Consensus 41 TGSGKStLA~~LA~~~~~eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~i~~i~~ 119 (327)
+||||||++..||+.++.++|+.|.+...+ |+++.. .........|++...+++.++..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~--------------------i~~~~G~~~fr~~E~~~l~~l~~ 60 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISE--------------------IFAEEGEEAFRELESEALRELLK 60 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHH--------------------HHHcCChHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999875332 322211 11234567899999999999987
Q ss_pred CCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhcc
Q 020362 120 RDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELG 178 (327)
Q Consensus 120 ~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~G 178 (327)
.....|.+||.........+ . .+-...+|||+.+.+.+.+|+..+-.+.+-.+
T Consensus 61 ~~~~VIa~GGG~~~~~~~~~-----~-L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~ 113 (158)
T PF01202_consen 61 ENNCVIACGGGIVLKEENRE-----L-LKENGLVIYLDADPEELAERLRARDNRPLLKG 113 (158)
T ss_dssp SSSEEEEE-TTGGGSHHHHH-----H-HHHHSEEEEEE--HHHHHHHHHHHCTSGGTCS
T ss_pred cCcEEEeCCCCCcCcHHHHH-----H-HHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCC
Confidence 76666667664321111110 0 11235799999999999999988876433333
No 48
>PRK08118 topology modulation protein; Reviewed
Probab=98.87 E-value=2.1e-08 Score=88.15 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=63.8
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASL 112 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~ 112 (327)
+-|+|+||+||||||||..|++.++.++++.|.+.-..|.. ..+..++.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~--------------------------~~~~~~~~~---- 51 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWE--------------------------GVPKEEQIT---- 51 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCc--------------------------CCCHHHHHH----
Confidence 35899999999999999999999999999999764211110 011223333
Q ss_pred HHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 113 AIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 113 ~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.++++.+.. .-|+.|.-+..++..+ .....+|||++|.+++..|+.+|.
T Consensus 52 ~~~~~~~~~-~wVidG~~~~~~~~~l---------~~~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 52 VQNELVKED-EWIIDGNYGGTMDIRL---------NAADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred HHHHHhcCC-CEEEeCCcchHHHHHH---------HhCCEEEEEeCCHHHHHHHHHHHH
Confidence 334444433 3455543222222111 123458999999999999999886
No 49
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.87 E-value=1.7e-08 Score=88.64 Aligned_cols=128 Identities=14% Similarity=0.116 Sum_probs=71.3
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEE--eCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEII--NSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiI--s~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
.++|+++|++||||||+|..|++.++...+ +.|.+... ++ ........++...- +.....+... ..++..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~--~~----~~~~~~~~~~~~~~-~~~~~~~~~~-~~~y~~ 73 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA--LP----LKCQDAEGGIEFDG-DGGVSPGPEF-RLLEGA 73 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh--cC----hhhcccccccccCc-cCCcccchHH-HHHHHH
Confidence 469999999999999999999999876544 66654321 11 00000001111000 0000011111 123333
Q ss_pred HHHHHHHHHhCCCCeEEEcCchH-H--HHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSS-Y--IKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~-Y--~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
....+..+.+.|.. ||+..+.. + ++..+. .+ ...++.++||+++.+++.+|+.+|.+.
T Consensus 74 ~~~~~~~~l~~G~~-VIvD~~~~~~~~~r~~~~----~~-~~~~~~~v~l~~~~~~l~~R~~~R~~~ 134 (175)
T cd00227 74 WYEAVAAMARAGAN-VIADDVFLGRAALQDCWR----SF-VGLDVLWVGVRCPGEVAEGRETARGDR 134 (175)
T ss_pred HHHHHHHHHhCCCc-EEEeeeccCCHHHHHHHH----Hh-cCCCEEEEEEECCHHHHHHHHHhcCCc
Confidence 44456667777876 45554432 1 111111 01 124678999999999999999999755
No 50
>PRK07261 topology modulation protein; Provisional
Probab=98.85 E-value=1.8e-08 Score=88.72 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=66.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
.|+|+|++||||||||..|++.++.++++.|.++...+. .+.+..+|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~--------------------------~~~~~~~~~~~~--- 52 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW--------------------------QERDDDDMIADI--- 52 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc--------------------------ccCCHHHHHHHH---
Confidence 489999999999999999999999999999987642211 011223454443
Q ss_pred HHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 114 IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.++..++. .|+.|+. ...+... ..... ..++||++|..+...|+-+|.
T Consensus 53 -~~~~~~~~--wIidg~~--~~~~~~~----~l~~a-d~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 53 -SNFLLKHD--WIIDGNY--SWCLYEE----RMQEA-DQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred -HHHHhCCC--EEEcCcc--hhhhHHH----HHHHC-CEEEEEcCCHHHHHHHHHHHH
Confidence 34444444 6777754 3222111 11123 358999999999999998885
No 51
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.84 E-value=7.4e-09 Score=84.69 Aligned_cols=33 Identities=39% Similarity=0.670 Sum_probs=31.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+|+|+|++||||||+|..||+++|..+|+.|.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecce
Confidence 589999999999999999999999999999983
No 52
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.84 E-value=1.4e-08 Score=89.04 Aligned_cols=123 Identities=12% Similarity=0.190 Sum_probs=68.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
.++|+|+||+||||||++..|++.+|...+++|.+-. +.+...+ + ... .+.. ++............+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~-~~~~~~~--~-~~~--~~~~----~~~~~~~~~~~~~~~~l~ 72 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR-AEVASGS--E-RGK--QLQA----IMESGDLVPLDTVLDLLK 72 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH-HHHhcCC--H-HHH--HHHH----HHHCCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999976421 1221111 1 100 0000 000001111222223333
Q ss_pred HHHHHHHhCCCCeEEEcCchHH---HHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 112 LAIESILSRDRLPIIAGGSSSY---IKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~Y---~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
..+......++. +|+.|.... .+.+.. ....+..+|||+++.+++.+|+..|-
T Consensus 73 ~~~~~~~~~~~~-~i~dg~~~~~~q~~~~~~------~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (188)
T TIGR01360 73 DAMVAALGTSKG-FLIDGYPREVKQGEEFER------RIGPPTLVLYFDCSEDTMVKRLLKRA 128 (188)
T ss_pred HHHHcccCcCCe-EEEeCCCCCHHHHHHHHH------cCCCCCEEEEEECCHHHHHHHHHccc
Confidence 333333344544 566664311 111111 01224578999999999999999884
No 53
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.83 E-value=1.7e-08 Score=93.67 Aligned_cols=125 Identities=18% Similarity=0.316 Sum_probs=73.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
+|+++|++||||||+|..|++.++ ..+++.|.++... + ..+ ..+ ...+.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~--~--------------------~~~--~~~-e~~~~~ 55 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESF--P--------------------VWK--EKY-EEFIRD 55 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHh--H--------------------Hhh--HHh-HHHHHH
Confidence 589999999999999999999873 3455556543110 0 000 001 122333
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchHHHH---HHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHh
Q 020362 109 HASLAIESILSRDRLPIIAGGSSSYIK---ALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQ 185 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~Y~~---all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~ 185 (327)
.....++...++|.. ||++|+++|.. .+..- ......++++|||++|.+++.+|...|-+ ......++++..
T Consensus 56 ~~~~~i~~~l~~~~~-VI~D~~~~~~~~r~~l~~~---ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-~~~~~~i~~l~~ 130 (249)
T TIGR03574 56 STLYLIKTALKNKYS-VIVDDTNYYNSMRRDLINI---AKEYNKNYIIIYLKAPLDTLLRRNIERGE-KIPNEVIKDMYE 130 (249)
T ss_pred HHHHHHHHHHhCCCe-EEEeccchHHHHHHHHHHH---HHhCCCCEEEEEecCCHHHHHHHHHhCCC-CCCHHHHHHHHH
Confidence 334456666666665 66666664421 12110 01123567899999999999999998854 333444555544
Q ss_pred hhc
Q 020362 186 MFD 188 (327)
Q Consensus 186 l~~ 188 (327)
-++
T Consensus 131 r~e 133 (249)
T TIGR03574 131 KFD 133 (249)
T ss_pred hhC
Confidence 443
No 54
>PRK03839 putative kinase; Provisional
Probab=98.82 E-value=1.6e-08 Score=88.99 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=61.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
.|+|+|++||||||++..||++++..+|++|.+..-. .++. ..+. .....|+......
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~--~~~~-----------------~~~~---~~~~~~~~l~~~~ 59 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK--GIGE-----------------EKDD---EMEIDFDKLAYFI 59 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc--CCcc-----------------cCCh---hhhcCHHHHHHHH
Confidence 5899999999999999999999999999999753211 1110 0000 0112244444433
Q ss_pred HHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 114 IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.+. . .++. +|+.|.. ..+. . ...++||+++.+++.+|+..|-
T Consensus 60 ~~~-~-~~~~-vIidG~~---~~l~---------~-~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 60 EEE-F-KEKN-VVLDGHL---SHLL---------P-VDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred HHh-c-cCCC-EEEEecc---cccc---------C-CCEEEEEECCHHHHHHHHHHcC
Confidence 332 2 2333 4555521 1111 1 2347899999999999998874
No 55
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.82 E-value=9.9e-09 Score=104.54 Aligned_cols=129 Identities=17% Similarity=0.266 Sum_probs=83.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
.|+|+|++||||||++..||+.+|..+|++|..-.- ..|.+ +-+....+....|++...+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~--------------~~g~~-----i~~i~~~~Ge~~fr~~E~~~ 62 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER--------------REGRS-----VRRIFEEDGEEYFRLKEKEL 62 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH--------------HcCCC-----HHHHHHHhhhHHHHHHHHHH
Confidence 489999999999999999999999999999976321 11111 00111235567788888888
Q ss_pred HHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcC
Q 020362 114 IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDP 189 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~ 189 (327)
++++.......|-+||... ++.--. ..++ ...+|||+++.+++.+|+..|-..++..+ .++++++++.
T Consensus 63 l~~l~~~~~~Vis~Gggvv-~~~~~r---~~l~---~~~vI~L~as~e~l~~Rl~~~~RPLl~~~-~e~l~~L~~~ 130 (488)
T PRK13951 63 LRELVERDNVVVATGGGVV-IDPENR---ELLK---KEKTLFLYAPPEVLMERVTTENRPLLREG-KERIREIWER 130 (488)
T ss_pred HHHHhhcCCEEEECCCccc-cChHHH---HHHh---cCeEEEEECCHHHHHHHhccCCCCCcccc-HHHHHHHHHH
Confidence 8888655554344565321 111000 0111 12489999999999999987743334333 5677777764
No 56
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.81 E-value=2e-08 Score=88.12 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=66.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
+|+|+||+||||||+|..||+++|...||+|.+- .+.+.-.+ ...+. + -+.++..+.+......++..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~l-r~~~~~~~---~~~~~--~----~~~~~~g~~~~~~~~~~ll~~~ 70 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLL-RAEIKSGS---ENGEL--I----ESMIKNGKIVPSEVTVKLLKNA 70 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHH-HHHHhcCC---hHHHH--H----HHHHHCCCcCCHHHHHHHHHHH
Confidence 5899999999999999999999999999985432 11111111 11110 0 0111111122223333333333
Q ss_pred HHHHHhCCCCeEEEcCchH---HHHH---HHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 114 IESILSRDRLPIIAGGSSS---YIKA---LVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~---Y~~a---ll~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+.. .++..+|+.|... ..+. ++.. ... ...+|+|++|.+++.+|+..|.
T Consensus 71 ~~~---~~~~~~vlDg~p~~~~q~~~~~~~~~~-----~~~-~d~~i~l~~~~~~~~~Rl~~R~ 125 (183)
T TIGR01359 71 IQA---DGSKKFLIDGFPRNEENLEAWEKLMDN-----KVN-FKFVLFFDCPEEVMIKRLLKRG 125 (183)
T ss_pred Hhc---cCCCcEEEeCCCCCHHHHHHHHHHHhc-----CCC-CCEEEEEECCHHHHHHHHhcCC
Confidence 322 1234567777532 1111 1110 012 2358999999999999999994
No 57
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.80 E-value=2.4e-08 Score=86.22 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=67.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc----hhcCcccccCCCChhhhcCccceeccccCCCcccCHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ----VYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATD 105 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q----vy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~ 105 (327)
+..+.|+|+|.+|+||||++.+||+.+|.+.|+.-.+- +|.|.| +.|.-..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyD-------------------------E~y~c~i 59 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYD-------------------------EEYKCHI 59 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhccc-------------------------ccccCcc
Confidence 34578999999999999999999999999999854332 333322 1122122
Q ss_pred HHHH-HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 106 FRNH-ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 106 f~~~-a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+.++ ..+.++.....|+..|=-=|.++ |..++..+++.|.+|..+|++||..|.
T Consensus 60 ~DEdkv~D~Le~~m~~Gg~IVDyHgCd~------------FperwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 60 LDEDKVLDELEPLMIEGGNIVDYHGCDF------------FPERWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeecccCc------------cchhheeEEEEEecCchHHHHHHHHcC
Confidence 2211 22334554545654222233333 234455678889999999999999996
No 58
>PRK06547 hypothetical protein; Provisional
Probab=98.80 E-value=5.5e-08 Score=86.07 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
..+.+|+|.|++||||||+|..|++.++..+++.|.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~ 49 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDL 49 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccce
Confidence 4567999999999999999999999999999999985
No 59
>PRK14531 adenylate kinase; Provisional
Probab=98.78 E-value=3.2e-08 Score=87.74 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=31.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+..|+|+||+||||||+|..||+.+|...||++.+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~ 36 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDL 36 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccH
Confidence 34699999999999999999999999999998554
No 60
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.77 E-value=1.1e-08 Score=89.78 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=62.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCe----EEeCCccchhcCcccccCCCChhhhcCccceeccccCCCc-----cc--
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAE----IINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA-----NF-- 101 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~e----iIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~-----~~-- 101 (327)
.+++|+||+|||||||+..|+..++.. ++.+ ..|+++. ..|..++.++.-.... .|
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~----------~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRR----------VITRPAS---AGGENHIALSTEEFDHREDGGAFAL 68 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeE----------EcccCCC---CCCccccccCHHHHHHHHHCCCEEE
Confidence 479999999999999999999987531 2111 1122211 1122222111000000 00
Q ss_pred ---CHHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhh
Q 020362 102 ---TATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVD 172 (327)
Q Consensus 102 ---s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~ 172 (327)
....|..... .+....+.|..+|+.| ++.++..+... ..+..+|||+++.+++.+||..|-.
T Consensus 69 ~~~~~~~~~g~~~-~i~~~~~~g~~vv~~g-~~~~~~~~~~~-------~~~~~~i~l~~~~~~~~~Rl~~R~~ 133 (179)
T TIGR02322 69 SWQAHGLSYGIPA-EIDQWLEAGDVVVVNG-SRAVLPEARQR-------YPNLLVVNITASPDVLAQRLAARGR 133 (179)
T ss_pred EEeecCccccChH-HHHHHHhcCCEEEEEC-CHHHHHHHHHH-------CCCcEEEEEECCHHHHHHHHHHcCC
Confidence 0000111111 2344455666544444 45555433221 1246789999999999999998843
No 61
>PRK08233 hypothetical protein; Provisional
Probab=98.76 E-value=6.5e-08 Score=84.38 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=64.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC-CeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP-AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~-~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
++.+|+|+|++||||||||..|++.++ ..++..|..... .. ..+.....+.... . +.+....+.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~----~~-----~~~~~~~~~~~~~---~-~~~~~~~~~-- 66 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFD----NC-----PEDICKWIDKGAN---Y-SEWVLTPLI-- 66 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcc----cC-----chhhhhhhhccCC---h-hhhhhHHHH--
Confidence 357999999999999999999999996 557767765311 00 0010000000000 0 112223332
Q ss_pred HHHHHHHHHhCCCCe-EEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 110 ASLAIESILSRDRLP-IIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 110 a~~~i~~i~~~gk~p-IvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+.+....+....+ ||++|...+.. .+....+ ...|||++|.+++.+|+.+|-
T Consensus 67 --~~l~~~~~~~~~~~vivd~~~~~~~-------~~~~~~~-d~~i~l~~~~~~~~~R~~~R~ 119 (182)
T PRK08233 67 --KDIQELIAKSNVDYIIVDYPFAYLN-------SEMRQFI-DVTIFIDTPLDIAMARRILRD 119 (182)
T ss_pred --HHHHHHHcCCCceEEEEeeehhhcc-------HHHHHHc-CEEEEEcCCHHHHHHHHHHHH
Confidence 3344444444333 45566332211 1122223 368999999999888877774
No 62
>PLN02772 guanylate kinase
Probab=98.73 E-value=1.7e-08 Score=99.72 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=82.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCH-------
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTA------- 103 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~------- 103 (327)
..++|+|+||+|+|||||...|.+.+... +......+|++|.+.|..|+.+|+.+.-........
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~--------~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~ 205 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFA 205 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcccc--------ccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceee
Confidence 45799999999999999999999876421 122457789999999999988888753222111111
Q ss_pred ---HHHHHHHHHHHHHHHhCCCCeEEE---cCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 104 ---TDFRNHASLAIESILSRDRLPIIA---GGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 104 ---~~f~~~a~~~i~~i~~~gk~pIvv---GGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+.|+-...+.++.+.++|+.+|+. .|.....+..+ ....++.+.++.++|.+||..|-
T Consensus 206 e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l----------~~v~IFI~PPSlEeLe~RL~~RG 269 (398)
T PLN02772 206 SVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSL----------EAIFIFICPPSMEELEKRLRARG 269 (398)
T ss_pred eecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcC----------CeEEEEEeCCCHHHHHHHHHhcC
Confidence 234444467788888899988764 22111111110 12445556778899999998884
No 63
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.73 E-value=6e-08 Score=87.09 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=32.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC-CCeEEeCCccch
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF-PAEIINSDKMQV 68 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~Ds~qv 68 (327)
+|+|.|++||||||+|..|++.+ +..+|+.|.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 58999999999999999999999 689999998754
No 64
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.71 E-value=1.4e-07 Score=85.26 Aligned_cols=132 Identities=9% Similarity=0.124 Sum_probs=73.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe-EEeCCccc-hhcCcccccCCCChhhhcCccceeccccCCCc-ccCHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE-IINSDKMQ-VYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA-NFTATDFR 107 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e-iIs~Ds~q-vy~gldI~Takp~~~E~~gvphhlid~~~~~~-~~s~~~f~ 107 (327)
.+.+|+|+|++||||||+|..||+++|.. ++++|.++ .-++. +... |....- .+.-...+++.. +.-...|.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~-~~~~-p~l~~s---~~~a~~~~~~~~~~~~~~~y~ 76 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPY-VDDE-PVLAKS---VYDAWEFYGSMTDENIVKGYL 76 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHh-cCCC-CCcccc---cHHHHHHcCCcchhHHHHHHH
Confidence 46799999999999999999999999875 67788776 22322 1111 222110 000001122211 22234455
Q ss_pred HHHH-------HHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEe-CCHHHHHHHhhhhhhhh
Q 020362 108 NHAS-------LAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVD-VSLPVLHSFVSERVDRM 174 (327)
Q Consensus 108 ~~a~-------~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~-~~~e~L~~RL~~Rv~~M 174 (327)
..+. ..++.+..+|. ++|+.|+++.-..+ .. .... ...++++. .+.+.+.+|+..|...+
T Consensus 77 ~q~~~v~~~L~~va~~~l~~G~-sVIvEgv~l~p~~~-~~---~~~~--~v~~i~l~v~d~e~lr~Rl~~R~~~~ 144 (197)
T PRK12339 77 DQARAIMPGINRVIRRALLNGE-DLVIESLYFHPPMI-DE---NRTN--NIRAFYLYIRDAELHRSRLADRINYT 144 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CEEEEecCcCHHHH-HH---HHhc--CeEEEEEEeCCHHHHHHHHHHHhhcc
Confidence 4443 23444555555 57777777543222 10 0111 23344444 47889999999998544
No 65
>PRK14527 adenylate kinase; Provisional
Probab=98.71 E-value=3.9e-08 Score=87.59 Aligned_cols=39 Identities=28% Similarity=0.466 Sum_probs=35.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+++++|+|+||+||||||+|..||++++...++.|.+-
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~ 41 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDIL 41 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHH
Confidence 356789999999999999999999999999999987653
No 66
>PRK14530 adenylate kinase; Provisional
Probab=98.71 E-value=1.4e-07 Score=85.75 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=32.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+.|+|+||+||||||+|..||+++|...|++|.+-
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~l 38 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDAL 38 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHH
Confidence 347999999999999999999999999999987764
No 67
>PRK14532 adenylate kinase; Provisional
Probab=98.69 E-value=9.1e-08 Score=84.67 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=31.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.|+|+||+||||||+|..||+++|..+|++|.+-
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHH
Confidence 4889999999999999999999999999997653
No 68
>PRK04182 cytidylate kinase; Provisional
Probab=98.69 E-value=6.1e-08 Score=84.29 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=30.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
+|+|+|++||||||+|..||+++|.+++++|.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~ 33 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHH
Confidence 69999999999999999999999999999764
No 69
>PLN02200 adenylate kinase family protein
Probab=98.69 E-value=8.4e-08 Score=88.88 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=68.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
..+.+|+|+|++||||||+|..||+++|...|+++.+-- +.+...| .... ++.+.++-...+........
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR-~~i~~~s----~~~~-----~i~~~~~~G~~vp~e~~~~~ 110 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLR-REIASNS----EHGA-----MILNTIKEGKIVPSEVTVKL 110 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHH-HHHhccC----hhHH-----HHHHHHHcCCCCcHHHHHHH
Confidence 346789999999999999999999999999999866532 1111111 0000 01111111111222222333
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHH-HHH-HcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYI-KAL-VNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~-~al-l~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
..+.+.. .....+|++|...-. ++. +. +.....+..+|+|+++.+++.+|+..|-
T Consensus 111 l~~~l~~---~~~~~~ILDG~Prt~~q~~~l~----~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 111 IQKEMES---SDNNKFLIDGFPRTEENRIAFE----RIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred HHHHHhc---CCCCeEEecCCcccHHHHHHHH----HHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 3333332 122346777743211 111 10 0111124468999999999999999884
No 70
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.67 E-value=1e-07 Score=97.85 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=74.4
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
...++.+|+++|++||||||+|..+++..++.+||.|.+.- |.
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~-------------------------------------~~ 407 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS-------------------------------------TQ 407 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH-------------------------------------HH
Confidence 34568899999999999999999999999999999996410 11
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCchHHH---HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 108 NHASLAIESILSRDRLPIIAGGSSSYI---KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~~Y~---~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.+...+++.+++|+ +||++.|+... +.++. -.-...+++.++|+++|.+++.+|+..|.
