Query 020362
Match_columns 327
No_of_seqs 299 out of 2131
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:44:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a8t_A Adenylate isopentenyltr 100.0 3.2E-71 1.1E-75 533.4 31.4 288 3-296 16-339 (339)
2 3eph_A TRNA isopentenyltransfe 100.0 6.2E-67 2.1E-71 513.6 19.2 255 32-299 2-332 (409)
3 3exa_A TRNA delta(2)-isopenten 100.0 2.4E-63 8.1E-68 474.2 26.7 220 31-265 2-291 (322)
4 3foz_A TRNA delta(2)-isopenten 100.0 4E-63 1.4E-67 471.9 25.8 223 30-266 8-300 (316)
5 3crm_A TRNA delta(2)-isopenten 100.0 3.9E-57 1.3E-61 433.6 26.0 222 30-265 3-305 (323)
6 3d3q_A TRNA delta(2)-isopenten 100.0 7.2E-54 2.5E-58 413.4 25.5 218 32-264 7-296 (340)
7 2ze6_A Isopentenyl transferase 100.0 1.1E-36 3.9E-41 281.3 18.8 215 33-251 2-226 (253)
8 2qmh_A HPR kinase/phosphorylas 99.5 9E-15 3.1E-19 131.1 1.1 73 29-108 31-110 (205)
9 3trf_A Shikimate kinase, SK; a 99.3 1.1E-12 3.8E-17 113.1 7.3 133 31-188 4-140 (185)
10 3tau_A Guanylate kinase, GMP k 99.2 2.6E-13 8.8E-18 120.7 -2.8 125 28-171 4-142 (208)
11 3vaa_A Shikimate kinase, SK; s 99.2 1.1E-11 3.6E-16 109.1 6.0 120 29-175 22-144 (199)
12 3t61_A Gluconokinase; PSI-biol 99.1 2.4E-10 8.3E-15 100.1 11.8 129 28-183 14-144 (202)
13 1ex7_A Guanylate kinase; subst 99.1 4.1E-10 1.4E-14 99.5 12.8 115 33-171 2-136 (186)
14 1ly1_A Polynucleotide kinase; 99.1 3.2E-10 1.1E-14 96.4 11.2 120 32-173 2-129 (181)
15 2qor_A Guanylate kinase; phosp 99.1 8.3E-10 2.8E-14 97.2 13.1 126 28-171 8-148 (204)
16 1qhx_A CPT, protein (chloramph 99.1 1.1E-09 3.9E-14 93.4 11.5 125 32-173 3-136 (178)
17 2c95_A Adenylate kinase 1; tra 99.0 5.2E-10 1.8E-14 96.6 8.9 126 29-171 6-134 (196)
18 3a4m_A L-seryl-tRNA(SEC) kinas 99.0 2.3E-09 7.8E-14 98.4 11.8 127 31-188 3-137 (260)
19 1ukz_A Uridylate kinase; trans 99.0 2.1E-09 7.1E-14 93.9 10.9 126 29-171 12-142 (203)
20 1knq_A Gluconate kinase; ALFA/ 99.0 5.9E-09 2E-13 88.9 13.4 118 31-172 7-126 (175)
21 2rhm_A Putative kinase; P-loop 99.0 1E-09 3.5E-14 94.5 8.6 120 30-172 3-127 (193)
22 2vli_A Antibiotic resistance p 99.0 3.3E-09 1.1E-13 90.7 11.0 118 31-173 4-128 (183)
23 2iyv_A Shikimate kinase, SK; t 99.0 6.4E-10 2.2E-14 95.7 6.3 112 32-171 2-115 (184)
24 3zvl_A Bifunctional polynucleo 99.0 2.2E-09 7.4E-14 105.5 10.6 103 28-172 254-359 (416)
25 1via_A Shikimate kinase; struc 98.9 4E-10 1.4E-14 96.6 4.4 107 33-170 5-113 (175)
26 3ney_A 55 kDa erythrocyte memb 98.9 3.1E-10 1.1E-14 101.3 3.7 91 30-128 17-117 (197)
27 4eun_A Thermoresistant glucoki 98.9 1.1E-08 3.8E-13 89.7 13.1 119 31-173 28-148 (200)
28 3nwj_A ATSK2; P loop, shikimat 98.9 1.3E-09 4.4E-14 100.5 7.1 112 32-170 48-162 (250)
29 1tev_A UMP-CMP kinase; ploop, 98.9 4.7E-09 1.6E-13 90.1 9.8 37 31-67 2-38 (196)
30 3tr0_A Guanylate kinase, GMP k 98.9 1.2E-08 4.1E-13 88.8 12.4 116 30-171 5-140 (205)
31 2bwj_A Adenylate kinase 5; pho 98.9 2.3E-09 7.8E-14 92.8 7.6 124 31-171 11-137 (199)
32 3hdt_A Putative kinase; struct 98.9 7.9E-09 2.7E-13 93.6 11.3 151 26-188 8-174 (223)
33 1zuh_A Shikimate kinase; alpha 98.9 2.9E-09 1E-13 90.3 7.9 110 32-170 7-117 (168)
34 3kb2_A SPBC2 prophage-derived 98.9 1.4E-08 4.8E-13 85.5 12.0 35 33-67 2-36 (173)
35 3iij_A Coilin-interacting nucl 98.9 6.2E-09 2.1E-13 89.3 9.6 110 30-171 9-118 (180)
36 1ltq_A Polynucleotide kinase; 98.9 1.2E-08 4E-13 94.6 12.1 121 32-173 2-129 (301)
37 1kgd_A CASK, peripheral plasma 98.9 8.9E-09 3.1E-13 89.0 9.8 111 31-166 4-134 (180)
38 1e6c_A Shikimate kinase; phosp 98.9 2.1E-09 7.1E-14 91.1 5.6 111 33-170 3-116 (173)
39 2p5t_B PEZT; postsegregational 98.8 2.8E-08 9.7E-13 90.6 13.3 125 30-174 30-161 (253)
40 1gvn_B Zeta; postsegregational 98.8 7.9E-09 2.7E-13 96.6 9.3 123 30-171 31-163 (287)
41 3fdi_A Uncharacterized protein 98.8 1.7E-08 5.9E-13 89.5 10.4 124 31-170 5-137 (201)
42 1qf9_A UMP/CMP kinase, protein 98.8 1.1E-08 3.6E-13 87.7 8.6 36 31-66 5-40 (194)
43 2f6r_A COA synthase, bifunctio 98.8 1.2E-08 4E-13 95.0 9.3 36 30-66 73-108 (281)
44 3lw7_A Adenylate kinase relate 98.8 7.7E-09 2.6E-13 86.6 6.6 33 33-66 2-34 (179)
45 2pt5_A Shikimate kinase, SK; a 98.8 4.6E-09 1.6E-13 88.7 5.2 112 34-171 2-114 (168)
46 1kag_A SKI, shikimate kinase I 98.8 3.2E-09 1.1E-13 90.1 4.1 115 31-171 3-118 (173)
47 1uf9_A TT1252 protein; P-loop, 98.8 7.1E-09 2.4E-13 89.9 6.1 37 29-66 5-41 (203)
48 1uj2_A Uridine-cytidine kinase 98.8 2.4E-08 8.1E-13 90.9 9.4 119 30-170 20-171 (252)
49 3a00_A Guanylate kinase, GMP k 98.7 7E-08 2.4E-12 83.7 11.1 116 32-171 1-136 (186)
50 3uie_A Adenylyl-sulfate kinase 98.7 8.3E-08 2.8E-12 84.0 11.3 109 28-167 21-140 (200)
51 2pez_A Bifunctional 3'-phospho 98.7 7.8E-08 2.7E-12 82.4 10.6 115 31-170 4-125 (179)
52 2cdn_A Adenylate kinase; phosp 98.7 1.8E-08 6.1E-13 88.1 6.4 37 30-66 18-54 (201)
53 1kht_A Adenylate kinase; phosp 98.7 1.1E-07 3.9E-12 81.2 11.3 35 32-66 3-42 (192)
54 1y63_A LMAJ004144AAA protein; 98.7 3E-08 1E-12 85.9 7.7 38 30-67 8-46 (184)
55 1zd8_A GTP:AMP phosphotransfer 98.7 4E-08 1.4E-12 87.6 8.7 38 30-67 5-42 (227)
56 2yvu_A Probable adenylyl-sulfa 98.7 9.3E-08 3.2E-12 82.4 10.6 112 29-169 10-132 (186)
57 3cm0_A Adenylate kinase; ATP-b 98.7 1.5E-08 5.2E-13 86.9 5.4 36 31-66 3-38 (186)
58 1zak_A Adenylate kinase; ATP:A 98.7 3.3E-08 1.1E-12 87.8 7.3 37 31-67 4-40 (222)
59 1nks_A Adenylate kinase; therm 98.6 1.1E-08 3.9E-13 87.5 3.5 33 33-65 2-39 (194)
60 3lnc_A Guanylate kinase, GMP k 98.6 4.3E-08 1.5E-12 87.7 7.0 57 27-92 22-79 (231)
61 4e22_A Cytidylate kinase; P-lo 98.6 1E-07 3.5E-12 87.0 9.5 40 28-67 23-62 (252)
62 1cke_A CK, MSSA, protein (cyti 98.6 1.8E-08 6.1E-13 89.2 3.8 39 30-68 3-41 (227)
63 3be4_A Adenylate kinase; malar 98.6 1.4E-07 4.8E-12 83.7 9.3 35 33-67 6-40 (217)
64 1aky_A Adenylate kinase; ATP:A 98.6 1.4E-07 4.7E-12 83.6 9.0 37 31-67 3-39 (220)
65 1vht_A Dephospho-COA kinase; s 98.6 1.7E-07 5.9E-12 82.7 9.5 35 31-66 3-37 (218)
66 3umf_A Adenylate kinase; rossm 98.6 1.4E-07 4.8E-12 85.1 8.9 126 28-171 25-154 (217)
67 2wwf_A Thymidilate kinase, put 98.6 2.7E-08 9.4E-13 86.9 4.0 36 30-65 8-43 (212)
68 1nn5_A Similar to deoxythymidy 98.6 7.6E-08 2.6E-12 84.1 6.6 30 30-59 7-36 (215)
69 2qt1_A Nicotinamide riboside k 98.6 3.9E-07 1.3E-11 79.8 11.0 38 30-67 19-57 (207)
70 3dl0_A Adenylate kinase; phosp 98.5 8.8E-08 3E-12 84.4 6.6 33 34-66 2-34 (216)
71 2pbr_A DTMP kinase, thymidylat 98.5 5.9E-08 2E-12 83.2 5.3 32 34-65 2-36 (195)
72 3fb4_A Adenylate kinase; psych 98.5 6.6E-08 2.3E-12 85.1 5.6 33 34-66 2-34 (216)
73 3tlx_A Adenylate kinase 2; str 98.5 9.7E-08 3.3E-12 86.7 6.6 37 30-66 27-63 (243)
74 1x6v_B Bifunctional 3'-phospho 98.5 3.7E-07 1.3E-11 94.3 10.9 116 31-170 51-172 (630)
75 2z0h_A DTMP kinase, thymidylat 98.5 1.1E-07 3.8E-12 81.9 5.7 31 34-64 2-35 (197)
76 2axn_A 6-phosphofructo-2-kinas 98.5 6.1E-07 2.1E-11 90.7 11.5 123 28-171 31-169 (520)
77 1s96_A Guanylate kinase, GMP k 98.5 2.5E-06 8.4E-11 76.7 14.0 129 28-171 12-151 (219)
78 2xb4_A Adenylate kinase; ATP-b 98.4 4.7E-07 1.6E-11 80.9 8.5 34 34-67 2-35 (223)
79 1ak2_A Adenylate kinase isoenz 98.4 3.3E-07 1.1E-11 82.2 7.5 37 30-66 14-50 (233)
80 1m7g_A Adenylylsulfate kinase; 98.4 5.9E-07 2E-11 79.2 9.0 114 30-167 23-149 (211)
81 3r20_A Cytidylate kinase; stru 98.4 4.1E-07 1.4E-11 83.0 8.1 39 28-66 5-43 (233)
82 2if2_A Dephospho-COA kinase; a 98.4 3E-07 1E-11 80.1 6.3 34 33-67 2-35 (204)
83 2grj_A Dephospho-COA kinase; T 98.4 6.3E-07 2.2E-11 79.1 8.2 37 30-66 10-46 (192)
84 1e4v_A Adenylate kinase; trans 98.4 4.8E-07 1.6E-11 79.8 7.4 33 34-66 2-34 (214)
85 2plr_A DTMP kinase, probable t 98.4 1.4E-06 4.9E-11 75.5 10.3 28 31-58 3-30 (213)
86 2j41_A Guanylate kinase; GMP, 98.4 1.7E-06 5.8E-11 74.9 10.6 26 31-56 5-30 (207)
87 1jjv_A Dephospho-COA kinase; P 98.4 8.2E-07 2.8E-11 77.6 8.0 34 33-67 3-36 (206)
88 2bdt_A BH3686; alpha-beta prot 98.4 4.3E-06 1.5E-10 71.9 12.2 35 32-66 2-37 (189)
89 2jaq_A Deoxyguanosine kinase; 98.3 1.7E-06 5.9E-11 74.5 9.0 29 34-62 2-30 (205)
90 4i1u_A Dephospho-COA kinase; s 98.3 4.8E-06 1.7E-10 74.8 11.0 125 31-171 8-153 (210)
91 1lvg_A Guanylate kinase, GMP k 98.3 9.3E-06 3.2E-10 71.2 12.2 54 31-92 3-56 (198)
92 4eaq_A DTMP kinase, thymidylat 98.2 1.1E-05 3.8E-10 72.6 11.2 28 30-57 24-51 (229)
93 3gmt_A Adenylate kinase; ssgci 98.1 4.3E-06 1.5E-10 76.1 7.4 122 33-171 9-132 (230)
94 1kjw_A Postsynaptic density pr 98.1 1.5E-05 5E-10 75.0 11.1 114 30-171 103-236 (295)
95 3sr0_A Adenylate kinase; phosp 98.1 3.3E-06 1.1E-10 75.3 6.1 33 34-66 2-34 (206)
96 4edh_A DTMP kinase, thymidylat 98.1 3.3E-06 1.1E-10 75.6 5.7 27 31-57 5-31 (213)
97 1zp6_A Hypothetical protein AT 98.1 3.9E-05 1.3E-09 65.6 12.0 37 30-66 7-45 (191)
98 2gks_A Bifunctional SAT/APS ki 98.0 7.3E-06 2.5E-10 83.3 7.8 108 31-169 371-489 (546)
99 1z6g_A Guanylate kinase; struc 98.0 4.5E-05 1.5E-09 67.8 12.1 55 29-91 20-74 (218)
100 1rz3_A Hypothetical protein rb 98.0 1.8E-06 6.3E-11 75.6 2.7 37 30-66 20-61 (201)
101 3tqc_A Pantothenate kinase; bi 98.0 1.6E-05 5.5E-10 75.7 9.3 38 30-67 90-134 (321)
102 1m8p_A Sulfate adenylyltransfe 98.0 2.4E-05 8.1E-10 80.0 10.6 109 30-168 394-514 (573)
103 3ake_A Cytidylate kinase; CMP 98.0 2.9E-06 1E-10 73.5 3.1 35 33-67 3-37 (208)
104 1a7j_A Phosphoribulokinase; tr 98.0 2.1E-06 7.1E-11 80.3 1.9 39 30-68 3-46 (290)
105 3lv8_A DTMP kinase, thymidylat 97.9 9.9E-06 3.4E-10 73.8 5.9 27 31-57 26-52 (236)
106 3c8u_A Fructokinase; YP_612366 97.9 3.2E-05 1.1E-09 67.9 8.6 38 30-67 20-62 (208)
107 1sq5_A Pantothenate kinase; P- 97.9 1.5E-05 5.2E-10 74.8 6.9 38 30-67 78-122 (308)
108 1bif_A 6-phosphofructo-2-kinas 97.9 2.3E-05 7.7E-10 77.8 8.2 35 28-62 35-69 (469)
109 4tmk_A Protein (thymidylate ki 97.9 4.5E-05 1.5E-09 68.3 9.0 27 31-57 2-28 (213)
110 3tvt_A Disks large 1 tumor sup 97.9 0.0001 3.5E-09 69.2 11.7 116 30-172 98-233 (292)
111 3cr8_A Sulfate adenylyltranfer 97.8 4.2E-05 1.4E-09 77.9 9.5 28 30-57 367-394 (552)
112 3v9p_A DTMP kinase, thymidylat 97.8 4.8E-06 1.6E-10 75.5 2.2 134 30-171 23-173 (227)
113 2v54_A DTMP kinase, thymidylat 97.8 9.6E-06 3.3E-10 70.1 3.7 34 31-64 3-37 (204)
114 2h92_A Cytidylate kinase; ross 97.7 1.3E-05 4.5E-10 70.3 3.4 35 32-66 3-37 (219)
115 2bbw_A Adenylate kinase 4, AK4 97.7 1E-05 3.5E-10 72.9 2.6 40 28-67 23-62 (246)
116 3asz_A Uridine kinase; cytidin 97.7 2.2E-05 7.4E-10 68.5 3.6 37 30-66 4-42 (211)
117 1q3t_A Cytidylate kinase; nucl 97.7 2.1E-05 7.2E-10 70.4 3.5 38 30-67 14-51 (236)
118 2xkx_A Disks large homolog 4; 97.6 4.5E-05 1.5E-09 79.8 6.1 121 31-171 530-662 (721)
119 4gp7_A Metallophosphoesterase; 97.6 0.00014 4.6E-09 62.1 7.6 115 30-173 7-124 (171)
120 3eie_A Vacuolar protein sortin 97.6 8.4E-05 2.9E-09 69.7 6.6 36 31-66 50-85 (322)
121 4hlc_A DTMP kinase, thymidylat 97.6 0.00026 8.8E-09 62.8 8.9 25 32-56 2-26 (205)
122 1d2n_A N-ethylmaleimide-sensit 97.5 0.00045 1.5E-08 62.7 10.5 35 30-64 62-96 (272)
123 3ld9_A DTMP kinase, thymidylat 97.5 0.00014 4.7E-09 65.7 6.4 28 30-57 19-46 (223)
124 1znw_A Guanylate kinase, GMP k 97.5 0.00012 4.2E-09 64.1 5.6 28 30-57 18-45 (207)
125 2jeo_A Uridine-cytidine kinase 97.5 8.2E-05 2.8E-09 67.0 4.5 43 28-72 21-73 (245)
126 3bos_A Putative DNA replicatio 97.4 0.00081 2.8E-08 58.6 10.6 27 31-57 51-77 (242)
127 3syl_A Protein CBBX; photosynt 97.4 0.00052 1.8E-08 63.0 9.2 39 30-68 65-110 (309)
128 3t15_A Ribulose bisphosphate c 97.4 7.3E-05 2.5E-09 69.5 3.2 37 30-66 34-70 (293)
129 1jbk_A CLPB protein; beta barr 97.3 0.0008 2.7E-08 56.0 8.9 27 30-56 41-67 (195)
130 2qp9_X Vacuolar protein sortin 97.3 0.00019 6.5E-09 68.5 5.3 38 31-68 83-120 (355)
131 2p65_A Hypothetical protein PF 97.2 0.00021 7.3E-09 59.6 4.2 27 30-56 41-67 (187)
132 1odf_A YGR205W, hypothetical 3 97.2 0.00019 6.5E-09 67.1 4.2 38 30-67 29-74 (290)
133 3h4m_A Proteasome-activating n 97.2 0.00033 1.1E-08 63.7 5.4 38 30-67 49-86 (285)
134 2kjq_A DNAA-related protein; s 97.2 0.00066 2.2E-08 56.9 6.8 26 31-56 35-60 (149)
135 3cf0_A Transitional endoplasmi 97.2 0.0003 1E-08 65.4 5.1 38 30-67 47-84 (301)
136 1lv7_A FTSH; alpha/beta domain 97.2 0.00024 8.3E-09 63.9 4.3 34 32-65 45-78 (257)
137 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00022 7.4E-09 63.8 3.9 35 30-64 37-71 (262)
138 3tsz_A Tight junction protein 97.2 0.0018 6.3E-08 63.0 10.7 101 30-170 230-330 (391)
139 3b9p_A CG5977-PA, isoform A; A 97.1 0.00034 1.2E-08 64.0 4.8 34 31-64 53-86 (297)
140 1tue_A Replication protein E1; 97.1 0.0003 1E-08 63.2 4.0 35 30-64 56-90 (212)
141 3hws_A ATP-dependent CLP prote 97.1 0.00029 9.9E-09 67.0 4.2 37 31-67 50-86 (363)
142 1p5z_B DCK, deoxycytidine kina 97.1 0.00018 6.3E-09 65.3 2.6 36 28-63 20-56 (263)
143 4b4t_K 26S protease regulatory 97.0 0.00039 1.3E-08 68.6 4.2 38 30-67 204-241 (428)
144 1um8_A ATP-dependent CLP prote 97.0 0.0004 1.4E-08 66.2 4.1 36 31-66 71-106 (376)
145 4b4t_M 26S protease regulatory 97.0 0.00041 1.4E-08 68.6 4.2 39 29-67 212-250 (434)
146 3tqf_A HPR(Ser) kinase; transf 97.0 0.00037 1.3E-08 61.0 3.4 41 30-71 14-54 (181)
147 1ofh_A ATP-dependent HSL prote 97.0 0.00036 1.2E-08 63.7 3.5 36 31-66 49-84 (310)
148 1gtv_A TMK, thymidylate kinase 97.0 0.00021 7.3E-09 62.0 1.8 25 33-57 1-25 (214)
149 4b4t_L 26S protease subunit RP 97.0 0.00045 1.6E-08 68.3 4.2 37 29-65 212-248 (437)
150 1g8f_A Sulfate adenylyltransfe 96.9 0.0004 1.4E-08 70.0 3.6 28 31-58 394-421 (511)
151 4b4t_J 26S protease regulatory 96.9 0.00047 1.6E-08 67.6 3.8 39 29-67 179-217 (405)
152 3ec2_A DNA replication protein 96.9 0.00039 1.3E-08 59.1 2.8 27 30-56 36-62 (180)
153 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.00074 2.5E-08 63.5 4.8 35 30-64 43-78 (322)
154 2ocp_A DGK, deoxyguanosine kin 96.9 0.00078 2.7E-08 60.2 4.8 28 31-58 1-28 (241)
155 1c9k_A COBU, adenosylcobinamid 96.9 0.00025 8.5E-09 62.1 1.4 90 34-139 1-91 (180)
156 3d8b_A Fidgetin-like protein 1 96.9 0.00078 2.7E-08 64.2 4.8 36 30-65 115-150 (357)
157 1sxj_A Activator 1 95 kDa subu 96.9 0.00082 2.8E-08 67.3 5.2 35 31-65 76-110 (516)
158 3pfi_A Holliday junction ATP-d 96.8 0.00069 2.4E-08 63.2 4.1 34 31-64 54-87 (338)
159 3shw_A Tight junction protein 96.8 0.0034 1.1E-07 62.6 9.2 98 30-166 222-319 (468)
160 3vfd_A Spastin; ATPase, microt 96.8 0.00096 3.3E-08 64.1 5.2 35 31-65 147-181 (389)
161 3pxg_A Negative regulator of g 96.8 0.0011 3.8E-08 65.6 5.7 36 30-65 199-244 (468)
162 3hjn_A DTMP kinase, thymidylat 96.8 0.0043 1.5E-07 54.3 8.9 23 34-56 2-24 (197)