T Consensus 408 -~~~~~a~~~L~~G~-sVVIDaTn~~~~~R~~~i~---lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~ 469 (526)
T TIGR01663 408 -NCLTACERALDQGK-RCAIDNTNPDAASRAKFLQ---CARAAGIPCRCFLFNAPLAQAKHNIAFRE 469 (526)
T ss_pred -HHHHHHHHHHhCCC-cEEEECCCCCHHHHHHHHH---HHHHcCCeEEEEEeCCCHHHHHHHHHhhc
Confidence 12233455566676 57888888543 22221 01233567889999999999999999995
No 71
>COG0645 Predicted kinase [General function prediction only]
Probab=98.66 E-value=2.8e-07 Score=81.12 Aligned_cols=126 Identities=23% Similarity=0.269 Sum_probs=81.7
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc-hhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ-VYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q-vy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
.++++.|.+||||||||..|++.+|+..|.+|... -..|.+..+..| -+.+++. .+...|..+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~------------~g~ys~~--~~~~vy~~l~~ 67 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGP------------AGLYSPA--ATAAVYDELLG 67 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCC------------CCCCcHH--HHHHHHHHHHH
Confidence 57899999999999999999999999999999876 222333333222 2334443 56677776665
Q ss_pred HHHHHHHhCCCCeEEEcCchHH--HHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhh
Q 020362 112 LAIESILSRDRLPIIAGGSSSY--IKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVE 176 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~Y--~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~ 176 (327)
.+ ..++..|.. ||.+++.-- -+++... ..-....++..|++.++.+++.+|+..|...--+
T Consensus 68 ~A-~l~l~~G~~-VVlDa~~~r~~~R~~~~~--~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sD 130 (170)
T COG0645 68 RA-ELLLSSGHS-VVLDATFDRPQERALARA--LARDVGVAFVLIRLEAPEEVLRGRLAARKGDASD 130 (170)
T ss_pred HH-HHHHhCCCc-EEEecccCCHHHHHHHHH--HHhccCCceEEEEcCCcHHHHHHHHHHhCCCccc
Confidence 54 445666765 555554310 0011100 0011234677899999999999999999873333
No 72
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.66 E-value=1.9e-07 Score=84.17 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=34.4
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCC---CeEEeCCccc
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFP---AEIINSDKMQ 67 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~---~eiIs~Ds~q 67 (327)
|+.++.+|.|+|++|||||||+..|++.++ ..+|+.|.+.
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 456788999999999999999999999983 4678999864
No 73
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.65 E-value=9.8e-08 Score=80.13 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=63.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
+|+|+|++||||||+|..||+.+|.++++.|.+- .++....... ..+...+.+...+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~-------------~e~~~~~~~~---------~~~~~~i~~~l~~~ 58 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIR-------------TEEVGKLASE---------VAAIPEVRKALDER 58 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCC-------------HHHHHHHHHH---------hcccHhHHHHHHHH
Confidence 5899999999999999999999999999998321 1111110000 00112344444455
Q ss_pred HHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 114 IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+.++...+ . +|+.|... ..++. . .....|||++|++...+|+.+|.
T Consensus 59 ~~~~~~~~-~-~Vidg~~~--~~~~~-------~-~~~~~i~l~~~~~~r~~R~~~r~ 104 (147)
T cd02020 59 QRELAKKP-G-IVLEGRDI--GTVVF-------P-DADLKIFLTASPEVRAKRRAKQL 104 (147)
T ss_pred HHHHhhCC-C-EEEEeeee--eeEEc-------C-CCCEEEEEECCHHHHHHHHHHHH
Confidence 55554433 3 44445331 00110 1 12467999999999999998864
No 74
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.61 E-value=6.3e-07 Score=90.32 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=80.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe-EEeCCcc-chhcCcccccC-CCChhhhcCccceeccccC-C-----Ccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE-IINSDKM-QVYKGLDIVTN-KVTEEECHGVPHHLLGIIE-P-----NAN 100 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e-iIs~Ds~-qvy~gldI~Ta-kp~~~E~~gvphhlid~~~-~-----~~~ 100 (327)
..|.+|+|+|++||||||+|..||.++|.. +|++|.+ ++++++- ... -|+... ..|+-...++ + ...
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i-~~e~~P~Lh~---Sty~A~~~~~~~~~~~~~~~ 328 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMV-SKDLLPTLHA---STFNAWRALLPPGEGLPAEP 328 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhc-chhhccchhh---chhhHHhhccCccccccccc
Confidence 358899999999999999999999999987 8899996 5787751 110 011100 0011111110 1 111
Q ss_pred c---CHHHHHHHHHHH-------HHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEe-CCHHHHHHHhhh
Q 020362 101 F---TATDFRNHASLA-------IESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVD-VSLPVLHSFVSE 169 (327)
Q Consensus 101 ~---s~~~f~~~a~~~-------i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~-~~~e~L~~RL~~ 169 (327)
+ -...|...|... ++....+|. .||+.|.+++..-+ .. .......++.|.|. .+.+...+|+..
T Consensus 329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~-SvIIEGVHl~P~~i-~~---~~~~~~~~i~flv~isdeeeH~~Rf~~ 403 (475)
T PRK12337 329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGT-SLVLEGVHLVPGYL-RH---PYQAGALVVPMLVTLPDEALHRRRFEL 403 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-eEEEECCCCCHHHH-HH---HHhcCCceEEEEEEECCHHHHHHHHHH
Confidence 2 235566665443 444455555 57778888654322 11 11222234434444 466788889999
Q ss_pred hhhhhh
Q 020362 170 RVDRMV 175 (327)
Q Consensus 170 Rv~~Ml 175 (327)
|...|-
T Consensus 404 Ra~~~~ 409 (475)
T PRK12337 404 RDRETG 409 (475)
T ss_pred Hhhhcc
Confidence 987764
No 75
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.61 E-value=1.8e-07 Score=84.61 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=66.8
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHHH
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLAI 114 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~i 114 (327)
|+|+||+||||||+|..||+++|...|++|.+- .+.+.-.| ..... ..+.++......-....+.....+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdll-r~~~~~~~---~~~~~------~~~~~~~g~~vp~~~~~~l~~~~i 71 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLL-RAEIKAGT---PLGKK------AKEYMEKGELVPDEIVNQLVKERL 71 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHH-HHhhcccc---HHHHH------HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999997643 11111111 00000 001111111122233444444444
Q ss_pred HHHHhCCCCeEEEcCchH-HH--HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 115 ESILSRDRLPIIAGGSSS-YI--KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 115 ~~i~~~gk~pIvvGGT~~-Y~--~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.+....++ .+|++|... .- +.+.. ........+|+|++|.+++.+|+..|.
T Consensus 72 ~~~~~~~~-~~ilDGfPrt~~Qa~~l~~-----~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 72 TQNQDNEN-GFILDGFPRTLSQAEALDA-----LLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred hcCcccCC-cEEEeCCCCCHHHHHHHHH-----HhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 33211123 366666432 21 11111 001023578999999999999999985
No 76
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.61 E-value=3.9e-07 Score=81.82 Aligned_cols=123 Identities=24% Similarity=0.370 Sum_probs=70.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCc--ccCH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF---PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA--NFTA 103 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~--~~s~ 103 (327)
...|.++++.|++|||||+++..+...+ +..+|+.|.+.-+- |...+... . ++.+ ..+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~--------p~~~~~~~-------~-~~~~~~~~~~ 75 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH--------PDYDELLK-------A-DPDEASELTQ 75 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS--------TTHHHHHH-------H-HCCCTHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc--------cchhhhhh-------h-hhhhhHHHHH
Confidence 3578999999999999999999999987 67789999876432 22222111 0 1111 1222
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhh-cccceEEEEEeCCHHHHHHHhhhhhh
Q 020362 104 TDFRNHASLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQ-LRYECFFLWVDVSLPVLHSFVSERVD 172 (327)
Q Consensus 104 ~~f~~~a~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~-~~~~~~~i~L~~~~e~L~~RL~~Rv~ 172 (327)
.+-...+...++.+..++. .||+.||.. +...+++ .++ ..|.+.++++.+++++-..|+..|..
T Consensus 76 ~~a~~~~~~~~~~a~~~~~-nii~E~tl~~~~~~~~~~~----~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 76 KEASRLAEKLIEYAIENRY-NIIFEGTLSNPSKLRKLIR----EAKAAGYKVELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp HHHHHHHHHHHHHHHHCT---EEEE--TTSSHHHHHHHH----HHHCTT-EEEEEEE---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CEEEecCCCChhHHHHHHH----HHHcCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 3333445556666666555 577777763 3333333 222 46788889999999999999999974
No 77
>PRK08356 hypothetical protein; Provisional
Probab=98.61 E-value=4.2e-07 Score=81.40 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
...+|+|+||+||||||+|..|+ .+|..+|++...
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~ 38 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDP 38 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCc
Confidence 34689999999999999999996 589989987754
No 78
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.60 E-value=2.5e-07 Score=81.61 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=30.5
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
|+|+|++||||||+|..||+++|..+|++|.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence 89999999999999999999999999999875
No 79
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.59 E-value=2.1e-07 Score=80.40 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=30.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+|+|+|++||||||+|..|++.+|.++++.|..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~ 34 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDI 34 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHH
Confidence 699999999999999999999999999998753
No 80
>PRK06696 uridine kinase; Validated
Probab=98.58 E-value=4.4e-08 Score=89.60 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC---CCeE--EeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF---PAEI--INSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~---~~ei--Is~Ds~q 67 (327)
..+.+|+|.|++||||||||..|++.+ |..+ ++.|.+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 457899999999999999999999998 4444 5588865
No 81
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.57 E-value=1.3e-07 Score=85.89 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=33.6
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
|.+.+.+|+|+|++||||||++..|+. +|+.++++|.+
T Consensus 1 ~~~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i 38 (208)
T PRK14731 1 MRSLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRV 38 (208)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHH
Confidence 455678999999999999999999996 89999999954
No 82
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.56 E-value=8.5e-07 Score=77.65 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=62.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTAT 104 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~ 104 (327)
.++.+|+|+|++||||||+|..|+..+. ..+|++|.++ +++.. ++. +.+. -...
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~--~~~~~-----------~~~------~~~~--~r~~ 60 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR--TNLSK-----------GLG------FSKE--DRDT 60 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH--HHHhc-----------CCC------CChh--hHHH
Confidence 3467999999999999999999998872 4567888654 22211 000 0011 0112
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhh-cccceEEEEEeCCHHHHHHHh
Q 020362 105 DFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQ-LRYECFFLWVDVSLPVLHSFV 167 (327)
Q Consensus 105 ~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~-~~~~~~~i~L~~~~e~L~~RL 167 (327)
.+...+ ...+.+...|. .|+++++..|.+ ..+ .++ ....+.++||++|.+++.+|.
T Consensus 61 ~~~~~~-~~a~~~~~~g~-~vi~~~~~~~~~-~~~----~l~~~~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 61 NIRRIG-FVANLLTRHGV-IVLVSAISPYRE-TRE----EVRANIGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHHHHH-HHHHHHHhCCC-EEEEecCCCCHH-HHH----HHHhhcCCeEEEEEcCCHHHHHHhC
Confidence 233322 22222333444 566766644421 111 111 112467899999999999994
No 83
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.56 E-value=6.1e-07 Score=80.53 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=31.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.+|+|+|++||||||++..|++ +|..+|++|.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence 5899999999999999999998 99999999986
No 84
>PRK01184 hypothetical protein; Provisional
Probab=98.56 E-value=2.7e-07 Score=81.36 Aligned_cols=120 Identities=13% Similarity=0.212 Sum_probs=65.7
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeC-Cccch-hcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINS-DKMQV-YKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~-Ds~qv-y~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
++|+|+|++||||||++. +++++|..++++ |.++- +.+-. . .+..++. |-. ..+. .+.+....+...+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~--~-~~~~~~~-g~~--~~~~---~~~~~~~~~~~~~ 71 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRG--L-EPTDENI-GKV--AIDL---RKELGMDAVAKRT 71 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcC--C-CCCcHHH-HHH--HHHH---HHHHChHHHHHHH
Confidence 489999999999999986 899999999997 44442 11100 0 0001110 000 0000 0112223333333
Q ss_pred HHHHHHHHhCCCCeEEEcCchHH--HHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 111 SLAIESILSRDRLPIIAGGSSSY--IKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y--~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.. .+.+.+...||+.|.... ++.+..- ....+.++++++|.+++.+|+..|-
T Consensus 72 ~~---~i~~~~~~~vvidg~r~~~e~~~~~~~------~~~~~~~i~v~~~~~~~~~Rl~~R~ 125 (184)
T PRK01184 72 VP---KIREKGDEVVVIDGVRGDAEVEYFRKE------FPEDFILIAIHAPPEVRFERLKKRG 125 (184)
T ss_pred HH---HHHhcCCCcEEEeCCCCHHHHHHHHHh------CCcccEEEEEECCHHHHHHHHHHcC
Confidence 33 333345556778775321 1111100 0113468999999999999998884
No 85
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=2.1e-06 Score=80.12 Aligned_cols=138 Identities=21% Similarity=0.278 Sum_probs=77.6
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCe-EEeCCccc-hhcCccccc--CCCChhhhcCccceeccccCCCccc-CH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAE-IINSDKMQ-VYKGLDIVT--NKVTEEECHGVPHHLLGIIEPNANF-TA 103 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~e-iIs~Ds~q-vy~gldI~T--akp~~~E~~gvphhlid~~~~~~~~-s~ 103 (327)
++.|.+|+|-|+||+||||+|-+||.++|.. +|++|+++ +-|++ .+ --|+..+-.--.+ --..++..+- -.
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~i--i~~~l~PtLh~Ssy~Aw--kalr~~~~~~pii 161 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKI--ISPELLPTLHTSSYDAW--KALRDPTDENPII 161 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHh--CCHHhcchhhHhHHHHH--HHhcCCCCCcchh
Confidence 3457899999999999999999999999964 89999998 55543 22 1122221100000 0001121111 34
Q ss_pred HHHHHHHH-------HHHHHHHhCCCCeEEEcCchHHHHHHHcCC-chhhhcccceE-EEEEeCCHHHHHHHhhhhhhhh
Q 020362 104 TDFRNHAS-------LAIESILSRDRLPIIAGGSSSYIKALVNGD-AAEFQLRYECF-FLWVDVSLPVLHSFVSERVDRM 174 (327)
Q Consensus 104 ~~f~~~a~-------~~i~~i~~~gk~pIvvGGT~~Y~~all~~~-~~~~~~~~~~~-~i~L~~~~e~L~~RL~~Rv~~M 174 (327)
+-|.+.+. ..|+.....|.-.|| .|.++ +-|+ +++.. ..+.. ++..-.|.++.+.|..+|...+
T Consensus 162 aGF~dqa~~V~~GI~~VI~RAi~eG~~lII-EGvHl-----VPg~i~~~~~-~~n~~~~~l~i~dee~Hr~RF~~R~~~t 234 (299)
T COG2074 162 AGFEDQASAVMVGIEAVIERAIEEGEDLII-EGVHL-----VPGLIKEEAL-GNNVFMFMLYIADEELHRERFYDRIRYT 234 (299)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHhcCcceEE-Eeeee-----ccccccHhhh-ccceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 56766664 334444455555444 44443 2221 01111 22233 3344567788888999998877
Q ss_pred hhc
Q 020362 175 VEL 177 (327)
Q Consensus 175 l~~ 177 (327)
-..
T Consensus 235 ~~~ 237 (299)
T COG2074 235 HAS 237 (299)
T ss_pred hcc
Confidence 443
No 86
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.54 E-value=3.8e-07 Score=83.66 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=32.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+.+|.|.||+||||||++..||++++..++++|.+
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~ 36 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAM 36 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchH
Confidence 46899999999999999999999999999998875
No 87
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.53 E-value=1e-07 Score=77.92 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=21.2
Q ss_pred EEEEcCCcccHHHHHHHHHHhC
Q 020362 35 VFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~ 56 (327)
|+|.|+|||||||+|..|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 88
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.53 E-value=6e-07 Score=91.87 Aligned_cols=41 Identities=20% Similarity=0.504 Sum_probs=36.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGL 72 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gl 72 (327)
.++.+|.|.||+||||||+|..||+++|..++++|.+ ||.+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~--YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM--YRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce--ehHH
Confidence 3678999999999999999999999999999999985 6654
No 89
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.52 E-value=7.2e-07 Score=82.51 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=70.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
.|+|+||+||||||+|..||+.+|..+|++|.+-.. .+.-.| +..+. +..+++...-..-....+.....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~-~~~~~t---~lg~~------i~~~~~~G~lvpd~iv~~lv~~~ 77 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMGNILRE-EIKAKT---TIGKE------IQKVVTSGNLVPDNLVIAIVKDE 77 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHH-HhhcCC---hHHHH------HHHHHHcCCcCCHHHHHHHHHHH
Confidence 499999999999999999999999999999987522 111111 11110 01111111112223344455555
Q ss_pred HHHHHhCCCCeEEEcCch-HHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 114 IESILSRDRLPIIAGGSS-SYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~-~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+..+.......+|..|.. ..-++..-. .. .+ ...+++|+++.+++.+|+..|.
T Consensus 78 l~~~~~~~~~g~iLDGfPRt~~Qa~~l~---~~-~~-~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 78 IAKVTDDCFKGFILDGFPRNLKQCKELG---KI-TN-IDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HHhhccccCceEEEecCCCCHHHHHHHH---hc-CC-CCEEEEEeCCHHHHHHHHHcCc
Confidence 544322223346666642 222222110 00 12 3468999999999999998884
No 90
>PTZ00301 uridine kinase; Provisional
Probab=98.51 E-value=3.5e-07 Score=83.57 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC----C---CeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF----P---AEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~----~---~eiIs~Ds~q 67 (327)
+..+|.|.|+|||||||||..|++++ + ..+++.|.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 34799999999999999999998765 2 3478889854
No 91
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.51 E-value=1.7e-07 Score=85.80 Aligned_cols=51 Identities=25% Similarity=0.451 Sum_probs=39.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCe---EEeCCccchhcCcccccCCCChhhhcCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAE---IINSDKMQVYKGLDIVTNKVTEEECHGVP 88 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~e---iIs~Ds~qvy~gldI~Takp~~~E~~gvp 88 (327)
.-+|.|.|++||||||+|..|...|+.+ +|+-|++ |+.- .+.+.+|+..+.
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y--Yk~~----~~~~~~~~~~~n 61 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY--YKDQ----SHLPFEERNKIN 61 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc--ccch----hhcCHhhcCCcC
Confidence 3689999999999999999999999977 9999985 5532 344455555443
No 92
>PRK07667 uridine kinase; Provisional
Probab=98.49 E-value=1.3e-07 Score=84.74 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~ 66 (327)
....+|.|.|++||||||+|..|++.++ ..+++.|.+
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 3457999999999999999999999763 459999985
No 93
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.49 E-value=5.6e-07 Score=81.68 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=30.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.|+|+||+||||||+|..||+++|...|+++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCcc
Confidence 489999999999999999999999999998664
No 94
>PRK14528 adenylate kinase; Provisional
Probab=98.48 E-value=5.4e-07 Score=80.36 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=31.9
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+.|+|+||+||||||+|..|++.+|..+|++|.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~ 35 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDI 35 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHH
Confidence 4689999999999999999999999999999986
No 95
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.48 E-value=1.5e-06 Score=77.96 Aligned_cols=41 Identities=24% Similarity=0.472 Sum_probs=32.5
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccc
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQ 67 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~q 67 (327)
.+..++.+|+|+|++|||||||+..|+..+ +..+++.|.+.
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 345678899999999999999999999976 24566666543
No 96
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.48 E-value=8.3e-07 Score=76.38 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=64.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF---P--AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
+|+|+|++||||||+|..|++.+ + ..+++.|.++-+ +. + ... +++.+ ....|..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~--l~---~--------~~~------~~~~~--~~~~~~~ 59 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHG--LN---K--------DLG------FSRED--REENIRR 59 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHh--hh---h--------ccC------CCcch--HHHHHHH
Confidence 47899999999999999999988 4 345666765421 10 0 000 11111 1122222
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhh
Q 020362 109 HASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVE 176 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~ 176 (327)
.....+.+...| ..||+.++..+.... ... .++....++.++||++|.+++.+|- +.+.+..
T Consensus 60 -~~~~a~~l~~~G-~~VIid~~~~~~~~R-~~~-~~l~~~~~~~~i~l~~~~e~~~~R~--~~~~y~~ 121 (149)
T cd02027 60 -IAEVAKLLADAG-LIVIAAFISPYREDR-EAA-RKIIGGGDFLEVFVDTPLEVCEQRD--PKGLYKK 121 (149)
T ss_pred -HHHHHHHHHhCC-CEEEEccCCCCHHHH-HHH-HHhcCCCCEEEEEEeCCHHHHHHhC--chhhHHH
Confidence 222333444455 456776665432211 000 0111236788999999999999993 4444444
No 97
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.45 E-value=1.8e-06 Score=76.25 Aligned_cols=112 Identities=20% Similarity=0.318 Sum_probs=64.7
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF---P--AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFT 102 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s 102 (327)
+..++.+|+|+|++||||||++..|+..+ + ..+++.|.+. +.+. .+.. +.+. -.
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r--~~l~-----------~~~~------~~~~--~~ 72 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR--HGLN-----------KDLG------FSEE--DR 72 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH--hhhc-----------cccC------CCHH--HH
Confidence 44667899999999999999999999886 2 3466777654 2111 0000 0010 01
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHH--HHcCCchhhhcccceEEEEEeCCHHHHHHH
Q 020362 103 ATDFRNHASLAIESILSRDRLPIIAGGSSSYIKA--LVNGDAAEFQLRYECFFLWVDVSLPVLHSF 166 (327)
Q Consensus 103 ~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~a--ll~~~~~~~~~~~~~~~i~L~~~~e~L~~R 166 (327)
...+... ......+...| ..||+.++..+... .+. .......++++||++|.+++.+|
T Consensus 73 ~~~~~~~-~~~~~~~~~~G-~~VI~d~~~~~~~~r~~~~----~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 73 KENIRRI-GEVAKLFVRNG-IIVITSFISPYRADRQMVR----ELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHHHHH-HHHHHHHHcCC-CEEEEecCCCCHHHHHHHH----HhCcCCCeEEEEEeCCHHHHHHh
Confidence 1223222 22334445555 55777777644321 111 11122357789999999999998
No 98
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.44 E-value=1.2e-07 Score=86.88 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=29.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCC-------CeEEeCCccc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFP-------AEIINSDKMQ 67 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~-------~eiIs~Ds~q 67 (327)
+|.|.|++||||||+|..|+..+. ..+|+.|.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 578999999999999999998873 3588999873
No 99
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.44 E-value=1.3e-06 Score=90.58 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC------eEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA------EIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTAT 104 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~------eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~ 104 (327)
++.+|+|+|++||||||+|..||++++. .+++.|.+ .++|. + | ..|+..
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v--r~~l~---g-----e---------------~~f~~~ 445 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV--RKHLS---S-----E---------------LGFSKE 445 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH--HHhcc---C-----C---------------CCCCHH
Confidence 4569999999999999999999999985 77777765 23331 0 0 012221
Q ss_pred ----HHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHH
Q 020362 105 ----DFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLV 180 (327)
Q Consensus 105 ----~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~ 180 (327)
.+.+.+ .....+.+.|. .+|+..+..|....-... ......-.+.++||+++.+++.+|+.+. ++.....
T Consensus 446 er~~~~~~l~-~~a~~v~~~Gg-~vI~~~~~p~~~~R~~nr-~llk~~g~fivV~L~~p~e~l~~R~rr~---Ll~~~~~ 519 (568)
T PRK05537 446 DRDLNILRIG-FVASEITKNGG-IAICAPIAPYRATRREVR-EMIEAYGGFIEVHVATPLEVCEQRDRKG---LYAKARE 519 (568)
T ss_pred HHHHHHHHHH-HHHHHHHhCCC-EEEEEeCCchHHHHHHHH-HHHhhcCCEEEEEEcCCHHHHHHhcccc---ccccchh
Confidence 222222 12344556665 466766655432110000 0011112346899999999999997432 3333335
Q ss_pred HHHHhhhcC
Q 020362 181 EEVKQMFDP 189 (327)
Q Consensus 181 ~Ev~~l~~~ 189 (327)
++++.++..
T Consensus 520 ~~i~~l~~~ 528 (568)
T PRK05537 520 GKIKGFTGI 528 (568)
T ss_pred chhhccccc
Confidence 667777654
No 100
>PRK13808 adenylate kinase; Provisional
Probab=98.43 E-value=6.1e-07 Score=87.19 Aligned_cols=122 Identities=19% Similarity=0.129 Sum_probs=67.5
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCcccee-ccccCCCcccCHHHHHHHHHHH
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHL-LGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhl-id~~~~~~~~s~~~f~~~a~~~ 113 (327)
|+|+||+||||||++..|++.||..+|++|.+-.. .+.-.| + ... .++.++ -+.+-|+ ..+..+..+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~-~i~~~s--~-~g~--~~~~~~~~G~lVPd-----eiv~~li~e~ 71 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRA-AVAAGT--P-VGL--KAKDIMASGGLVPD-----EVVVGIISDR 71 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHH-HhhcCC--h-hhH--HHHHHHHcCCCCCH-----HHHHHHHHHH
Confidence 88999999999999999999999999998876422 221111 0 000 000000 0111122 2233333333
Q ss_pred HHHHHhCCCCeEEEcCchH-HHH-----HHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhh
Q 020362 114 IESILSRDRLPIIAGGSSS-YIK-----ALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRM 174 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~-Y~~-----all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~M 174 (327)
+..... ..-+|++|-.- +-+ .++.. ..-...++|+|++|++++.+|+..|...|
T Consensus 72 l~~~~~--~~G~ILDGFPRt~~QA~~L~~ll~~-----~gi~PDlVI~LDVp~evll~Rl~~R~~~~ 131 (333)
T PRK13808 72 IEQPDA--ANGFILDGFPRTVPQAEALDALLKD-----KQLKLDAVVELRVNEGALLARVETRVAEM 131 (333)
T ss_pred Hhcccc--cCCEEEeCCCCCHHHHHHHHHHHHh-----cCCCcCeEEEEECCHHHHHHHHHcCcccc
Confidence 433221 12356666221 111 11110 00124568999999999999999997654
No 101
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.42 E-value=3.5e-07 Score=81.76 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=28.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCC---------eEEeCCccc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPA---------EIINSDKMQ 67 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~---------eiIs~Ds~q 67 (327)
+|.|+||+||||||+|..|+..++. .+++.|...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 6899999999999999999999862 366666653
No 102
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.41 E-value=1.2e-06 Score=77.72 Aligned_cols=34 Identities=32% Similarity=0.570 Sum_probs=31.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+|+|+|..||||||++..|++..+..+|++|.+-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~ 34 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIA 34 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHH
Confidence 4899999999999999999999889999999873
No 103
>PRK04040 adenylate kinase; Provisional
Probab=98.40 E-value=1.9e-06 Score=77.27 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=32.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC--CCeEEeCCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF--PAEIINSDKM 66 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~--~~eiIs~Ds~ 66 (327)
+++|+|+|++||||||++..|++.+ +..+++.|++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 5799999999999999999999999 7889998885
No 104
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.40 E-value=1.4e-06 Score=77.37 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=31.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYK 70 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~ 70 (327)
+|+|.|++||||||||..|++.+ +..+|+.|.+..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 58999999999999999999986 46799999976543
No 105
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.39 E-value=2.9e-06 Score=74.43 Aligned_cols=115 Identities=20% Similarity=0.392 Sum_probs=74.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
+.++|+|+||+|+||-||--....++...- .+++-+ -++|... +-.+-.| +..+..+|.+.+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~----r~~fvr--RvITRpa---~ag~EdH---------~avs~~eF~~~a 65 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRP----RLHFVR--RVITRPA---DAGGEDH---------DALSEAEFNTRA 65 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCC----ceEEEE--EEecccC---CCCcccc---------cccCHHHHHHHh
Confidence 568999999999999999998888875430 001001 2344321 1122344 234556666665
Q ss_pred H------------------HHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccc-eEEEEEeCCHHHHHHHhhhhh
Q 020362 111 S------------------LAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE-CFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 111 ~------------------~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~-~~~i~L~~~~e~L~~RL~~Rv 171 (327)
. ..|.+-+++|.+ ||+.||-.|+ ++.+.+|. ..++.+.+++++|.+||.+|-
T Consensus 66 ~~g~FAlsWqAhGL~Ygip~eId~wl~~G~v-vl~NgSRa~L--------p~arrry~~Llvv~ita~p~VLaqRL~~RG 136 (192)
T COG3709 66 GQGAFALSWQAHGLSYGIPAEIDLWLAAGDV-VLVNGSRAVL--------PQARRRYPQLLVVCITASPEVLAQRLAERG 136 (192)
T ss_pred hcCceeEEehhcCccccCchhHHHHHhCCCE-EEEeccHhhh--------HHHHHhhhcceeEEEecCHHHHHHHHHHhc
Confidence 3 345665666654 7788888775 34455554 457788999999999999997
Q ss_pred h
Q 020362 172 D 172 (327)
Q Consensus 172 ~ 172 (327)
.
T Consensus 137 R 137 (192)
T COG3709 137 R 137 (192)
T ss_pred c
Confidence 4
No 106
>PLN02348 phosphoribulokinase
Probab=98.38 E-value=2.3e-06 Score=84.76 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCC--------------------eEEeCCccchh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPA--------------------EIINSDKMQVY 69 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~--------------------eiIs~Ds~qvy 69 (327)
..+.+|.|.|++||||||+|..|+..|+. .+|+.|.++.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~ 106 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSL 106 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCC
Confidence 34678999999999999999999999863 48999987754
No 107
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.35 E-value=1.3e-06 Score=77.19 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=60.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASL 112 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~ 112 (327)
++|+|+|++|+||||++..|+ .+|..+++.-.+-. .++++..+|.....-..+.... ..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~-------------------e~~~~~~~de~r~s~~vD~d~~-~~ 59 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAK-------------------ENGLYTEYDELRKSVIVDVDKL-RK 59 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHH-------------------hcCCeeccCCccceEEeeHHHH-HH
Confidence 379999999999999999999 88998887542211 1223333332211111122222 22
Q ss_pred HHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 113 AIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 113 ~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.++.+.. ... .|+.+ ++ - .++. -..++|.|.+++++|++||..|-
T Consensus 60 ~le~~~~-~~~-~Ivd~-H~-~-hl~~---------~~dlVvVLR~~p~~L~~RLk~RG 104 (180)
T COG1936 60 RLEELLR-EGS-GIVDS-HL-S-HLLP---------DCDLVVVLRADPEVLYERLKGRG 104 (180)
T ss_pred HHHHHhc-cCC-eEeec-hh-h-hcCC---------CCCEEEEEcCCHHHHHHHHHHcC
Confidence 3344432 222 34443 21 1 1221 12468889999999999999996
No 108
>PRK02496 adk adenylate kinase; Provisional
Probab=98.35 E-value=1.4e-06 Score=76.93 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=30.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.|+|+||+||||||+|..||+.+|...++.|.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~ 35 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDI 35 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHH
Confidence 488999999999999999999999999998765
No 109
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.34 E-value=3.5e-07 Score=82.55 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC---CeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP---AEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~---~eiIs~Ds~ 66 (327)
++..+|+|+||+|||||||+..|+..++ ..+++.|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 4567999999999999999999998875 568888875
No 110
>PRK15453 phosphoribulokinase; Provisional
Probab=98.33 E-value=3.5e-06 Score=80.16 Aligned_cols=42 Identities=21% Similarity=0.498 Sum_probs=36.6
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccchh
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQVY 69 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~qvy 69 (327)
|..++++|.|+|.+||||||++..|++.|+ ..+|+.|+++.|
T Consensus 1 Ms~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~y 47 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRY 47 (290)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccccc
Confidence 356788999999999999999999998774 568999998865
No 111
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.33 E-value=5.9e-06 Score=73.02 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=30.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+|+|+|++||||||++..|++ +|..+|++|.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence 489999999999999999998 89999999975
No 112
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.32 E-value=3.9e-06 Score=79.50 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=71.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
++|+|+|.+||||||+|..|++.+ ...+|+-|++.+-+. + +. ..-.....+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~---------------------~-y~--~~~~Ek~~R 57 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRN---------------------D-YA--DSKKEKEAR 57 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTS---------------------S-S----GGGHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchh---------------------h-hh--chhhhHHHH
Confidence 689999999999999999999875 234566555442111 0 10 112345555
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCch-hhhcccceEEEEEeCCHHHHHHHhhhhhhh-hhhccHHHHHHh
Q 020362 108 NHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAA-EFQLRYECFFLWVDVSLPVLHSFVSERVDR-MVELGLVEEVKQ 185 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~-~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~-Ml~~Gl~~Ev~~ 185 (327)
......++..++++. .||+++.+ |+++.-..+.- .-.....+++|+++++.+...+|=.+|.+. -+....++++..
T Consensus 58 ~~l~s~v~r~ls~~~-iVI~Dd~n-YiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~ 135 (270)
T PF08433_consen 58 GSLKSAVERALSKDT-IVILDDNN-YIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQ 135 (270)
T ss_dssp HHHHHHHHHHHTT-S-EEEE-S----SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHH
T ss_pred HHHHHHHHHhhccCe-EEEEeCCc-hHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHH
Confidence 556666777676664 57777744 55554332100 112345678999999999999998888754 355566666666
Q ss_pred hhcC
Q 020362 186 MFDP 189 (327)
Q Consensus 186 l~~~ 189 (327)
=|+.
T Consensus 136 RfE~ 139 (270)
T PF08433_consen 136 RFEE 139 (270)
T ss_dssp H---
T ss_pred HhcC
Confidence 6653
No 113
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.30 E-value=4.9e-07 Score=86.46 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=31.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC-------CeEEeCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP-------AEIINSDKMQ 67 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~-------~eiIs~Ds~q 67 (327)
.+.|.+|.|.||+||||||++..|...+. ..+|+.|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 35678999999999999999987765542 4578999865
No 114
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.29 E-value=7.4e-06 Score=71.58 Aligned_cols=105 Identities=20% Similarity=0.301 Sum_probs=56.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCH--
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTA-- 103 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~-- 103 (327)
++.+|.|+|.+||||||||..|.+++ +..++..|.++ .+++- +-.|+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR--~~l~~-----------------------dl~fs~~d 55 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR--HGLNA-----------------------DLGFSKED 55 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC--TTTTT-----------------------T--SSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh--hccCC-----------------------CCCCCHHH
Confidence 35789999999999999999999887 34566666543 23211 001222
Q ss_pred -HHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhccc---ceEEEEEeCCHHHHHHH
Q 020362 104 -TDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRY---ECFFLWVDVSLPVLHSF 166 (327)
Q Consensus 104 -~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~---~~~~i~L~~~~e~L~~R 166 (327)
.+..+.......-+...| ..+||-....|.+ ..+ ..|..+ .+.-+|+++|.+++.+|
T Consensus 56 R~e~~rr~~~~A~ll~~~G-~ivIva~isp~~~-~R~----~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 56 REENIRRIAEVAKLLADQG-IIVIVAFISPYRE-DRE----WARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEE----SHH-HHH----HHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CeEEEeeccCchH-HHH----HHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 222222222223333444 4566655555532 111 122222 47889999999999999
No 115
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.29 E-value=4.7e-06 Score=75.03 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=32.9
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
++|+|+|+.||||||++..|++.+|..+|++|.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~ 36 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYA 36 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHH
Confidence 47999999999999999999999999999999985
No 116
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.28 E-value=4.7e-06 Score=74.05 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=66.0
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCe--EEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcc---cCHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAE--IINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNAN---FTATDFR 107 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~e--iIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~---~s~~~f~ 107 (327)
++|++-|+|.|||||||+.|...+... .++.|.+. +.|+-....+ ..|. +. .++.. -....+.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~--~~~~~~~~~~----~~g~-----~~-~~~~~~~~~~~~~~~ 69 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFV--DMMPPGRYRP----GDGL-----EP-AGDRPDGGPLFRRLY 69 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHH--HHS-GGGGTS----TTSE-----EE-ETTSEEE-HHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHH--hhcCcccccC----Cccc-----cc-cccCCchhHHHHHHH
Confidence 689999999999999999999999765 56677654 1121111000 0010 00 00000 1112233
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCch-------HHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhh
Q 020362 108 NHASLAIESILSRDRLPIIAGGSS-------SYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMV 175 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~-------~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml 175 (327)
......+....+.|. .||+++-. -+++.++. .++++++.+.||.+++.+|=..|-|+..
T Consensus 70 ~~~~~~iaa~a~aG~-~VIvD~v~~~~~~l~d~l~~~L~--------~~~vl~VgV~Cpleil~~RE~~RgDR~~ 135 (174)
T PF07931_consen 70 AAMHAAIAAMARAGN-NVIVDDVFLGPRWLQDCLRRLLA--------GLPVLFVGVRCPLEILERRERARGDRPI 135 (174)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE--TTTHHHHHHHHHHHT--------TS-EEEEEEE--HHHHHHHHHHHTSSST
T ss_pred HHHHHHHHHHHhCCC-CEEEecCccCcHHHHHHHHHHhC--------CCceEEEEEECCHHHHHHHHHhcCCcch
Confidence 334455655555555 46655321 12222222 4688999999999999999999998643
No 117
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.28 E-value=3.9e-06 Score=76.40 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=73.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEE-----eCCccchhcCcccccCCCChhhhcCccceeccccCCCc-ccCHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEII-----NSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA-NFTATDF 106 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiI-----s~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~-~~s~~~f 106 (327)
++|+++|++||||||+|.+||+.+.-++. +.|-...|. .|.-.|-. +--..-|
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~---------------------~DEslpi~ke~yres~ 60 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGIL---------------------WDESLPILKEVYRESF 60 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhee---------------------cccccchHHHHHHHHH
Confidence 58999999999999999999998743221 122111111 11111110 1112223
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchh-hhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHh
Q 020362 107 RNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAE-FQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQ 185 (327)
Q Consensus 107 ~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~-~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~ 185 (327)
.+.+.+.|..... ..-|||+.|++| +++-..+.-+ ....-..++|++.++.+++.+|=..|- +.+...++..+..
T Consensus 61 ~ks~~rlldSalk--n~~VIvDdtNYy-ksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg-epip~Evl~qly~ 136 (261)
T COG4088 61 LKSVERLLDSALK--NYLVIVDDTNYY-KSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG-EPIPEEVLRQLYD 136 (261)
T ss_pred HHHHHHHHHHHhc--ceEEEEecccHH-HHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC-CCCCHHHHHHHHH
Confidence 3444445544432 446888887765 4443322111 122346789999999999999987774 3444444444444
Q ss_pred hhc
Q 020362 186 MFD 188 (327)
Q Consensus 186 l~~ 188 (327)
=|+
T Consensus 137 RfE 139 (261)
T COG4088 137 RFE 139 (261)
T ss_pred hhc
Confidence 343
No 118
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.26 E-value=1.3e-06 Score=77.14 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=59.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhh-cCccceeccccCCCcccCHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEEC-HGVPHHLLGIIEPNANFTATDFRNHASL 112 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~-~gvphhlid~~~~~~~~s~~~f~~~a~~ 112 (327)
+|+|+|++|||||++|..|+..++..++ -+.|++|..+|+ ++++||...- +..-.+...+.+.+ .
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~-----------~iat~~~~~~e~~~ri~~h~~~R--~~~w~t~E~~~~l~-~ 68 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVL-----------YIATAQPFDDEMAARIAHHRQRR--PAHWQTVEEPLDLA-E 68 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcE-----------eCcCCCCChHHHHHHHHHHHhcC--CCCCeEecccccHH-H
Confidence 6899999999999999999999875443 266777777765 7888987754 32212333333333 3
Q ss_pred HHHHHHhCCCCeEEEcCchHHHHHHH
Q 020362 113 AIESILSRDRLPIIAGGSSSYIKALV 138 (327)
Q Consensus 113 ~i~~i~~~gk~pIvvGGT~~Y~~all 138 (327)
.++.....++ .|++++...|+..++
T Consensus 69 ~i~~~~~~~~-~VlID~Lt~~~~n~l 93 (170)
T PRK05800 69 LLRADAAPGR-CVLVDCLTTWVTNLL 93 (170)
T ss_pred HHHhhcCCCC-EEEehhHHHHHHHHh
Confidence 4444333344 588888777765543
No 119
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.25 E-value=1.2e-05 Score=73.40 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=34.3
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGL 72 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gl 72 (327)
..+|.|-||+||||||+|..||++||+..+++-. +||-+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGa--mYRa~ 42 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGA--MYRAV 42 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccH--HHHHH
Confidence 3789999999999999999999999999998776 46643
No 120
>PRK05439 pantothenate kinase; Provisional
Probab=98.25 E-value=3.8e-07 Score=87.94 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=33.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC-------CeEEeCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP-------AEIINSDKMQ 67 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~-------~eiIs~Ds~q 67 (327)
...+.+|.|.|++||||||+|..|+..++ ..+|+.|.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 35678999999999999999999998653 4699999975
No 121
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.22 E-value=5.1e-06 Score=74.12 Aligned_cols=33 Identities=24% Similarity=0.527 Sum_probs=29.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF---PAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds~ 66 (327)
+|.|+||+|||||||+..|+..+ +..+++.|.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 58999999999999999999987 3678999974
No 122
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.20 E-value=3.8e-06 Score=88.71 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=34.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGL 72 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gl 72 (327)
.++|+|.||+||||||+|..||+++|.+++++|. +||.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~--~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGA--LYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHH--hhhHH
Confidence 4589999999999999999999999999988875 67754
No 123
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.20 E-value=8.5e-06 Score=73.65 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=30.7
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.+|.|+|..||||||++..|+. +|..+|++|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHH
Confidence 4799999999999999999997 79999999975
No 124
>PLN02459 probable adenylate kinase
Probab=98.18 E-value=1.4e-05 Score=75.32 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=67.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
++..|+|+||+||||||+|..||+.+|...|++..+-. ..+.-.|. .... + -++++-..-..-..-..+.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR-~ei~~~t~---lg~~--i----~~~~~~G~lVPdeiv~~ll 97 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVR-EEIKSSGP---LGAQ--L----KEIVNQGKLVPDEIIFSLL 97 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHH-HHHhccch---hHHH--H----HHHHHcCCccCHHHHHHHH
Confidence 34568889999999999999999999999999877531 11211110 0000 0 0011100101111122222
Q ss_pred HHHHHHHHhCCCCeEEEcCch-HHHHHHH-cCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 111 SLAIESILSRDRLPIIAGGSS-SYIKALV-NGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~-~Y~~all-~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.+.+......+..-+|.+|.. ..-++.. +. + .. ...+|+|+++.++|.+|+..|.
T Consensus 98 ~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~----~-~~-id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 98 SKRLEAGEEEGESGFILDGFPRTVRQAEILEG----V-TD-IDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred HHHHhcccccCCceEEEeCCCCCHHHHHHHHh----c-CC-CCEEEEEECCHHHHHHHhhccc
Confidence 333332211233446777643 1222211 11 1 11 2458999999999999999884
No 125
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.18 E-value=2.2e-05 Score=72.10 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC---Ce--E-EeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP---AE--I-INSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~---~e--i-Is~Ds~q 67 (327)
.++.+|.|.||+|||||||+..|+..+. +. + |+.|...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 4578999999999999999999998773 32 4 8888743
No 126
>PRK07429 phosphoribulokinase; Provisional
Probab=98.17 E-value=1.2e-05 Score=78.18 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=33.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC---CeEEeCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP---AEIINSDKMQ 67 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~---~eiIs~Ds~q 67 (327)
..++.+|.|+|++||||||++..|+..++ +.+|..|.+.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 35677999999999999999999999987 5688999864
No 127
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.17 E-value=8.5e-06 Score=72.42 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+.++|+|.|+.||||||++..|++.++
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999873
No 128
>PLN02674 adenylate kinase
Probab=98.12 E-value=1.1e-05 Score=75.39 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+..+.|+|+||+||||||+|..||+++|...||++.+-
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHH
Confidence 33567899999999999999999999999999988764
No 129
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.11 E-value=4.3e-06 Score=81.63 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=28.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCC------eEEeCCccc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPA------EIINSDKMQ 67 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~------eiIs~Ds~q 67 (327)
+++++|++|+||||++..|+..+.. .+++.|..-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 4789999999999999999977753 488888754
No 130
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.11 E-value=1.4e-05 Score=83.93 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=68.9
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCccc
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANF 101 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~ 101 (327)
.+..++++|+++|.+||||||+|..|++++ +..+|+.|.++ +++. .+.+ +++ +.
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r--~~l~-----------~~~~------~~~--~~ 513 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVR--HGLN-----------RDLG------FSD--AD 513 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhh--hccC-----------CCCC------CCH--HH
Confidence 345568999999999999999999999986 35788899865 2332 0111 011 11
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCeEEEcCchHH---HHHHHcCCchhhhcccceEEEEEeCCHHHHHHHh
Q 020362 102 TATDFRNHASLAIESILSRDRLPIIAGGSSSY---IKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFV 167 (327)
Q Consensus 102 s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y---~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL 167 (327)
....|...+ .........| ..||+..+..| ++.+.+ ......++++||+++.+++.+|.