163 1g41_A Heat shock protein HSLU 96.8 0.00064 2.2E-08 67.4 3.9 35 31-65 49-83 (444)
164 1ixz_A ATP-dependent metallopr 96.8 0.0007 2.4E-08 60.7 3.8 32 34-65 51-82 (254)
165 2r62_A Cell division protease 96.8 0.00029 9.8E-09 63.6 0.8 34 32-65 44-77 (268)
166 2x8a_A Nuclear valosin-contain 96.8 0.00096 3.3E-08 61.4 4.3 32 34-65 46-77 (274)
167 4b4t_H 26S protease regulatory 96.8 0.00082 2.8E-08 67.0 4.1 38 30-67 241-278 (467)
168 4b4t_I 26S protease regulatory 96.8 0.0011 3.7E-08 65.6 4.9 39 29-67 213-251 (437)
169 1svm_A Large T antigen; AAA+ f 96.7 0.00095 3.2E-08 64.7 4.4 35 29-63 166-200 (377)
170 3n70_A Transport activator; si 96.7 0.00075 2.6E-08 55.7 2.9 26 31-56 23-48 (145)
171 2v9p_A Replication protein E1; 96.7 0.0011 3.8E-08 62.5 4.3 34 29-62 123-156 (305)
172 2c9o_A RUVB-like 1; hexameric 96.6 0.0011 3.8E-08 65.2 4.2 38 32-69 63-102 (456)
173 1iy2_A ATP-dependent metallopr 96.6 0.0012 4E-08 60.3 3.8 32 34-65 75-106 (278)
174 3pxi_A Negative regulator of g 96.6 0.002 6.7E-08 67.4 5.9 36 30-65 199-244 (758)
175 3tmk_A Thymidylate kinase; pho 96.6 0.0012 4.2E-08 59.1 3.6 30 29-58 2-31 (216)
176 2w58_A DNAI, primosome compone 96.6 0.0011 3.8E-08 57.1 3.2 24 33-56 55-78 (202)
177 3u61_B DNA polymerase accessor 96.6 0.0013 4.5E-08 60.9 3.9 35 30-64 46-80 (324)
178 3dm5_A SRP54, signal recogniti 96.5 0.005 1.7E-07 60.9 8.1 37 31-67 99-140 (443)
179 2zan_A Vacuolar protein sortin 96.5 0.0019 6.5E-08 63.5 5.0 35 31-65 166-201 (444)
180 1in4_A RUVB, holliday junction 96.5 0.0014 4.7E-08 61.8 3.8 30 32-61 51-80 (334)
181 1njg_A DNA polymerase III subu 96.5 0.0014 4.9E-08 56.3 3.5 26 32-57 45-70 (250)
182 2vp4_A Deoxynucleoside kinase; 96.5 0.0012 4E-08 58.8 3.0 30 30-60 18-47 (230)
183 3co5_A Putative two-component 96.5 0.00067 2.3E-08 56.0 1.3 32 32-64 27-58 (143)
184 1hqc_A RUVB; extended AAA-ATPa 96.5 0.0011 3.8E-08 61.1 2.9 31 31-61 37-67 (324)
185 3aez_A Pantothenate kinase; tr 96.5 0.0014 4.9E-08 61.7 3.6 38 29-66 87-131 (312)
186 2qby_B CDC6 homolog 3, cell di 96.5 0.0018 6.1E-08 60.9 4.1 35 30-64 43-88 (384)
187 4fcw_A Chaperone protein CLPB; 96.5 0.0014 4.9E-08 60.0 3.3 24 33-56 48-71 (311)
188 2eyu_A Twitching motility prot 96.4 0.0018 6.3E-08 59.3 3.9 28 29-56 22-49 (261)
189 2v1u_A Cell division control p 96.4 0.0013 4.5E-08 61.5 2.9 27 30-56 42-68 (387)
190 1l8q_A Chromosomal replication 96.4 0.0015 5.1E-08 60.8 3.2 33 32-64 37-72 (324)
191 1xjc_A MOBB protein homolog; s 96.4 0.0017 5.7E-08 56.2 3.2 25 32-56 4-28 (169)
192 2chg_A Replication factor C sm 96.4 0.0017 5.8E-08 55.3 3.1 24 33-56 39-62 (226)
193 1np6_A Molybdopterin-guanine d 96.4 0.0019 6.4E-08 55.9 3.3 26 31-56 5-30 (174)
194 2cvh_A DNA repair and recombin 96.3 0.0027 9.3E-08 54.9 4.3 25 30-54 18-42 (220)
195 3hu3_A Transitional endoplasmi 96.3 0.0026 8.8E-08 63.6 4.7 36 30-65 236-271 (489)
196 2qby_A CDC6 homolog 1, cell di 96.3 0.002 6.8E-08 60.1 3.6 35 30-64 43-83 (386)
197 2ehv_A Hypothetical protein PH 96.3 0.0019 6.5E-08 56.9 3.3 24 30-53 28-51 (251)
198 4a74_A DNA repair and recombin 96.3 0.0019 6.6E-08 56.1 3.2 26 30-55 23-48 (231)
199 2f1r_A Molybdopterin-guanine d 96.3 0.0014 4.7E-08 56.5 2.2 24 33-56 3-26 (171)
200 1vma_A Cell division protein F 96.3 0.0029 9.8E-08 59.6 4.6 27 30-56 102-128 (306)
201 3uk6_A RUVB-like 2; hexameric 96.3 0.0023 7.9E-08 60.1 3.9 27 32-58 70-96 (368)
202 1ye8_A Protein THEP1, hypothet 96.3 0.0019 6.5E-08 55.7 2.9 25 34-58 2-26 (178)
203 1fnn_A CDC6P, cell division co 96.3 0.0025 8.5E-08 59.8 3.9 32 33-64 45-80 (389)
204 3cf2_A TER ATPase, transitiona 96.3 0.0026 8.9E-08 67.4 4.4 38 30-67 236-273 (806)
205 3pvs_A Replication-associated 96.3 0.0033 1.1E-07 62.1 4.8 33 32-64 50-82 (447)
206 3pxi_A Negative regulator of g 96.2 0.015 5E-07 60.8 9.9 31 34-64 523-556 (758)
207 3te6_A Regulatory protein SIR3 96.2 0.0022 7.5E-08 60.8 3.3 28 29-56 42-69 (318)
208 2r44_A Uncharacterized protein 96.2 0.0026 9E-08 59.2 3.8 30 33-62 47-76 (331)
209 2ce7_A Cell division protein F 96.2 0.0025 8.6E-08 63.6 3.8 34 32-65 49-82 (476)
210 1qvr_A CLPB protein; coiled co 96.2 0.016 5.4E-07 61.5 10.2 35 31-65 190-234 (854)
211 1htw_A HI0065; nucleotide-bind 96.2 0.0034 1.2E-07 53.2 4.0 27 30-56 31-57 (158)
212 3p32_A Probable GTPase RV1496/ 96.2 0.018 6.2E-07 54.7 9.5 40 30-69 77-121 (355)
213 2orw_A Thymidine kinase; TMTK, 96.2 0.0026 8.9E-08 55.1 3.2 25 32-56 3-27 (184)
214 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0029 9.9E-08 54.8 3.5 26 30-55 21-46 (235)
215 2bjv_A PSP operon transcriptio 96.1 0.0032 1.1E-07 56.7 3.8 26 32-57 29-54 (265)
216 1rj9_A FTSY, signal recognitio 96.1 0.0029 1E-07 59.3 3.5 26 31-56 101-126 (304)
217 3m6a_A ATP-dependent protease 96.1 0.0037 1.3E-07 63.1 4.4 32 31-62 107-138 (543)
218 2z4s_A Chromosomal replication 96.1 0.0049 1.7E-07 60.5 5.1 25 32-56 130-154 (440)
219 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0014 4.8E-08 63.2 1.1 29 32-60 24-52 (359)
220 3b9q_A Chloroplast SRP recepto 96.1 0.0036 1.2E-07 58.7 3.9 28 29-56 97-124 (302)
221 3tif_A Uncharacterized ABC tra 96.0 0.0029 1E-07 56.9 2.9 30 27-56 26-55 (235)
222 1ypw_A Transitional endoplasmi 96.0 0.0044 1.5E-07 65.6 4.5 36 30-65 236-271 (806)
223 3kl4_A SRP54, signal recogniti 96.0 0.005 1.7E-07 60.8 4.6 37 30-66 95-136 (433)
224 1n0w_A DNA repair protein RAD5 96.0 0.0036 1.2E-07 54.9 3.2 26 30-55 22-47 (243)
225 2dr3_A UPF0273 protein PH0284; 96.0 0.0039 1.3E-07 54.8 3.4 26 30-55 21-46 (247)
226 2gza_A Type IV secretion syste 96.0 0.0033 1.1E-07 60.2 3.1 27 31-57 174-200 (361)
227 3kta_A Chromosome segregation 95.9 0.0053 1.8E-07 51.8 4.0 27 32-58 26-52 (182)
228 2px0_A Flagellar biosynthesis 95.9 0.004 1.4E-07 58.2 3.5 36 30-65 103-144 (296)
229 2ewv_A Twitching motility prot 95.9 0.0039 1.3E-07 60.0 3.5 27 30-56 134-160 (372)
230 1ko7_A HPR kinase/phosphatase; 95.9 0.0048 1.7E-07 58.4 4.1 39 31-70 143-181 (314)
231 2dhr_A FTSH; AAA+ protein, hex 95.9 0.0051 1.7E-07 61.8 4.4 34 32-65 64-97 (499)
232 1zu4_A FTSY; GTPase, signal re 95.9 0.0062 2.1E-07 57.5 4.8 37 29-65 102-143 (320)
233 3e70_C DPA, signal recognition 95.9 0.0042 1.5E-07 58.9 3.6 27 30-56 127-153 (328)
234 1lw7_A Transcriptional regulat 95.9 0.0072 2.5E-07 57.5 5.2 27 32-58 170-196 (365)
235 3jvv_A Twitching mobility prot 95.9 0.0042 1.4E-07 59.7 3.5 27 30-56 121-147 (356)
236 1yrb_A ATP(GTP)binding protein 95.9 0.0078 2.7E-07 53.7 5.0 38 28-65 10-51 (262)
237 1xx6_A Thymidine kinase; NESG, 95.9 0.0054 1.8E-07 53.8 3.8 27 30-56 6-32 (191)
238 3czq_A Putative polyphosphate 95.8 0.037 1.3E-06 52.1 9.5 111 30-174 84-215 (304)
239 2wsm_A Hydrogenase expression/ 95.8 0.0084 2.9E-07 51.9 4.8 35 30-64 28-66 (221)
240 1g8p_A Magnesium-chelatase 38 95.8 0.0038 1.3E-07 58.0 2.6 26 33-58 46-71 (350)
241 2og2_A Putative signal recogni 95.8 0.0056 1.9E-07 58.9 3.9 28 29-56 154-181 (359)
242 2cbz_A Multidrug resistance-as 95.8 0.0042 1.5E-07 56.0 2.9 29 28-56 27-55 (237)
243 1p9r_A General secretion pathw 95.8 0.0053 1.8E-07 60.3 3.7 28 30-57 165-192 (418)
244 2qgz_A Helicase loader, putati 95.7 0.005 1.7E-07 57.6 3.3 25 32-56 152-176 (308)
245 1dek_A Deoxynucleoside monopho 95.7 0.0061 2.1E-07 55.5 3.8 32 33-64 2-33 (241)
246 3ch4_B Pmkase, phosphomevalona 95.7 0.0079 2.7E-07 53.5 4.4 40 28-67 7-50 (202)
247 1knx_A Probable HPR(Ser) kinas 95.7 0.0049 1.7E-07 58.4 3.1 39 31-70 146-184 (312)
248 2pcj_A ABC transporter, lipopr 95.7 0.0039 1.4E-07 55.6 2.3 28 29-56 27-54 (224)
249 1mv5_A LMRA, multidrug resista 95.7 0.0049 1.7E-07 55.6 2.9 28 29-56 25-52 (243)
250 1cr0_A DNA primase/helicase; R 95.7 0.006 2E-07 56.0 3.5 28 29-56 32-59 (296)
251 1jr3_A DNA polymerase III subu 95.7 0.0063 2.2E-07 56.9 3.7 27 32-58 38-64 (373)
252 1b0u_A Histidine permease; ABC 95.7 0.0049 1.7E-07 56.4 2.8 29 28-56 28-56 (262)
253 2qen_A Walker-type ATPase; unk 95.7 0.0058 2E-07 56.2 3.4 33 33-65 32-64 (350)
254 1r6b_X CLPA protein; AAA+, N-t 95.7 0.0072 2.4E-07 63.0 4.4 32 33-64 489-520 (758)
255 2onk_A Molybdate/tungstate ABC 95.6 0.0057 2E-07 55.3 3.2 27 29-56 22-48 (240)
256 2b8t_A Thymidine kinase; deoxy 95.6 0.0065 2.2E-07 54.6 3.5 27 30-56 10-36 (223)
257 4g1u_C Hemin import ATP-bindin 95.6 0.0048 1.6E-07 56.7 2.5 28 29-56 34-61 (266)
258 3gfo_A Cobalt import ATP-bindi 95.6 0.0048 1.6E-07 57.1 2.4 28 29-56 31-58 (275)
259 2v3c_C SRP54, signal recogniti 95.6 0.0071 2.4E-07 59.6 3.7 36 31-66 98-138 (432)
260 2ghi_A Transport protein; mult 95.5 0.0059 2E-07 55.8 2.9 28 29-56 43-70 (260)
261 2ff7_A Alpha-hemolysin translo 95.5 0.0053 1.8E-07 55.7 2.5 28 29-56 32-59 (247)
262 2pze_A Cystic fibrosis transme 95.5 0.0059 2E-07 54.6 2.7 28 29-56 31-58 (229)
263 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0064 2.2E-07 55.1 3.0 27 29-55 26-52 (250)
264 1nlf_A Regulatory protein REPA 95.5 0.0066 2.3E-07 55.3 3.1 26 30-55 28-53 (279)
265 2zu0_C Probable ATP-dependent 95.5 0.0073 2.5E-07 55.4 3.4 27 29-55 43-69 (267)
266 2zts_A Putative uncharacterize 95.5 0.0081 2.8E-07 52.7 3.5 26 30-55 28-53 (251)
267 1g6h_A High-affinity branched- 95.5 0.0059 2E-07 55.6 2.7 28 29-56 30-57 (257)
268 2hf9_A Probable hydrogenase ni 95.5 0.0086 2.9E-07 52.0 3.6 27 30-56 36-62 (226)
269 2ixe_A Antigen peptide transpo 95.5 0.0063 2.2E-07 56.0 2.9 28 29-56 42-69 (271)
270 1pzn_A RAD51, DNA repair and r 95.5 0.0098 3.4E-07 56.7 4.3 27 30-56 129-155 (349)
271 2olj_A Amino acid ABC transpor 95.5 0.0063 2.2E-07 55.9 2.8 28 29-56 47-74 (263)
272 3nh6_A ATP-binding cassette SU 95.5 0.0053 1.8E-07 57.8 2.3 28 29-56 77-104 (306)
273 1ji0_A ABC transporter; ATP bi 95.5 0.0058 2E-07 55.1 2.5 28 29-56 29-56 (240)
274 3b85_A Phosphate starvation-in 95.4 0.0062 2.1E-07 53.9 2.6 25 31-55 21-45 (208)
275 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.0057 1.9E-07 57.9 2.5 27 31-57 170-196 (330)
276 2yhs_A FTSY, cell division pro 95.4 0.0087 3E-07 60.1 3.9 28 29-56 290-317 (503)
277 3cf2_A TER ATPase, transitiona 95.4 0.011 3.8E-07 62.6 4.6 39 30-68 509-547 (806)
278 1vpl_A ABC transporter, ATP-bi 95.4 0.0072 2.5E-07 55.2 2.8 28 29-56 38-65 (256)
279 2i3b_A HCR-ntpase, human cance 95.4 0.0075 2.6E-07 52.6 2.8 24 33-56 2-25 (189)
280 2yz2_A Putative ABC transporte 95.4 0.0074 2.5E-07 55.3 2.9 29 28-56 29-57 (266)
281 1nij_A Hypothetical protein YJ 95.4 0.0092 3.1E-07 55.9 3.6 26 31-56 3-28 (318)
282 1ojl_A Transcriptional regulat 95.3 0.013 4.4E-07 54.5 4.5 36 31-66 24-64 (304)
283 1sxj_E Activator 1 40 kDa subu 95.3 0.0074 2.5E-07 56.3 2.8 22 35-56 39-60 (354)
284 1sgw_A Putative ABC transporte 95.3 0.006 2.1E-07 54.3 2.0 28 29-56 32-59 (214)
285 2lkc_A Translation initiation 95.3 0.013 4.5E-07 48.3 4.0 26 29-54 5-30 (178)
286 2oap_1 GSPE-2, type II secreti 95.3 0.0077 2.6E-07 60.6 3.0 28 30-57 258-285 (511)
287 1sxj_D Activator 1 41 kDa subu 95.3 0.0079 2.7E-07 55.8 2.8 25 33-57 59-83 (353)
288 1nrj_B SR-beta, signal recogni 95.2 0.012 4.2E-07 50.6 3.8 27 30-56 10-36 (218)
289 2fna_A Conserved hypothetical 95.2 0.0098 3.4E-07 54.7 3.3 32 33-64 31-64 (357)
290 2qi9_C Vitamin B12 import ATP- 95.2 0.0076 2.6E-07 54.9 2.5 29 29-57 23-51 (249)
291 2ihy_A ABC transporter, ATP-bi 95.2 0.0077 2.6E-07 55.8 2.5 28 29-56 44-71 (279)
292 1u0j_A DNA replication protein 95.2 0.015 5E-07 53.9 4.3 28 30-57 102-129 (267)
293 2nq2_C Hypothetical ABC transp 95.2 0.0081 2.8E-07 54.7 2.5 28 29-56 28-55 (253)
294 1r6b_X CLPA protein; AAA+, N-t 95.1 0.016 5.4E-07 60.4 4.9 36 30-65 205-250 (758)
295 1iqp_A RFCS; clamp loader, ext 95.1 0.013 4.4E-07 53.5 3.8 25 33-57 47-71 (327)
296 2j37_W Signal recognition part 95.1 0.015 5.1E-07 58.4 4.5 36 30-65 99-139 (504)
297 1sxj_C Activator 1 40 kDa subu 95.1 0.0091 3.1E-07 55.9 2.8 23 35-57 49-71 (340)
298 3fvq_A Fe(3+) IONS import ATP- 95.1 0.011 3.6E-07 57.0 3.3 28 29-56 27-54 (359)
299 1ls1_A Signal recognition part 95.1 0.016 5.3E-07 54.0 4.3 26 31-56 97-122 (295)
300 2chq_A Replication factor C sm 95.1 0.011 3.7E-07 53.8 3.0 23 34-56 40-62 (319)
301 2www_A Methylmalonic aciduria 95.1 0.022 7.5E-07 54.2 5.3 35 31-65 73-112 (349)
302 2yyz_A Sugar ABC transporter, 95.0 0.012 4.3E-07 56.5 3.4 28 29-56 26-53 (359)
303 3rlf_A Maltose/maltodextrin im 95.0 0.013 4.3E-07 57.0 3.4 28 29-56 26-53 (381)
304 2z43_A DNA repair and recombin 95.0 0.017 5.7E-07 54.2 4.2 27 30-56 105-131 (324)
305 1j8m_F SRP54, signal recogniti 95.0 0.016 5.5E-07 54.1 4.0 25 32-56 98-122 (297)
306 2dyk_A GTP-binding protein; GT 95.0 0.016 5.4E-07 46.8 3.5 24 33-56 2-25 (161)
307 2wji_A Ferrous iron transport 95.0 0.015 5.2E-07 48.1 3.4 24 32-55 3-26 (165)
308 2it1_A 362AA long hypothetical 95.0 0.013 4.4E-07 56.4 3.4 28 29-56 26-53 (362)
309 1sxj_B Activator 1 37 kDa subu 95.0 0.013 4.3E-07 53.5 3.2 23 34-56 44-66 (323)
310 1v5w_A DMC1, meiotic recombina 94.9 0.022 7.4E-07 54.0 4.8 26 30-55 120-145 (343)
311 2bbs_A Cystic fibrosis transme 94.9 0.011 3.8E-07 55.0 2.7 28 29-56 61-88 (290)
312 3d31_A Sulfate/molybdate ABC t 94.9 0.012 3.9E-07 56.5 2.9 28 29-56 23-50 (348)
313 1v43_A Sugar-binding transport 94.9 0.014 4.6E-07 56.5 3.4 29 28-56 33-61 (372)
314 1z47_A CYSA, putative ABC-tran 94.9 0.012 4.2E-07 56.5 3.0 28 29-56 38-65 (355)
315 1ypw_A Transitional endoplasmi 94.9 0.0065 2.2E-07 64.3 1.2 36 30-65 509-544 (806)
316 3ihw_A Centg3; RAS, centaurin, 94.9 0.018 6E-07 48.8 3.7 25 31-55 19-43 (184)
317 3nbx_X ATPase RAVA; AAA+ ATPas 94.9 0.013 4.5E-07 58.7 3.3 27 32-58 41-67 (500)
318 1f2t_A RAD50 ABC-ATPase; DNA d 94.9 0.017 5.8E-07 48.1 3.5 25 32-56 23-47 (149)
319 2f9l_A RAB11B, member RAS onco 94.9 0.014 4.9E-07 49.8 3.1 24 32-55 5-28 (199)
320 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.014 4.7E-07 55.7 3.2 25 31-55 122-146 (331)
321 2wjg_A FEOB, ferrous iron tran 94.9 0.017 5.9E-07 48.2 3.5 25 31-55 6-30 (188)
322 1a5t_A Delta prime, HOLB; zinc 94.8 0.016 5.5E-07 54.4 3.6 30 30-59 22-51 (334)
323 1oxx_K GLCV, glucose, ABC tran 94.8 0.012 3.9E-07 56.5 2.6 28 29-56 28-55 (353)
324 1pui_A ENGB, probable GTP-bind 94.8 0.011 3.7E-07 50.6 2.2 27 28-54 22-48 (210)
325 3tui_C Methionine import ATP-b 94.8 0.015 5.1E-07 56.1 3.4 29 28-56 50-78 (366)
326 2ged_A SR-beta, signal recogni 94.8 0.02 6.8E-07 48.1 3.8 27 30-56 46-72 (193)
327 1g29_1 MALK, maltose transport 94.8 0.014 4.8E-07 56.4 3.0 28 29-56 26-53 (372)