T Consensus 514 r~~~~~~l~-~~a~~~~~~G-~~Vivda~~~~~~~R~~~r~-----l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 514 RVENIRRVA-EVARLMADAG-LIVLVSFISPFREERELARA-----LHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHHHHH-HHHHHHHhCC-CEEEEECCCCCHHHHHHHHH-----hcccCCeEEEEECCCHHHHHhhC
Confidence 122333332 2233344445 56777776533 222211 11223568999999999999993
No 131
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.11 E-value=3.1e-06 Score=79.85 Aligned_cols=126 Identities=16% Similarity=0.237 Sum_probs=74.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC-------CeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP-------AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANF 101 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~-------~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~ 101 (327)
...+-+|.|+|+.|+||||+|..|+..+. .++|-+|.++.+... .+ ++.+.+.-..-+.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~--------L~-----~~glm~rKGfPeSy 145 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAV--------LD-----ERGLMARKGFPESY 145 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhH--------hh-----hccccccCCCCccc
Confidence 35577999999999999999999987652 679999999865421 00 11122222223456
Q ss_pred CHHHHHHHHHHHHH---------------H-------HHhCCCCeEEEcCchHHHHHHHcCCchh-hhcccceEEEEEeC
Q 020362 102 TATDFRNHASLAIE---------------S-------ILSRDRLPIIAGGSSSYIKALVNGDAAE-FQLRYECFFLWVDV 158 (327)
Q Consensus 102 s~~~f~~~a~~~i~---------------~-------i~~~gk~pIvvGGT~~Y~~all~~~~~~-~~~~~~~~~i~L~~ 158 (327)
++..|.+...+.-. + +..+.+ .+|+.| .|+ |..+. ++ +...+-...|++|+
T Consensus 146 D~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pd-IlI~EG--~nv--Lq~~~-p~~~~sdffDfSIyvDa 219 (283)
T COG1072 146 DVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPD-ILIVEG--NNV--LQDGE-PWLFLSDFFDFSIYVDA 219 (283)
T ss_pred cHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCC-EEEEec--hhh--hcCCC-ccccccccceEEEEecC
Confidence 66666655433210 0 111112 234444 332 22322 11 11223345789999
Q ss_pred CHHHHHHHhhhhhhh
Q 020362 159 SLPVLHSFVSERVDR 173 (327)
Q Consensus 159 ~~e~L~~RL~~Rv~~ 173 (327)
+.+.|++|+.+|.-.
T Consensus 220 ~~~~le~wyi~Rfl~ 234 (283)
T COG1072 220 DEELLEERYIERFLK 234 (283)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999843
No 132
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.09 E-value=2.5e-05 Score=71.08 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+..|.|+|..||||||++..|++.+|..++++|.+-
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~ 41 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTIS 41 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHH
Confidence 3578999999999999999999999999999999864
No 133
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.09 E-value=3.2e-05 Score=67.81 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.6
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++|+|.|+.||||||++..|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999988
No 134
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.08 E-value=5e-05 Score=72.64 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeE
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEI 60 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ei 60 (327)
...+|+|+|++||||||++..|. ..|..+
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~ 33 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYC 33 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeE
Confidence 34699999999999999999996 345433
No 135
>PRK14526 adenylate kinase; Provisional
Probab=98.07 E-value=2.5e-05 Score=71.32 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=30.6
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
|+|+||+||||||++..||+.++...|+++.+-
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~ll 35 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLF 35 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHH
Confidence 789999999999999999999999999988763
No 136
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.06 E-value=1.5e-05 Score=73.47 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
++.+|+|.|++||||||++..||+.+|..++++|.+
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~ 38 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM 38 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh
Confidence 357999999999999999999999999999999984
No 137
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.05 E-value=1.4e-05 Score=79.58 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=31.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+.|+|+|..||||||++..|++ +|+.+|++|.+-
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~ 35 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLA 35 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHH
Confidence 3699999999999999999997 899999999874
No 138
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.05 E-value=7.2e-05 Score=68.31 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=28.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
+|+|-|..||||||++..|+++++.+++..+.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~ 32 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAG 32 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccc
Confidence 58999999999999999999999887776553
No 139
>PLN02422 dephospho-CoA kinase
Probab=98.05 E-value=3.2e-05 Score=71.78 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=31.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
++|+|+|..||||||++..|+ ++|+.+|++|.+-
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~ 35 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVA 35 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHH
Confidence 479999999999999999999 6899999999873
No 140
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.04 E-value=5.6e-05 Score=68.96 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
...+|+|.||=|+||||||..||++++..++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 3579999999999999999999999986543
No 141
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.04 E-value=2.8e-05 Score=69.43 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+|.|+|..||||||++..|++ +|+.+|++|.+-
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~ 34 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIA 34 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHH
Confidence 689999999999999999998 899999999864
No 142
>PRK06761 hypothetical protein; Provisional
Probab=98.04 E-value=5e-05 Score=72.44 Aligned_cols=134 Identities=17% Similarity=0.262 Sum_probs=75.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
.++|+|+|++||||||++..|++.+....++.|... .+. . +.+.+..+ ...++..+|...+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~--~~~-~----~~p~d~~~-----------~~~~~~eer~~~l~ 64 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYL--EGN-L----DHPADYDG-----------VACFTKEEFDRLLS 64 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEe--cCC-C----CCchhhcc-----------ccCCCHHHHHHHHH
Confidence 469999999999999999999999976555555421 111 0 01112111 11234444544432
Q ss_pred H-------HHHHHHhCCCCeEEE--cCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHH
Q 020362 112 L-------AIESILSRDRLPIIA--GGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEE 182 (327)
Q Consensus 112 ~-------~i~~i~~~gk~pIvv--GGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~E 182 (327)
+ .+++....|...|+. +-...|.+.+-+.. + .......++ +.|.+.+.+|+.+|.++.+.+.+.+.
T Consensus 65 ~~~~f~~~l~~~~~~~g~~~i~~~~~l~~~yr~~~~~~~---~-~~~~v~~~h-~~p~e~i~~R~~~rw~~f~~a~l~~d 139 (282)
T PRK06761 65 NYPDFKEVLLKNVLKKGDYYLLPYRKIKNEFGDQFSDEL---F-NDISKNDIY-ELPFDKNTELITDRWNDFAEIALEEN 139 (282)
T ss_pred hhhHHHHHHHHHHHHcCCeEEEEehhhhHHHhhhhhhhh---c-ccceeeeee-cCCHHHHHHHHHHHHHHHHHHhhccC
Confidence 2 233333445443332 11113433332110 0 011233344 89999999999999999999877766
Q ss_pred HHhhhc
Q 020362 183 VKQMFD 188 (327)
Q Consensus 183 v~~l~~ 188 (327)
--.+|+
T Consensus 140 q~~ifE 145 (282)
T PRK06761 140 KVYIFE 145 (282)
T ss_pred ceEEEe
Confidence 555665
No 143
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.04 E-value=4e-06 Score=86.84 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC-CeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP-AEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~-~eiIs~Ds~q 67 (327)
.+.+|.|.||+|||||||+..|+..++ ..+|+.|.+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 457999999999999999999999884 5699999864
No 144
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.01 E-value=5.5e-05 Score=70.74 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=32.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+|.|+|..||||||++..|.+.+|..+|++|.+-
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~ia 36 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVV 36 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHH
Confidence 47999999999999999999998999999999863
No 145
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.00 E-value=8.1e-05 Score=65.96 Aligned_cols=28 Identities=43% Similarity=0.650 Sum_probs=24.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
+|+|.|+.||||||++..|++.++..++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 4899999999999999999998765444
No 146
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.98 E-value=8e-06 Score=75.46 Aligned_cols=138 Identities=23% Similarity=0.398 Sum_probs=88.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh-------CCC------eEEeCCccchhc-CcccccCCCChhhhcCccceecccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR-------FPA------EIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGII 95 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~-------~~~------eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~ 95 (327)
....++.+.|++||||||++..++++ |+. .||.+|.++.|+ .||...+.-+...++|.|.
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapw------ 190 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPW------ 190 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCc------
Confidence 34568999999999999999999874 332 357899999888 5787776555566777664
Q ss_pred CCCcccCHHHHHHHHHHHHHHH------------------------HhCCCCeEEEcCchHHHHHHHcCCchhhhcccc-
Q 020362 96 EPNANFTATDFRNHASLAIESI------------------------LSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE- 150 (327)
Q Consensus 96 ~~~~~~s~~~f~~~a~~~i~~i------------------------~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~- 150 (327)
.|+...|.+.+.. +..+ ....++ +|+.| .|+ |++.. .|..-++
T Consensus 191 ----TFD~~lfl~l~k~-lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rI-vI~EG--nYl--Ll~~~--~Wkdi~k~ 258 (323)
T KOG2702|consen 191 ----TFDSNLFLQLCKI-LKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRI-VILEG--NYL--LLDQE--NWKDIYKT 258 (323)
T ss_pred ----ccCHHHHHHHHHH-HhhcCCCceeccccccccCCCCccceeecccceE-EEEec--cEE--EecCc--cHHHHHHH
Confidence 4666777776543 2211 112233 33333 332 22221 1211111
Q ss_pred -eEEEEEeCCHHHHHHHhhhhhhhhhhccHH---HHHHhhhc
Q 020362 151 -CFFLWVDVSLPVLHSFVSERVDRMVELGLV---EEVKQMFD 188 (327)
Q Consensus 151 -~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~---~Ev~~l~~ 188 (327)
....+++.+-+.-++|+++|. +..||+ +|.++=++
T Consensus 259 ~d~k~~idV~~~~a~~RVa~RH---l~sGl~~t~~ea~er~d 297 (323)
T KOG2702|consen 259 LDDKYKIDVDYEAAEERVAKRH---LQSGLVTTIAEARERFD 297 (323)
T ss_pred hhhheeccccHHHHHHHHHHHh---hcccccCCHHHHHhhcc
Confidence 124678999999999999998 788964 45554444
No 147
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.96 E-value=4.2e-05 Score=81.57 Aligned_cols=37 Identities=27% Similarity=0.474 Sum_probs=33.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGL 72 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gl 72 (327)
+|+|.||+||||||+|..||+++|..++++..| ||.+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~--~r~~ 39 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAM--YRAC 39 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcE--eHHH
Confidence 789999999999999999999999999999884 5553
No 148
>PRK13975 thymidylate kinase; Provisional
Probab=97.95 E-value=0.00011 Score=65.05 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=25.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
+++|+|.|+.||||||++..|+++++..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4699999999999999999999999853
No 149
>PRK13973 thymidylate kinase; Provisional
Probab=97.92 E-value=3.9e-05 Score=69.79 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=27.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC---CCeEEe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF---PAEIIN 62 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs 62 (327)
.++|+|-|+.||||||++..|++.+ |..++.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~ 36 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLV 36 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5899999999999999999999998 555553
No 150
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.89 E-value=3.9e-05 Score=67.92 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=24.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.++|+|.|+.||||||++..|++.++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999854
No 151
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.87 E-value=5.7e-05 Score=69.57 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=77.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH--
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA-- 110 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a-- 110 (327)
+-|+|+||+|+||++|...|-+.+++-. ---....|..|...|..|..||+.+.-+.........|++-+
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~--------~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~ 109 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMF--------GFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATF 109 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcc--------eEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhh
Confidence 7899999999999999999999998610 001244566788889999999887544333233333444333
Q ss_pred --------HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEe-CCHHHHHHHhhhhhhhhh
Q 020362 111 --------SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVD-VSLPVLHSFVSERVDRMV 175 (327)
Q Consensus 111 --------~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~-~~~e~L~~RL~~Rv~~Ml 175 (327)
..+++++...|+..|+- -.+.|........++.+++++. ++-..+.+|+.+|.-.|-
T Consensus 110 ~gn~yGtsi~av~~~~~~gk~~ild--------Id~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~ 175 (231)
T KOG0707|consen 110 SGNKYGTSIAAVQRLMLSGKVCILD--------IDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETE 175 (231)
T ss_pred hcccCCchHHHHHHHHhcCCcceee--------hhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchH
Confidence 23444455555543321 1122221111123456677665 667899999999954443
No 152
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.87 E-value=7.1e-05 Score=70.97 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=29.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCccc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF---PAEIINSDKMQ 67 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds~q 67 (327)
+|.|+|++|||||||+..|+..+ ++.+|+.|.+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 58899999999999999999887 46689999653
No 153
>COG4639 Predicted kinase [General function prediction only]
Probab=97.87 E-value=6.9e-05 Score=65.39 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=70.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
..+++++|++||||||+|.+.-. +.++||.|+++.-.|-+ .-.|..+ =+-.+--+.+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~--~~~~lsld~~r~~lg~~------~~~e~sq--------------k~~~~~~~~l~ 59 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL--QNYVLSLDDLRLLLGVS------ASKENSQ--------------KNDELVWDILY 59 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC--CcceecHHHHHHHhhhc------hhhhhcc--------------ccHHHHHHHHH
Confidence 57899999999999999998543 57899999988544411 0111110 01112223445
Q ss_pred HHHHHHHhCCCCeEEEcCchHHH---HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhh
Q 020362 112 LAIESILSRDRLPIIAGGSSSYI---KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~Y~---~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~R 170 (327)
..++....+|+.-|+ ++|+.-+ +-+++ + ....++...+||++.|.+.+.+|...|
T Consensus 60 ~~l~qrl~~Gk~tii-dAtn~rr~~r~~l~~-L--a~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 60 KQLEQRLRRGKFTII-DATNLRREDRRKLID-L--AKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred HHHHHHHHcCCeEEE-EcccCCHHHHHHHHH-H--HHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 556667788998555 5677422 22221 0 112345567799999999999996533
No 154
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.86 E-value=1.1e-05 Score=71.83 Aligned_cols=33 Identities=27% Similarity=0.557 Sum_probs=30.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.|+|+||+||||||+|..||++++...|+.|.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHH
Confidence 589999999999999999999999999987765
No 155
>PRK14529 adenylate kinase; Provisional
Probab=97.85 E-value=6e-05 Score=69.57 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=28.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
.|+|.||+||||||+|..|++.++...||+..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gd 33 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGA 33 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccch
Confidence 38899999999999999999999998887543
No 156
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.85 E-value=2.1e-05 Score=67.23 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=27.9
Q ss_pred EEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 37 VMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 37 I~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
|+||+||||||+|..||+++|...|+++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHH
Confidence 689999999999999999999999997665
No 157
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.82 E-value=0.00013 Score=68.35 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
....+++.||+|||||++|..+|+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999864
No 158
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.78 E-value=7.3e-05 Score=67.48 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=29.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+|+|+|+.||||||++..|++ +|..+|++|.+-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~ 33 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLA 33 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHH
Confidence 589999999999999998865 799999999873
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.75 E-value=2.8e-05 Score=63.56 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=29.7
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV 68 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv 68 (327)
|+|.||+|||||+++..+|+.++..+++.|...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccc
Confidence 6899999999999999999999988877665443
No 160
>PRK06893 DNA replication initiation factor; Validated
Probab=97.75 E-value=0.00013 Score=67.01 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=50.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDF 106 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f 106 (327)
.+.++|.||+|||||.|+..+|..+ +..+++++....+. -.+ .+......--++|.++.. .....+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~-~~~------~~~~~~~dlLilDDi~~~--~~~~~~ 109 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS-PAV------LENLEQQDLVCLDDLQAV--IGNEEW 109 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh-HHH------HhhcccCCEEEEeChhhh--cCChHH
Confidence 4578999999999999999999764 55666664322110 000 001112222344443321 112344
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCch
Q 020362 107 RNHASLAIESILSRDRLPIIAGGSS 131 (327)
Q Consensus 107 ~~~a~~~i~~i~~~gk~pIvvGGT~ 131 (327)
.......++.+.++++..||++++.
T Consensus 110 ~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 110 ELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4455566777777677666666543
No 161
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00018 Score=64.15 Aligned_cols=112 Identities=23% Similarity=0.301 Sum_probs=61.2
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFT 102 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s 102 (327)
+..++.+|-++|.+||||||+|.+|.+.+ ...++..|.++ |.|-.-+ .||
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR---------------------~gL~~dL----gFs 73 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR---------------------HGLNRDL----GFS 73 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh---------------------hcccCCC----CCC
Confidence 34566799999999999999999999877 23455555543 2221111 133
Q ss_pred HHHHHHHHHH--HHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHH
Q 020362 103 ATDFRNHASL--AIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSF 166 (327)
Q Consensus 103 ~~~f~~~a~~--~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~R 166 (327)
..+=.+...+ .+..+..+.++.+||-=-.-|... -+ ...+.-..-+++=+|+++|.++..+|
T Consensus 74 ~edR~eniRRvaevAkll~daG~iviva~ISP~r~~-R~-~aR~~~~~~~FiEVyV~~pl~vce~R 137 (197)
T COG0529 74 REDRIENIRRVAEVAKLLADAGLIVIVAFISPYRED-RQ-MARELLGEGEFIEVYVDTPLEVCERR 137 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCeEEEEEeeCccHHH-HH-HHHHHhCcCceEEEEeCCCHHHHHhc
Confidence 3333322222 123344555565666322223211 00 00001111246778999999998877
No 162
>PLN02924 thymidylate kinase
Probab=97.74 E-value=0.00024 Score=65.34 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
++.++|+|.|.-||||||++..|++.+..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~ 42 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKG 42 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55789999999999999999999999864
No 163
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.74 E-value=7.3e-05 Score=67.76 Aligned_cols=38 Identities=37% Similarity=0.557 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-CCeEEeCCccchhc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-PAEIINSDKMQVYK 70 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~Ds~qvy~ 70 (327)
+--+|.|.|.|.|||||||..|.+.| |+.+|+-|.+ |+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDF--yK 41 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDF--YK 41 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccc--cC
Confidence 34688999999999999999999999 5789999984 54
No 164
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00024 Score=63.59 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=70.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
..++++|+|+|.+||||-|.+..+++.+++..+|+..+-- +..+ + +..+.-.-|. +++.-..-....--.+
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR-~E~~--~--~gse~g~~I~----~~i~~G~iVP~ei~~~ 75 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLR-AEIA--S--AGSERGALIK----EIIKNGDLVPVEITLS 75 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHH-HHHc--c--ccChHHHHHH----HHHHcCCcCcHHHHHH
Confidence 3568999999999999999999999999999999876431 1110 0 0000000011 1111111122233344
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhccc---ceEEEEEeCCHHHHHHHhhhhhh
Q 020362 109 HASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRY---ECFFLWVDVSLPVLHSFVSERVD 172 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~---~~~~i~L~~~~e~L~~RL~~Rv~ 172 (327)
+...++.....++ -+|++|-.--.+.+. .|...+ ..++++++|+.++.-+||..|-.
T Consensus 76 LL~~am~~~~~~~--~fLIDGyPR~~~q~~-----~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q 135 (195)
T KOG3079|consen 76 LLEEAMRSSGDSN--GFLIDGYPRNVDQLV-----EFERKIQGDPDFVLFFDCPEETMLKRLLHRGQ 135 (195)
T ss_pred HHHHHHHhcCCCC--eEEecCCCCChHHHH-----HHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcc
Confidence 4444444332222 266666321111110 122222 35688999999999999988853
No 165
>PHA00729 NTP-binding motif containing protein
Probab=97.72 E-value=0.00016 Score=66.87 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.0
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
..|+|+|++|||||+||..|+++++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 166
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.71 E-value=0.00031 Score=63.87 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=32.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
..+|.|+|-.||||||+|.-+++ +|..+|++|..-
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~ 36 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVA 36 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHH
Confidence 46899999999999999999998 999999999864
No 167
>PLN02842 nucleotide kinase
Probab=97.68 E-value=0.00013 Score=74.60 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=62.9
Q ss_pred EEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHHHH
Q 020362 36 FVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLAIE 115 (327)
Q Consensus 36 vI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~i~ 115 (327)
.|+|++||||||+|..|++.++...|+++.+- ...+.-.|. ... .+.. .++..+...-..+.....+.++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLL-R~ev~~~T~---iG~--~Ire----~l~~G~lvPdeiv~~ll~drl~ 70 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLL-RAEVSAGTD---IGK--RAKE----FMNSGRLVPDEIVIAMVTGRLS 70 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHH-HHHhccCCH---HHH--HHHH----HHhCCCCCcHHHHHHHHHHHHh
Confidence 37899999999999999999999999987643 112221110 100 0111 1111111122333333333333
Q ss_pred HHHhCCCCeEEEcCch-HHHHHH-HcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 116 SILSRDRLPIIAGGSS-SYIKAL-VNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 116 ~i~~~gk~pIvvGGT~-~Y~~al-l~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
......+. +|.+|-. .+-++. ++. + .....++|+|+++.+++.+|+..|.
T Consensus 71 ~~~~~~~G-~ILDGfPRt~~Qa~~Le~----~-~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 71 REDAKEKG-WLLDGYPRSFAQAQSLEK----L-KIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred CccccCCc-EEEeCCCCcHHHHHHHHh----c-CCCCCEEEEEeCCHHHHHHHHhccc
Confidence 21111222 4446532 122211 110 1 1123569999999999999998875
No 168
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.67 E-value=3.6e-05 Score=69.55 Aligned_cols=36 Identities=33% Similarity=0.583 Sum_probs=30.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQ 67 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~q 67 (327)
|++|+++||||+||||.+.+||.++ ...+|++|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 6899999999999999999999876 24588888654
No 169
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.65 E-value=0.00034 Score=64.68 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=66.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATD 105 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~ 105 (327)
....++|+||+|||||.|+..++.... ..+++.|...-+.. ++ .+......--++|.++... .-..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~-~~------~~~~~~~dlliiDdi~~~~--~~~~ 114 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVP-EV------LEGMEQLSLVCIDNIECIA--GDEL 114 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhH-HH------HHHhhhCCEEEEeChhhhc--CCHH
Confidence 345789999999999999999987653 34556554221100 00 0001111122334332110 1123
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccc-eEEEEEeCC-HHHHHHHhhhhh
Q 020362 106 FRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE-CFFLWVDVS-LPVLHSFVSERV 171 (327)
Q Consensus 106 f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~-~~~i~L~~~-~e~L~~RL~~Rv 171 (327)
+.+..-..++.+.+.|+..+|.-|+..+.+ +....+.++.|+. ..++.+..+ .+.+.+.|.++.
T Consensus 115 ~~~~lf~l~n~~~e~g~~~li~ts~~~p~~--l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 115 WEMAIFDLYNRILESGRTRLLITGDRPPRQ--LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCCChHH--cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 444444566666667776566655543322 1222245555543 245566654 566666665544
No 170
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.64 E-value=0.00024 Score=62.97 Aligned_cols=126 Identities=13% Similarity=0.188 Sum_probs=61.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc-hhcCcccccCCCC-hhhhcCccceeccccCC------CcccCHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ-VYKGLDIVTNKVT-EEECHGVPHHLLGIIEP------NANFTATD 105 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q-vy~gldI~Takp~-~~E~~gvphhlid~~~~------~~~~s~~~ 105 (327)
+|.|.+..|||++++|..||+++|.++++-+-+. +-+...+...... .+|.....-.+.++... ........
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 6899999999999999999999999998765443 2222211111110 01110000000011000 01111223
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhh
Q 020362 106 FRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 106 f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~R 170 (327)
+.....+.|.++.++| ..||+|=.+.| ++.+. -+++-|+|.+|.+.--+|+.+|
T Consensus 81 ~~~~~~~~i~~la~~~-~~Vi~GR~a~~---il~~~-------~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 81 IFRAQSEIIRELAAKG-NCVIVGRCANY---ILRDI-------PNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHHHHHHHH----EEEESTTHHH---HTTT--------TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-CEEEEecCHhh---hhCCC-------CCeEEEEEECCHHHHHHHHHHH
Confidence 3333446777876656 45777766655 34432 2578899999988887777766
No 171
>PF13173 AAA_14: AAA domain
Probab=97.63 E-value=8.9e-05 Score=61.81 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=32.3
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCC----CeEEeCCccchh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFP----AEIINSDKMQVY 69 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~----~eiIs~Ds~qvy 69 (327)
.++++|.||.||||||++.++++.+. .-.|+.|.....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~ 43 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR 43 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence 47899999999999999999998865 567888877654
No 172
>PRK06620 hypothetical protein; Validated
Probab=97.59 E-value=0.00032 Score=64.17 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=26.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
+.++|.||+|||||+|+..+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 578999999999999999999988776655
No 173
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00014 Score=67.36 Aligned_cols=80 Identities=28% Similarity=0.396 Sum_probs=59.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCc--ccCHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA--NFTATDFR 107 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~--~~s~~~f~ 107 (327)
...-+.+|+||.||||||||..|+-+-+.++.+.+- .|.|-||..-.|..-.+.|+ ++.+-.|.+ -.+..+|.
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I--~~~GedI~~l~~~ERAr~Gi---fLafQ~P~ei~GV~~~~fL 102 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI--LFDGEDILELSPDERARAGI---FLAFQYPVEIPGVTNSDFL 102 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE--EECCcccccCCHhHHHhcCC---EEeecCCccCCCeeHHHHH
Confidence 456789999999999999999999888888888775 68899998765544444554 233334443 57889998
Q ss_pred HHHHHHH
Q 020362 108 NHASLAI 114 (327)
Q Consensus 108 ~~a~~~i 114 (327)
+.|..+.
T Consensus 103 r~a~n~~ 109 (251)
T COG0396 103 RAAMNAR 109 (251)
T ss_pred HHHHHhh
Confidence 8877653
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.58 E-value=7.8e-05 Score=59.82 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=25.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
...++|+||+|||||+++..||..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4689999999999999999999988654
No 175
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.51 E-value=0.00011 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=21.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+|+|+|++||||||++..|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 176
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.47 E-value=0.0019 Score=61.41 Aligned_cols=155 Identities=20% Similarity=0.362 Sum_probs=84.8
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe---CCccch--hc-CcccccCCCChhhhcCccceeccc----cC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIIN---SDKMQV--YK-GLDIVTNKVTEEECHGVPHHLLGI----IE 96 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs---~Ds~qv--y~-gldI~Takp~~~E~~gvphhlid~----~~ 96 (327)
++....++|+|-|+-|||||+||.+||+++|.+... +|.+-+ |- .+.-..++-+. ...+.|+ .|
T Consensus 66 rf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~------~cr~~di~~Fy~d 139 (393)
T KOG3877|consen 66 RFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPA------RCRLPDISMFYKD 139 (393)
T ss_pred hhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCc------ccCchhHHHhccC
Confidence 344556899999999999999999999999865332 222111 11 01111111111 1112222 24
Q ss_pred CCcccCHHHHHHH--------HHHHHHHHHhCCCCeEEEcCch---HHHHHHHcCC--c-------hhhh------cccc
Q 020362 97 PNANFTATDFRNH--------ASLAIESILSRDRLPIIAGGSS---SYIKALVNGD--A-------AEFQ------LRYE 150 (327)
Q Consensus 97 ~~~~~s~~~f~~~--------a~~~i~~i~~~gk~pIvvGGT~---~Y~~all~~~--~-------~~~~------~~~~ 150 (327)
|..+.++ .|+.. -..+++.++..|.-.|+.---+ .+.+|..+.- . .+.+ ..++
T Consensus 140 PS~dlsa-~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~P 218 (393)
T KOG3877|consen 140 PSGDLSA-AMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWP 218 (393)
T ss_pred CCccHHH-HHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCc
Confidence 5444322 22221 1357788888888766543211 2444444321 0 0111 2346
Q ss_pred eEEEEEeCCHHHHHHHhhhhhhh--h--hhccHHHHHHhhhc
Q 020362 151 CFFLWVDVSLPVLHSFVSERVDR--M--VELGLVEEVKQMFD 188 (327)
Q Consensus 151 ~~~i~L~~~~e~L~~RL~~Rv~~--M--l~~Gl~~Ev~~l~~ 188 (327)
-++|+|+.|-+...++|.+|-+. | +..-.+..+++.|+
T Consensus 219 HLViYld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK 260 (393)
T KOG3877|consen 219 HLVIYLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYK 260 (393)
T ss_pred cEEEEEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHH
Confidence 78999999999999999988532 1 22234555555554
No 177
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.44 E-value=0.00064 Score=57.42 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=48.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
..+|.++.+.|+||||||-++.-||+.+=-.-..++-++ +++...+....-.+.+|.+
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~----------------------~f~~~~hFP~~~~v~~Yk~ 107 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVH----------------------QFIATHHFPHNSNVDEYKE 107 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCcee----------------------eecccccCCCchHHHHHHH
Confidence 467788899999999999999999998422223333333 3333333323346788888
Q ss_pred HHHHHHHHHHhCCCC
Q 020362 109 HASLAIESILSRDRL 123 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~ 123 (327)
.....|.+...+-..
T Consensus 108 ~L~~~I~~~v~~C~r 122 (127)
T PF06309_consen 108 QLKSWIRGNVSRCPR 122 (127)
T ss_pred HHHHHHHHHHHhCCc
Confidence 888777776554433
No 178
>PRK09087 hypothetical protein; Validated
Probab=97.42 E-value=0.0013 Score=60.62 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=30.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
.+.++|.||+|||||+|+..+++..++.+|+.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~ 77 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNE 77 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHH
Confidence 4578999999999999999999999988888764
No 179
>PRK13976 thymidylate kinase; Provisional
Probab=97.40 E-value=0.00039 Score=63.42 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.9
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
++|+|-|.-||||||++..|++.+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999874
No 180
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.35 E-value=0.00025 Score=62.61 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=52.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhh-hcCccceeccccCCCcccCHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEE-CHGVPHHLLGIIEPNANFTATDFRNHASL 112 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E-~~gvphhlid~~~~~~~~s~~~f~~~a~~ 112 (327)
+++|+|++|||||++|..++...+..++-. .|+++--.| ++.|..|-... |. .|+..++.....+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~-----------at~~~~d~em~~rI~~H~~~R--~~-~w~t~E~~~~l~~ 66 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYI-----------ATAEAFDDEMAERIARHRKRR--PA-HWRTIETPRDLVS 66 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEE-----------EccCcCCHHHHHHHHHHHHhC--CC-CceEeecHHHHHH
Confidence 478999999999999999998865544433 333332222 23344442221 22 3444455444444
Q ss_pred HHHHHHhCCCCeEEEcCchHHHHHHHc
Q 020362 113 AIESILSRDRLPIIAGGSSSYIKALVN 139 (327)
Q Consensus 113 ~i~~i~~~gk~pIvvGGT~~Y~~all~ 139 (327)
.+++.. +.-.|++++-..|+..++.
T Consensus 67 ~l~~~~--~~~~VLIDclt~~~~n~l~ 91 (169)
T cd00544 67 ALKELD--PGDVVLIDCLTLWVTNLLF 91 (169)
T ss_pred HHHhcC--CCCEEEEEcHhHHHHHhCC
Confidence 554332 3346888988887766653
No 181
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.32 E-value=0.00016 Score=68.56 Aligned_cols=37 Identities=22% Similarity=0.533 Sum_probs=31.9
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccchhc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQVYK 70 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~qvy~ 70 (327)
+|.|+|.|||||||++..|++.|+ ..+|+.|+++.|.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~ 42 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYE 42 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCC
Confidence 589999999999999999998774 5699999987653
No 182
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.32 E-value=0.0002 Score=59.96 Aligned_cols=27 Identities=41% Similarity=0.666 Sum_probs=24.6
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
|+|.||+|+|||+|+..||+.++.+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 789999999999999999999987653
No 183
>PRK13974 thymidylate kinase; Provisional
Probab=97.30 E-value=0.00093 Score=60.68 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=24.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
..+|+|.|+.||||||++..|++.+.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999885
No 184
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0041 Score=63.52 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=25.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
+..++++||.|+||||+|+.||+.++.+
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4578999999999999999999998864
No 185
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.28 E-value=0.00031 Score=57.07 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF---PAEIINSDK 65 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds 65 (327)
..+.++|.||+|||||+++..++..+ +..++..|.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 45689999999999999999999987 555554443
No 186
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.27 E-value=0.00026 Score=71.00 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV 68 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv 68 (327)
.|+.|+++||||||||++|..||+.++.+++..|...+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 45789999999999999999999999999999997543
No 187
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.24 E-value=0.00025 Score=71.07 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=33.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+..|+++||||||||+||..||+.++.+++..|...
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~ 85 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchh
Confidence 578999999999999999999999999999999743
No 188
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.00072 Score=67.01 Aligned_cols=186 Identities=18% Similarity=0.173 Sum_probs=95.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCc----ccccCCCChhhhcC---ccceeccccCCCcccCH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGL----DIVTNKVTEEECHG---VPHHLLGIIEPNANFTA 103 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gl----dI~Takp~~~E~~g---vphhlid~~~~~~~~s~ 103 (327)
...-.++.||+||||||||.-||..++.+++-....- .|. .|.-. .....+ -.--++|.+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--~gvkdlr~i~e~---a~~~~~~gr~tiLflDEI-------- 113 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--SGVKDLREIIEE---ARKNRLLGRRTILFLDEI-------- 113 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--ccHHHHHHHHHH---HHHHHhcCCceEEEEehh--------
Confidence 4456889999999999999999999988765433211 110 00000 000011 111234433
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEcCchH--HHHHHHcCCchhhhcccceEEEEE-eCCHHHHHHHhhhhhhhhhhccHH
Q 020362 104 TDFRNHASLAIESILSRDRLPIIAGGSSS--YIKALVNGDAAEFQLRYECFFLWV-DVSLPVLHSFVSERVDRMVELGLV 180 (327)
Q Consensus 104 ~~f~~~a~~~i~~i~~~gk~pIvvGGT~~--Y~~all~~~~~~~~~~~~~~~i~L-~~~~e~L~~RL~~Rv~~Ml~~Gl~ 180 (327)
..|.+.-.+.+-...+.|. .|++|.|.- |+ .+++.++.|. .++.| ..+.+.+.+.|. |.-.-.+.|+-
T Consensus 114 HRfnK~QQD~lLp~vE~G~-iilIGATTENPsF-----~ln~ALlSR~--~vf~lk~L~~~di~~~l~-ra~~~~~rgl~ 184 (436)
T COG2256 114 HRFNKAQQDALLPHVENGT-IILIGATTENPSF-----ELNPALLSRA--RVFELKPLSSEDIKKLLK-RALLDEERGLG 184 (436)
T ss_pred hhcChhhhhhhhhhhcCCe-EEEEeccCCCCCe-----eecHHHhhhh--heeeeecCCHHHHHHHHH-HHHhhhhcCCC
Confidence 2233333333444445454 588888761 10 1123344453 34444 456777777665 32222344544
Q ss_pred -------HHHHhhhcCCCCCcch-hhhhccHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020362 181 -------EEVKQMFDPQADYSRG-IRRAIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKI 247 (327)
Q Consensus 181 -------~Ev~~l~~~~~~~~~g-~~qaIGykE~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~ 247 (327)
+|+..++-. ...| .+.++-+=|+.-.+...... -.++..-+-++.+..+|-|.+-.+.
T Consensus 185 ~~~~~i~~~a~~~l~~---~s~GD~R~aLN~LE~~~~~~~~~~~------~~~~~l~~~l~~~~~~~Dk~gD~hY 250 (436)
T COG2256 185 GQIIVLDEEALDYLVR---LSNGDARRALNLLELAALSAEPDEV------LILELLEEILQRRSARFDKDGDAHY 250 (436)
T ss_pred cccccCCHHHHHHHHH---hcCchHHHHHHHHHHHHHhcCCCcc------cCHHHHHHHHhhhhhccCCCcchHH
Confidence 667776643 2333 66677766776655433210 0033444444555666666655553
No 189
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00036 Score=67.47 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=32.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+..|.++||||||||-||..||+.++.++-=+|.-.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 467999999999999999999999999988888755
No 190
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.0028 Score=56.20 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=72.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC-CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF-PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
.++++|+|.+|+||||+...+.+.+ .-.++|.-.+-.- + ..+...+.|| |.+. ..........-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle----~------A~k~glve~r--D~~R---klp~e~Q~~lq 68 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLE----I------AKKKGLVEHR--DEMR---KLPLENQRELQ 68 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHH----H------HHHhCCcccH--HHHh---cCCHHHHHHHH
Confidence 5899999999999999999999888 6667774332211 1 1122233332 1111 22334444444
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHH---HHcCCchhhh-cccceEEEEEeCCHH-HHHHHhhhhhhhhhhccHHHHHHh
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKA---LVNGDAAEFQ-LRYECFFLWVDVSLP-VLHSFVSERVDRMVELGLVEEVKQ 185 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~a---ll~~~~~~~~-~~~~~~~i~L~~~~e-~L~~RL~~Rv~~Ml~~Gl~~Ev~~ 185 (327)
..+.+.|.+.+.- ||+++ +.-++. .+-|+..+.- .--+..|+.+.+|++ +|.+|+.. -.++-+-+=.+|+++
T Consensus 69 ~~Aa~rI~~~~~~-iivDt-H~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D-~~r~Rd~es~e~i~e 145 (189)
T COG2019 69 AEAAKRIAEMALE-IIVDT-HATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRD-SRRDRDVESVEEIRE 145 (189)
T ss_pred HHHHHHHHHhhhc-eEEec-cceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcc-cccccccccHHHHHH
Confidence 4445555544443 55553 321111 1223321211 112345677888775 46666654 344445555666665
Q ss_pred hhc
Q 020362 186 MFD 188 (327)
Q Consensus 186 l~~ 188 (327)
..+
T Consensus 146 Hqe 148 (189)
T COG2019 146 HQE 148 (189)
T ss_pred HHH
Confidence 543
No 191
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.15 E-value=0.00038 Score=69.52 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
..+.|+|+|++|||||||+..||+.+|...+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 45789999999999999999999999876544
No 192
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0015 Score=63.28 Aligned_cols=28 Identities=29% Similarity=0.628 Sum_probs=25.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.++|.+.||+|||||+|+.+||+++...
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 5799999999999999999999998543
No 193
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.13 E-value=0.0042 Score=56.47 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~ 66 (327)
....++|+|++|||||+|+..++... ...+++++..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 45689999999999999999999865 4556665543
No 194
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.11 E-value=0.00049 Score=60.85 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=28.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC----eEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA----EIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~----eiIs~Ds 65 (327)
...+.++||||+|||.+|..||+.+.. .++..|.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~ 40 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDM 40 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhh
Confidence 457899999999999999999999985 6666653
No 195
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.10 E-value=0.0011 Score=66.67 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF---P--AEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~Ds~q 67 (327)
.++.+|.++|++||||||++..||..+ | .-+|++|..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 347899999999999999999999655 3 4689999754
No 196
>CHL00181 cbbX CbbX; Provisional
Probab=97.09 E-value=0.0032 Score=60.11 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...+++.||+|||||++|..+|+.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999998864
No 197
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.0018 Score=59.17 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcc-cccCCCChhhh-cCccceeccc---cCCCc--ccCH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLD-IVTNKVTEEEC-HGVPHHLLGI---IEPNA--NFTA 103 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gld-I~Takp~~~E~-~gvphhlid~---~~~~~--~~s~ 103 (327)
+...|+|-|.=||||||++..|++.+... |++ +.|.-|+-... +.+.+.+++. .++.. -.-.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~-----------g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfa 70 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEER-----------GIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFA 70 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHH
Confidence 46799999999999999999999987432 211 22333332110 1122323321 22211 1112
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEcC---chHHHHHHHcCCchhh-------hc--ccceEEEEEeCCHHHHHHHhhhhh
Q 020362 104 TDFRNHASLAIESILSRDRLPIIAGG---SSSYIKALVNGDAAEF-------QL--RYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 104 ~~f~~~a~~~i~~i~~~gk~pIvvGG---T~~Y~~all~~~~~~~-------~~--~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
++..+...+.|.....+|++ ||++- |.+..+....+.+.++ .. ..+.+.|+|++|+++-.+|+.+|-
T Consensus 71 adR~~h~~~~i~pal~~g~v-VI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~ 149 (208)
T COG0125 71 ADRAQHLEEVIKPALKEGKV-VICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRG 149 (208)
T ss_pred HHHHHHHHHHHHHhhcCCCE-EEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 33334444555555666765 56542 2222233333332111 11 145678999999999999999996
Q ss_pred hh
Q 020362 172 DR 173 (327)
Q Consensus 172 ~~ 173 (327)
..
T Consensus 150 ~~ 151 (208)
T COG0125 150 EL 151 (208)
T ss_pred Cc
Confidence 53
No 198
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.08 E-value=0.00048 Score=59.47 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=21.7
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
|+|+|+.|||||||+..|+++ |..+|
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 899999999999999999999 88877
No 199
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.08 E-value=0.0037 Score=56.86 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=30.8
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+|.++|-+||||||++..+- .+|..+|++|.+-
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~va 35 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVA 35 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHH
Confidence 478999999999999999886 8899999999874
No 200
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.07 E-value=0.00097 Score=61.71 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=24.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
..-+++.||+|+||||||.-+|+.++..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 457899999999999999999999987653
No 201
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.0088 Score=61.60 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||.|+||||+|+.+|+.++.+
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 35689999999999999999999999764
No 202
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.06 E-value=0.001 Score=68.16 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=35.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK 70 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~ 70 (327)
+.++-|++.||+|||||.+|..+|..++..++..|.-.++.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~ 297 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG 297 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc
Confidence 45678999999999999999999999999998887654443
No 203
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.05 E-value=0.0022 Score=67.66 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=30.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
.+..|+..++||+|-||||||+-+|++-|..+|.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvE 356 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVE 356 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEE
Confidence 4567899999999999999999999999987775
No 204
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00051 Score=66.86 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
-.||.|+.+||||+|||.+|++||+-.|+++|-...
T Consensus 48 V~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEA 83 (444)
T COG1220 48 VTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEA 83 (444)
T ss_pred cCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 368999999999999999999999999998886443
No 205
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.04 E-value=0.00052 Score=68.18 Aligned_cols=37 Identities=32% Similarity=0.611 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC-------CeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP-------AEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~-------~eiIs~Ds~q 67 (327)
++++|+++||||+||||.-..||.++. .-+|..|.++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 378999999999999999999998875 4589999765
No 206
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.03 E-value=0.00074 Score=64.25 Aligned_cols=37 Identities=32% Similarity=0.572 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC----C---CeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF----P---AEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~----~---~eiIs~Ds~ 66 (327)
..+.+|+|+|||||||||++..||..+ | .-+|.+|..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 457899999999999999999998755 2 247788864
No 207
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.02 E-value=0.00054 Score=74.37 Aligned_cols=38 Identities=29% Similarity=0.555 Sum_probs=34.7
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGL 72 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gl 72 (327)
.+|+|.||+||||||+|..||++++..+|+++.| ||.+
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~--yRa~ 72 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSF--YRAF 72 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH--HHHH
Confidence 6899999999999999999999999999999985 6643
No 208
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.02 E-value=0.0034 Score=57.49 Aligned_cols=133 Identities=9% Similarity=0.158 Sum_probs=65.1
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcCc-cccc-CCCC--hhhhcCccceeccccCCCcccCH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKGL-DIVT-NKVT--EEECHGVPHHLLGIIEPNANFTA 103 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~gl-dI~T-akp~--~~E~~gvphhlid~~~~~~~~s~ 103 (327)
..++|.||+|+|||-|..+++..+ +..++-.+...+.+.+ +... ++.. .+.....+--++|-++.- -+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l--~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFL--AGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGG--TTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhh--cCc
Confidence 357899999999999999997653 3344444333322211 0000 0000 012233344444444322 233
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccc-eEEEEEeCCHHHHHHHhhhh
Q 020362 104 TDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE-CFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 104 ~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~-~~~i~L~~~~e~L~~RL~~R 170 (327)
..+.+..-..++.+..+|+..|+++...- .. +.+..+.++.|+. ...+.+..+.+..+.+|-++
T Consensus 113 ~~~q~~lf~l~n~~~~~~k~li~ts~~~P--~~-l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 113 QRTQEELFHLFNRLIESGKQLILTSDRPP--SE-LSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEESS-T--TT-TTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCCeEEEEeCCCC--cc-ccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 45666677788888888886566553221 01 1222233444432 45666777666555555443
No 209
>PRK07933 thymidylate kinase; Validated
Probab=97.00 E-value=0.002 Score=58.77 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=23.1
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
++|+|-|+-||||||++..|++.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999884
No 210
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.99 E-value=0.00068 Score=58.86 Aligned_cols=39 Identities=31% Similarity=0.546 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK 70 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~ 70 (327)
...-|+|+|++|+||||+|.+|.++ |..+|+=|...+.+
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v~v~~ 51 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADDRVVVKR 51 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEEEEEE
Confidence 3578999999999999999999977 78888877766654
No 211
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.98 E-value=0.016 Score=58.51 Aligned_cols=147 Identities=18% Similarity=0.261 Sum_probs=71.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC-----CCe--EEeCCccc-hh-cCcccccCCCChhhh----cCccceeccccCCCc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF-----PAE--IINSDKMQ-VY-KGLDIVTNKVTEEEC----HGVPHHLLGIIEPNA 99 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~-----~~e--iIs~Ds~q-vy-~gldI~Takp~~~E~----~gvphhlid~~~~~~ 99 (327)
..++|.||+|+|||.|+..++..+ +.. .++++.+. -+ ..+. +.+.++. ..+.--++|.++...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~dlLiiDDi~~l~ 224 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALR----NNTMEEFKEKYRSVDVLLIDDIQFLA 224 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHH----cCcHHHHHHHHhcCCEEEEehhhhhc
Confidence 468999999999999999999875 333 44554321 11 1110 0011111 122223444443211
Q ss_pred ccCHHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccc-eEEEEEeCC-HHHHHHHhhhhhhhhhhc
Q 020362 100 NFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE-CFFLWVDVS-LPVLHSFVSERVDRMVEL 177 (327)
Q Consensus 100 ~~s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~-~~~i~L~~~-~e~L~~RL~~Rv~~Ml~~ 177 (327)
......+.....++.+.++++. ||+.++... .. +.++++.++.|+. ...+.+..+ .+.+.+-|.++.... .-
T Consensus 225 --~~~~~~~~l~~~~n~l~~~~~~-iiits~~~p-~~-l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~-~~ 298 (450)
T PRK00149 225 --GKERTQEEFFHTFNALHEAGKQ-IVLTSDRPP-KE-LPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE-GI 298 (450)
T ss_pred --CCHHHHHHHHHHHHHHHHCCCc-EEEECCCCH-HH-HHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc-CC
Confidence 1111233344556667776764 555544322 11 1222234455553 245666554 455555555555431 11
Q ss_pred cHHHHHHhhhcC
Q 020362 178 GLVEEVKQMFDP 189 (327)
Q Consensus 178 Gl~~Ev~~l~~~ 189 (327)
-+-+|+..++..