328 1svi_A GTP-binding protein YSX 94.7 0.023 7.8E-07 47.7 4.0 26 30-55 21-46 (195)
329 3pqc_A Probable GTP-binding pr 94.7 0.022 7.6E-07 47.5 3.9 25 31-55 22-46 (195)
330 2ffh_A Protein (FFH); SRP54, s 94.7 0.021 7.2E-07 56.1 4.3 36 31-66 97-137 (425)
331 1w5s_A Origin recognition comp 94.7 0.015 5E-07 55.0 3.1 27 30-56 48-76 (412)
332 2xxa_A Signal recognition part 94.7 0.018 6E-07 56.7 3.7 36 30-65 98-139 (433)
333 3gd7_A Fusion complex of cysti 94.7 0.016 5.4E-07 56.4 3.3 27 29-55 44-70 (390)
334 3hr8_A Protein RECA; alpha and 94.7 0.017 6E-07 55.4 3.5 27 30-56 59-85 (356)
335 2pjz_A Hypothetical protein ST 94.7 0.014 4.8E-07 53.6 2.7 27 29-56 28-54 (263)
336 1oix_A RAS-related protein RAB 94.7 0.018 6.1E-07 49.0 3.2 24 33-56 30-53 (191)
337 3bh0_A DNAB-like replicative h 94.6 0.022 7.4E-07 53.3 3.9 26 30-55 66-91 (315)
338 2p67_A LAO/AO transport system 94.6 0.027 9.2E-07 53.2 4.6 38 29-66 53-95 (341)
339 1upt_A ARL1, ADP-ribosylation 94.6 0.027 9.4E-07 45.9 4.1 26 30-55 5-30 (171)
340 2ce2_X GTPase HRAS; signaling 94.6 0.019 6.5E-07 46.2 3.0 23 33-55 4-26 (166)
341 2j9r_A Thymidine kinase; TK1, 94.6 0.022 7.6E-07 51.0 3.7 27 30-56 26-52 (214)
342 1z2a_A RAS-related protein RAB 94.6 0.019 6.5E-07 46.6 3.0 24 32-55 5-28 (168)
343 3sop_A Neuronal-specific septi 94.6 0.018 6.1E-07 52.9 3.1 24 33-56 3-26 (270)
344 3llu_A RAS-related GTP-binding 94.5 0.018 6.3E-07 48.9 2.9 27 30-56 18-44 (196)
345 2fn4_A P23, RAS-related protei 94.5 0.024 8.3E-07 46.5 3.6 25 31-55 8-32 (181)
346 1qvr_A CLPB protein; coiled co 94.5 0.018 6E-07 61.1 3.4 32 33-64 589-623 (854)
347 2qm8_A GTPase/ATPase; G protei 94.5 0.025 8.6E-07 53.5 4.1 28 29-56 52-79 (337)
348 2gco_A H9, RHO-related GTP-bin 94.5 0.024 8.1E-07 48.4 3.5 28 28-55 21-48 (201)
349 2i1q_A DNA repair and recombin 94.4 0.022 7.6E-07 53.0 3.5 26 30-55 96-121 (322)
350 2zej_A Dardarin, leucine-rich 94.4 0.017 5.8E-07 48.6 2.5 21 34-54 4-24 (184)
351 2zr9_A Protein RECA, recombina 94.4 0.021 7.2E-07 54.5 3.4 25 31-55 60-84 (349)
352 2npi_A Protein CLP1; CLP1-PCF1 94.4 0.017 5.7E-07 57.3 2.6 28 29-56 135-162 (460)
353 1kao_A RAP2A; GTP-binding prot 94.3 0.028 9.6E-07 45.3 3.5 24 32-55 3-26 (167)
354 3lda_A DNA repair protein RAD5 94.3 0.02 7E-07 55.7 3.1 26 30-55 176-201 (400)
355 2r2a_A Uncharacterized protein 94.3 0.03 1E-06 49.2 3.9 24 32-55 5-28 (199)
356 2fv8_A H6, RHO-related GTP-bin 94.3 0.023 7.9E-07 48.7 3.1 28 28-55 21-48 (207)
357 3c5c_A RAS-like protein 12; GD 94.3 0.027 9.1E-07 47.6 3.4 25 31-55 20-44 (187)
358 2h57_A ADP-ribosylation factor 94.3 0.021 7.1E-07 48.1 2.7 26 30-55 19-44 (190)
359 2gj8_A MNME, tRNA modification 94.3 0.027 9.3E-07 47.1 3.4 24 32-55 4-27 (172)
360 1u8z_A RAS-related protein RAL 94.2 0.03 1E-06 45.2 3.5 24 32-55 4-27 (168)
361 3con_A GTPase NRAS; structural 94.2 0.025 8.4E-07 47.4 3.0 24 32-55 21-44 (190)
362 3k1j_A LON protease, ATP-depen 94.2 0.024 8.2E-07 57.8 3.5 27 31-57 59-85 (604)
363 1ek0_A Protein (GTP-binding pr 94.2 0.027 9.1E-07 45.7 3.2 23 33-55 4-26 (170)
364 1moz_A ARL1, ADP-ribosylation 94.2 0.025 8.4E-07 46.9 2.9 24 30-53 16-39 (183)
365 1g16_A RAS-related protein SEC 94.2 0.026 8.8E-07 45.9 3.0 23 33-55 4-26 (170)
366 1ky3_A GTP-binding protein YPT 94.2 0.029 1E-06 46.1 3.4 25 31-55 7-31 (182)
367 1z0j_A RAB-22, RAS-related pro 94.2 0.028 9.4E-07 45.7 3.1 23 33-55 7-29 (170)
368 1u94_A RECA protein, recombina 94.1 0.027 9.3E-07 53.9 3.5 26 30-55 61-86 (356)
369 2atv_A RERG, RAS-like estrogen 94.1 0.034 1.2E-06 47.0 3.8 25 31-55 27-51 (196)
370 3bc1_A RAS-related protein RAB 94.1 0.03 1E-06 46.5 3.3 24 32-55 11-34 (195)
371 3q85_A GTP-binding protein REM 94.1 0.028 9.5E-07 45.8 3.0 21 34-54 4-24 (169)
372 2b6h_A ADP-ribosylation factor 94.1 0.038 1.3E-06 46.9 3.9 29 26-54 23-51 (192)
373 2nzj_A GTP-binding protein REM 94.0 0.033 1.1E-06 45.6 3.4 24 32-55 4-27 (175)
374 2r6a_A DNAB helicase, replicat 94.0 0.033 1.1E-06 54.7 3.9 26 30-55 201-226 (454)
375 2erx_A GTP-binding protein DI- 94.0 0.032 1.1E-06 45.3 3.3 22 33-54 4-25 (172)
376 3lxw_A GTPase IMAP family memb 94.0 0.029 1E-06 50.3 3.3 25 31-55 20-44 (247)
377 4dhe_A Probable GTP-binding pr 94.0 0.03 1E-06 48.3 3.1 26 30-55 27-52 (223)
378 1c1y_A RAS-related protein RAP 94.0 0.03 1E-06 45.3 3.0 23 33-55 4-26 (167)
379 1z08_A RAS-related protein RAB 94.0 0.032 1.1E-06 45.5 3.1 24 32-55 6-29 (170)
380 2yv5_A YJEQ protein; hydrolase 94.0 0.032 1.1E-06 51.9 3.5 25 31-56 164-188 (302)
381 1wms_A RAB-9, RAB9, RAS-relate 93.9 0.032 1.1E-06 45.8 3.1 24 32-55 7-30 (177)
382 2orv_A Thymidine kinase; TP4A 93.9 0.033 1.1E-06 50.5 3.4 27 30-56 17-43 (234)
383 1r2q_A RAS-related protein RAB 93.9 0.027 9.3E-07 45.6 2.6 24 32-55 6-29 (170)
384 2r8r_A Sensor protein; KDPD, P 93.9 0.05 1.7E-06 49.2 4.5 34 32-65 6-44 (228)
385 3b5x_A Lipid A export ATP-bind 93.9 0.028 9.7E-07 56.9 3.2 27 30-56 367-393 (582)
386 3llm_A ATP-dependent RNA helic 93.9 0.033 1.1E-06 49.3 3.3 21 32-52 76-96 (235)
387 3lxx_A GTPase IMAP family memb 93.9 0.032 1.1E-06 49.2 3.3 26 30-55 27-52 (239)
388 2a5j_A RAS-related protein RAB 93.9 0.04 1.4E-06 46.4 3.7 24 32-55 21-44 (191)
389 3q72_A GTP-binding protein RAD 93.9 0.029 1E-06 45.6 2.7 21 34-54 4-24 (166)
390 3b60_A Lipid A export ATP-bind 93.9 0.027 9.1E-07 57.1 3.0 27 30-56 367-393 (582)
391 1r8s_A ADP-ribosylation factor 93.8 0.037 1.3E-06 44.9 3.3 22 34-55 2-23 (164)
392 2y8e_A RAB-protein 6, GH09086P 93.8 0.031 1.1E-06 45.8 2.9 22 33-54 15-36 (179)
393 2hxs_A RAB-26, RAS-related pro 93.8 0.042 1.4E-06 45.1 3.7 25 31-55 5-29 (178)
394 2p5s_A RAS and EF-hand domain 93.8 0.04 1.4E-06 46.8 3.6 26 30-55 26-51 (199)
395 3tw8_B RAS-related protein RAB 93.8 0.031 1.1E-06 45.9 2.8 23 32-54 9-31 (181)
396 1z06_A RAS-related protein RAB 93.8 0.038 1.3E-06 46.4 3.4 26 30-55 18-43 (189)
397 3clv_A RAB5 protein, putative; 93.7 0.049 1.7E-06 45.3 4.0 24 32-55 7-30 (208)
398 1m2o_B GTP-binding protein SAR 93.7 0.038 1.3E-06 46.9 3.3 26 30-55 21-46 (190)
399 3pih_A Uvrabc system protein A 93.7 0.021 7E-07 61.4 1.9 23 29-51 21-43 (916)
400 4dsu_A GTPase KRAS, isoform 2B 93.7 0.035 1.2E-06 46.0 3.0 24 32-55 4-27 (189)
401 1ksh_A ARF-like protein 2; sma 93.7 0.041 1.4E-06 45.8 3.5 25 30-54 16-40 (186)
402 2vf7_A UVRA2, excinuclease ABC 93.7 0.025 8.5E-07 60.2 2.5 23 29-51 33-55 (842)
403 3qks_A DNA double-strand break 93.7 0.032 1.1E-06 48.7 2.9 28 31-58 22-49 (203)
404 3qf7_A RAD50; ABC-ATPase, ATPa 93.7 0.039 1.3E-06 52.7 3.7 24 32-55 23-46 (365)
405 1ihu_A Arsenical pump-driving 93.7 0.051 1.8E-06 54.9 4.7 39 27-65 3-46 (589)
406 2ygr_A Uvrabc system protein A 93.7 0.024 8.3E-07 61.2 2.4 23 29-51 43-65 (993)
407 2q6t_A DNAB replication FORK h 93.7 0.04 1.4E-06 53.9 3.8 26 30-55 198-223 (444)
408 4ag6_A VIRB4 ATPase, type IV s 93.7 0.034 1.2E-06 53.1 3.2 39 31-69 34-75 (392)
409 2fz4_A DNA repair protein RAD2 93.6 0.048 1.6E-06 48.7 3.9 25 34-58 110-134 (237)
410 3qf4_B Uncharacterized ABC tra 93.6 0.026 9E-07 57.4 2.5 28 29-56 378-405 (598)
411 2r6f_A Excinuclease ABC subuni 93.6 0.025 8.7E-07 60.9 2.4 23 29-51 41-63 (972)
412 1z0f_A RAB14, member RAS oncog 93.6 0.04 1.4E-06 45.1 3.2 24 32-55 15-38 (179)
413 2cxx_A Probable GTP-binding pr 93.6 0.036 1.2E-06 46.1 2.8 22 34-55 3-24 (190)
414 1u0l_A Probable GTPase ENGC; p 93.6 0.032 1.1E-06 51.7 2.8 26 31-56 168-193 (301)
415 1zj6_A ADP-ribosylation factor 93.6 0.045 1.5E-06 45.8 3.4 27 29-55 13-39 (187)
416 2a9k_A RAS-related protein RAL 93.5 0.043 1.5E-06 45.2 3.3 24 32-55 18-41 (187)
417 2oil_A CATX-8, RAS-related pro 93.5 0.042 1.4E-06 46.2 3.2 24 32-55 25-48 (193)
418 1fzq_A ADP-ribosylation factor 93.5 0.049 1.7E-06 45.7 3.5 26 30-55 14-39 (181)
419 2rcn_A Probable GTPase ENGC; Y 93.5 0.043 1.5E-06 52.8 3.5 26 31-56 214-239 (358)
420 2bme_A RAB4A, RAS-related prot 93.5 0.042 1.4E-06 45.6 3.0 24 32-55 10-33 (186)
421 1z6t_A APAF-1, apoptotic prote 93.5 0.045 1.5E-06 54.7 3.8 25 30-54 145-169 (591)
422 2h17_A ADP-ribosylation factor 93.4 0.041 1.4E-06 45.9 2.9 26 30-55 19-44 (181)
423 2yl4_A ATP-binding cassette SU 93.4 0.027 9.3E-07 57.2 2.1 27 30-56 368-394 (595)
424 4bas_A ADP-ribosylation factor 93.4 0.044 1.5E-06 46.0 3.1 25 30-54 15-39 (199)
425 1mh1_A RAC1; GTP-binding, GTPa 93.4 0.046 1.6E-06 45.1 3.2 24 32-55 5-28 (186)
426 1xp8_A RECA protein, recombina 93.4 0.043 1.5E-06 52.8 3.4 35 30-64 72-111 (366)
427 3czp_A Putative polyphosphate 93.4 0.17 5.8E-06 50.7 7.8 111 30-174 41-172 (500)
428 1f6b_A SAR1; gtpases, N-termin 93.3 0.049 1.7E-06 46.5 3.3 25 30-54 23-47 (198)
429 2qag_B Septin-6, protein NEDD5 93.3 0.038 1.3E-06 54.4 2.9 26 30-55 38-65 (427)
430 3kkq_A RAS-related protein M-R 93.3 0.054 1.8E-06 44.9 3.5 24 32-55 18-41 (183)
431 2fh5_B SR-beta, signal recogni 93.3 0.051 1.7E-06 46.5 3.4 25 31-55 6-30 (214)
432 1p6x_A Thymidine kinase; P-loo 93.3 0.032 1.1E-06 53.1 2.3 29 30-58 5-33 (334)
433 3qf4_A ABC transporter, ATP-bi 93.3 0.027 9.1E-07 57.3 1.8 27 30-56 367-393 (587)
434 2g6b_A RAS-related protein RAB 93.3 0.049 1.7E-06 44.8 3.2 24 32-55 10-33 (180)
435 2bov_A RAla, RAS-related prote 93.3 0.054 1.8E-06 45.7 3.5 24 32-55 14-37 (206)
436 4a82_A Cystic fibrosis transme 93.3 0.023 7.9E-07 57.6 1.3 28 29-56 364-391 (578)
437 1tq4_A IIGP1, interferon-induc 93.3 0.047 1.6E-06 53.4 3.5 24 32-55 69-92 (413)
438 3end_A Light-independent proto 93.2 0.061 2.1E-06 49.4 4.1 37 29-65 38-79 (307)
439 3bwd_D RAC-like GTP-binding pr 93.2 0.061 2.1E-06 44.3 3.7 25 31-55 7-31 (182)
440 1m7b_A RND3/RHOE small GTP-bin 93.2 0.052 1.8E-06 45.4 3.3 25 31-55 6-30 (184)
441 1zd9_A ADP-ribosylation factor 93.2 0.049 1.7E-06 45.8 3.1 26 30-55 20-45 (188)
442 2efe_B Small GTP-binding prote 93.2 0.048 1.6E-06 44.9 3.0 24 32-55 12-35 (181)
443 3f9v_A Minichromosome maintena 93.2 0.029 9.8E-07 57.3 2.0 30 34-63 329-358 (595)
444 3t1o_A Gliding protein MGLA; G 93.2 0.052 1.8E-06 45.2 3.3 26 32-57 14-39 (198)
445 2xtp_A GTPase IMAP family memb 93.2 0.053 1.8E-06 48.4 3.5 25 31-55 21-45 (260)
446 3t5g_A GTP-binding protein RHE 93.2 0.04 1.4E-06 45.6 2.5 23 32-54 6-28 (181)
447 2qu8_A Putative nucleolar GTP- 93.2 0.061 2.1E-06 46.9 3.8 25 31-55 28-52 (228)
448 2gf9_A RAS-related protein RAB 93.2 0.058 2E-06 45.2 3.5 24 32-55 22-45 (189)
449 3bgw_A DNAB-like replicative h 93.1 0.055 1.9E-06 53.2 3.7 27 30-56 195-221 (444)
450 3euj_A Chromosome partition pr 93.1 0.05 1.7E-06 54.4 3.4 26 30-56 28-53 (483)
451 2gf0_A GTP-binding protein DI- 93.1 0.069 2.4E-06 44.8 3.9 24 31-54 7-30 (199)
452 3tkl_A RAS-related protein RAB 93.1 0.052 1.8E-06 45.4 3.0 24 32-55 16-39 (196)
453 1yqt_A RNAse L inhibitor; ATP- 93.0 0.053 1.8E-06 54.6 3.6 27 30-56 45-71 (538)
454 1vg8_A RAS-related protein RAB 93.0 0.06 2E-06 45.5 3.4 25 31-55 7-31 (207)
455 4a1f_A DNAB helicase, replicat 93.0 0.061 2.1E-06 51.3 3.8 26 30-55 44-69 (338)
456 2iwr_A Centaurin gamma 1; ANK 93.0 0.051 1.7E-06 44.8 2.9 24 32-55 7-30 (178)
457 3qkt_A DNA double-strand break 93.0 0.06 2.1E-06 50.6 3.7 24 31-54 22-45 (339)
458 2atx_A Small GTP binding prote 93.0 0.05 1.7E-06 45.7 2.8 24 32-55 18-41 (194)
459 1qhl_A Protein (cell division 93.0 0.0099 3.4E-07 53.5 -1.7 25 33-57 28-52 (227)
460 2fg5_A RAB-22B, RAS-related pr 92.9 0.055 1.9E-06 45.6 3.0 24 32-55 23-46 (192)
461 4gzl_A RAS-related C3 botulinu 92.9 0.065 2.2E-06 45.9 3.5 26 30-55 28-53 (204)
462 3dz8_A RAS-related protein RAB 92.9 0.059 2E-06 45.3 3.2 25 32-56 23-47 (191)
463 2x77_A ADP-ribosylation factor 92.8 0.051 1.7E-06 45.5 2.7 24 30-53 20-43 (189)
464 1t9h_A YLOQ, probable GTPase E 92.8 0.034 1.2E-06 52.3 1.7 25 31-55 172-196 (307)
465 2j1l_A RHO-related GTP-binding 92.8 0.062 2.1E-06 46.4 3.2 24 31-54 33-56 (214)
466 1zbd_A Rabphilin-3A; G protein 92.8 0.058 2E-06 45.6 3.0 24 32-55 8-31 (203)
467 3rhf_A Putative polyphosphate 92.8 0.14 4.7E-06 47.9 5.7 113 31-177 74-207 (289)
468 1w4r_A Thymidine kinase; type 92.8 0.064 2.2E-06 47.3 3.3 27 29-55 17-43 (195)
469 1tf7_A KAIC; homohexamer, hexa 92.8 0.053 1.8E-06 54.2 3.1 23 30-52 37-59 (525)
470 1x3s_A RAS-related protein RAB 92.8 0.063 2.2E-06 44.7 3.2 24 32-55 15-38 (195)
471 3oes_A GTPase rhebl1; small GT 92.7 0.066 2.3E-06 45.5 3.3 25 31-55 23-47 (201)
472 2bcg_Y Protein YP2, GTP-bindin 92.7 0.061 2.1E-06 45.7 3.0 24 32-55 8-31 (206)
473 3ug7_A Arsenical pump-driving 92.7 0.091 3.1E-06 49.8 4.5 36 30-65 24-64 (349)
474 3ozx_A RNAse L inhibitor; ATP 92.7 0.05 1.7E-06 54.9 2.7 27 30-56 292-318 (538)
475 2dpy_A FLII, flagellum-specifi 92.7 0.1 3.5E-06 51.3 4.9 29 29-57 154-182 (438)
476 2il1_A RAB12; G-protein, GDP, 92.6 0.06 2E-06 45.5 2.9 23 32-54 26-48 (192)
477 1gwn_A RHO-related GTP-binding 92.6 0.069 2.4E-06 46.1 3.3 24 32-55 28-51 (205)
478 3k53_A Ferrous iron transport 92.6 0.074 2.5E-06 48.1 3.6 24 32-55 3-26 (271)
479 3ozx_A RNAse L inhibitor; ATP 92.6 0.064 2.2E-06 54.1 3.4 27 30-56 23-49 (538)
480 2a5y_B CED-4; apoptosis; HET: 92.6 0.074 2.5E-06 53.3 3.9 24 31-54 151-174 (549)
481 3cph_A RAS-related protein SEC 92.6 0.078 2.7E-06 45.0 3.5 25 31-55 19-43 (213)
482 1e69_A Chromosome segregation 92.6 0.055 1.9E-06 50.5 2.7 26 32-57 24-49 (322)
483 2qnr_A Septin-2, protein NEDD5 92.5 0.053 1.8E-06 50.4 2.6 22 33-54 19-40 (301)
484 3auy_A DNA double-strand break 92.5 0.071 2.4E-06 50.8 3.5 25 30-54 23-47 (371)
485 3cbq_A GTP-binding protein REM 92.5 0.057 2E-06 46.1 2.6 23 31-53 22-44 (195)
486 3cio_A ETK, tyrosine-protein k 92.5 0.1 3.5E-06 48.4 4.5 38 30-67 102-145 (299)
487 1q57_A DNA primase/helicase; d 92.5 0.064 2.2E-06 53.1 3.3 27 30-56 240-266 (503)
488 2woo_A ATPase GET3; tail-ancho 92.5 0.1 3.4E-06 49.1 4.4 36 31-66 18-58 (329)
489 3upu_A ATP-dependent DNA helic 92.5 0.07 2.4E-06 52.3 3.5 25 32-56 45-69 (459)
490 3j16_B RLI1P; ribosome recycli 92.4 0.072 2.5E-06 54.6 3.6 27 30-56 101-127 (608)
491 1tf7_A KAIC; homohexamer, hexa 92.4 0.063 2.2E-06 53.6 3.1 26 30-55 279-304 (525)
492 2ew1_A RAS-related protein RAB 92.4 0.07 2.4E-06 45.9 3.0 24 32-55 26-49 (201)
493 3reg_A RHO-like small GTPase; 92.4 0.076 2.6E-06 44.7 3.2 24 32-55 23-46 (194)
494 2o52_A RAS-related protein RAB 92.4 0.068 2.3E-06 45.5 2.9 23 32-54 25-47 (200)
495 3zq6_A Putative arsenical pump 92.4 0.09 3.1E-06 49.2 3.9 34 32-65 14-52 (324)
496 4f4c_A Multidrug resistance pr 92.3 0.054 1.8E-06 60.3 2.7 29 29-57 441-469 (1321)