T Consensus 299 ~l~~e~l~~ia~ 310 (450)
T PRK00149 299 DLPDEVLEFIAK 310 (450)
T ss_pred CCCHHHHHHHHc
Confidence 245676666644
No 212
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.97 E-value=0.0072 Score=60.41 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
....++|.||+|||||++|..+|+.++..++..+
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3457888999999999999999999887766543
No 213
>PLN02796 D-glycerate 3-kinase
Probab=96.94 E-value=0.00098 Score=65.28 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~q 67 (327)
.++.+|.|+|++|||||||+..|+..+. ...|+.|.+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 3567899999999999999999998874 3567888754
No 214
>PRK10867 signal recognition particle protein; Provisional
Probab=96.93 E-value=0.0019 Score=65.13 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC----C--CeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF----P--AEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~----~--~eiIs~Ds~q 67 (327)
.+|.+|+++|++||||||++..||..+ | .-+|++|..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 447899999999999999888888644 2 3589999654
No 215
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.93 E-value=0.00076 Score=67.64 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=31.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
...+++.||||||||++|..||+.++.+++..|.-.
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 457899999999999999999999999888777643
No 216
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.011 Score=64.32 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..+++.||.|+|||++|+.||+.++++
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 34578999999999999999999999864
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.92 E-value=0.0007 Score=66.62 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.+.++++|+||+||||||||..|++.++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999999885
No 218
>PRK05642 DNA replication initiation factor; Validated
Probab=96.90 E-value=0.0065 Score=56.11 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=64.6
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
..++|.|++|||||.|+..++..+ ..-+++++.+.-+ .-++ .+....++.-++|-++... ....+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-~~~~------~~~~~~~d~LiiDDi~~~~--~~~~~~ 116 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-GPEL------LDNLEQYELVCLDDLDVIA--GKADWE 116 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-hHHH------HHhhhhCCEEEEechhhhc--CChHHH
Confidence 578999999999999999987543 3445665543211 0000 0111223333455443221 113445
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccc-eEEEEEeC-CHHHHHHHhhhhh
Q 020362 108 NHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE-CFFLWVDV-SLPVLHSFVSERV 171 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~-~~~i~L~~-~~e~L~~RL~~Rv 171 (327)
+.....++.+..+|+ ++|++++..-- -+....+.++.|+. ..++-++. +.+.+.+-+..|.
T Consensus 117 ~~Lf~l~n~~~~~g~-~ilits~~~p~--~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 117 EALFHLFNRLRDSGR-RLLLAASKSPR--ELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHHHHHHHHHhcCC-EEEEeCCCCHH--HcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 555667777766665 56666653211 11211234455543 23444665 4555555555444
No 219
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0032 Score=62.37 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=31.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC----C---CeEEeCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF----P---AEIINSDKMQ 67 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~----~---~eiIs~Ds~q 67 (327)
.....+++++||||+||||++..||..+ | .-+|.+|.++
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 4556899999999999999999999653 3 2478888763
No 220
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0079 Score=59.17 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.+..+++.||+|+||||+|..+|+.+++
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3567899999999999999999999875
No 221
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.86 E-value=0.00094 Score=59.52 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=32.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc-hhcCcccccC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ-VYKGLDIVTN 77 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q-vy~gldI~Ta 77 (327)
..+.-.|+|+||+|||||+|-..+|. .||-|+=. .|+|-++.|.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~-----Lisp~~G~l~f~Ge~vs~~ 70 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVAS-----LISPTSGTLLFEGEDVSTL 70 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHh-----ccCCCCceEEEcCcccccc
Confidence 45567899999999999999999985 45656555 4456555543
No 222
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.85 E-value=0.0013 Score=56.06 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe-EEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE-IINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e-iIs~Ds~q 67 (327)
+...+|++.|+.|+||||+++.+++.+|.. .|++-.+-
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~ 58 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFT 58 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCee
Confidence 446799999999999999999999999853 45555543
No 223
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.85 E-value=0.00078 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
....++|.|++|+|||+++..+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999986
No 224
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0028 Score=65.90 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGL 72 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gl 72 (327)
.++=|++.||+|||||.||.++|.+++.++++.-.=-+-.|+
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 456799999999999999999999999888775544444444
No 225
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.0012 Score=65.75 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC---------CeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP---------AEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~---------~eiIs~Ds~q 67 (327)
..+.+|+++||||+||||.+..||..+. .-+|++|..+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 3467999999999999999999997652 3367777543
No 226
>PRK09169 hypothetical protein; Validated
Probab=96.81 E-value=0.0017 Score=75.14 Aligned_cols=114 Identities=11% Similarity=-0.043 Sum_probs=75.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc-CcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
...|+++|.+|+||||++..||+.++..++.+|....-+ |+.|.. ..+ .. +.|++.+
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~r----IFa----------------~e--G~FRe~E 2167 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIAR----IQA----------------LR--GLSPEQA 2167 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHH----HHH----------------hc--CchHHHH
Confidence 457999999999999999999999999999988755332 222211 000 11 1588999
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhh
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRM 174 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~M 174 (327)
...|.++.. ....|=.||-......... ...-...+||+..+.+.+.+|+....+..
T Consensus 2168 aa~V~Dllr-~~vVLSTGGGav~~~enr~------~L~~~GlvV~L~an~~tl~~Rty~g~NRP 2224 (2316)
T PRK09169 2168 AARVRDALR-WEVVLPAEGFGAAVEQARQ------ALGAKGLRVMRINNGFAAPDTTYAGLNVN 2224 (2316)
T ss_pred HHHHHHHhc-CCeEEeCCCCcccCHHHHH------HHHHCCEEEEEECCHHHHHHHhccCCCCc
Confidence 999988874 4333334553322211111 01123569999999999999997765543
No 227
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0076 Score=61.55 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.3
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
+..++++||+|+||||+|..+|+.++.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456899999999999999999999875
No 228
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.80 E-value=0.0013 Score=66.09 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=30.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+..|+|.||||||||++|..||+.++..++..|.-
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~ 150 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADAT 150 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechh
Confidence 35799999999999999999999998887766643
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0013 Score=65.63 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds 65 (327)
.++.+|+|+||+||||||++..||..+- .-+|++|.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3467999999999999999999997652 23566664
No 230
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.79 E-value=0.001 Score=59.84 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
-+|+|+|||||||||+...|+..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3799999999999999999887764
No 231
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.79 E-value=0.031 Score=58.69 Aligned_cols=146 Identities=12% Similarity=0.139 Sum_probs=68.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC-----CC--eEEeCCccc-hh-cCcccccCCCChhhh----cCccceeccccCCCc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF-----PA--EIINSDKMQ-VY-KGLDIVTNKVTEEEC----HGVPHHLLGIIEPNA 99 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~-----~~--eiIs~Ds~q-vy-~gldI~Takp~~~E~----~gvphhlid~~~~~~ 99 (327)
..++|+|++|+|||-|+..++..+ +. -+++++.+. -| ..+ ..+ ..++. ..+.--++|-++...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al--~~~--~~~~f~~~y~~~DLLlIDDIq~l~ 390 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSI--RDG--KGDSFRRRYREMDILLVDDIQFLE 390 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHH--Hhc--cHHHHHHHhhcCCEEEEehhcccc
Confidence 348999999999999999998754 33 355554322 11 111 000 01111 122223444443221
Q ss_pred ccCHHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccc-eEEEEEeCCHHHHHHHhhhhhhhhhhcc
Q 020362 100 NFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE-CFFLWVDVSLPVLHSFVSERVDRMVELG 178 (327)
Q Consensus 100 ~~s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~-~~~i~L~~~~e~L~~RL~~Rv~~Ml~~G 178 (327)
......+.....++.+..+++..||++- ...+.+ ..+.+.++.|+. .+++.|..+..+.+..|-++.- -..|
T Consensus 391 --gke~tqeeLF~l~N~l~e~gk~IIITSd--~~P~eL-~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka--~~r~ 463 (617)
T PRK14086 391 --DKESTQEEFFHTFNTLHNANKQIVLSSD--RPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA--VQEQ 463 (617)
T ss_pred --CCHHHHHHHHHHHHHHHhcCCCEEEecC--CChHhh-hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH--HhcC
Confidence 1122233444567777777775455432 222222 222233445543 3455666655444443332221 1123
Q ss_pred --HHHHHHhhhcC
Q 020362 179 --LVEEVKQMFDP 189 (327)
Q Consensus 179 --l~~Ev~~l~~~ 189 (327)
+-+||..++-.
T Consensus 464 l~l~~eVi~yLa~ 476 (617)
T PRK14086 464 LNAPPEVLEFIAS 476 (617)
T ss_pred CCCCHHHHHHHHH
Confidence 34677666643
No 232
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.76 E-value=0.0028 Score=63.95 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC----C--CeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF----P--AEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~----~--~eiIs~Ds~q 67 (327)
.+|.+++++|++||||||++..||..+ | .-+|++|..+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 357899999999999999999998763 2 3489999654
No 233
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.75 E-value=0.0016 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLA 53 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA 53 (327)
.....++|.||+|||||||+..+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 445799999999999999999987
No 234
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.74 E-value=0.0014 Score=61.44 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=26.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
..-|+|.||+|||||++|..||+.+|.+++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 346678999999999999999999887755
No 235
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.73 E-value=0.0074 Score=57.46 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.-+++.||+|||||++|..+|+.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999998888765
No 236
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=96.71 E-value=0.0029 Score=55.74 Aligned_cols=24 Identities=13% Similarity=0.121 Sum_probs=20.8
Q ss_pred cceEEEEEeCCHHHHHHHhhhhhh
Q 020362 149 YECFFLWVDVSLPVLHSFVSERVD 172 (327)
Q Consensus 149 ~~~~~i~L~~~~e~L~~RL~~Rv~ 172 (327)
.+.+.|+|++++++..+|+..|-.
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSS
T ss_pred CCCEEEEEecCHHHHHHHHHcCCc
Confidence 456789999999999999999976
No 237
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.71 E-value=0.0016 Score=64.40 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=37.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKG 71 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~g 71 (327)
.+.|+.+.|.||+|||||.+|..+|+.+|+++|..+.=.++.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 3567889999999999999999999999999998877665543
No 238
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.0012 Score=66.29 Aligned_cols=37 Identities=32% Similarity=0.628 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC----C--CeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF----P--AEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~----~--~eiIs~Ds~q 67 (327)
++.+++|+||+||||||++..||..+ | .-++++|..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 46789999999999999999999754 2 3467788644
No 239
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0042 Score=54.76 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+...-|+|+|++|+||||++..++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345679999999999999999999765
No 240
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=96.70 E-value=0.0084 Score=55.36 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=27.6
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCc
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDK 65 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds 65 (327)
....+.+|+++|.+|.|||++|..|++-++ ..|.|+..
T Consensus 8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~ 50 (222)
T PF01591_consen 8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGD 50 (222)
T ss_dssp -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeeccc
Confidence 345677999999999999999999998764 45666554
No 241
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.70 E-value=0.0018 Score=66.86 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
..++++++||+||||||....||+.+|.+|+.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 35699999999999999999999999987764
No 242
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.70 E-value=0.0017 Score=61.56 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++++|+++||+|+||||++..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456899999999999999999999765
No 243
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.70 E-value=0.0015 Score=64.94 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
..++-|+|.||+|||||++|..+|..++..++..+.-
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 4567799999999999999999999999887765543
No 244
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.69 E-value=0.002 Score=64.71 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~q 67 (327)
+|.+|.|.|++|||||||+..|...+. ..+|+.|.+-
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 577899999999999999999987662 4578888853
No 245
>PTZ00202 tuzin; Provisional
Probab=96.67 E-value=0.0033 Score=63.62 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=48.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
.+.+++|+|+.|+|||+|++.++..++.. |.|-+.. + .+|.- ..++..+.........+..+..
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~-------qL~vNpr-g-----~eElL---r~LL~ALGV~p~~~k~dLLrqI 348 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMP-------AVFVDVR-G-----TEDTL---RSVVKALGVPNVEACGDLLDFI 348 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCce-------EEEECCC-C-----HHHHH---HHHHHHcCCCCcccHHHHHHHH
Confidence 35699999999999999999999887732 3343322 1 12211 1122222211223334444444
Q ss_pred HHHHHHHHhC-CCCeEEE----cCch
Q 020362 111 SLAIESILSR-DRLPIIA----GGSS 131 (327)
Q Consensus 111 ~~~i~~i~~~-gk~pIvv----GGT~ 131 (327)
.+.+.+.... |+.|||+ .|+.
T Consensus 349 qeaLl~~~~e~GrtPVLII~lreg~~ 374 (550)
T PTZ00202 349 SEACRRAKKMNGETPLLVLKLREGSS 374 (550)
T ss_pred HHHHHHHHHhCCCCEEEEEEecCCCc
Confidence 4555555555 8998876 5655
No 246
>PRK04195 replication factor C large subunit; Provisional
Probab=96.66 E-value=0.0019 Score=65.80 Aligned_cols=33 Identities=33% Similarity=0.566 Sum_probs=29.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
++.++|.||+|+|||++|..||+.++.+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 678999999999999999999999998877654
No 247
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.66 E-value=0.0023 Score=55.68 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=27.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF---P--AEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~Ds~ 66 (327)
++++.|++|||||+++..+|..+ | .-+|++|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 68899999999999999998765 3 346888864
No 248
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.64 E-value=0.0019 Score=62.67 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC---CC--eEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF---PA--EIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~---~~--eiIs~Ds 65 (327)
.++.+|+++||+|+||||++..||..+ +. -++.+|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 457899999999999999999999765 22 3455664
No 249
>PRK08727 hypothetical protein; Validated
Probab=96.64 E-value=0.014 Score=53.76 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=20.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...++|+|++|||||.|+..++..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999998654
No 250
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.63 E-value=0.019 Score=56.41 Aligned_cols=109 Identities=24% Similarity=0.279 Sum_probs=64.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
.....+++.|+||||||++...|++. +..+|+.-+..-|+|=..|- ++. ..-+-.+|...
T Consensus 139 ~~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehrGS~fG~---------------~~~----~qpsQ~~Fe~~ 198 (345)
T PRK11784 139 AQFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHRGSSFGR---------------LGG----PQPSQKDFENL 198 (345)
T ss_pred ccCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhccccccC---------------CCC----CCcchHHHHHH
Confidence 34467889999999999999999866 67799888888887632211 011 11255678777
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHH------HHHHcCCchhhhcccceEEEEEeCCHHHHHHHh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYI------KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFV 167 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~------~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL 167 (327)
....+..... ..||++-+=+..+ ++|++.+ + ....|++++|.+.--+||
T Consensus 199 l~~~l~~~~~--~~~i~vE~Es~~IG~~~lP~~l~~~m----~---~~~~v~i~~~~e~Rv~~l 253 (345)
T PRK11784 199 LAEALLKLDP--ARPIVVEDESRRIGRVHLPEALYEAM----Q---QAPIVVVEAPLEERVERL 253 (345)
T ss_pred HHHHHHcCCC--CCeEEEEeccccccCccCCHHHHHHH----h---hCCEEEEECCHHHHHHHH
Confidence 6666654432 3456653322111 1121110 1 124678899866555554
No 251
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.62 E-value=0.0022 Score=62.85 Aligned_cols=36 Identities=33% Similarity=0.346 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.++-++|.||+|||||++|..+|..++..++..+.-
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 456799999999999999999999999887766543
No 252
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.60 E-value=0.0022 Score=63.25 Aligned_cols=40 Identities=23% Similarity=0.542 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC--CeEEeCCccchhc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP--AEIINSDKMQVYK 70 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~--~eiIs~Ds~qvy~ 70 (327)
..+.|.|.||+|||||+||..+|+.+| .++++...-.+|.
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 468999999999999999999999997 4555544444443
No 253
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.60 E-value=0.0024 Score=60.56 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeE
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEI 60 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ei 60 (327)
.+..++|.||+|+|||+|+..+|..++..+
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345688999999999999999999987653
No 254
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.58 E-value=0.04 Score=58.67 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||+|+|||++|..||+.++++
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 35689999999999999999999998764
No 255
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.043 Score=57.50 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||+|+||||+|..||+.++++
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 35678999999999999999999998764
No 256
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.57 E-value=0.013 Score=58.35 Aligned_cols=89 Identities=24% Similarity=0.265 Sum_probs=62.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccchhcCc------ccccCCC-ChhhhcCccceeccccCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQVYKGL------DIVTNKV-TEEECHGVPHHLLGIIEP 97 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~qvy~gl------dI~Takp-~~~E~~gvphhlid~~~~ 97 (327)
....++.|+||..||||||+.-||.++. .-||++|-=|--=+. ....+.+ ...+..-..+.+++-.+|
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP 150 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISP 150 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccCC
Confidence 3567999999999999999999998874 469999988722111 1122222 256666677788888888
Q ss_pred CcccCHHHHHHHHHHHHHHHHhC
Q 020362 98 NANFTATDFRNHASLAIESILSR 120 (327)
Q Consensus 98 ~~~~s~~~f~~~a~~~i~~i~~~ 120 (327)
... ...|...+.++++...+.
T Consensus 151 ~~~--~~~~i~~v~rL~~~a~~~ 171 (398)
T COG1341 151 QGF--PGRYIAGVARLVDLAKKE 171 (398)
T ss_pred CCC--hHHHHHHHHHHHHHhhcc
Confidence 753 466777777777666554
No 257
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.0025 Score=63.44 Aligned_cols=37 Identities=22% Similarity=0.509 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~ 66 (327)
..+++++|+||+||||||++..||..+ ..-+|++|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 457899999999999999999999755 2346777754
No 258
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.55 E-value=0.0094 Score=57.10 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~ 66 (327)
....+|.|+|++|||||||...|+..+ ...+|+.|.-
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457899999999999999999988754 3457888853
No 259
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.019 Score=60.76 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.+..++++||.|+||||+|..||+.+++
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999999999875
No 260
>PF13245 AAA_19: Part of AAA domain
Probab=96.54 E-value=0.0021 Score=49.30 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..++++|.||+|||||+++..++..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35788899999999997776666553
No 261
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.54 E-value=0.016 Score=55.30 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=21.6
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
++|+|+|.+|+|||+-...| +.+|.-.|
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cv 29 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCV 29 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEE
Confidence 58999999999999866655 66665443
No 262
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=96.54 E-value=0.0025 Score=56.44 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK 70 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~ 70 (327)
...=|+|+|++|+|||++|.+|.++ |..+|+=|.+.+.+
T Consensus 17 ~G~GVLi~G~SG~GKS~lAl~Li~r-Gh~lvaDD~v~i~~ 55 (171)
T PF07475_consen 17 GGVGVLITGPSGIGKSELALELIKR-GHRLVADDRVEIRR 55 (171)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-T-EEEESSEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC-CCeEEeCCEEEEEE
Confidence 3567899999999999999999987 78999988888766
No 263
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.54 E-value=0.014 Score=59.27 Aligned_cols=147 Identities=12% Similarity=0.208 Sum_probs=68.6
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC---CCeE--EeCCccc-hhcCcccccCCCChhh----hcCccceeccccCCCcccC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF---PAEI--INSDKMQ-VYKGLDIVTNKVTEEE----CHGVPHHLLGIIEPNANFT 102 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~---~~ei--Is~Ds~q-vy~gldI~Takp~~~E----~~gvphhlid~~~~~~~~s 102 (327)
.-++|.||+|+|||.|+..++..+ +..+ ++++.+- .+. +.... ...++ ...++-.++|.++....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~--~~l~~-~~~~~f~~~~~~~dvLiIDDiq~l~~-- 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLV--SAIRS-GEMQRFRQFYRNVDALFIEDIEVFSG-- 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHH--HHHhc-chHHHHHHHcccCCEEEEcchhhhcC--
Confidence 457899999999999999999754 3443 4433221 000 00000 01111 11223334443322110
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccc-eEEEEEeC-CHHHHHHHhhhhhhhhhhccHH
Q 020362 103 ATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYE-CFFLWVDV-SLPVLHSFVSERVDRMVELGLV 180 (327)
Q Consensus 103 ~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~-~~~i~L~~-~~e~L~~RL~~Rv~~Ml~~Gl~ 180 (327)
.....+.....++.+...|+ +||..++..- .. +.+..+.++.|+. .+.+-+.. +.+.+..-|.++.+.. .-.+-
T Consensus 217 k~~~qeelf~l~N~l~~~~k-~IIlts~~~p-~~-l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~-~~~l~ 292 (445)
T PRK12422 217 KGATQEEFFHTFNSLHTEGK-LIVISSTCAP-QD-LKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL-SIRIE 292 (445)
T ss_pred ChhhHHHHHHHHHHHHHCCC-cEEEecCCCH-HH-HhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc-CCCCC
Confidence 01112233345555566666 4555554321 11 1122234455553 34555654 4566665665555442 12255
Q ss_pred HHHHhhhc
Q 020362 181 EEVKQMFD 188 (327)
Q Consensus 181 ~Ev~~l~~ 188 (327)
+|+..++-
T Consensus 293 ~evl~~la 300 (445)
T PRK12422 293 ETALDFLI 300 (445)
T ss_pred HHHHHHHH
Confidence 67776553
No 264
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.53 E-value=0.0021 Score=62.54 Aligned_cols=30 Identities=37% Similarity=0.476 Sum_probs=27.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
.+-|+|.||+|||||+++..||+.+|..++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 456999999999999999999999998765
No 265
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.53 E-value=0.014 Score=59.00 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.-++|.||+|+|||.|+..++..+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Confidence 359999999999999999998764
No 266
>PHA02624 large T antigen; Provisional
Probab=96.52 E-value=0.003 Score=65.96 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeC----CccchhcC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINS----DKMQVYKG 71 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~----Ds~qvy~g 71 (327)
+++..+++.||+|||||+++..|++.++|.++|. |..|..-|
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~ 474 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELG 474 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhh
Confidence 5667999999999999999999999999988885 55555443
No 267
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.041 Score=58.04 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
..+..++++||.|+||||+|+.||+.+++
T Consensus 36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 36 RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567899999999999999999999875
No 268
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.50 E-value=0.015 Score=57.89 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=21.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..++|.||+|+|||.|+..++..+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999998765
No 269
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.49 E-value=0.0027 Score=61.38 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
.+..++|.||+|+|||++|..+|..++..+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 3567899999999999999999999987654
No 270
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.48 E-value=0.0024 Score=56.79 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.++++.|+|++|||||||...|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456999999999999999999998764
No 271
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.47 E-value=0.0025 Score=56.52 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=24.8
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
......++|+|||||||||+...|+..+.
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34567999999999999999999987653
No 272
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.019 Score=57.20 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..+++.||+|+||||+|..+|+.++++
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35568999999999999999999999774
No 273
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.45 E-value=0.0021 Score=55.60 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=19.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
...+++++|.|++|+|||+|..++.+.+.
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45578999999999999999999887653
No 274
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.43 E-value=0.0097 Score=55.16 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=74.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccc--eeccccCCCcccCHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPH--HLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvph--hlid~~~~~~~~s~~~f~~~a 110 (327)
++|+|+|-+.||||+.|.+|.+.+..++- =|++. |. .+|--|+.| |..| .-....-+...
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~-K~~v~------ii-----~deslg~~~ns~y~~------s~~EK~lRg~L 63 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGT-KQSVR------II-----DDESLGIEKNSNYGD------SQAEKALRGKL 63 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcc-cceEE------Ee-----chhhcCCCCcccccc------cHHHHHHHHHH
Confidence 58999999999999999999988743211 00110 11 112223332 1111 11234445555
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchh-hhcccceEEEEEeCCHHHHHHHhhhhhhhh---hhccHHHHHHhh
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAE-FQLRYECFFLWVDVSLPVLHSFVSERVDRM---VELGLVEEVKQM 186 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~-~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~M---l~~Gl~~Ev~~l 186 (327)
...++.-++++.+.|+ + +..|++.....+.-+ ...+--.|+++..+|.+..++-=..|-+.= .+.++++.+..=
T Consensus 64 ~S~v~R~Lsk~~iVI~-D-slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~R 141 (281)
T KOG3062|consen 64 RSAVDRSLSKGDIVIV-D-SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQR 141 (281)
T ss_pred HHHHHhhcccCcEEEE-e-cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHH
Confidence 5566666677887444 4 357776443221000 012234678999999999888877775432 233444444433
Q ss_pred hc
Q 020362 187 FD 188 (327)
Q Consensus 187 ~~ 188 (327)
|+
T Consensus 142 yE 143 (281)
T KOG3062|consen 142 YE 143 (281)
T ss_pred hh
Confidence 43
No 275
>PHA02244 ATPase-like protein
Probab=96.42 E-value=0.0026 Score=62.89 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
...-|.|.||||||||+||..||..++.+++..+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3445788999999999999999999998877654
No 276
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.02 Score=59.07 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||.|+||||+|..||+.++++
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999764
No 277
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0027 Score=63.64 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=33.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV 68 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv 68 (327)
+..|+++||||||||-||..||+-++.+|.=+|--++
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtL 262 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTL 262 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccch
Confidence 4579999999999999999999999999988887653
No 278
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.41 E-value=0.0035 Score=62.65 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
..++-+++.||+|||||+|+..+|..++..++....
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 456789999999999999999999999888776543
No 279
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.40 E-value=0.0033 Score=63.60 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
..++-++|.||+|||||++|..+|..++..++..+
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 35667899999999999999999999988776644
No 280
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.39 E-value=0.0039 Score=52.45 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe-EEeC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE-IINS 63 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e-iIs~ 63 (327)
+...+|++.|+.|+||||+++.+++.+|.+ .|++
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~S 47 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTS 47 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCC
Confidence 456899999999999999999999999753 4443
No 281
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.39 E-value=0.0039 Score=57.74 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.+.+++|+||+||||||++..++..+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999999876
No 282
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.38 E-value=0.0024 Score=62.62 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
...+.|+|+|+|||||||+...|+..++
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 3567899999999999999999998775
No 283
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.37 E-value=0.0028 Score=58.40 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLA 53 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA 53 (327)
..+.-+++|+||+|||||||.+-|.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3567799999999999999998886
No 284
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.37 E-value=0.0034 Score=63.44 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~q 67 (327)
.+|.+|+++|++||||||++..||..+ ..-+|++|..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 457899999999999999999999766 24578888754
No 285
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.37 E-value=0.0036 Score=64.06 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
..++-+++.||+|||||+++..||...+..++..+.-
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~ 122 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGS 122 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHH
Confidence 3456799999999999999999999999988876643
No 286
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.067 Score=57.54 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||.|+||||+++.||+.++++
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 35678899999999999999999999864
No 287
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.018 Score=61.00 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||.|+||||+|+.+|+.++++
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 34568999999999999999999999875
No 288
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.33 E-value=0.0054 Score=54.17 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=62.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhh-hcCccceeccccCCCcccCHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEE-CHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E-~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
+.|+|+|+.=||||+.|..||...++.++ | |.|+++-..| +++|.||-- -.|..=.++..+...+.
T Consensus 1 ~~ilvtGgaRSGKS~~AE~la~~~~~~v~-------Y----vAT~~a~D~Em~~RI~~Hr~--rRp~~W~tvE~~~~l~~ 67 (175)
T COG2087 1 MMILVTGGARSGKSSFAEALAGESGGQVL-------Y----VATGRAFDDEMQERIAHHRA--RRPEHWRTVEAPLDLAT 67 (175)
T ss_pred CeEEEecCccCCchHHHHHHHHhhCCceE-------E----EEecCCCCHHHHHHHHHHHh--cCCCcceEEeccccHHH
Confidence 36899999999999999999999777663 3 6788877444 467888864 22322223334444433
Q ss_pred HHHHHHHhCCCCeEEEcCchHHHHHHHc
Q 020362 112 LAIESILSRDRLPIIAGGSSSYIKALVN 139 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~Y~~all~ 139 (327)
.+.... .++-+|++++-+.|+..++.
T Consensus 68 -~L~~~~-~~~~~VLvDcLt~wvtNll~ 93 (175)
T COG2087 68 -LLEALI-EPGDVVLVDCLTLWVTNLLF 93 (175)
T ss_pred -HHHhcc-cCCCEEEEEcHHHHHHHHHh
Confidence 333332 34468999999999887765
No 289
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0031 Score=66.54 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
.+.+++|++||+|+|||+|+..+|+.+|-+++.
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 356899999999999999999999999977764
No 290
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.32 E-value=0.0033 Score=52.55 Aligned_cols=23 Identities=43% Similarity=0.826 Sum_probs=20.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+++|+|++|+|||+++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 291
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.025 Score=61.64 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
+-+..++++||.|+||||+|+.||+.++++
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 345678999999999999999999999875
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.31 E-value=0.014 Score=56.99 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=33.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKG 71 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~g 71 (327)
..++.+|.|+|++|||||||...|+..+ ...+|+.|--..+.|
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~ 100 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTG 100 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccc
Confidence 3467799999999999999999887655 345888886554443
No 293
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.30 E-value=0.0038 Score=60.66 Aligned_cols=31 Identities=35% Similarity=0.391 Sum_probs=27.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
.+.|+|+|++|||||||+..|+..++..++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4589999999999999999999999887754
No 294
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.30 E-value=0.0025 Score=51.67 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.7
Q ss_pred EEEEcCCcccHHHHHHHHHHhCC
Q 020362 35 VFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~ 57 (327)
|.|.|++|+|||+++..|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998764
No 295
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.29 E-value=0.0053 Score=45.55 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.++.+|+|++|||||||-.++.--
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999998877544
No 296
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.0041 Score=64.19 Aligned_cols=38 Identities=29% Similarity=0.577 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-------CCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-------PAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-------~~eiIs~Ds~q 67 (327)
....+|+|+||||+||||++..||..+ ..-+|++|..+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 456899999999999999999998653 23477888643
No 297
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.28 E-value=0.0033 Score=61.94 Aligned_cols=27 Identities=37% Similarity=0.685 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+|+|+|||||||||+...|...+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998775
No 298
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.27 E-value=0.0034 Score=63.23 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=27.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC-------CCeEEeCCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF-------PAEIINSDKM 66 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~-------~~eiIs~Ds~ 66 (327)
..+++|+||||+||||++..||..+ ..-+|++|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 5699999999999999999987643 2347778864
No 299
>PF05729 NACHT: NACHT domain
Probab=96.26 E-value=0.0032 Score=53.09 Aligned_cols=24 Identities=38% Similarity=0.703 Sum_probs=21.8
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++++|.|++|+|||+++..++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 478999999999999999999876
No 300
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.25 E-value=0.0035 Score=58.01 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=23.5
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
+-..+...++|+||||||||||-.-|+-
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3345678999999999999999988874
No 301
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.072 Score=55.66 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
-+..++++||.|+|||++|..||+.++++
T Consensus 37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 45689999999999999999999998754
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=96.18 E-value=0.0048 Score=60.35 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++.+|+++|++|+||||++..||..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999888888654
No 303
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.18 E-value=0.0048 Score=57.66 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
....|+|+|+|||||||+...|...++-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 3789999999999999999999988743
No 304
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.18 E-value=0.0061 Score=58.57 Aligned_cols=26 Identities=38% Similarity=0.607 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+.|+|+|+|||||||++..|...+
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999875
No 305
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.17 E-value=0.031 Score=53.97 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
..+.-+|.|+|||||||||...++-..+|
T Consensus 122 ~~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 122 ESPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred hCCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 44567999999999999998777766554
No 306
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.17 E-value=0.013 Score=63.98 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+....++++||+|+|||+++..||.++
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 345688899999999999999999987
No 307
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.032 Score=59.14 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||.|+||||+|+.||+.++++
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35788999999999999999999999763
No 308
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.17 E-value=0.0049 Score=63.06 Aligned_cols=36 Identities=31% Similarity=0.525 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC----C---CeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF----P---AEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~----~---~eiIs~Ds 65 (327)
.++.+++++||||+||||++..||..+ | .-+|.+|.
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 346799999999999999999999654 2 23677776
No 309
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.16 E-value=0.0049 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..++|.||+|||||+||..+++..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
No 310
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.16 E-value=0.0039 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
|+|.|+|+.+||||||+..|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999997765
No 311
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.15 E-value=0.0055 Score=58.42 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
.+.++++.||+|+|||+++..+++.++..++
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 4568888999999999999999998876544
No 312
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.13 E-value=0.0033 Score=58.49 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=22.7
Q ss_pred EEcCCcccHHHHHHHHHHhCC-----CeEEeCCccc
Q 020362 37 VMGATGTGKSRLAIDLATRFP-----AEIINSDKMQ 67 (327)
Q Consensus 37 I~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~q 67 (327)
|+||.||||||++..+.+.+. .-+||.|--.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence 689999999999999998763 3588877543
No 313
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.0066 Score=61.08 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-------CCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-------PAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-------~~eiIs~Ds~q 67 (327)
....+|+++||||+||||+...||.++ ...+|.+|..+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 356799999999999999999998753 23456666544
No 314
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0042 Score=61.00 Aligned_cols=37 Identities=35% Similarity=0.477 Sum_probs=33.4
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
+...++-|.+.||+|+|||-+|.++|++-|+.+||.+
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 3457889999999999999999999999999999865
No 315
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.039 Score=58.24 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
-+..+++.||.|+||||+|..||+.++++
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35569999999999999999999999875
No 316
>PRK13768 GTPase; Provisional
Probab=96.09 E-value=0.0066 Score=56.81 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=27.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds 65 (327)
..+++|.|+.||||||++..++..+ ..-+|+.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4689999999999999998888665 234777775
No 317
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.095 Score=54.55 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.+..++++||.|+||||+|..+|+.+++
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999998865
No 318
>PRK05973 replicative DNA helicase; Provisional
Probab=96.07 E-value=0.0068 Score=56.53 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..+++|.|+||+|||+++..++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 55679999999999999999998764
No 319
>PRK06526 transposase; Provisional
Probab=96.05 E-value=0.0051 Score=57.81 Aligned_cols=29 Identities=41% Similarity=0.626 Sum_probs=24.0
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+...+..++|+||+|||||.||..|+...
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 33456789999999999999999998653
No 320
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.04 E-value=0.0073 Score=54.51 Aligned_cols=27 Identities=41% Similarity=0.614 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++..++.|.|++|||||+++..+|...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 321
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.04 E-value=0.006 Score=65.67 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=28.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
..+.++||||||||.+|..||+.++..++..|
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id 520 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEee
Confidence 36899999999999999999999988877665
No 322
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.03 E-value=0.015 Score=62.52 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC----------CCeEEeCCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF----------PAEIINSDK 65 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~----------~~eiIs~Ds 65 (327)
.+..++++||+|+|||+++..||+++ +..+++.|-
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 45678899999999999999999987 667777773
No 323
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.13 Score=53.84 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
-+..++++||.|+|||++|..||+.++++
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 35678999999999999999999998754
No 324
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.02 E-value=0.0075 Score=45.86 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=27.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF---PAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds~ 66 (327)
++++.|..|+|||+++..||..+ |..++-.|..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d~ 36 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDY 36 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECCE
Confidence 47899999999999999999876 6677777733
No 325
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.02 E-value=0.015 Score=63.25 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC----------CCeEEeCCccch
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF----------PAEIINSDKMQV 68 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~----------~~eiIs~Ds~qv 68 (327)
+.+..++++||+|+|||+++..||..+ +..+++.|.-.+
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l 246 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL 246 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH
Confidence 345677899999999999999999986 356777765443
No 326
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.01 E-value=0.047 Score=52.68 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..+++.||+|+|||++|..+|+.+..+
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35688999999999999999999998654
No 327
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.033 Score=57.67 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||+|+||||+|..+|+.++++
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999764
No 328
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.00 E-value=0.0064 Score=56.06 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
..+..++|.|++|+||||+|..|+. ..-+++.|.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 4467899999999999999999862 356888775
No 329
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.035 Score=58.17 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||+|+|||++|..||+.+++.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35678999999999999999999998753
No 330
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0076 Score=61.43 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
..++.+++.||+|||||.||.++|...+..+++.|.-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4566899999999999999999999999999998776
No 331
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.0072 Score=55.75 Aligned_cols=28 Identities=36% Similarity=0.393 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++.++.+++||+||||||+.+.|-+..
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 4567899999999999999999886543
No 332
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.99 E-value=0.0058 Score=59.69 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
....+|+|+|||||||||+...|...++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3457999999999999999999987653
No 333
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.99 E-value=0.0055 Score=59.65 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+.|+|+|+|||||||+...|....
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998865
No 334
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.98 E-value=0.0056 Score=59.77 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
..+.|+|+|+|||||||+...|....+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 4679999999999999999999988753
No 335
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.96 E-value=0.0068 Score=57.93 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+.++|.||+|||||++|..+++.+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999874
No 336
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.96 E-value=0.0061 Score=53.79 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=28.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCC-CeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFP-AEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~-~eiIs~Ds~ 66 (327)
+|+=+++-||||||+|+.|++-|| +..|..|.+
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 355678999999999999999999 888888853
No 337
>CHL00176 ftsH cell division protein; Validated
Probab=95.95 E-value=0.0075 Score=63.76 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.++-+++.||+|||||+||..+|...+.++++.+.-+
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~ 251 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSE 251 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHH
Confidence 4567999999999999999999999998888766443
No 338
>PRK04296 thymidine kinase; Provisional
Probab=95.94 E-value=0.006 Score=54.52 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+++++||+|+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 339
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.93 E-value=0.0061 Score=51.77 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=20.2
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
|.|.|++|+|||++++.||+.+++.+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 679999999999999999999998764
No 340
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=95.92 E-value=0.071 Score=56.67 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=29.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
..+++++|.+|+|||++|..|++.+++..+++|.+
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~ 249 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIF 249 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEE
Confidence 46899999999999999999999987665555543
No 341
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.91 E-value=0.0049 Score=51.12 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+|++|||||||...|+...
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEccCCCccccceeeecccc
Confidence 3456799999999999999999998765
No 342
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=95.91 E-value=0.051 Score=52.64 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKG 71 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~g 71 (327)
..+.+++.|+||+|||.|+..|+.. +..||...+..-|+|
T Consensus 126 ~~~~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hrG 165 (311)
T TIGR03167 126 PFPLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLANHRG 165 (311)
T ss_pred CCceeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHHhcC
Confidence 3345678999999999999999876 788999999999987
No 343
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.90 E-value=0.016 Score=54.16 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.9
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+.+.+-.++|+|++|||||+|...|...+.
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 345566899999999999999999987654
No 344
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.90 E-value=0.0054 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+|.|+|++|||||||+..|++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999875
No 345
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.0069 Score=56.67 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=23.9
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
-..+.-.++|+||||||||||-+-+|--
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456679999999999999999999854
No 346
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.86 E-value=0.006 Score=63.58 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=24.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+.++++++||+|+|||+|+..||+.+
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 4466799999999999999999999865
No 347
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.86 E-value=0.0076 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEcCCcccHHHHHHHHHHhC
Q 020362 35 VFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~ 56 (327)
|+|+|++|||||||...|+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 348
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.85 E-value=0.0087 Score=53.16 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=22.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....-++|.|++|+|||.||..++.+.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 3456789999999999999999998753
No 349
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.85 E-value=0.0061 Score=60.43 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...+|+|+|||||||||+...|...+
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998776
No 350
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.85 E-value=0.0079 Score=59.14 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
..+-|+|.||+|||||+||..+|+.+|
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 467899999999999999999999996
No 351
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.85 E-value=0.0066 Score=52.37 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~ 54 (327)
+-|.++|++|||||||+..|-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4688999999999999999854
No 352
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.056 Score=55.52 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=24.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
+..++++||.|+||||+|..+|+.++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcC
Confidence 558999999999999999999998865
No 353
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.82 E-value=0.0085 Score=64.29 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=27.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
.++++||||||||.||..||+.++..++..|
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d 516 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFD 516 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEe
Confidence 5899999999999999999999988776655
No 354
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=95.82 E-value=0.0074 Score=53.23 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=25.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.|.|+|+||-.||||+|+.+||..||+.
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCC
Confidence 4799999999999999999999999863
No 355
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.82 E-value=0.0092 Score=53.40 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++..++.|+||+|||||+++..++...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998653
No 356
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.82 E-value=0.0087 Score=64.17 Aligned_cols=36 Identities=33% Similarity=0.384 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
..++-|+|.||+|||||+|+..+|..++..++..+.
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEec
Confidence 345779999999999999999999999988776554
No 357
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.78 E-value=0.0072 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHh
Q 020362 34 VVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+++|.||+|||||+|+..++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 358
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.78 E-value=0.013 Score=52.82 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
..+++|+|+|++|||||||...+++.++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999988754
No 359
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.0076 Score=56.27 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.9
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
--.+.-.+.|+|++|||||||++.|+--
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3456779999999999999999999843
No 360
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.76 E-value=0.0089 Score=49.62 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...|+++|++|+|||||...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999754
No 361
>PRK09183 transposase/IS protein; Provisional
Probab=95.76 E-value=0.0087 Score=56.27 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
......++|+||+|||||+|+..|+..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345567889999999999999999754
No 362
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.01 Score=58.39 Aligned_cols=42 Identities=36% Similarity=0.430 Sum_probs=34.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe---CCccchhc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIIN---SDKMQVYK 70 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs---~Ds~qvy~ 70 (327)
...|+=|++.||+|||||-||.++|.+.++.+|. +.-+|.|=
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYi 226 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYI 226 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHh
Confidence 3467889999999999999999999999998765 44445553
No 363
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.73 E-value=0.0087 Score=58.12 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+.|+|+|+|||||||+...|+...
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999999763
No 364
>PRK13764 ATPase; Provisional
Probab=95.72 E-value=0.0077 Score=63.13 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.....|+|+|||||||||++..|+..++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4467899999999999999999998764
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.72 E-value=0.0092 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+.++++|+||+|||||...|....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4899999999999999999998654
No 366
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.71 E-value=0.009 Score=52.54 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.+++.|+|+.+||||||..+|..++.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHH
Confidence 58999999999999999999988874
No 367
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.70 E-value=0.0085 Score=57.64 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
....++|+|||||||||+...|...++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 467999999999999999999997764
No 368
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0091 Score=63.13 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
.+.++++++||+|+|||++|..+|+.+|-++.
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 45789999999999999999999999997665
No 369
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.70 E-value=0.0092 Score=55.60 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
....+|+|.|+.|+|||+||..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 46789999999999999999999977
No 370
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.69 E-value=0.011 Score=63.52 Aligned_cols=35 Identities=37% Similarity=0.429 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
.++-|++.||+|||||++|..+|..++..+++.+.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 45668999999999999999999999988887654
No 371
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.68 E-value=0.0089 Score=53.86 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-.+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4567899999999999999999998654
No 372
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.68 E-value=0.01 Score=64.09 Aligned_cols=32 Identities=22% Similarity=0.507 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
+.+.++++||+|||||++|..||+.++..++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 34689999999999999999999999766553
No 373
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.66 E-value=0.0091 Score=56.34 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=26.9
Q ss_pred ccccCCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 26 HFFRRKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 26 ~~~~~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+|-.++..+++|+||.|||||||.+.|+.-+.
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34456678999999999999999999998653
No 374
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.051 Score=57.38 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=25.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
...+++.||.|+|||++|+.+|+.++++
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4578999999999999999999999764
No 375
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.66 E-value=0.011 Score=57.23 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
...-+.+.||+|+|||+|+..+|+.++..++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 3456889999999999999999999987655
No 376
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.052 Score=55.96 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.+..++++||+|+||||+|..+|+.++.
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567899999999999999999999853
No 377
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.66 E-value=0.01 Score=55.98 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
....+|+|+|+|||||||+...+...++
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3456899999999999999999877653
No 378
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.65 E-value=0.0094 Score=53.42 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-..
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999998543
No 379
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.65 E-value=0.03 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
....++|.|+||+|||.|+..+|..+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 34789999999999999999999875
No 380
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.64 E-value=0.032 Score=60.98 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.+....++++||+|+|||+++..||+++.
T Consensus 205 r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 205 RRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred cCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 34456788999999999999999999873
No 381
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.63 E-value=0.0095 Score=53.45 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467799999999999999999998654
No 382
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=0.043 Score=48.48 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC--CCeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF--PAEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~--~~eiIs~Ds~q 67 (327)
++++.++.||.||||||+...+--.+ +..+||+|.+-
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA 39 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIA 39 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHh
Confidence 36788899999999999965543333 45789998753
No 383
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.62 E-value=0.01 Score=52.50 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-..
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999999998543
No 384
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.61 E-value=0.0098 Score=53.65 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=24.5
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-..+..+++|+||+|||||||..-|+-..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567899999999999999999998543
No 385
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=95.60 E-value=0.0081 Score=52.32 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeE
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEI 60 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ei 60 (327)
.+.+.+|+|++|+||||+...|.-.+++..