497 4aby_A DNA repair protein RECN 92.3 0.051 1.7E-06 52.0 2.1 27 32-58 60-86 (415)
498 2cjw_A GTP-binding protein GEM 92.3 0.086 2.9E-06 44.8 3.4 24 32-55 6-29 (192)
499 1yqt_A RNAse L inhibitor; ATP- 92.3 0.07 2.4E-06 53.8 3.3 27 30-56 310-336 (538)
500 3e1s_A Exodeoxyribonuclease V, 92.2 0.071 2.4E-06 54.2 3.3 26 31-56 203-228 (574)
No 1
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=100.00 E-value=3.2e-71 Score=533.43 Aligned_cols=288 Identities=47% Similarity=0.804 Sum_probs=239.6
Q ss_pred cchhHHhhhcCCcccccccccccccccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChh
Q 020362 3 LSMTACKQAVQPLVTFQGVHKLEHFFRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEE 82 (327)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~ 82 (327)
+.+.+|+|. ||+..++ |...+..++++|+|+||||||||+||+.||++++++|||+|+||+|+||||+|+||+.+
T Consensus 16 ~~~~~~~~~-~~~~~~~----m~~~~~~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~e 90 (339)
T 3a8t_A 16 VAMAAAPTT-TTTTNVS----LRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVP 90 (339)
T ss_dssp ---------------------------CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSG
T ss_pred hhhhhccCC-CCccccc----cccccccCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHH
Confidence 345678777 4555443 33334456789999999999999999999999999999999999999999999999999
Q ss_pred hhcCccceeccccCC-CcccCHHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCc------hhh---------h
Q 020362 83 ECHGVPHHLLGIIEP-NANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDA------AEF---------Q 146 (327)
Q Consensus 83 E~~gvphhlid~~~~-~~~~s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~------~~~---------~ 146 (327)
|+.|+||||+|+.++ .+.|++++|++.+.++|+++.++|++||+||||++|++++++|.. +.. .
T Consensus 91 E~~gvphhlidi~~~~~e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~ 170 (339)
T 3a8t_A 91 DRGGVPHHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSE 170 (339)
T ss_dssp GGTTCCEESSSCBCGGGCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------C
T ss_pred HHcCCCEeeccccCcccCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccc
Confidence 999999999999999 889999999999999999999999999999999999999998741 100 1
Q ss_pred cccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcCCCC-------CcchhhhhccHHHHHHHHHcC------
Q 020362 147 LRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQAD-------YSRGIRRAIGVPELDQYIRAG------ 213 (327)
Q Consensus 147 ~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~~~-------~~~g~~qaIGykE~~~yl~~~------ 213 (327)
.++++++|||++++++|++||++|++.|+++|+++||+.|++.+.. ++.+++|+||||||.+||+|+
T Consensus 171 ~~~~~~~i~L~~~re~L~~RI~~R~~~Ml~~Gl~eEv~~L~~~~~~~~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~~~ 250 (339)
T 3a8t_A 171 LRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVE 250 (339)
T ss_dssp BSSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHCCTTCSCTTSCGGGSCGGGGSTTHHHHHHHHHHSCTTCCC
T ss_pred cccCeEEEEEeCCHHHHHHHHHhhccHhhhccHHHHHHHHHHhcCccccccchhccHHHHHhhHHHHHHHHcCccccccc
Confidence 4567899999999999999999999999999999999999986421 237899999999999999993
Q ss_pred --CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceEEeeCchhhh---h--chhhHHHHHHHhhhchH
Q 020362 214 --SLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEVFL---K--RGEEADEAWEKLVMLPS 286 (327)
Q Consensus 214 --~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD~t~~~~---~--~~~~~~~~w~~~V~~pa 286 (327)
...++..++..+++|++.+|.+||||||||+||||++.+ .+|+++|||+|+++. . .+....+.|++.|.+||
T Consensus 251 ~~~~~~~~~~~~~l~eaie~ik~~TR~yAKRQ~tWfr~~~~-~~w~i~~lDat~~~~~~~~~~~~~~~~~~W~~~V~~pa 329 (339)
T 3a8t_A 251 GEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKG-AGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPS 329 (339)
T ss_dssp CSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCCCEEEEECHHHHHHHHSTTTTHHHHHHHHHHTHHHH
T ss_pred ccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeeccccchhhhhhccccchhhHHHHHHHHHHH
Confidence 334567778889999999999999999999999999876 379999999999972 2 34566789999999999
Q ss_pred HHHHHHHhcC
Q 020362 287 TMTVRQFLYD 296 (327)
Q Consensus 287 ~~iv~~fl~~ 296 (327)
++||++||++
T Consensus 330 ~~iv~~fl~~ 339 (339)
T 3a8t_A 330 VKIVSRFLDE 339 (339)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 9999999964
No 2
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=100.00 E-value=6.2e-67 Score=513.65 Aligned_cols=255 Identities=30% Similarity=0.539 Sum_probs=223.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
+++|+|+||||||||+||..||+.++++|||+|+||+|++|+|+|+||+.+|+.|+||||+|++++.+.|++++|.++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEcCchHHHHHHHcCCc---------------------------------hh--------------
Q 020362 112 LAIESILSRDRLPIIAGGSSSYIKALVNGDA---------------------------------AE-------------- 144 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~---------------------------------~~-------------- 144 (327)
.+|+++.++|++|||||||++|+++|++|+. +.
T Consensus 82 ~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~~~~~~~g~~~L~~~L~~~DP~~A~rihpnd~~Ri~ 161 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQ 161 (409)
T ss_dssp HHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHHHHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHHHH
T ss_pred HHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHHHHHhccCHHHHHHHHHHhCHHHHHhcCcccHHHHH
Confidence 9999999999999999999999999997631 00
Q ss_pred ---------------h------hcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcCC--C-----CCcch
Q 020362 145 ---------------F------QLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQ--A-----DYSRG 196 (327)
Q Consensus 145 ---------------~------~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~--~-----~~~~g 196 (327)
+ ..+|++++|||++++++|++||++|++.|+++||++||+.|++.+ . +++.+
T Consensus 162 RALEV~~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~~~~~ 241 (409)
T 3eph_A 162 RMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENG 241 (409)
T ss_dssp HHHHHHHHHCSCHHHHHHTCCCCCSSEEEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCCGGGTTSG
T ss_pred HHHHHHHHHCCCHHHHHhhccCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccccccccccccc
Confidence 0 024678999999999999999999999999999999999999742 1 13468
Q ss_pred hhhhccHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCcceEEeeCchhhhhchhhHH
Q 020362 197 IRRAIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLN-DVWNWNIHRIDATEVFLKRGEEAD 275 (327)
Q Consensus 197 ~~qaIGykE~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~-~~~~~~i~~lD~t~~~~~~~~~~~ 275 (327)
++|+||||||.+||+|+.+.. +..+++|++.++.+||||||||+||||++. ...++++||||+|++
T Consensus 242 ~~~aIGYkE~~~yL~g~~~~~----e~~l~eaie~ik~~TRqyAKRQ~TWfR~~~~~~~~~~i~~lD~t~~--------- 308 (409)
T 3eph_A 242 VWQVIGFKEFLPWLTGKTDDN----TVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDL--------- 308 (409)
T ss_dssp GGGSTTTGGGGGGGC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCT---------
T ss_pred chhcccHHHHHHHHcCCCccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEcCCCh---------
Confidence 999999999999999942100 011799999999999999999999999872 111356999999998
Q ss_pred HHHHHhhhchHHHHHHHHhcCCCc
Q 020362 276 EAWEKLVMLPSTMTVRQFLYDEDR 299 (327)
Q Consensus 276 ~~w~~~V~~pa~~iv~~fl~~~~~ 299 (327)
+.|++.|.+||++|+++||.|+..
T Consensus 309 ~~W~~~V~~pa~~iv~~fl~~~~~ 332 (409)
T 3eph_A 309 SQWDTNASQRAIAISNDFISNRPI 332 (409)
T ss_dssp TTCTTTTHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCC
Confidence 689999999999999999999743
No 3
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=2.4e-63 Score=474.25 Aligned_cols=220 Identities=35% Similarity=0.585 Sum_probs=204.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
++++|+|+||||||||+||..||++++++|||+||||+|++|||+|+||+.+|+.|+||||+|+.+|.+.|++++|.++|
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCc-------hh---------------------------------------
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKALVNGDA-------AE--------------------------------------- 144 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~-------~~--------------------------------------- 144 (327)
...|+++.++|++|||||||++|+++|++|.. ++
T Consensus 82 ~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~i~pnd~~R 161 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRR 161 (322)
T ss_dssp HHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHHH
T ss_pred HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCcccHHH
Confidence 99999999999999999999999999998851 00
Q ss_pred -----------------h-------hcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcCCCCCcchhhhh
Q 020362 145 -----------------F-------QLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRRA 200 (327)
Q Consensus 145 -----------------~-------~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~~~~~~g~~qa 200 (327)
+ ...|++++|||++++++|++||++|++.|+++||++||+.|++.+ +.+.+++|+
T Consensus 162 i~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~-~~~~~a~~a 240 (322)
T 3exa_A 162 VIRALEIIKLTGKTVTEQARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYDRG-IRDCQSVQA 240 (322)
T ss_dssp HHHHHHHHHHTC--------------CCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT-CCSSTGGGS
T ss_pred HHHHHHHHHHHCCCHHHHhhhccCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcC-CCcCcccee
Confidence 0 013678899999999999999999999999999999999999876 556789999
Q ss_pred ccHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceEEeeCch
Q 020362 201 IGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATE 265 (327)
Q Consensus 201 IGykE~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD~t~ 265 (327)
|||||+.+||+|+.+ +++|++.++.+||||||||+||||++.+ ++|+|.++
T Consensus 241 IGYkE~~~yL~G~~s---------l~eaie~i~~~TR~yAKRQ~TWfR~~~~-----~~w~~~~~ 291 (322)
T 3exa_A 241 IGYKEMYDYLDGNVT---------LEEAIDTLKRNSRRYAKRQLTWFRNKAN-----VTWFDMTD 291 (322)
T ss_dssp TTTHHHHHHHHTSSC---------HHHHHHHHHHHHHHHHHHHHHHHHTSTT-----EEEEECTT
T ss_pred eeHHHHHHHHCCCCC---------HHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CeEeCCCC
Confidence 999999999999988 7999999999999999999999999764 89999764
No 4
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=4e-63 Score=471.93 Aligned_cols=223 Identities=30% Similarity=0.499 Sum_probs=204.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
+++++|+|+||||||||+||..||++++++|||+||+|+|++|||+|+||+.+|+.|+||||+|+++|++.|++++|.++
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~ 87 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD 87 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCc------hh---------------------------------------
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDA------AE--------------------------------------- 144 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~------~~--------------------------------------- 144 (327)
|.+.|+++.++|++|||||||++|+++|++|++ ++
T Consensus 88 a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~ri~pnd~~R 167 (316)
T 3foz_A 88 ALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQR 167 (316)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHhhCCCccHHH
Confidence 999999999999999999999999999998851 00
Q ss_pred -----------------h------hcccceEEEEEeC-CHHHHHHHhhhhhhhhhhccHHHHHHhhhcCC-CCCcchhhh
Q 020362 145 -----------------F------QLRYECFFLWVDV-SLPVLHSFVSERVDRMVELGLVEEVKQMFDPQ-ADYSRGIRR 199 (327)
Q Consensus 145 -----------------~------~~~~~~~~i~L~~-~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~-~~~~~g~~q 199 (327)
+ ...|++++|+|++ |+++|++||++|++.|+++||++||+.|++.+ .+.+.+++|
T Consensus 168 i~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~~~~~~~~~~~ 247 (316)
T 3foz_A 168 LSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIR 247 (316)
T ss_dssp HHHHHHHHHHHSSCHHHHHTSCCCCCSSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCCCTTSTTTT
T ss_pred HHHHHHHHHHHCCCHHHHhhccCCCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCCCccCccce
Confidence 0 0136788999999 99999999999999999999999999999863 344567999
Q ss_pred hccHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceEEeeCchh
Q 020362 200 AIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATEV 266 (327)
Q Consensus 200 aIGykE~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD~t~~ 266 (327)
+|||||+.+||+|+.+ ++++++.++++||||||||+||||++.. ++|+|.++.
T Consensus 248 aIGYkE~~~yL~G~~s---------~~eai~~~~~~TR~yAKRQ~TWfR~~~~-----~~w~~~~~~ 300 (316)
T 3foz_A 248 CVGYRQMWSYLEGEIS---------YDEMVYRGVCATRQLAKRQITWLRGWEG-----VHWLDSEKP 300 (316)
T ss_dssp STTHHHHHHHHHTSSC---------HHHHHHHHHHHHHHHHHHHHHHHHSCSS-----CEEEETTCH
T ss_pred eeehhhHHHHhcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CeEeCCcCh
Confidence 9999999999999988 7999999999999999999999999764 899997653
No 5
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=100.00 E-value=3.9e-57 Score=433.56 Aligned_cols=222 Identities=29% Similarity=0.477 Sum_probs=201.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
+++++|+|+|||||||||||..||+++++++||+|++|+|+|++|+|+||+.+|+.|+|||++|+.++.+.|++.+|++.
T Consensus 3 ~m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~ 82 (323)
T 3crm_A 3 SLPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRAD 82 (323)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCc---------------------------------h-------------
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDA---------------------------------A------------- 143 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~---------------------------------~------------- 143 (327)
+.+.++++.++|+.||+||||++|+++|++|.. +
T Consensus 83 a~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~R 162 (323)
T 3crm_A 83 ALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQR 162 (323)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC------------------------------------------------
T ss_pred HHHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHH
Confidence 999999999999999999999999999998751 0
Q ss_pred ----------------hhh-----------------cccceEEEEEeCC-HHHHHHHhhhhhhhhhhccHHHHHHhhhcC
Q 020362 144 ----------------EFQ-----------------LRYECFFLWVDVS-LPVLHSFVSERVDRMVELGLVEEVKQMFDP 189 (327)
Q Consensus 144 ----------------~~~-----------------~~~~~~~i~L~~~-~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~ 189 (327)
++. ..|++++|+|+++ +++|++||++|++.|+++||++||+.|++.
T Consensus 163 i~RALEv~~~tG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~ 242 (323)
T 3crm_A 163 LMRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHAR 242 (323)
T ss_dssp -------------------------------------CSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCHHHHHhhccccccccccccccCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 000 1256788999997 999999999999999999999999999975
Q ss_pred C-CCCcchhhhhccHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceEEeeCch
Q 020362 190 Q-ADYSRGIRRAIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDATE 265 (327)
Q Consensus 190 ~-~~~~~g~~qaIGykE~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD~t~ 265 (327)
+ .....+++|+|||||+.+||+|+.+ +++|++.++.+||||||||+||||++.. ++|+|.++
T Consensus 243 ~~~~~~~~~~~aIGyke~~~yl~g~~~---------~~eai~~~~~~Tr~yAKRQ~TWfr~~~~-----~~w~~~~~ 305 (323)
T 3crm_A 243 SDLHAGLPSIRAVGYRQVWDYLDGKLS---------YAEMTERGIIATRQLAKRQFTWLRSWSH-----LHWMDSLA 305 (323)
T ss_dssp TTCCTTSSGGGSTTHHHHHHHHTTSSC---------HHHHHHHHHHHHHHHHHHHHHHHHTCSS-----CEEEETTC
T ss_pred CCCCCCCcchheecHHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CeEecCCC
Confidence 3 2334569999999999999999988 7999999999999999999999999754 89999654
No 6
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=7.2e-54 Score=413.39 Aligned_cols=218 Identities=33% Similarity=0.579 Sum_probs=199.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
+++|+|+|||||||||||..||+.+++++||+|++|+|++++|+|+||+.+|+.+++||++|+.++.+.+++.+|.+.+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~ 86 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAE 86 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEcCchHHHHHHHcCC----c---hh----h-----------------------------------
Q 020362 112 LAIESILSRDRLPIIAGGSSSYIKALVNGD----A---AE----F----------------------------------- 145 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~Y~~all~~~----~---~~----~----------------------------------- 145 (327)
..+.++.++|+.||||||+++|+++++++. + ++ +
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r~~~~G~~~l~~~L~~vdP~~a~~I~p~d~ 166 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNR 166 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHCHHHHHHSCTTCH
T ss_pred HHHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHhhCcHHHhhcCccCc
Confidence 999999999999999999999999887654 1 11 0
Q ss_pred ---------------------h-----cccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHHHhhhcCCCCCcchhhh
Q 020362 146 ---------------------Q-----LRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEVKQMFDPQADYSRGIRR 199 (327)
Q Consensus 146 ---------------------~-----~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev~~l~~~~~~~~~g~~q 199 (327)
. ..|++++|||++++++|++||++|++.|+++||++||+.|++.+.. ..+++|
T Consensus 167 ~Ri~RALEv~~~tG~~~s~~~~~~~~~~~~~~~~~~L~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~~~~-~~~~~~ 245 (340)
T 3d3q_A 167 KRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFE-ASQSMQ 245 (340)
T ss_dssp HHHHHHHHHHHHHCSCSHHHHHHHHHSBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCT-TSSGGG
T ss_pred hhhhhHHHHHHHhCCChHHHhhhccCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCC-cchhhh
Confidence 0 0367899999999999999999999999999999999999986433 567999
Q ss_pred hccHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceEEeeCc
Q 020362 200 AIGVPELDQYIRAGSLLDHKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLNDVWNWNIHRIDAT 264 (327)
Q Consensus 200 aIGykE~~~yl~~~~~~d~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~~~~~~~i~~lD~t 264 (327)
+|||||+.+||+|+.+ +++|++.++.+||||||||+||||++.+ ++|+|..
T Consensus 246 aIGyke~~~yl~g~~~---------~~ea~~~~~~~Tr~yAKRQ~TWfr~~~~-----~~w~~~~ 296 (340)
T 3d3q_A 246 AIGYKELVPVIKGNIS---------MENAVEKLKQHSRQYAKRQLTWFKNKMN-----VHWLNKE 296 (340)
T ss_dssp STTTTTHHHHHHTSSC---------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-----CEEEETT
T ss_pred hccHHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CeeecCc
Confidence 9999999999999988 8999999999999999999999999764 7899853
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=100.00 E-value=1.1e-36 Score=281.35 Aligned_cols=215 Identities=14% Similarity=0.175 Sum_probs=182.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCc-ccCHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA-NFTATDFRNHAS 111 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~-~~s~~~f~~~a~ 111 (327)
++|+|+|||||||||||..||+++++++|++|++++|+|++++|++|+.+|+.+++||+++..++.+ .++...|.+.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999988876 799999999999
Q ss_pred HHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCH-HHHHHHhhhhhhhhhhc-----cHHHHHHh
Q 020362 112 LAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSL-PVLHSFVSERVDRMVEL-----GLVEEVKQ 185 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~-e~L~~RL~~Rv~~Ml~~-----Gl~~Ev~~ 185 (327)
..+ ++.++|+.+|++||++.|++.++... .+...++++++||++|. +++.+|+.+|.+.|+.. ++++|+..
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~--~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~~~~l~e~~~ 158 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISLLNCMAKSP--FWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEELAE 158 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHHHHHHHHCT--TTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHH
T ss_pred HHH-HHHhCCCCeEEeccHHHHHHHHHhcc--cccccCceEEEEecchhHHHHHHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 998 88888999999999999998887641 11234567899999996 99999999999999776 99999999
Q ss_pred hhcCCCCCcchhhhhccHHHHHHHHHcCC-Ccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020362 186 MFDPQADYSRGIRRAIGVPELDQYIRAGS-LLD--HKIRAKLLEAAINKIKENTCNLSCRQLQKIHRLN 251 (327)
Q Consensus 186 l~~~~~~~~~g~~qaIGykE~~~yl~~~~-~~d--~~~~~~ll~~aie~ik~~Tr~yAkRQ~tW~r~~~ 251 (327)
+++.. ....++...+||+|+++|+.... +.+ ....+.+++++++.|+.+|++|||||.+||..+.
T Consensus 159 ~~~~p-~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~a~~q~~~~~~w~ 226 (253)
T 2ze6_A 159 LWNYP-AARPILEDIDGYRCAIRFARKHDLAISQLPNIDAGRHVELIEAIANEYLEHALSQERDFPQWP 226 (253)
T ss_dssp HHTST-THHHHHTTSTTHHHHHHHHHHHTCCGGGGGGCCTTHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred hcCCc-chHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99852 22245677899999999997421 111 1122346889999999999999999998886543
No 8
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=99.45 E-value=9e-15 Score=131.10 Aligned_cols=73 Identities=30% Similarity=0.437 Sum_probs=65.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcc---cccCCCChhhhcCcccee----ccccCCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLD---IVTNKVTEEECHGVPHHL----LGIIEPNANF 101 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gld---I~Takp~~~E~~gvphhl----id~~~~~~~~ 101 (327)
....+.|+|+||||||||+||.+|+++++ ++||.|++|+|++++ |+|+||+ ++||+ +|++++.+.|
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~~f 103 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMNLF 103 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHHHH
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCCceEEEECCcc------ccccccccceeEEcccccC
Confidence 34568899999999999999999999977 999999999999999 9999986 89999 9999998888
Q ss_pred CHHHHHH
Q 020362 102 TATDFRN 108 (327)
Q Consensus 102 s~~~f~~ 108 (327)
+++.|++
T Consensus 104 ~~~~f~~ 110 (205)
T 2qmh_A 104 GAGAVRE 110 (205)
T ss_dssp CTTSBCS
T ss_pred CHHHHHh
Confidence 8888754
No 9
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.35 E-value=1.1e-12 Score=113.09 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=83.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
+++.|+|+|++||||||+|..||+++|..+|++|.+..- ..|.+. .+ ..+.+....|....
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~--------------~~g~~~--~~---~~~~~g~~~~~~~~ 64 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK--------------RTGADI--AW---IFEMEGEAGFRRRE 64 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH--------------HHTSCH--HH---HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH--------------HcCCCh--hh---HHHHhCHHHHHHHH
Confidence 467899999999999999999999999999999987421 111110 01 11123446677777
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHh--hhhhhhhhhcc--HHHHHHhh
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFV--SERVDRMVELG--LVEEVKQM 186 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL--~~Rv~~Ml~~G--l~~Ev~~l 186 (327)
...+..+.......|.+||...+-..... .+. -...+|||++|.+++.+|+ ..|....+..+ ..+.++.+
T Consensus 65 ~~~~~~~~~~~~~vi~~gg~~~~~~~~~~----~l~--~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~ 138 (185)
T 3trf_A 65 REMIEALCKLDNIILATGGGVVLDEKNRQ----QIS--ETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQL 138 (185)
T ss_dssp HHHHHHHHHSSSCEEECCTTGGGSHHHHH----HHH--HHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEecCCceecCHHHHH----HHH--hCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH
Confidence 78888887766666666664432111110 011 1247899999999999999 55433333222 23445554
Q ss_pred hc
Q 020362 187 FD 188 (327)
Q Consensus 187 ~~ 188 (327)
+.
T Consensus 139 ~~ 140 (185)
T 3trf_A 139 NE 140 (185)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=2.6e-13 Score=120.68 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=75.4
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHH-
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDF- 106 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f- 106 (327)
|++++.+|+|+||+|||||||+..|++.++.. ++...+.+|++|...|..|++||+++.-.+........|
T Consensus 4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~l 75 (208)
T 3tau_A 4 MTERGLLIVLSGPSGVGKGTVREAVFKDPETS--------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKML 75 (208)
T ss_dssp -CCCCCEEEEECCTTSCHHHHHHHHHHSTTCC--------CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred ccCCCcEEEEECcCCCCHHHHHHHHHhhCCCc--------EEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEE
Confidence 45677899999999999999999999987632 334567889999999999999987653221110000000
Q ss_pred ---------HHHHHHHHHHHHhCCCCeEEE---cCchHHHHHHHcCCchhhhcccceEEEEEe-CCHHHHHHHhhhhh
Q 020362 107 ---------RNHASLAIESILSRDRLPIIA---GGSSSYIKALVNGDAAEFQLRYECFFLWVD-VSLPVLHSFVSERV 171 (327)
Q Consensus 107 ---------~~~a~~~i~~i~~~gk~pIvv---GGT~~Y~~all~~~~~~~~~~~~~~~i~L~-~~~e~L~~RL~~Rv 171 (327)
+......++++.++|+.+|+. .|...+.+. ..+..++++. ++.++|.+||.+|-
T Consensus 76 e~~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~-----------~~~~~~i~i~~ps~~~l~~Rl~~R~ 142 (208)
T 3tau_A 76 EYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKA-----------MPEGIFIFLTPPDLSELKNRIIGRG 142 (208)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHH-----------CTTSEEEEEECTTTTTSSCC-----
T ss_pred EEEEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHh-----------CCCeEEEEEeCCCHHHHHHHHHhcC
Confidence 000124467778889987773 332222111 1122344444 55899999999885
No 11
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=1.1e-11 Score=109.06 Aligned_cols=120 Identities=16% Similarity=0.221 Sum_probs=75.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc-CcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
..+.++|+|+|++||||||++..||+.+|..+++.|.+..-. |.++. + ....+....|+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~-------~-------------~~~~~~~~~~~ 81 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVG-------E-------------LFTERGEAGFR 81 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHH-------H-------------HHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHH-------H-------------HHHhcChHHHH
Confidence 445679999999999999999999999999999999864211 21110 0 01123345577
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCch-HHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhh-hhhhhhh
Q 020362 108 NHASLAIESILSRDRLPIIAGGSS-SYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVS-ERVDRMV 175 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~-~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~-~Rv~~Ml 175 (327)
......++.+...+...|.+||.. .+.+. .. .+ .....+|||++|.+++.+|+. .|..+.+
T Consensus 82 ~~e~~~l~~l~~~~~~vi~~ggg~~~~~~~-~~----~l--~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~ 144 (199)
T 3vaa_A 82 ELERNMLHEVAEFENVVISTGGGAPCFYDN-ME----FM--NRTGKTVFLNVHPDVLFRRLRIAKQQRPI 144 (199)
T ss_dssp HHHHHHHHHHTTCSSEEEECCTTGGGSTTH-HH----HH--HHHSEEEEEECCHHHHHHHHHHTGGGCGG
T ss_pred HHHHHHHHHHhhcCCcEEECCCcEEccHHH-HH----HH--HcCCEEEEEECCHHHHHHHHhcCCCCCCC
Confidence 777777777765544434445422 21110 00 01 113578999999999999998 5544433
No 12
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.15 E-value=2.4e-10 Score=100.13 Aligned_cols=129 Identities=20% Similarity=0.271 Sum_probs=74.3
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
|..++++|+|+|++||||||++..|++.+|..+|++|.+.--... .....|... .......+.
T Consensus 14 m~~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~--------~~~~~g~~~---------~~~~~~~~~ 76 (202)
T 3t61_A 14 VRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENI--------RKMSEGIPL---------TDDDRWPWL 76 (202)
T ss_dssp -CCCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHH--------HHHHHTCCC---------CHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhH--------HHHhcCCCC---------CchhhHHHH
Confidence 445577999999999999999999999999999999976310000 000111110 011111222
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCc--hHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHHH
Q 020362 108 NHASLAIESILSRDRLPIIAGGS--SSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEEV 183 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT--~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~Ev 183 (327)
+.+.+....|...|+.++. ..+.+.+... ...+..+|+|++|.+++.+|+.+|.........+++.
T Consensus 77 ----~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~------~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~ 144 (202)
T 3t61_A 77 ----AAIGERLASREPVVVSCSALKRSYRDKLRES------APGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQ 144 (202)
T ss_dssp ----HHHHHHHTSSSCCEEECCCCSHHHHHHHHHT------STTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred ----HHHHHHHhcCCCEEEECCCCCHHHHHHHHHh------cCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHH
Confidence 2344444556654544331 1233322211 1123578999999999999999997543333333333
No 13
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.14 E-value=4.1e-10 Score=99.53 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=79.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH--
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA-- 110 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a-- 110 (327)
+.|+|+||+|||||||...|.+.++.. +......+|++|...|..|+.||+++ ..+|.++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~--------~~~svs~TTR~pR~gE~~G~dY~Fvs---------~~eF~~~i~~ 64 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVS---------VDEFKSMIKN 64 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT--------EEECCCEECSCCCTTCCBTTTBEECC---------HHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC--------eEEEEEEeccCCCCCCcCCceeEeec---------HHHHHHHHHc
Confidence 458999999999999999999887532 22346789999999999999999864 34444443
Q ss_pred -----------------HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceE-EEEEeCCHHHHHHHhhhhh
Q 020362 111 -----------------SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECF-FLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 111 -----------------~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~-~i~L~~~~e~L~~RL~~Rv 171 (327)
...+++.+++|+.+|+. +.....+.+..- ...+.. ++.+.++.++|.+||..|-
T Consensus 65 g~flE~~~~~g~~YGt~~~~v~~~l~~g~~vil~-id~~g~~~~k~~------~~~~~~~Ifi~pps~e~L~~RL~~Rg 136 (186)
T 1ex7_A 65 NEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILD-IDMQGVKSVKAI------PELNARFLFIAPPSVEDLKKRLEGRG 136 (186)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHHTSEEEEE-CCHHHHHHHHTC------GGGCCEEEEEECSCHHHHHHHHHHHC
T ss_pred CCEEEEEEEcCceeeeecceeeehhhCCCEEEec-CCHHHHHHHHHh------cccCceEEEEeCCCHHHHHHHHHhcC
Confidence 35567777778876554 334333333221 112333 4445677899999999995
No 14
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.13 E-value=3.2e-10 Score=96.41 Aligned_cols=120 Identities=17% Similarity=0.047 Sum_probs=74.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHH-hCCCeEEeCCccchhc-CcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLAT-RFPAEIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~-~~~~eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
+.+|+|+|++||||||+|..|++ .++..+|++|.+.... +. +. + ....++. -....+.+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~------~~-----~----~~~~~~~---~~~~~~~~~ 63 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAH------EE-----R----DEYKYTK---KKEGIVTGM 63 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTS------CC-----G----GGCCCCH---HHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCC------Cc-----c----chhhhch---hhhhHHHHH
Confidence 57999999999999999999999 6899999998754211 10 00 0 0000110 011234444
Q ss_pred HHHHHHHHH---hCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 110 ASLAIESIL---SRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 110 a~~~i~~i~---~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
....+.... ..|+ .||+.|+.. |.+.+..- .....++..+|||++|.+++.+|+..|..+
T Consensus 64 ~~~~~~~~l~~~~~g~-~vi~d~~~~~~~~~~~l~~~---~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~ 129 (181)
T 1ly1_A 64 QFDTAKSILYGGDSVK-GVIISDTNLNPERRLAWETF---AKEYGWKVEHKVFDVPWTELVKRNSKRGTK 129 (181)
T ss_dssp HHHHHHHHHTSCSSCC-EEEECSCCCSHHHHHHHHHH---HHHHTCEEEEEECCCCHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHhhccCCC-eEEEeCCCCCHHHHHHHHHH---HHHcCCCEEEEEEeCCHHHHHHHHhccccC
Confidence 455566666 5554 577777653 33333210 001224567899999999999999999753
No 15
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.10 E-value=8.3e-10 Score=97.24 Aligned_cols=126 Identities=16% Similarity=0.256 Sum_probs=77.6
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCC---------
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPN--------- 98 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~--------- 98 (327)
.+.++++|+|+||+|||||||+..|++.++.. ++..+...|.+|...|..|..+++++.-...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~--------~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~ 79 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSR--------FRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFL 79 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTT--------EEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccc--------eeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCE
Confidence 45678899999999999999999999998531 1223456788888777778777665321100
Q ss_pred --cccCHHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhccc---ceEEEEEe-CCHHHHHHHhhhhh
Q 020362 99 --ANFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRY---ECFFLWVD-VSLPVLHSFVSERV 171 (327)
Q Consensus 99 --~~~s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~---~~~~i~L~-~~~e~L~~RL~~Rv 171 (327)
.++.- .+.......++++.+.|+..|+. ++..-.+.+. ..+ +..+|||+ ++.++|.+|+.+|.
T Consensus 80 ~~~~~~~-~~~~~~~~~i~~~l~~g~~vi~d-~~~~~~~~l~--------~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~ 148 (204)
T 2qor_A 80 EFDKYAN-NFYGTLKSEYDLAVGEGKICLFE-MNINGVKQLK--------ESKHIQDGIYIFVKPPSIDILLGRLKNRN 148 (204)
T ss_dssp EEEEETT-EEEEEEHHHHHHHHHTTCEEEEE-CCHHHHHHHH--------HCSSCSCCEEEEEECSCHHHHHHHHHTCT
T ss_pred EeHHhCC-CeecCCHHHHHHHHHcCCeEEEE-ECHHHHHHHH--------HhcCCCCeEEEEEcCCCHHHHHHHHHHcC
Confidence 00000 00000113456666777765544 3322222222 122 35789998 99999999998885
No 16
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.05 E-value=1.1e-09 Score=93.37 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=69.3
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEE--eCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH-
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEII--NSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN- 108 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiI--s~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~- 108 (327)
+++|+|+|++||||||++..|+++++..++ +.|.+.... .- ++ ..+..|+. +.+....+....|+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~--~~---~~-~~~~~~~~-----~~~~~~~~~~~~~~~~ 71 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM--PL---KM-QSAEGGIE-----FDADGGVSIGPEFRAL 71 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHS--CG---GG-GTSTTSEE-----ECTTSCEEECHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhc--ch---hh-ccchhhcc-----ccCCCccccchhHHHH
Confidence 579999999999999999999999987655 477553211 00 00 00111211 111111111233332
Q ss_pred --HHHHHHHHHHhCCCCeEEEcCchH---H-HHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 109 --HASLAIESILSRDRLPIIAGGSSS---Y-IKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 109 --~a~~~i~~i~~~gk~pIvvGGT~~---Y-~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
.....+..+.+.|.. ||+.++.+ . .+.+.+ .+ ......++||+++.+++.+|+.+|.+.
T Consensus 72 ~~~~~~~~~~~~~~g~~-vi~~~~~~~~~~~~~~~~~----~~-~~~~~~~v~l~~~~e~l~~R~~~r~~~ 136 (178)
T 1qhx_A 72 EGAWAEGVVAMARAGAR-IIIDDVFLGGAAAQERWRS----FV-GDLDVLWVGVRCDGAVAEGRETARGDR 136 (178)
T ss_dssp HHHHHHHHHHHHHTTCE-EEEEECCTTTHHHHHHHHH----HH-TTCCEEEEEEECCHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhcCCe-EEEEeccccChHHHHHHHH----Hh-cCCcEEEEEEECCHHHHHHHHHhhCCc
Confidence 223345566666654 55544431 1 111111 01 123467889999999999999988654
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.04 E-value=5.2e-10 Score=96.63 Aligned_cols=126 Identities=10% Similarity=0.179 Sum_probs=72.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
+.++++|+|+|++||||||++..|++.+|..+|++|.+.... ..-++ + .. ..+...+. + .+.........