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~~~ 47 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGGQS 47 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHSS-
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 568999999999999999999987776644
No 386
>PLN03025 replication factor C subunit; Provisional
Probab=95.60 E-value=0.01 Score=57.13 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+.+++.||+|||||++|..+|+.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577899999999999999999874
No 387
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.009 Score=58.47 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
....-.++|+|||||||||+-+-+|-
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34567899999999999999999994
No 388
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.59 E-value=0.0099 Score=53.54 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566899999999999999999998653
No 389
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=95.59 E-value=0.012 Score=56.28 Aligned_cols=35 Identities=31% Similarity=0.747 Sum_probs=30.8
Q ss_pred EEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc
Q 020362 35 VFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK 70 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~ 70 (327)
|.|+||+|+|||.+|.+|-++ |...|.=|.+-+|+
T Consensus 148 VLItG~SG~GKSElALeLi~r-ghrLVaDD~V~i~~ 182 (308)
T COG1493 148 VLITGPSGAGKSELALELIKR-GHRLVADDAVEIFR 182 (308)
T ss_pred EEEECCCCCCHhHHHHHHHHh-ccceeccccEEEEe
Confidence 889999999999999999988 56777777777887
No 390
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.012 Score=63.26 Aligned_cols=37 Identities=30% Similarity=0.542 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC----CC---eEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF----PA---EIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~----~~---eiIs~Ds~q 67 (327)
.+.+|+++||||+||||+...||..+ |. -+|.+|..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 46799999999999999999999655 22 478888654
No 391
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.59 E-value=0.01 Score=54.40 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4566899999999999999999998543
No 392
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.58 E-value=0.011 Score=60.74 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=27.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
..++.|+||+||||||....|++.+|.+++.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 4699999999999999999999999987653
No 393
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=95.58 E-value=0.078 Score=46.55 Aligned_cols=30 Identities=33% Similarity=0.662 Sum_probs=26.3
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+...+..+|-|+|.+||||||||-+|.+.+
T Consensus 26 l~~qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 26 LLKQKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred HhcCCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 345677899999999999999999998876
No 394
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.01 Score=54.04 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=25.3
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+-..+..+++|+||+|||||||...|+..+
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567899999999999999999998654
No 395
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.56 E-value=0.011 Score=53.19 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-.+..+++|+||+|||||||...|+..+
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556799999999999999999998643
No 396
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.55 E-value=0.082 Score=55.55 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.+..+++.||.|+|||++|..+|+.+.+
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3567999999999999999999999864
No 397
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.01 Score=54.17 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999999998654
No 398
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.011 Score=53.04 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998543
No 399
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.011 Score=54.09 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3567799999999999999999998543
No 400
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.54 E-value=0.011 Score=52.99 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567799999999999999999998543
No 401
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.54 E-value=0.011 Score=51.73 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.7
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+++.|+|++|||||||+..|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998763
No 402
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.53 E-value=0.091 Score=55.29 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..++++||.|+||||+|..||+.++++
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 35679999999999999999999999764
No 403
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.51 E-value=0.013 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
|..|+|+||.|||||||...+...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998775
No 404
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.49 E-value=0.012 Score=52.79 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999999998543
No 405
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.068 Score=52.10 Aligned_cols=30 Identities=30% Similarity=0.425 Sum_probs=26.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.+.+..+++.||.|+||+++|..+|+.+..
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 445678999999999999999999999865
No 406
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.49 E-value=0.0098 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=18.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+.+|.||+|||||++...++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 79999999999999888887764
No 407
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.48 E-value=0.011 Score=53.17 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-.+..+++|+||+|||||||..-|+-.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4567899999999999999999998543
No 408
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.47 E-value=0.011 Score=60.91 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
+.++-++|.||+|||||+++..+|..++..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 346679999999999999999999998654
No 409
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=95.46 E-value=0.0093 Score=57.61 Aligned_cols=38 Identities=26% Similarity=0.512 Sum_probs=32.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK 70 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~ 70 (327)
..-|+|+|++|+|||++|.+|-++ |..+|.=|...+++
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r-Gh~LVaDD~v~i~~ 183 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR-GHRLVADDAVDIKR 183 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCceEecCeEEEEE
Confidence 456899999999999999999987 67788888877765
No 410
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.46 E-value=0.012 Score=53.39 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-.+..+++|+||+|||||||...|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3467899999999999999999998654
No 411
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.012 Score=52.77 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999999998643
No 412
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.44 E-value=0.012 Score=53.07 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567799999999999999999998654
No 413
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=95.44 E-value=0.0091 Score=57.53 Aligned_cols=39 Identities=28% Similarity=0.581 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK 70 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~ 70 (327)
...-|+|+|++|+|||++|.+|-++ |..+|+=|...+++
T Consensus 145 ~g~gvli~G~sg~GKS~lal~Li~r-g~~lvaDD~~~~~~ 183 (304)
T TIGR00679 145 YGVGVLITGKSGVGKSETALELINR-GHRLVADDAVEIYR 183 (304)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCceeecCeEEEEE
Confidence 3567999999999999999999887 77888888777665
No 414
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.44 E-value=0.012 Score=52.99 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999999998543
No 415
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.013 Score=51.24 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=25.1
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+...+..+++|+||+|||||||..-|+-..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567799999999999999999998654
No 416
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.012 Score=53.30 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556799999999999999999998653
No 417
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.42 E-value=0.09 Score=52.56 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.+..+++.||+|+|||++|..+|+.+.++
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46789999999999999999999987654
No 418
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.41 E-value=0.013 Score=57.71 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
..+-+|.|+|++|||||||+..|.+++.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999987764
No 419
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.41 E-value=0.053 Score=46.63 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=25.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF-----PAEIINSDK 65 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds 65 (327)
+|.++|+.||||||++..|+..+ ..-++.+|-
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 37889999999999999998875 234777774
No 420
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.41 E-value=0.011 Score=59.81 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
..+.|++.||+|||||++|..||..+.++
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~ 221 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGE 221 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 46788999999999999999999988653
No 421
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.013 Score=53.61 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566799999999999999999998543
No 422
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.39 E-value=0.16 Score=48.04 Aligned_cols=74 Identities=18% Similarity=0.086 Sum_probs=43.6
Q ss_pred cceEEEEEeCCHHHHHHHh-hhhhhhhh-hccHHHHHHhhhcCCCCCcchhhhhccHHHHHHHHHcCCCccHHHHHHHHH
Q 020362 149 YECFFLWVDVSLPVLHSFV-SERVDRMV-ELGLVEEVKQMFDPQADYSRGIRRAIGVPELDQYIRAGSLLDHKIRAKLLE 226 (327)
Q Consensus 149 ~~~~~i~L~~~~e~L~~RL-~~Rv~~Ml-~~Gl~~Ev~~l~~~~~~~~~g~~qaIGykE~~~yl~~~~~~d~~~~~~ll~ 226 (327)
+++.+++|+++.++|-+|- +.|-.+.+ ..|++.|-.+.- +|++.=|++. =+
T Consensus 82 ~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~E----------------RelL~pLk~~-----------A~ 134 (286)
T COG1660 82 IDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKE----------------RELLAPLREI-----------AD 134 (286)
T ss_pred CCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHH----------------HHHHHHHHHH-----------hh
Confidence 5688999999999999987 33444544 345432221111 1111111111 02
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 020362 227 AAINKIKENTCNLSCRQLQKIHR 249 (327)
Q Consensus 227 ~aie~ik~~Tr~yAkRQ~tW~r~ 249 (327)
-.|+..+.+++++.++=++||+.
T Consensus 135 ~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 135 LVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred hEeecccCCHHHHHHHHHHHHcc
Confidence 33455567899999999999984
No 423
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.39 E-value=0.039 Score=53.18 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=48.8
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
...+|.++.+.|+|||||+-++.-||+.+--.-..+|-+ ||++...+.-..-.+.+|+
T Consensus 106 ~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V----------------------~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 106 NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV----------------------HHFVATLHFPHASKIEDYK 163 (344)
T ss_pred CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH----------------------HHhhhhccCCChHHHHHHH
Confidence 356788999999999999999999999852222222322 3333333333344567788
Q ss_pred HHHHHHHHHHHhCCCCeEE
Q 020362 108 NHASLAIESILSRDRLPII 126 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIv 126 (327)
....+.|.+..+..+.+|.
T Consensus 164 ~eL~~~v~~~v~~C~rslF 182 (344)
T KOG2170|consen 164 EELKNRVRGTVQACQRSLF 182 (344)
T ss_pred HHHHHHHHHHHHhcCCceE
Confidence 7776666665554444443
No 424
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.39 E-value=0.013 Score=53.62 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4567899999999999999999998543
No 425
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.38 E-value=0.011 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.0
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.++|.||||||||.++..++..+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 578999999999999999987753
No 426
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.36 E-value=0.014 Score=50.92 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-....+++|+||+|||||||...|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4567799999999999999999999654
No 427
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.36 E-value=0.014 Score=55.31 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=34.0
Q ss_pred ccccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 26 HFFRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 26 ~~~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+|-.=.|+.|++.||||||||-+|.+||...+.+++..-+-+
T Consensus 145 ~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~ 186 (368)
T COG1223 145 RFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE 186 (368)
T ss_pred HhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHH
Confidence 333335889999999999999999999999988888755433
No 428
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.35 E-value=0.021 Score=50.69 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
-.+..+++|+||+|||||||...+.-
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 45678999999999999999998853
No 429
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.35 E-value=0.014 Score=52.40 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566799999999999999999999654
No 430
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.35 E-value=0.012 Score=55.86 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=22.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++|.|+|+.|||||||+..|+..+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999877
No 431
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.33 E-value=0.013 Score=53.41 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456799999999999999999998543
No 432
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.33 E-value=0.014 Score=52.07 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456799999999999999999998543
No 433
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.32 E-value=0.014 Score=53.01 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999999998653
No 434
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.014 Score=53.81 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4567899999999999999999998654
No 435
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.015 Score=52.64 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-....+++|+||+|||||||...|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456899999999999999999998543
No 436
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.31 E-value=0.015 Score=52.94 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=24.5
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-..+..+++|+||+|||||||..-|+-..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567799999999999999999998543
No 437
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.014 Score=53.47 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-.+..+++|+||+|||||||...|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998654
No 438
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.30 E-value=0.016 Score=52.70 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+...++.|+|++|||||+|+..++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999854
No 439
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.30 E-value=0.014 Score=53.31 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=24.2
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...+..+++|+||+|||||||...|+-.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456779999999999999999999865
No 440
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.30 E-value=0.015 Score=50.98 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=25.3
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+--.+..+++|+||+|||||||...|+-..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 334567899999999999999999998654
No 441
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.30 E-value=0.018 Score=50.53 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+...+++|.|++|+|||+++..++..+
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998764
No 442
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.30 E-value=0.047 Score=59.66 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+.+..++++||+|+|||+++..||+++
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 355678899999999999999999986
No 443
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.013 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+. +++|+||+|||||||...|+-.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 99999999999999999998543
No 444
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.015 Score=50.97 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=24.9
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+--.+..+++|+||+|||||||...|+..+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567899999999999999999998553
No 445
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.29 E-value=0.013 Score=60.11 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-++...++|+||||||||||+.-|+..+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3466789999999999999999998654
No 446
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.28 E-value=0.015 Score=47.03 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=18.9
Q ss_pred EEEEcCCcccHHHHHHHHHH
Q 020362 35 VFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~ 54 (327)
|+|+|+||+|||||-..|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 447
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.014 Score=53.90 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..+..+++|+||+|||||||...|+..
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 456779999999999999999999854
No 448
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.27 E-value=0.016 Score=51.52 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
....+++|+||+|||||||..-|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 556799999999999999999998654
No 449
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.27 E-value=0.015 Score=51.68 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+|++|||||||..-|+-..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567799999999999999999998654
No 450
>PRK10908 cell division protein FtsE; Provisional
Probab=95.27 E-value=0.015 Score=52.60 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999999998554
No 451
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.27 E-value=0.014 Score=55.07 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDL 52 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~L 52 (327)
-+...+++|+|++|||||||...+
T Consensus 18 ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 18 IPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred ccCCcEEEEECCCCCchHHHHHHH
Confidence 466789999999999999999866
No 452
>PRK12377 putative replication protein; Provisional
Probab=95.26 E-value=0.013 Score=55.00 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...++|.||+|||||.||..++..+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999876
No 453
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.26 E-value=0.16 Score=53.65 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=25.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
+..+++.||.|+|||++|..||+.++.+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 5689999999999999999999999753
No 454
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.26 E-value=0.015 Score=52.91 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.0
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
-..+..+++|+||+|||||||...|+-.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3456789999999999999999999854
No 455
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.26 E-value=0.015 Score=51.99 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-.+..+++|+||+|||||||..-|+-..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3567899999999999999999998543
No 456
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.25 E-value=0.019 Score=56.29 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...+..++|.||+|+|||+++..+++.+
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999999765
No 457
>PF12846 AAA_10: AAA-like domain
Probab=95.24 E-value=0.018 Score=53.30 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=27.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCccchh
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF---PAEIINSDKMQVY 69 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds~qvy 69 (327)
+-++|+|+||||||+++..+...+ |..++-.|.-.-|
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDY 41 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchH
Confidence 457899999999999999888643 5555555654433
No 458
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.015 Score=53.45 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999999998654
No 459
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.23 E-value=0.016 Score=53.44 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567799999999999999999998554
No 460
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.23 E-value=0.016 Score=52.48 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=24.6
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-..+..+++|+||+|||||||..-|+-.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567899999999999999999998543
No 461
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.23 E-value=0.018 Score=61.83 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=28.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
...++|.||+|||||++|..+++..+..++..+.
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 3467899999999999999999998876655543
No 462
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.23 E-value=0.02 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+...++.|.|++|||||+++..+|..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~ 46 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE 46 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55789999999999999999999864
No 463
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.22 E-value=0.016 Score=52.32 Aligned_cols=30 Identities=33% Similarity=0.432 Sum_probs=25.0
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+-..+..+++|+||+|||||||...|+-..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 334567899999999999999999998543
No 464
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.22 E-value=0.017 Score=54.26 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..++.|.|++|||||+++.+++..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998764
No 465
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.22 E-value=0.019 Score=52.45 Aligned_cols=27 Identities=15% Similarity=0.447 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++..+++|+|+||+|||+++..++...
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999887653
No 466
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.21 E-value=0.014 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=19.7
Q ss_pred EEEEcCCcccHHHHHHHHHHhC
Q 020362 35 VFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~ 56 (327)
|+|+|++|+|||||...+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998877
No 467
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.21 E-value=0.018 Score=53.33 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.+.+.+|+||+|||||+|...|+-.++.
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4779999999999999999999877653
No 468
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.21 E-value=0.017 Score=51.46 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=25.1
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+...+..+++|+||+|||||||...|+-.+
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567899999999999999999998654
No 469
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.20 E-value=0.016 Score=54.02 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999999999654
No 470
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.19 E-value=0.089 Score=50.73 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=59.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTAT 104 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~ 104 (327)
.++.+|.|+|++|+|||||--.|.++| -.-||..|-=-.|-|=.|.-+|....+...-|--++- +....=+.+
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiR--s~~srG~lG 126 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIR--SSPSRGTLG 126 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEe--ecCCCccch
Confidence 346799999999999999999998877 2458888887788887777777665543322211111 111111223
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEE
Q 020362 105 DFRNHASLAIESILSRDRLPIIA 127 (327)
Q Consensus 105 ~f~~~a~~~i~~i~~~gk~pIvv 127 (327)
.--+...+++.-+-+.|--.||+
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIV 149 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIV 149 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEE
Confidence 33333444555455567666665
No 471
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=95.19 E-value=0.022 Score=52.86 Aligned_cols=113 Identities=20% Similarity=0.269 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCccccc-CCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVT-NKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~T-akp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
.+-+|++-|.-||||+.+...|.+.++. ||+.+.+ .+|+.+|+.. | ++ .. |
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDP-----------R~~~v~~~~~pt~eE~~~-p--~l----------wR-f--- 81 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDP-----------RGFRVHAFGKPTDEELRR-P--FL----------WR-F--- 81 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-G-----------GGEEEEE-SS--HHHHTS----TT----------HH-H---
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCC-----------CeeEEEeCCCCChhHcCC-C--cH----------HH-H---
Confidence 3578999999999999999999988754 3333333 4677777642 1 11 11 1
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHH---cCC-c-hhh---------------hcccceEEEEEeCCHHHHHHHhhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALV---NGD-A-AEF---------------QLRYECFFLWVDVSLPVLHSFVSE 169 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all---~~~-~-~~~---------------~~~~~~~~i~L~~~~e~L~~RL~~ 169 (327)
-..+-++|.+.|.-++ -|-+.+. .|. + .++ ...+..+.|||+.+.++-.+|+.+
T Consensus 82 ----w~~lP~~G~I~if~rS--WY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~ 155 (228)
T PF03976_consen 82 ----WRALPARGQIGIFDRS--WYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKE 155 (228)
T ss_dssp ----HTTS--TT-EEEEES---GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHH
T ss_pred ----HHhCCCCCEEEEEecc--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHH
Confidence 2334567887666553 3332222 221 1 011 123457889999999999999999
Q ss_pred hhhhhhhc
Q 020362 170 RVDRMVEL 177 (327)
Q Consensus 170 Rv~~Ml~~ 177 (327)
|.+.+...
T Consensus 156 ~~~~p~~~ 163 (228)
T PF03976_consen 156 REEDPLKR 163 (228)
T ss_dssp HHHSCCCG
T ss_pred HhcCcccc
Confidence 98776544
No 472
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.18 E-value=0.045 Score=53.30 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF---PAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds 65 (327)
++..++.|.||+|||||+||..++... |+.++=.|.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 456799999999999999999876543 444444443
No 473
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.18 E-value=0.017 Score=66.82 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=33.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
...++=|.++||+|||||-||.+||...+.++|+.+.-.
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~ 1665 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1665 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHH
Confidence 345778999999999999999999999999888765444
No 474
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.18 E-value=0.017 Score=52.40 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
++..+++|.|++|||||+|+.+++.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLY 41 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH
Confidence 5678999999999999999998764
No 475
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.17 E-value=0.016 Score=56.96 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=22.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..+.-.+++.||+||||||+-+-||-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34557899999999999999999983
No 476
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.16 E-value=0.017 Score=52.58 Aligned_cols=30 Identities=30% Similarity=0.394 Sum_probs=25.2
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+-..+..+++|+|++|||||||...|+-.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567899999999999999999998654
No 477
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.16 E-value=0.054 Score=52.82 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHH---hCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLAT---RFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~---~~~~eiIs~Ds 65 (327)
++..++.|.||+|||||+||..++. ..|+.++-.|.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 4567999999999999999999874 34555555554
No 478
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.16 E-value=0.018 Score=50.12 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567799999999999999999998664
No 479
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.16 E-value=0.017 Score=52.98 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999999998543
No 480
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.017 Score=52.06 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+ .+++|+||+|||||||...|+-.+
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 456 899999999999999999998543
No 481
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.15 E-value=0.022 Score=53.33 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+|++|||||||..-|+-.+
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3466799999999999999999998654
No 482
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=95.14 E-value=0.12 Score=48.11 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=72.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccc-cCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIV-TNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~-Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
..+-+|++-|.-||||..+...|.+.++..- +.+. ..+|+.+|+. |+++ -
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg-----------~~v~~~~~pt~eE~~---~p~l---------------w 79 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRG-----------ARVVALPKPSDRERT---QWYF---------------Q 79 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCe-----------eEEEeCCCCCHHHHc---ChHH---------------H
Confidence 3578999999999999999999999987533 3222 3467887764 2211 1
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchHHHHHHHcC---Cc--hhh---------------hcccceEEEEEeCCHHHHHHHhh
Q 020362 109 HASLAIESILSRDRLPIIAGGSSSYIKALVNG---DA--AEF---------------QLRYECFFLWVDVSLPVLHSFVS 168 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~---~~--~~~---------------~~~~~~~~i~L~~~~e~L~~RL~ 168 (327)
+--..+-.+|++.|.-++ -|-+.+... .. .++ ...+-.+.|||+.+.++-.+|+.
T Consensus 80 ---Rfw~~lP~~G~i~IF~rS--wY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~ 154 (230)
T TIGR03707 80 ---RYVQHLPAAGEIVLFDRS--WYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFK 154 (230)
T ss_pred ---HHHHhCCCCCeEEEEeCc--hhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHH
Confidence 112334567777666553 444444321 10 011 12345788999999999999999
Q ss_pred hhhhhhh
Q 020362 169 ERVDRMV 175 (327)
Q Consensus 169 ~Rv~~Ml 175 (327)
+|.+...
T Consensus 155 ~r~~~p~ 161 (230)
T TIGR03707 155 ARIDDPL 161 (230)
T ss_pred HHhcCCc
Confidence 9976553
No 483
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.017 Score=53.78 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3466799999999999999999998653
No 484
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.13 E-value=0.017 Score=52.79 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-..
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999999998654
No 485
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.13 E-value=0.022 Score=53.99 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=28.7
Q ss_pred ccccCCCeEEEEEcCCcccHHHHHHHHHHhC---CCeEE
Q 020362 26 HFFRRKDKVVFVMGATGTGKSRLAIDLATRF---PAEII 61 (327)
Q Consensus 26 ~~~~~~~~lIvI~GpTGSGKStLA~~LA~~~---~~eiI 61 (327)
.|-..+...+.|+|.+||||||+++.|..-. .|+|+
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~ 71 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL 71 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE
Confidence 3445677899999999999999999998765 35553
No 486
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.11 E-value=0.018 Score=52.24 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||..-|+...
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3556899999999999999999998543
No 487
>PRK10646 ADP-binding protein; Provisional
Probab=95.11 E-value=0.025 Score=49.34 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
+...+|++.|.-|+||||+++.|++.+|.
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34569999999999999999999999985
No 488
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.017 Score=51.36 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..+..+++|+||+|||||||..-|+-
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35668999999999999999999984
No 489
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.11 E-value=0.018 Score=52.68 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4567899999999999999999998554
No 490
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.11 E-value=0.017 Score=53.84 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=23.4
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
-..+...++|+|++|||||||...|+--
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCc
Confidence 3456779999999999999999988643
No 491
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.11 E-value=0.018 Score=53.12 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=24.3
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+-..+..+++|+|++|||||||...|+-.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33456779999999999999999999953
No 492
>PRK10536 hypothetical protein; Provisional
Probab=95.10 E-value=0.02 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=22.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..+++++||+|||||.||..++..
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999874
No 493
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.09 E-value=0.018 Score=52.68 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=25.1
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+--.+..+++|+|++|||||||...|+-.+
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 334567899999999999999999998653
No 494
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.09 E-value=0.018 Score=52.73 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+|++|||||||...|+-.+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999999998653
No 495
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.08 E-value=0.14 Score=48.09 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF---PAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds~q 67 (327)
.+...+.+.|+.|||||++...|..++ |..+|..+.-+
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 345678899999999999999999877 45666655544
No 496
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.07 E-value=0.019 Score=51.64 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=25.2
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+-..+..+++|+|++|||||||..-|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567899999999999999999998653
No 497
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.07 E-value=0.3 Score=49.07 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVY 69 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy 69 (327)
....++|.|++|+|||-|..+++... ++.++...+-+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT 155 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH
Confidence 45689999999999999999987654 3457766665543
No 498
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.07 E-value=0.017 Score=59.05 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=25.8
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
...+.-+|+++|||||||||.--.+.+.++.
T Consensus 254 ~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 254 LNRPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred HhCCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 3455679999999999999999888877754
No 499
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.02 Score=49.93 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=25.3
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+--.+..+++|+||+|||||||..-|+-.+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 334567899999999999999999998764
No 500
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.06 E-value=0.019 Score=48.96 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=24.7
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-.....+++|.|++|+|||||...|+..+
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34566899999999999999999998654
Done!