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~-~~~~~--~-~~--~~i~~~~~---~-g~~~~~~~~~~ 75 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSE-VSSGS--A-RG--KKLSEIME---K-GQLVPLETVLD 75 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-HHTTC--H-HH--HHHHHHHH---T-TCCCCHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHH-HHcCC--h-HH--HHHHHHHH---c-CCcCCHHHHHH
Confidence 356789999999999999999999999999999998743211 00000 0 00 00111010 0 11112222333
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 109 HASLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.....+....+.|+. +|+.|... +++.+... ......+|||++|.+++.+|+..|-
T Consensus 76 ~~~~~i~~~~~~~~~-vi~d~~~~~~~~~~~~~~~------~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 76 MLRDAMVAKVNTSKG-FLIDGYPREVQQGEEFERR------IGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHHHHHHHHTTTCSC-EEEESCCCSHHHHHHHHHH------TCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCc-EEEeCCCCCHHHHHHHHHh------cCCCCEEEEEECCHHHHHHHHHccC
Confidence 344455555555665 55555322 12111110 1223478999999999999998884
No 18
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.00 E-value=2.3e-09 Score=98.42 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=79.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh---CCCeEE--eCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR---FPAEII--NSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATD 105 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~---~~~eiI--s~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~ 105 (327)
++++|+|+|++||||||+|..|++. .|..++ +.|.+.. .+ .+ +++ .....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~--~l------------~~--------~~~---~~e~~ 57 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE--SF------------PV--------WKE---KYEEF 57 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT--TS------------SS--------CCG---GGHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH--HH------------hh--------hhH---HHHHH
Confidence 4579999999999999999999998 788777 7775431 11 00 111 12233
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEcCchHHH---HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhhhhccHHHH
Q 020362 106 FRNHASLAIESILSRDRLPIIAGGSSSYI---KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRMVELGLVEE 182 (327)
Q Consensus 106 f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~---~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~Ml~~Gl~~E 182 (327)
|.......+....+. ..||+.|+.+|- +.+..- ......+.++|||++|.+++.+|+.+|-. ......+++
T Consensus 58 ~~~~~~~~i~~~l~~--~~vIiD~~~~~~~~~~~l~~~---a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-~~~~~~l~~ 131 (260)
T 3a4m_A 58 IKKSTYRLIDSALKN--YWVIVDDTNYYNSMRRDLINI---AKKYNKNYAIIYLKASLDVLIRRNIERGE-KIPNEVIKK 131 (260)
T ss_dssp HHHHHHHHHHHHHTT--SEEEECSCCCSHHHHHHHHHH---HHHTTCEEEEEEEECCHHHHHHHHHHTTC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CEEEEeCCcccHHHHHHHHHH---HHHcCCCEEEEEEeCCHHHHHHHHHhCCC-CCCHHHHHH
Confidence 444445556666554 567777766432 222110 01123457899999999999999999853 233345555
Q ss_pred HHhhhc
Q 020362 183 VKQMFD 188 (327)
Q Consensus 183 v~~l~~ 188 (327)
+...|+
T Consensus 132 ~~~~~e 137 (260)
T 3a4m_A 132 MYEKFD 137 (260)
T ss_dssp HHHHCC
T ss_pred HHHHhc
Confidence 555454
No 19
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.99 E-value=2.1e-09 Score=93.93 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=71.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCc-c-cccCCCChhhhcCccceec-cccCCCcccCHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGL-D-IVTNKVTEEECHGVPHHLL-GIIEPNANFTATD 105 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gl-d-I~Takp~~~E~~gvphhli-d~~~~~~~~s~~~ 105 (327)
..++++|+|+|++||||||++..|++.+|..+|++|.+- +.. . -++ + ..+. +...+. +.+.+ ...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~--~~~~~~~~~--~-~~~~--i~~~~~~g~~~~-----~~~ 79 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLL--RAEQGRAGS--Q-YGEL--IKNCIKEGQIVP-----QEI 79 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHH--HHHHHSTTC--S-CHHH--HHHHHHTTCCCC-----HHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHH--HHHHhccCC--H-HHHH--HHHHHHcCCcCC-----HHH
Confidence 345679999999999999999999999999999999642 211 0 010 0 0000 011010 11111 111
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEcCchHHHH-H-HHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 106 FRNHASLAIESILSRDRLPIIAGGSSSYIK-A-LVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 106 f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~-a-ll~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
......+.+....+.|+..+|+.|...-++ + +++ ..... ...+|||++|.+++.+|+.+|-
T Consensus 80 ~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~----~~~~~-~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 80 TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFE----RDIVE-SKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHH----HHTCC-CSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHH----HhcCC-CCEEEEEECCHHHHHHHHHhcc
Confidence 222333445555566755566666431111 1 111 01111 3468999999999999998884
No 20
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.99 E-value=5.9e-09 Score=88.88 Aligned_cols=118 Identities=18% Similarity=0.289 Sum_probs=67.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhh-hcCccceeccccCCCcccCHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEE-CHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E-~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
+..+|+|+|++||||||++..|+..+|..+++.|.+.... .+ .. ..|... .+ .....+.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~--~~-------~~~~~g~~~--------~~-~~~~~~~~~ 68 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR--NI-------EKMASGEPL--------ND-DDRKPWLQA 68 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH--HH-------HHHHTTCCC--------CH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH--HH-------HHhhcCcCC--------Cc-cccccHHHH
Confidence 3579999999999999999999999999999999764110 00 00 011110 00 001112222
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcc-cceEEEEEeCCHHHHHHHhhhhhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLR-YECFFLWVDVSLPVLHSFVSERVD 172 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~-~~~~~i~L~~~~e~L~~RL~~Rv~ 172 (327)
....+..+...+...|+..| +.+-. ..+ .++.. .++.+|||++|.+++.+|+.+|-.
T Consensus 69 ~~~~~~~~~~~~~~~vi~~~-~~~~~-~~~----~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~ 126 (175)
T 1knq_A 69 LNDAAFAMQRTNKVSLIVCS-ALKKH-YRD----LLREGNPNLSFIYLKGDFDVIESRLKARKG 126 (175)
T ss_dssp HHHHHHHHHHHCSEEEEECC-CCSHH-HHH----HHHTTCTTEEEEEEECCHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhcCCcEEEEeC-chHHH-HHH----HHHhcCCCEEEEEEECCHHHHHHHHHhccC
Confidence 23344444444554444433 22111 100 11111 245799999999999999998864
No 21
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.99 E-value=1e-09 Score=94.52 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=70.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHH---HH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTAT---DF 106 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~---~f 106 (327)
+++.+|+|+|++||||||++..|++.++..+++.|.+... +. .++ +. + ...+... ..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~--~~-----------~~~-----~~-~-~~~~~~~~~~~~ 62 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEV--MF-----------DGL-----GW-S-DREWSRRVGATA 62 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHH--HH-----------HHH-----CC-C-SHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHH--HH-----------Hhc-----Cc-c-chHHHHHhhHHH
Confidence 4578999999999999999999999999999999876411 00 000 00 0 0001000 01
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhc--ccceEEEEEeCCHHHHHHHhhhhhh
Q 020362 107 RNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQL--RYECFFLWVDVSLPVLHSFVSERVD 172 (327)
Q Consensus 107 ~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~--~~~~~~i~L~~~~e~L~~RL~~Rv~ 172 (327)
.......+....+.|+. ||+.++..+...+ ... ..+.. ..+.++|||++|.+++.+|+.+|..
T Consensus 63 ~~~~~~~~~~~l~~g~~-vi~d~~~~~~~~~-~~~-~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 63 IMMLYHTAATILQSGQS-LIMESNFRVDLDT-ERM-QNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp HHHHHHHHHHHHHTTCC-EEEEECCCHHHHH-HHH-HHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCe-EEEecCCCCHHHH-HHH-HHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 11122334555566765 5555555322110 000 00111 2356789999999999999998863
No 22
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.97 E-value=3.3e-09 Score=90.71 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEE-eCCccc--hhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEII-NSDKMQ--VYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiI-s~Ds~q--vy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
++.+|+|+|++||||||+|..|++.++..++ +.|... +-.-+. .|.+ ++.+. ..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~-----------~g~~----~~~~~------~~~~ 62 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTP-----------GFSG----DPQEH------PMWI 62 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTST-----------TCCS----CGGGS------TTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCc-----------cccc----hhhhh------HHHH
Confidence 4579999999999999999999999999888 321110 100000 0100 00000 1122
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhh-cccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 108 NHASLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQ-LRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~-~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
+...+.+..+.+.++..||++++.. |...+.. .++ ....+..|+|++|.+++.+|+..|..+
T Consensus 63 ~~~~~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~----~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r 128 (183)
T 2vli_A 63 PLMLDALQYASREAAGPLIVPVSISDTARHRRLMS----GLKDRGLSVHHFTLIAPLNVVLERLRRDGQP 128 (183)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHH----HHHHTTCCCEEEEEECCHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhCCCcEEEeeeccCHHHHHHHHH----HHHhcCCceEEEEEeCCHHHHHHHHHhcccc
Confidence 2333444555554334466666642 2222211 111 123346699999999999999998643
No 23
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.96 E-value=6.4e-10 Score=95.71 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=69.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchh-cCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVY-KGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy-~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
+++|+|+|++||||||+|..|++.+|..+|++|.+..- .|.+ .. ++++ ......|....
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~-------~~----------~~~~---~~g~~~~~~~~ 61 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRS-------IA----------DIFA---TDGEQEFRRIE 61 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSC-------HH----------HHHH---HHCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCC-------HH----------HHHH---HhChHHHHHHH
Confidence 35799999999999999999999999999999986311 1211 00 0110 01223455555
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHH-HHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKA-LVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~a-ll~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
...++.+.......|..|| +..++. ..+ .++ ...+|||++|.+++.+|+.+|-
T Consensus 62 ~~~~~~~~~~~~~vi~~g~-~~v~~~~~~~----~l~---~~~vV~L~~~~e~~~~Rl~~r~ 115 (184)
T 2iyv_A 62 EDVVRAALADHDGVLSLGG-GAVTSPGVRA----ALA---GHTVVYLEISAAEGVRRTGGNT 115 (184)
T ss_dssp HHHHHHHHHHCCSEEECCT-TGGGSHHHHH----HHT---TSCEEEEECCHHHHHHHTTCCC
T ss_pred HHHHHHHHhcCCeEEecCC-cEEcCHHHHH----HHc---CCeEEEEeCCHHHHHHHHhCCC
Confidence 5566666555554344454 321110 000 111 2368999999999999998884
No 24
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.95 E-value=2.2e-09 Score=105.47 Aligned_cols=103 Identities=12% Similarity=0.128 Sum_probs=71.2
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
..+.+.+|+|+|++||||||+|..|++.+++.+|+.|.+.. |.
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~-------------------------------------~~ 296 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGS-------------------------------------WQ 296 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSCS-------------------------------------HH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHHH-------------------------------------HH
Confidence 34567899999999999999999999999999999887521 22
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhh
Q 020362 108 NHASLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVD 172 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~ 172 (327)
... ..+......|+. ||+++++. +++.+..- .....+.+.+|||+++.+++.+|+..|..
T Consensus 297 ~~~-~~~~~~l~~g~~-vIiD~~~~~~~~r~~~~~~---~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 297 RCV-SSCQAALRQGKR-VVIDNTNPDVPSRARYIQC---AKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp HHH-HHHHHHHHTTCC-EEEESCCCSHHHHHHHHHH---HHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhcCCc-EEEeCCCCCHHHHHHHHHH---HHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 222 223344455654 66666653 22222210 01123567899999999999999999975
No 25
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.95 E-value=4e-10 Score=96.56 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=67.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchh-cCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVY-KGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHAS 111 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy-~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~ 111 (327)
+.|+|+|++||||||+|..||++++..+++.|.+... .|.++ .+ +++ ......|++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~-------~~----------~~~---~~g~~~~~~~~~ 64 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKV-------SE----------IFE---QKRENFFREQEQ 64 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCH-------HH----------HHH---HHCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCH-------HH----------HHH---HcCHHHHHHHHH
Confidence 3699999999999999999999999999999986421 12111 00 000 112234555545
Q ss_pred HHHHHHHhCCCCeEEE-cCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhh
Q 020362 112 LAIESILSRDRLPIIA-GGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 112 ~~i~~i~~~gk~pIvv-GGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~R 170 (327)
..+..+..... .||. || +.. ++ .+ ++. ...+|||++|.+++.+|+.+|
T Consensus 65 ~~~~~l~~~~~-~vi~~g~-~~~----~~-~~--l~~--~~~~i~l~~~~e~~~~R~~~r 113 (175)
T 1via_A 65 KMADFFSSCEK-ACIATGG-GFV----NV-SN--LEK--AGFCIYLKADFEYLKKRLDKD 113 (175)
T ss_dssp HHHHHHTTCCS-EEEECCT-TGG----GS-TT--GGG--GCEEEEEECCHHHHTTCCCGG
T ss_pred HHHHHHHccCC-EEEECCC-CEe----hh-hH--Hhc--CCEEEEEeCCHHHHHHHHhcc
Confidence 55666654433 3555 54 221 11 10 111 246899999999999999877
No 26
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.94 E-value=3.1e-10 Score=101.26 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=62.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH-
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN- 108 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~- 108 (327)
.+.++|+|+||||||||||...|++.++..+. .....+|++|...|..|++||+++.-.+...+..+.|..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~--------~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~ 88 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFV--------YPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEF 88 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEE--------CCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEE--------eeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhh
Confidence 35689999999999999999999998764332 234578999999999999998875432211110011111
Q ss_pred ---------HHHHHHHHHHhCCCCeEEEc
Q 020362 109 ---------HASLAIESILSRDRLPIIAG 128 (327)
Q Consensus 109 ---------~a~~~i~~i~~~gk~pIvvG 128 (327)
.-...++++.++|+.+|+..
T Consensus 89 ~~~~~n~YGt~~~~v~~~l~~G~~vildi 117 (197)
T 3ney_A 89 GSYQGNMFGTKFETVHQIHKQNKIAILDI 117 (197)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred hhhhceecccchhhHHHHHhcCCeEEEEE
Confidence 01345788888999877654
No 27
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.93 E-value=1.1e-08 Score=89.68 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=68.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
++.+|+|+||+|||||||+..|+..+|..+++.|.+...... .....|. . +. +.....+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~--------~~~~~g~-------~-~~-~~~~~~~~~~~ 90 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI--------ATMQRGI-------P-LT-DEDRWPWLRSL 90 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH--------HHHHTTC-------C-CC-HHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH--------HHHhcCC-------C-CC-CcccccHHHHH
Confidence 467999999999999999999999999999998875310000 0000111 0 11 11111122222
Q ss_pred HHHHHHHHhCCCCeEEEcCch--HHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 111 SLAIESILSRDRLPIIAGGSS--SYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~--~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
...+......+...|+..+.. .+.+. +... ..+..+|||+++.+++.+|+.+|-..
T Consensus 91 ~~~~~~~~~~g~~viid~~~~~~~~~~~-l~~~------~~~~~vv~l~~~~e~l~~Rl~~R~~~ 148 (200)
T 4eun_A 91 AEWMDARADAGVSTIITCSALKRTYRDV-LREG------PPSVDFLHLDGPAEVIKGRMSKREGH 148 (200)
T ss_dssp HHHHHHHHHTTCCEEEEECCCCHHHHHH-HTTS------SSCCEEEEEECCHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCEEEEchhhhHHHHHH-HHHh------CCceEEEEEeCCHHHHHHHHHhcccC
Confidence 233333445565545544321 12221 1111 11457899999999999999988643
No 28
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.92 E-value=1.3e-09 Score=100.48 Aligned_cols=112 Identities=20% Similarity=0.414 Sum_probs=73.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch--hcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV--YKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv--y~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
...|+|+|++||||||++..||+.+|..++++|.+.. +.|.++ .+ + .+.+....|++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i-------~~----------i---~~~~ge~~fr~~ 107 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSV-------AE----------I---FEHFGESVFREK 107 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCH-------HH----------H---HHHHCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccH-------HH----------H---HHHhCcHHHHHH
Confidence 6789999999999999999999999999999997542 112211 11 0 112455668777
Q ss_pred HHHHHHHHHhC-CCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhh
Q 020362 110 ASLAIESILSR-DRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 110 a~~~i~~i~~~-gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~R 170 (327)
..+.+.++... ....|.+|| |..+..-- .... + ...+|||+++.+++.+|+.+|
T Consensus 108 e~~~l~~l~~~~~~~Via~Gg-G~v~~~~~----~~~l-~-~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 108 ETEALKKLSLMYHQVVVSTGG-GAVIRPIN----WKYM-H-KGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp HHHHHHHHHHHCSSEEEECCG-GGGGSHHH----HHHH-T-TSEEEEEECCHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCcEEecCC-CeecCHHH----HHHH-h-CCcEEEEECCHHHHHHHHhhc
Confidence 77777777665 444444554 32211000 0011 1 246899999999999999863
No 29
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.91 E-value=4.7e-09 Score=90.07 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=33.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
++.+|+|+|++||||||+|..|++.+|..+|++|.+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~ 38 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELL 38 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHH
Confidence 4679999999999999999999999999999999763
No 30
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.91 E-value=1.2e-08 Score=88.77 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
.+..+++|+||+|||||||+..|+..++. ++-.....+.++...++.++.+++.+ ...|..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 66 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALAE---------IKISISHTTRPKRPGDQEGVDYFFID---------ETRFQAM 66 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSSS---------EEECCCEECSCCCTTCCBTTTBEECC---------HHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC---------eEEeceeccCCCchhHhcCceEEecc---------HHHHHHH
Confidence 35679999999999999999999988752 22233455666666666777766543 1223322
Q ss_pred H-------------------HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEe-CCHHHHHHHhhh
Q 020362 110 A-------------------SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVD-VSLPVLHSFVSE 169 (327)
Q Consensus 110 a-------------------~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~-~~~e~L~~RL~~ 169 (327)
. ...+.++...|+.+|+. +....+..+.. ......++++. ++.+++.+||.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d-~~~~~~~~~~~-------~~~~~~~v~~~~~~~e~l~~Rl~~ 138 (205)
T 3tr0_A 67 VKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLE-IDWQGARQIRE-------LFPPALSIFILPPSIEALRERLIK 138 (205)
T ss_dssp HHHTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEE-CCHHHHHHHHH-------HCTTCEEEEEECSCHHHHHHHHHT
T ss_pred HhcCcEEeeeeeecccccchHHHHHHHHHcCCeEEEE-ECHHHHHHHHH-------hCCCcEEEEEECcCHHHHHHHHHH
Confidence 2 13456667778765544 33222211111 01123445554 569999999999
Q ss_pred hh
Q 020362 170 RV 171 (327)
Q Consensus 170 Rv 171 (327)
|-
T Consensus 139 R~ 140 (205)
T 3tr0_A 139 RR 140 (205)
T ss_dssp CT
T ss_pred hC
Confidence 84
No 31
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=92.76 Aligned_cols=124 Identities=12% Similarity=0.162 Sum_probs=69.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
++++|+|+|++||||||+|..|++.+|..+|++|.+-... ..-++ + ..+ .+...+. ..+...........
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~-~~~~~--~-~~~--~i~~~~~----~g~~~~~~~~~~~~ 80 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREE-LASES--E-RSK--LIRDIME----RGDLVPSGIVLELL 80 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH-HHHTC--H-HHH--HHHHHHH----TTCCCCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHH-HHhCC--H-HHH--HHHHHHH----cCCcCCHHHHHHHH
Confidence 4679999999999999999999999999999998753110 00000 0 000 0011010 01111222233333
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHH---HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYI---KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~---~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.+.+......++ .||++|..... +.+... .....++|+|++|.+++.+|+.+|-
T Consensus 81 ~~~i~~~~~~~~-~vi~dg~~~~~~~~~~l~~~------~~~~~~~i~l~~~~~~~~~R~~~R~ 137 (199)
T 2bwj_A 81 KEAMVASLGDTR-GFLIDGYPREVKQGEEFGRR------IGDPQLVICMDCSADTMTNRLLQMS 137 (199)
T ss_dssp HHHHHHHTTSCS-CEEEETCCSSHHHHHHHHHH------TCCCSEEEEEECCHHHHHHHHHHTC
T ss_pred HHHHhcccccCc-cEEEeCCCCCHHHHHHHHHh------cCCCCEEEEEECCHHHHHHHHHcCC
Confidence 344444434455 46667653221 111110 0123468999999999999998884
No 32
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.90 E-value=7.9e-09 Score=93.63 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=76.6
Q ss_pred ccccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchh---cCcccccCCCChhhhcCccc-eeccccC-----
Q 020362 26 HFFRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVY---KGLDIVTNKVTEEECHGVPH-HLLGIIE----- 96 (327)
Q Consensus 26 ~~~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy---~gldI~Takp~~~E~~gvph-hlid~~~----- 96 (327)
+||..++.+|+|.|++||||||+|..||+++|..+++.|-++.. .|++..--. ..+|. .+. .+..+..
T Consensus 8 ~~m~~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~~~-~~~E~--~~~~~~~~~~~~~~~~ 84 (223)
T 3hdt_A 8 RFMGNKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFR-LADEK--AGNNLLYRLGGGRKID 84 (223)
T ss_dssp ----CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------
T ss_pred cccCCCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHHHH-HHHhh--ccccHHHHHhcccccc
Confidence 66766778999999999999999999999999999998865521 233321000 00111 011 0111100
Q ss_pred ----CC--cccCH-HHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhh
Q 020362 97 ----PN--ANFTA-TDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSE 169 (327)
Q Consensus 97 ----~~--~~~s~-~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~ 169 (327)
+. .+... ........+.+.++.+++. .||+|-.+-|+-....+ .-+++.|||++|.+++.+|+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~f~~~~~~i~~la~~~~-~Vi~Grggg~vl~~~~~-------~~~~~~VfL~A~~e~r~~Ri~~ 156 (223)
T 3hdt_A 85 LHSKPSPNDKLTSPENLFKFQSEVMRELAESEP-CIFVGRAAGYVLDQDED-------IERLIRIFVYTDKVKKVQRVME 156 (223)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHSC-EEEESTTHHHHHHHCTT-------CCEEEEEEEECCHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHhCCC-EEEEeCCcchhcccccC-------CCCeEEEEEECCHHHHHHHHHH
Confidence 00 00111 1112333456677765554 45664333332100022 1247899999999999999987
Q ss_pred hhhhhhhccHHHHHHhhhc
Q 020362 170 RVDRMVELGLVEEVKQMFD 188 (327)
Q Consensus 170 Rv~~Ml~~Gl~~Ev~~l~~ 188 (327)
|-..- .....++++++..
T Consensus 157 ~~~~~-~~~a~~~I~~~d~ 174 (223)
T 3hdt_A 157 VDCID-EERAKRRIKKIEK 174 (223)
T ss_dssp HHTCC-HHHHHHHHHHHHH
T ss_pred hcCCC-HHHHHHHHHHHHH
Confidence 74321 2234455555443
No 33
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.90 E-value=2.9e-09 Score=90.35 Aligned_cols=110 Identities=18% Similarity=0.343 Sum_probs=69.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc-CcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
-.+|+|+|++||||||+|..||+++|.++|++|.+-.-. |. +..+ ++ ..+....|.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~-------~~~~----------~~---~~~g~~~~~~~~ 66 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGL-------SVRE----------IF---EELGEDNFRMFE 66 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTS-------CHHH----------HH---HHTCHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCC-------CHHH----------HH---HHhCHHHHHHHH
Confidence 368999999999999999999999999999999754211 11 1111 01 012334465555
Q ss_pred HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhh
Q 020362 111 SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 111 ~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~R 170 (327)
.+.+..+.+.+...|+..|.+..+ . . .+ +....+|||++|++++.+|+.+|
T Consensus 67 ~~~l~~~~~~~~~~Vi~~g~g~~~----~-~--~l--~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 67 KNLIDELKTLKTPHVISTGGGIVM----H-E--NL--KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp HHHHHHHHTCSSCCEEECCGGGGG----C-G--GG--TTSEEEEEEECCHHHHHHHHCC-
T ss_pred HHHHHHHHhcCCCEEEECCCCEec----h-h--HH--hcCCEEEEEECCHHHHHHHHhcc
Confidence 566666665444315554433221 1 1 01 12357899999999999999888
No 34
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.89 E-value=1.4e-08 Score=85.50 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=32.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+|+|+|++||||||++..|+++++..+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccc
Confidence 48999999999999999999999999999999754
No 35
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.88 E-value=6.2e-09 Score=89.28 Aligned_cols=110 Identities=14% Similarity=0.168 Sum_probs=65.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
.++++|+|+|++||||||++..|++.++..+++.|.+..-. .+.. ..+......-+......+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~ 72 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE--QLYD--------------GYDEEYDCPILDEDRVVDE 72 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH--TCEE--------------EEETTTTEEEECHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc--chhh--------------hhhhhhcCccCChHHHHHH
Confidence 34678999999999999999999999999999998753211 1110 0000000001222223322
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+..+.+.|.. |+.+....+ +...+...+|||+++.+++.+|+.+|-
T Consensus 73 ----~~~~~~~g~~-vv~~~~~~~-----------~~~~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 73 ----LDNQMREGGV-IVDYHGCDF-----------FPERWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp ----HHHHHHHCCE-EEECSCCTT-----------SCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred ----HHHHHhcCCE-EEEechhhh-----------cchhcCCEEEEEECCHHHHHHHHHHcC
Confidence 3334444554 343321111 112234578999999999999999884
No 36
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.88 E-value=1.2e-08 Score=94.59 Aligned_cols=121 Identities=17% Similarity=0.065 Sum_probs=72.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC-CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF-PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
+.+|+|+|++||||||+|..|++++ +..+|++|.++. .+.-.+ .|.. +.++. -....+.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~--~~~~~~--------~g~~----~~~~~---~~~~~~~~~~ 64 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ--SIMAHE--------ERDE----YKYTK---KKEGIVTGMQ 64 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH--HHTTSC--------CCC-------CCH---HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHH--HhccCC--------cccc----cccch---hhhhHHHHHH
Confidence 5799999999999999999999985 889999995441 111000 0100 00000 0112233334
Q ss_pred HHHHHHHH---hCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 111 SLAIESIL---SRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 111 ~~~i~~i~---~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
...+.... +.| ..||+.|+.. +++.+..- .....++..+|+|++|.+++.+|+.+|..+
T Consensus 65 ~~~~~~~l~~~~~g-~~vi~d~~~~~~~~~~~l~~~---~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~ 129 (301)
T 1ltq_A 65 FDTAKSILYGGDSV-KGVIISDTNLNPERRLAWETF---AKEYGWKVEHKVFDVPWTELVKRNSKRGTK 129 (301)
T ss_dssp HHHHHHHTTSCTTC-CEEEECSCCCCHHHHHHHHHH---HHHTTCEEEEEECCCCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhhccCC-CEEEEeCCCCCHHHHHHHHHH---HHHcCCcEEEEEEECCHHHHHHHHHhccCC
Confidence 44555555 444 4577777663 23332210 001134567999999999999999999753
No 37
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.86 E-value=8.9e-09 Score=89.04 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA 110 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a 110 (327)
+.++++|+||||||||||+..|+..++.. .+..+...|.+|...|..|+.||+++.- .|..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--------~~~~i~~ttr~~~~ge~~g~~~~~~~~~---------~~~~~~ 66 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--------FAYPIPHTTRPPKKDEENGKNYYFVSHD---------QMMQDI 66 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--------EECCCCEECSCC---CCBTTTBEECCHH---------HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--------EEEeeeccCCCCCccccCCCeeEEeCHH---------HHHHHH
Confidence 35799999999999999999999876421 1233567788888888889988876422 222211
Q ss_pred -------------------HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCC-HHHHHHH
Q 020362 111 -------------------SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVS-LPVLHSF 166 (327)
Q Consensus 111 -------------------~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~-~e~L~~R 166 (327)
...++++.++|+.+|+..- ...++.+.. ...+..+|++.+| .++|.+|
T Consensus 67 ~~~~~l~~~~~~~n~yg~~~~~i~~~l~~g~~vil~id-~~g~~~~~~-------~~~~~~~ifi~~p~~~~l~~R 134 (180)
T 1kgd_A 67 SNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVE-PQALKVLRT-------AEFAPFVVFIAAPTITPGLNE 134 (180)
T ss_dssp HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECC-GGGHHHHSS-------TTTCEEEEEEECCSCCTTSCC
T ss_pred HcCCceEEEEEcCccccccHHHHHHHHHCCCeEEEEEC-HHHHHHHHH-------hCCCcEEEEEECCCHHHHHhh
Confidence 2346677788888777532 222222221 1124567788765 5666555
No 38
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.86 E-value=2.1e-09 Score=91.14 Aligned_cols=111 Identities=16% Similarity=0.254 Sum_probs=65.8
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASL 112 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~ 112 (327)
++|+|+|++||||||+|..|++.+|..+|++|.+.... .|.+. -++++ ......|......
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--------------~g~~~--~~~~~---~~~~~~~~~~~~~ 63 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT--------------SGMTV--ADVVA---AEGWPGFRRRESE 63 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--------------HCSCH--HHHHH---HHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--------------hCCCH--HHHHH---HcCHHHHHHHHHH
Confidence 57999999999999999999999999999999763211 11110 00000 0112234444444
Q ss_pred HHHHHHhCCCCeEEE-cCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhh--hh
Q 020362 113 AIESILSRDRLPIIA-GGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVS--ER 170 (327)
Q Consensus 113 ~i~~i~~~gk~pIvv-GGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~--~R 170 (327)
.+..+. +...||. ||.......... .++ . ...+|||++|.+++.+|+. .|
T Consensus 64 ~~~~l~--~~~~vi~~g~~~~~~~~~~~----~l~-~-~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 64 ALQAVA--TPNRVVATGGGMVLLEQNRQ----FMR-A-HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp HHHHHC--CSSEEEECCTTGGGSHHHHH----HHH-H-HSEEEEEECCHHHHHHHHHHHHC
T ss_pred HHHHhh--cCCeEEECCCcEEeCHHHHH----HHH-c-CCeEEEEECCHHHHHHHHhhccC
Confidence 555554 3334554 432211111111 111 1 2478999999999999998 77
No 39
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.85 E-value=2.8e-08 Score=90.60 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=72.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC--CeEEeCCccchhcCcccccCCCChh---hhcCccceeccccCCCcccCHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP--AEIINSDKMQVYKGLDIVTNKVTEE---ECHGVPHHLLGIIEPNANFTAT 104 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~--~eiIs~Ds~qvy~gldI~Takp~~~---E~~gvphhlid~~~~~~~~s~~ 104 (327)
.++.+|+|+|++||||||+|..|++.++ ..+++.|.++- .++ ... ...|.. ..++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~--~~~------~~~~i~~~~g~~---------~~~~~~~ 92 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS--QHP------HYLELQQEYGKD---------SVEYTKD 92 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT--TST------THHHHHTTCSST---------THHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH--hch------hHHHHHHHcCch---------HHHHhhH
Confidence 4568999999999999999999999987 46778886542 111 100 001100 0011111
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEcCch--HHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhhh
Q 020362 105 DFRNHASLAIESILSRDRLPIIAGGSS--SYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDRM 174 (327)
Q Consensus 105 ~f~~~a~~~i~~i~~~gk~pIvvGGT~--~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~M 174 (327)
.+.+.....++.+...|...||.|+-. .+...+..- .....+.+.++++++|.+++.+|+..|...+
T Consensus 93 ~~~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~---l~~~g~~v~lv~l~~~~e~~~~R~~~R~~~~ 161 (253)
T 2p5t_B 93 FAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQL---LKNKGYEVQLALIATKPELSYLSTLIRYEEL 161 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH---HHHTTCEEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHH---HHHCCCcEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 133444555666666665545544322 122222210 0112345667788999999999999997654
No 40
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.84 E-value=7.9e-09 Score=96.65 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=71.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC--CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF--PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~--~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
.++.+|+|+||+||||||++..|++++ +..+||+|.+.... +...+.. .. ++ .....+....|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~--------~~~~~~~--~~--~~--~~a~~~~~~~~~ 96 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH--------PNFDELV--KL--YE--KDVVKHVTPYSN 96 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS--------TTHHHHH--HH--HG--GGCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhc--------hhhHHHH--HH--cc--chhhhhhhHHHH
Confidence 457899999999999999999999998 77899998765221 0000000 00 00 000011122333
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhh-cccceEEEEEeCCHHHH----HHHhhhhh
Q 020362 108 NHASLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQ-LRYECFFLWVDVSLPVL----HSFVSERV 171 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~-~~~~~~~i~L~~~~e~L----~~RL~~Rv 171 (327)
......+++..+.|+. ||+.|+.. ++..+.. .++ ..++..++++.+|++++ .+|+..|+
T Consensus 97 ~~~~~~v~~~l~~g~~-vIld~~~~~~~~~~~~~~----~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 97 RMTEAIISRLSDQGYN-LVIEGTGRTTDVPIQTAT----MLQAKGYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHHHHHHHHHHHHTCC-EEECCCCCCSHHHHHHHH----HHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCe-EEEECCCCCHHHHHHHHH----HHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4455666777766765 44444431 2222221 011 23566678999999998 67776554
No 41
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.82 E-value=1.7e-08 Score=89.54 Aligned_cols=124 Identities=12% Similarity=0.077 Sum_probs=66.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchh---cCcccccCCCChhhhcCccce-ec-cccCC-Cccc-CH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVY---KGLDIVTNKVTEEECHGVPHH-LL-GIIEP-NANF-TA 103 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy---~gldI~Takp~~~E~~gvphh-li-d~~~~-~~~~-s~ 103 (327)
+..+|+|.|++||||||++..||+++|..+++.|-+... .|++. ...+..+-.+. +. .++.. ...+ ..
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D~~~~~~~a~~~g~~~-----~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 79 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYSKELLDEVAKDGRYSK-----EVLERFDEKPMNFAFIPVPAGGTTISLE 79 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEECHHHHHHTTCC--------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEECHHHHHHHHHhcCCCH-----HHHHHHhhhchhHHHHHhcccccccccc
Confidence 356999999999999999999999999999973321110 12221 00000010000 00 00000 0000 00
Q ss_pred HHHHHHHHHHHHHHH--hCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhh
Q 020362 104 TDFRNHASLAIESIL--SRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 104 ~~f~~~a~~~i~~i~--~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~R 170 (327)
........+.+.++. .++ ..|++|..+-|+ +.+. -..+.|||++|.+++.+|+.+|
T Consensus 80 ~~~~~~~~~~i~~la~~~~~-~~Vi~Gr~g~~v---l~~~-------~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 80 QDIAIRQFNFIRKKANEEKE-SFVIVGRCAEEI---LSDN-------PNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp CHHHHHHHHHHHHHHHTSCC-CEEEESTTHHHH---TTTC-------TTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCC-CEEEEECCcchh---cCCC-------CCeEEEEEECCHHHHHHHHHHH
Confidence 111234456667766 444 456776444442 3321 2468999999999999999876
No 42
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.81 E-value=1.1e-08 Score=87.71 Aligned_cols=36 Identities=28% Similarity=0.530 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
++++|+|+|++||||||++..|++.+|..+|++|.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 40 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL 40 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHH
Confidence 357999999999999999999999999999999864
No 43
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.80 E-value=1.2e-08 Score=95.02 Aligned_cols=36 Identities=36% Similarity=0.441 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+.+.+|+|+|++||||||+|..|+ .+|..+|++|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHH
Confidence 456799999999999999999999 589999999986
No 44
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.78 E-value=7.7e-09 Score=86.58 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=30.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
++|+|+||+||||||+|..| +.+|..+++.|..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~ 34 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDV 34 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHH
Confidence 58999999999999999999 9999999997653
No 45
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.78 E-value=4.6e-09 Score=88.72 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=66.3
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASLA 113 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~~ 113 (327)
.|+|+|++||||||+|..|++.++..+|++|.+..-. .+ . ...+ ++ ..+....|.......
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~---~g--~-~~~~----------~~---~~~~~~~~~~~~~~~ 62 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKR---EG--L-SIPQ----------IF---EKKGEAYFRKLEFEV 62 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHH---HT--S-CHHH----------HH---HHSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHH---cC--C-CHHH----------HH---HHhChHHHHHHHHHH
Confidence 6899999999999999999999999999999763110 00 0 0000 00 012233454444445
Q ss_pred HHHHHhCCCCeEEEcCchHHH-HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 114 IESILSRDRLPIIAGGSSSYI-KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 114 i~~i~~~gk~pIvvGGT~~Y~-~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+..+.+ .+..||+.|.+..+ ..... .++ . ...+|||++|.+++.+|+.+|-
T Consensus 63 l~~l~~-~~~~Vi~~g~~~~~~~~~~~----~l~-~-~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 63 LKDLSE-KENVVISTGGGLGANEEALN----FMK-S-RGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp HHHHTT-SSSEEEECCHHHHTCHHHHH----HHH-T-TSEEEEEECCHHHHHHHCBCTT
T ss_pred HHHHhc-cCCeEEECCCCEeCCHHHHH----HHH-c-CCEEEEEECCHHHHHHHHhCCC
Confidence 555543 33445653322211 11110 111 1 2478999999999999998873
No 46
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.78 E-value=3.2e-09 Score=90.11 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=64.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchh-cCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVY-KGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy-~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
++.+|+|+||+|||||||+..||..++..++++|.+..- .+.++ +. +. +.+....|...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~~~i-------------~~----i~---~~~g~~~~~~~ 62 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADV-------------GW----VF---DLEGEEGFRDR 62 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCH-------------HH----HH---HHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhCcCH-------------HH----HH---HHHhHHHHHHH
Confidence 356899999999999999999999999999998865210 01110 00 00 00112234444
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
....+..+.....+.+.+||......... +..... .++++++++.+++.+|+.+|-
T Consensus 63 ~~~~l~~l~~~~~~v~~~~~~~~~~~~~~-----~~l~~~-~~~i~l~~~~~~l~~R~~~r~ 118 (173)
T 1kag_A 63 EEKVINELTEKQGIVLATGGGSVKSRETR-----NRLSAR-GVVVYLETTIEKQLARTQRDK 118 (173)
T ss_dssp HHHHHHHHHTSSSEEEECCTTGGGSHHHH-----HHHHHH-SEEEECCCCHHHHHSCC----
T ss_pred HHHHHHHHHhCCCeEEECCCeEEecHHHH-----HHHHhC-CEEEEEeCCHHHHHHHHhCCC
Confidence 44556666554443333443211111100 000112 357899999999999998874
No 47
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.77 E-value=7.1e-09 Score=89.91 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=33.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
..++.+|+|+|++||||||++..|++. |..+|++|.+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~ 41 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDAL 41 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHH
Confidence 355789999999999999999999998 9999999975
No 48
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.75 E-value=2.4e-08 Score=90.88 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe----------EEeCCccchhcCcccccCCCChhhhcCccceeccccCCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE----------IINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNA 99 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e----------iIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~ 99 (327)
.++.+|+|+|++||||||+|..|++.+|.. +|++|.+ |+.+.-++ ..... .| -+.+-+| +
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~--~~~~~~~~--~~~~~-~g----~~~f~~~-~ 89 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF--YRVLTSEQ--KAKAL-KG----QFNFDHP-D 89 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG--BCCCCHHH--HHHHH-TT----CSCTTSG-G
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc--ccccChhh--hhhhc-cC----CCCCCCc-c
Confidence 346799999999999999999999999987 8999985 54331100 00000 11 0111122 2
Q ss_pred ccCHHHHHHHHHHHHHHHHh-----------------------CCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEE
Q 020362 100 NFTATDFRNHASLAIESILS-----------------------RDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWV 156 (327)
Q Consensus 100 ~~s~~~f~~~a~~~i~~i~~-----------------------~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L 156 (327)
.++...+.+. ++.+.. .....||+.|...+.+ +.+...++ .+|||
T Consensus 90 ~~d~~~l~~~----L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~-------~~~~~~~d-~vi~l 157 (252)
T 1uj2_A 90 AFDNELILKT----LKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS-------QEVRDLFQ-MKLFV 157 (252)
T ss_dssp GBCHHHHHHH----HHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS-------HHHHHHCS-EEEEE
T ss_pred hhhHHHHHHH----HHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC-------HHHHHhcC-eeEEE
Confidence 3555555443 334331 1223466666443211 12222344 58999
Q ss_pred eCCHHHHHHHhhhh
Q 020362 157 DVSLPVLHSFVSER 170 (327)
Q Consensus 157 ~~~~e~L~~RL~~R 170 (327)
+++.+++.+|+..|
T Consensus 158 ~~~~e~~~~R~~~R 171 (252)
T 1uj2_A 158 DTDADTRLSRRVLR 171 (252)
T ss_dssp ECCHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHH
Confidence 99999999999877
No 49
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.73 E-value=7e-08 Score=83.69 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=62.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHH-
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHA- 110 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a- 110 (327)
+++++|+||+|||||||...|+..+... .......+|.+|...|..|+.+|..+ ...|..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~ge~~g~~~~~~~---------~~~~~~~~~ 63 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVS---------VDEFKSMIK 63 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG--------EECCCEEECSCCCTTCCBTTTBEECC---------HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc--------ceEEeeccccCCCCCccCCeeeeecC---------HHHHHHHHh
Confidence 3579999999999999999999876421 11234556777777777777766542 22232221
Q ss_pred ------------------HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCH-HHHHHHhhhhh
Q 020362 111 ------------------SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSL-PVLHSFVSERV 171 (327)
Q Consensus 111 ------------------~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~-e~L~~RL~~Rv 171 (327)
.+.++++.++|+.+|+ .....-.+.+.. ....+..+|++.+|. ++|.+||.+|-
T Consensus 64 ~~~~~e~~~~~~~~yg~~~~~i~~~l~~g~~~il-~~~~~g~~~l~~------~~~~~~~~i~i~~p~~~~l~~Rl~~Rg 136 (186)
T 3a00_A 64 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCIL-DIDMQGVKSVKA------IPELNARFLFIAPPSVEDLKKRLEGRG 136 (186)
T ss_dssp TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEE-ECCHHHHHHHHT------CGGGCCEEEEEECSCC-----------
T ss_pred hcceeeEEEEeceeccCcHHHHHHHHHcCCeEEE-EEcHHHHHHHHH------hcCCCeEEEEEECcCHHHHHHHHHhcC
Confidence 2456677777876554 222111122221 012345678888855 99999999885
No 50
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.71 E-value=8.3e-08 Score=84.04 Aligned_cols=109 Identities=24% Similarity=0.260 Sum_probs=63.5
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC---CCe--EEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF---PAE--IINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFT 102 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~---~~e--iIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s 102 (327)
+..++.+|+|+||+|||||||+..|+..+ |.. +++.|.+. +++. .++ .++
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~--~~~~-----------~~~------------~~~ 75 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR--HGLN-----------RDL------------SFK 75 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT--TTTT-----------TTC------------CSS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh--hHhh-----------ccc------------CcC
Confidence 45667899999999999999999999988 444 56655432 2211 010 122
Q ss_pred HHH---HHHHHHHHHHHHHhCCCCeEEEcCch---HHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHh
Q 020362 103 ATD---FRNHASLAIESILSRDRLPIIAGGSS---SYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFV 167 (327)
Q Consensus 103 ~~~---f~~~a~~~i~~i~~~gk~pIvvGGT~---~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL 167 (327)
..+ +..........+...+. .+++.++. .+++.+... .....+.++||+++.+++.+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~vi~~~~~~~~~~r~~~~~~-----~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 76 AEDRAENIRRVGEVAKLFADAGI-ICIASLISPYRTDRDACRSL-----LPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-EEEEECCCCCHHHHHHHHHT-----SCTTSEEEEEECCCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCc-eEEEecCCchHHHHHHHHHh-----cCCCCEEEEEEeCCHHHHHHhc
Confidence 222 22222233344444454 44443333 233333221 1223567899999999999997
No 51
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.70 E-value=7.8e-08 Score=82.40 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=66.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF---PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
+..+|+|+|++||||||++..|++.+ |..++..|...+.+++.. .. . +.+ ......|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~-----------~~-----~-~~~--~~~~~~~~ 64 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK-----------NL-----G-FSP--EDREENVR 64 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT-----------TC-----C-SSH--HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh-----------cc-----c-ccc--ccHHHHHH
Confidence 46789999999999999999999987 878886665444332210 00 0 000 01123344
Q ss_pred HHHHHHHHHHH-hCCCCeEEEcCchHHH---HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhh
Q 020362 108 NHASLAIESIL-SRDRLPIIAGGSSSYI---KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 108 ~~a~~~i~~i~-~~gk~pIvvGGT~~Y~---~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~R 170 (327)
+... . ..+. ..+ ..+++|+.+.|. ..+.. . ......+..+|||++|.+++.+|+.+|
T Consensus 65 ~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 65 RIAE-V-AKLFADAG-LVCITSFISPYTQDRNNARQ-I--HEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHHH-H-HHHHHHTT-CEEEEECCCCCHHHHHHHHH-H--HHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHH-H-HHHHHHCC-CEEEEecCCcchHHHHHHHH-H--hhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 4332 1 2223 334 445666654442 11110 0 001124567899999999999998765
No 52
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.69 E-value=1.8e-08 Score=88.06 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.++.+|+|+|++||||||+|..|++.++..+|++|.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~ 54 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGEL 54 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHH
Confidence 4456999999999999999999999999999999864
No 53
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.69 E-value=1.1e-07 Score=81.18 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=31.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKM 66 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~ 66 (327)
+.+|+|+|++||||||++..|+++++ ..+++.|.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 46899999999999999999999998 889987753
No 54
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.69 E-value=3e-08 Score=85.87 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh-CCCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR-FPAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~-~~~eiIs~Ds~q 67 (327)
+++++|+|+|++||||||++..|++. +|..+|++|.+-
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~ 46 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLV 46 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHH
Confidence 34678999999999999999999999 799999999764
No 55
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.69 E-value=4e-08 Score=87.64 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.++.+|+|+|++||||||++..||+.+|..+|++|.+-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~ 42 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLL 42 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHH
Confidence 34578999999999999999999999999999998753
No 56
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.69 E-value=9.3e-08 Score=82.44 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=63.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC---C--eEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP---A--EIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTA 103 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~---~--eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~ 103 (327)
..++.+|+|+|++||||||++..|++.++ . .+++.|.++ .++. . + ..++.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~--~~~~---~-----~---------------~~~~~ 64 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR--TTVS---E-----G---------------AGFTR 64 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH--TTTT---T-----T---------------CCCCH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH--HHHh---h-----c---------------cCCCh
Confidence 34578999999999999999999998874 2 456666542 2211 0 0 01221
Q ss_pred HHH---HHHHHHHHHHHHhCCCCeEEEcCchHHH---HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhh
Q 020362 104 TDF---RNHASLAIESILSRDRLPIIAGGSSSYI---KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSE 169 (327)
Q Consensus 104 ~~f---~~~a~~~i~~i~~~gk~pIvvGGT~~Y~---~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~ 169 (327)
.+. ........+.+...| ..|++|++..|. +.+.. . .-....+.++|||++|.+++.+|+.+
T Consensus 65 ~~r~~~~~~~~~~~~~~~~~g-~~vi~d~~~~~~~~r~~~~~-~--~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 65 EERLRHLKRIAWIARLLARNG-VIVICSFVSPYKQARNMVRR-I--VEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-CEEEEECCCCCHHHHHHHHH-H--HHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred hhHHHHHHHHHHHHHHHHhCC-CEEEEeCccccHHHHHHHHH-H--hhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 111 111112222233444 557778765442 21111 0 00011357899999999999999854
No 57
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.68 E-value=1.5e-08 Score=86.88 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
++.+|+|+|++||||||++..|++.+|..++++|.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~ 38 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDI 38 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 456899999999999999999999999999999864
No 58
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.66 E-value=3.3e-08 Score=87.77 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
++.+|+|+|++||||||++..||+.++..++++|.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHH
Confidence 4568999999999999999999999999999988653
No 59
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.64 E-value=1.1e-08 Score=87.49 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=28.6
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDK 65 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds 65 (327)
++|+|+|++||||||++..|+++++ ..+++.|.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 5899999999999999999999987 66776554
No 60
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.63 E-value=4.3e-08 Score=87.70 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=37.7
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHH-HhCCCeEEeCCccchhcCcccccCCCChhhhcCccceec
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLA-TRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA-~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhli 92 (327)
+...+..+++|+||+|||||||+..|+ ..++. ++.+.++.|.+|+..+..|+.+++.
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~ 79 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN---------IVKSVSVTTRAARKGEKEGKDYYFV 79 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC----C---------EEECCCEESSCCCTTCCBTTTBEEC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC---------cccccccCCCCCCccccCCCeEEEe
Confidence 334556899999999999999999999 76543 3456678888888877777777654
No 61
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.62 E-value=1e-07 Score=87.02 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=35.6
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
|+.+..+|+|+||+||||||++..||+++|...+++|.+.
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 4455679999999999999999999999999999888764
No 62
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.60 E-value=1.8e-08 Score=89.16 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=35.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV 68 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv 68 (327)
.++.+|+|+||+||||||++..|++.+|..++++|.+..
T Consensus 3 ~~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 3 AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CCSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 345689999999999999999999999999999998653
No 63
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.59 E-value=1.4e-07 Score=83.71 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=32.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
..|+|+|++||||||+|..||+.+|..+|++|.+-
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li 40 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDML 40 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHH
Confidence 57999999999999999999999999999998754
No 64
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.59 E-value=1.4e-07 Score=83.64 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
++..|+|+|++||||||+|..||+.++..+|++|.+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~ 39 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDML 39 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHH
Confidence 3568999999999999999999999999999997653
No 65
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.58 E-value=1.7e-07 Score=82.73 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
++.+|+|+|++||||||++..|++ +|..+|++|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHH
Confidence 467999999999999999999998 99999999975
No 66
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.58 E-value=1.4e-07 Score=85.12 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=69.8
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc-CcccccCCCChhhhcCccceeccccCCCcccCHHHH
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK-GLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDF 106 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~-gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f 106 (327)
..+++++|+|+||+||||||+|..|++++|...||+..+- | .+.-.| ..... + -++++-.+-..-...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdll--R~~i~~~t---~lg~~--~----~~~~~~G~lVpde~~ 93 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLL--RAEVQSGS---PKGKE--L----KAMMERGELVPLEVV 93 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHH--HHHHTTCC---HHHHH--H----HHHHHHTCCCCHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHH--HHHHHcCC---chHHH--H----HHHHhcCCCCCHHHH
Confidence 3467899999999999999999999999999999975432 2 111111 00000 0 001110111112223
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 107 RNHASLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 107 ~~~a~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.++..+.+.+....++ -+|.+|-.- -.+.|-. ...-..++|+|+++.+++.+||..|.
T Consensus 94 ~~lv~~~l~~~~~~~~-g~ilDGfPRt~~Qa~~l~~------~~~~~~~vi~l~v~~e~~~~Rl~~R~ 154 (217)
T 3umf_A 94 LALLKEAMIKLVDKNC-HFLIDGYPRELDQGIKFEK------EVCPCLCVINFDVSEEVMRKRLLKRA 154 (217)
T ss_dssp HHHHHHHHHHHTTTCS-EEEEETBCSSHHHHHHHHH------HTCCCSEEEEEECCHHHHHHHHSCC-
T ss_pred HHHHHHHHhhcccccc-CcccccCCCcHHHHHHHHH------hCCccCEEEeccCCHHHHHHHHhccc
Confidence 3344444444333333 366666321 1111111 01113468999999999999999884
No 67
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.57 E-value=2.7e-08 Score=86.89 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
.++.+|+|+|++||||||++..|+++++...+++|.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 356799999999999999999999998765555543
No 68
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.56 E-value=7.6e-08 Score=84.08 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
.++.+|+|+|++||||||++..|+++++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 456899999999999999999999987543
No 69
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.56 E-value=3.9e-07 Score=79.78 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-CCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-PAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~Ds~q 67 (327)
.++.+|+|+|++||||||++..|++.+ +..+|+.|.+-
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~ 57 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFF 57 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccc
Confidence 345799999999999999999999998 89999999753
No 70
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.55 E-value=8.8e-08 Score=84.41 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=30.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.|+|+||+||||||+|..|++++|..+|++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 488999999999999999999999999999764
No 71
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.54 E-value=5.9e-08 Score=83.19 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=29.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF---PAEIINSDK 65 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds 65 (327)
+|+|+|++||||||++..|++++ |..++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999999999999999988 889998873
No 72
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.54 E-value=6.6e-08 Score=85.08 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=30.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.|+|+|++||||||+|..|++++|..+|++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHH
Confidence 588999999999999999999999999999764
No 73
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.53 E-value=9.7e-08 Score=86.73 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.++.+|+|+||+||||||+|..|++++|..+|++|.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~ 63 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDL 63 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHH
Confidence 4678999999999999999999999999999999865
No 74
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.51 E-value=3.7e-07 Score=94.25 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=69.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC---CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF---PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFR 107 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~ 107 (327)
++.+|+|+|++||||||+|..|++++ |..++..|...+..++.... + +++ ......|+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~---------~--------fs~--~dree~~r 111 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNL---------G--------FSP--EDREENVR 111 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTC---------C--------SSH--HHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccc---------c--------CCh--hhhHHHHH
Confidence 57899999999999999999999998 88888877554433432110 0 000 11123344
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCchHH---HHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhh
Q 020362 108 NHASLAIESILSRDRLPIIAGGSSSY---IKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 108 ~~a~~~i~~i~~~gk~pIvvGGT~~Y---~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~R 170 (327)
+. .+.++.....|. .|+++++..| .+.+.. . ......++++|||++|.+++.+|+.++
T Consensus 112 ~i-~eva~~~l~~G~-iVI~d~~s~~~~~r~~~r~-l--l~~~g~p~~vV~Ldap~Evl~~Rl~r~ 172 (630)
T 1x6v_B 112 RI-AEVAKLFADAGL-VCITSFISPYTQDRNNARQ-I--HEGASLPFFEVFVDAPLHVCEQRDVKG 172 (630)
T ss_dssp HH-HHHHHHHHHTTC-EEEEECCCCCHHHHHHHHH-H--HHTTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HH-HHHHHHHHhCCC-EEEEeCchhhHHHHHHHHH-H--HHhCCCCeEEEEEECCHHHHHHHhccc
Confidence 43 233344445554 4556644433 222211 0 001124578999999999999998743
No 75
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.50 E-value=1.1e-07 Score=81.89 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=27.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC---CCeEEeCC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF---PAEIINSD 64 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~D 64 (327)
+|+|.|++||||||++..|++.+ |..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 69999999999999999999998 88888653
No 76
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.48 E-value=6.1e-07 Score=90.69 Aligned_cols=123 Identities=13% Similarity=0.198 Sum_probs=69.0
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFT 102 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s 102 (327)
+..++.+|+++|++||||||+|..||+.+ +..++|.|.+..-. .+.. ...+++++. +
T Consensus 31 ~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~--------------~~~~-~~~~~f~~~---~ 92 (520)
T 2axn_A 31 LTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA--------------VKQY-SSYNFFRPD---N 92 (520)
T ss_dssp --CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH--------------HSCC-CCGGGGCTT---C
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh--------------ccCC-ccccccCcc---c
Confidence 34567899999999999999999999987 34578888754211 0000 001333332 2
Q ss_pred HHHHH---HHHHHHHHH---HH-hCCCCeEEEcCchH---HHHHHHcCCchhhhcccceEEEEEeCC-HHHHHHHhhhhh
Q 020362 103 ATDFR---NHASLAIES---IL-SRDRLPIIAGGSSS---YIKALVNGDAAEFQLRYECFFLWVDVS-LPVLHSFVSERV 171 (327)
Q Consensus 103 ~~~f~---~~a~~~i~~---i~-~~gk~pIvvGGT~~---Y~~all~~~~~~~~~~~~~~~i~L~~~-~e~L~~RL~~Rv 171 (327)
...|. +.+..+++. .+ ..++..||+++|+. +.+.+..- .....+.++++++.++ .+++.+|+.+|.
T Consensus 93 ~~~~~~re~~~~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~---a~~~g~~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 93 EEAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHF---AKENDFKAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHH---HHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHH---HHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence 33332 222223322 22 23445677766663 43333220 0112344667778876 788999997665
No 77
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.47 E-value=2.5e-06 Score=76.71 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=72.1
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCC---------C
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEP---------N 98 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~---------~ 98 (327)
.+++..+++|+||+|||||||...|+..+.. | ...-.+.+.|..|...++.|+.+++.+.... .
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p-----~--~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~ 84 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPL-----Y--DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFL 84 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCT-----T--TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCC-----C--ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHH
Confidence 4567789999999999999999999988652 1 0111345566666666677777766532100 0
Q ss_pred c--ccCHHHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 99 A--NFTATDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 99 ~--~~s~~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+ .+. +.++....+.++++.++|++.|+- ......+.+.+-. . -...+|.+..+.++|.+||..|-
T Consensus 85 E~~~~~-~~~yg~~~~~v~~~l~~G~illLD-LD~~~~~~i~~~l----~--~~~tI~i~th~~~~l~~Rl~~rG 151 (219)
T 1s96_A 85 EHAEVF-GNYYGTSREAIEQVLATGVDVFLD-IDWQGAQQIRQKM----P--HARSIFILPPSKIELDRRLRGRG 151 (219)
T ss_dssp EEEEET-TEEEEEEHHHHHHHHTTTCEEEEE-CCHHHHHHHHHHC----T--TCEEEEEECSSHHHHHHHHHTTS
T ss_pred HHHHHH-hccCCCCHHHHHHHHhcCCeEEEE-ECHHHHHHHHHHc----c--CCEEEEEECCCHHHHHHHHHHcC
Confidence 0 000 000000123456667777764444 3333333332211 1 13456667778899999986664
No 78
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.44 E-value=4.7e-07 Score=80.85 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=31.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.|+|+|++||||||++..|++.+|..+|++|.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHH
Confidence 6899999999999999999999999999998753
No 79
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.44 E-value=3.3e-07 Score=82.18 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
..+..|+|+|++||||||+|..||++++..+|++|.+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l 50 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDM 50 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence 3456899999999999999999999999999999864
No 80
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.44 E-value=5.9e-07 Score=79.21 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=62.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC------CeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP------AEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTA 103 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~------~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~ 103 (327)
.++.+|+|+|++||||||++..|++.++ ..+++.|.++ .++... . . +.. ....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r--~~l~~~-----------~-----~-~~~--~~r~ 81 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR--FGLNKD-----------L-----G-FSE--ADRN 81 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT--TTTTTT-----------C-----C-SSH--HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh--hhhccc-----------c-----C-CCH--HHHH
Confidence 4568999999999999999999999876 5556555432 222110 0 0 000 0011
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhh----hcccceEEEEEeCCHHHHHHHh
Q 020362 104 TDFRNHASLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEF----QLRYECFFLWVDVSLPVLHSFV 167 (327)
Q Consensus 104 ~~f~~~a~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~----~~~~~~~~i~L~~~~e~L~~RL 167 (327)
..|.. ....+......|.. ||++++.. +.+.+.. ..... ....+.++|||++|.+++.+|+
T Consensus 82 ~~~~~-~~~~~~~~l~~g~~-VI~d~~~~~~~~~~~l~~-l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 82 ENIRR-IAEVAKLFADSNSI-AITSFISPYRKDRDTARQ-LHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHH-HHHHHHHHHHTTCE-EEEECCCCCHHHHHHHHH-HHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHH-HHHHHHHHHHCCCE-EEEecCCccHHHHHHHHH-HhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 22322 22334455566765 55544332 2222211 00000 0123478999999999999996
No 81
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.43 E-value=4.1e-07 Score=82.96 Aligned_cols=39 Identities=33% Similarity=0.422 Sum_probs=33.4
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
|+.++.+|+|.||+||||||++..|++.+|..+++.|.+
T Consensus 5 m~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 5 MVSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp ----CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 445678999999999999999999999999999999986
No 82
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.41 E-value=3e-07 Score=80.08 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=31.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+|+|+|++||||||++..|++ +|..++++|.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~ 35 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLI 35 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHH
Confidence 4799999999999999999999 999999999753
No 83
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.40 E-value=6.3e-07 Score=79.07 Aligned_cols=37 Identities=32% Similarity=0.529 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
....+|+|+|++||||||+|..|++.+|..+|++|.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~ 46 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRI 46 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHH
Confidence 3457999999999999999999999999999999986
No 84
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.40 E-value=4.8e-07 Score=79.85 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=30.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.|+|+|++||||||+|..|++.+|..+|++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 489999999999999999999999999999764
No 85
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.39 E-value=1.4e-06 Score=75.48 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
++.+|+|.|++||||||++..|+++++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999876
No 86
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.39 E-value=1.7e-06 Score=74.93 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++.+|+|+||+||||||++..|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999999887
No 87
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.36 E-value=8.2e-07 Score=77.56 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=31.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+|+|+|++||||||++..|++ +|..+|++|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~ 36 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVA 36 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHH
Confidence 5899999999999999999998 899999999863
No 88
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.35 E-value=4.3e-06 Score=71.92 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=30.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC-eEEeCCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA-EIINSDKM 66 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~-eiIs~Ds~ 66 (327)
..+++|+||+|||||||+..|+..+++ ..++.|.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccch
Confidence 468999999999999999999998877 57777765
No 89
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.32 E-value=1.7e-06 Score=74.52 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=26.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
+|+|.|++||||||++..|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 68999999999999999999999986653
No 90
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.27 E-value=4.8e-06 Score=74.76 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc--hhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ--VYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q--vy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
.-..|.|+|..||||||++..|++ +|..+|++|.+- +|.- +.+...+. +.++.-++++++...+.....+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~-----~~~~~~~i--~~~fG~~~~~~dg~ldR~~L~~ 79 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAP-----AGLAMPAI--EQTFGPAFVAADGSLDRARMRA 79 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTST-----TCTTHHHH--HHHHCGGGBCTTSSBCHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcC-----CcHHHHHH--HHHhChhhcCCCCCCcHHHHHH
Confidence 346899999999999999999998 999999999853 3320 11222221 1223334454443444332222
Q ss_pred HH------H------------HHHH-HHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhh
Q 020362 109 HA------S------------LAIE-SILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSE 169 (327)
Q Consensus 109 ~a------~------------~~i~-~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~ 169 (327)
.. . +.+. .+.+.+...||+.. .+.++ . ..+...++ .++++++|+++..+|+.+
T Consensus 80 ~vF~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E----~--~~~~~~~D-~vi~V~ap~e~r~~Rl~~ 151 (210)
T 4i1u_A 80 LIFSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVE----S--RNWKARCD-RVLVVDCPVDTQIARVMQ 151 (210)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTT----C--HHHHHHCS-EEEEEECCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccc----c--CCccccCC-eEEEEECCHHHHHHHHHh
Confidence 11 0 1111 12222333345554 22111 0 01122233 588899999999999998
Q ss_pred hh
Q 020362 170 RV 171 (327)
Q Consensus 170 Rv 171 (327)
|-
T Consensus 152 Rd 153 (210)
T 4i1u_A 152 RN 153 (210)
T ss_dssp HH
T ss_pred cC
Confidence 83
No 91
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.25 E-value=9.3e-06 Score=71.17 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=34.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceec
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL 92 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhli 92 (327)
+.++++|+||+|||||||...|+..+.. . ....+...|.+|...+..|+.++.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~-~-------~~~~v~~ttr~~~~g~~~g~~~~~~ 56 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSS-I-------FGFSVSHTTRNPRPGEEDGKDYYFV 56 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTT-T-------EEECCCEECSCCCTTCCBTTTBEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCch-h-------ceeeeeeeccCCCCcccCCceEEEc
Confidence 4578999999999999999999886541 0 0111233455566656666665543
No 92
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.17 E-value=1.1e-05 Score=72.62 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.+..+|+|.|++||||||++..|++.++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999999986
No 93
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.12 E-value=4.3e-06 Score=76.12 Aligned_cols=122 Identities=14% Similarity=0.077 Sum_probs=65.9
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNHASL 112 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~ 112 (327)
-.+.|+|++||||||+|..|++.+|...|++|.+--. .+.-+| ...+. +. .+++..+...-.....+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~-~~~~~t---~lG~~--i~----~~~~~G~lvpdei~~~ll~~ 78 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRA-AVKAGT---PLGVE--AK----TYMDEGKLVPDSLIIGLVKE 78 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHH-HHHTTC---HHHHH--HH----HHHTTTCCCCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHH-hccCCC---hHHHH--HH----HHHhhccccccHHHHHHHHH
Confidence 4678999999999999999999999999998754211 111111 00000 00 11111111222233333333
Q ss_pred HHHHHHhCCCCeEEEcCchH-HHHHH-HcCCchhhhcccceEEEEEeCCHHHHHHHhhhhh
Q 020362 113 AIESILSRDRLPIIAGGSSS-YIKAL-VNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 113 ~i~~i~~~gk~pIvvGGT~~-Y~~al-l~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
.+..... .+ -+|++|... +-++- +.. .......+|+|++|.+++.+||..|.
T Consensus 79 ~l~~~~~-~~-g~ILDGfPRt~~Qa~~L~~-----~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 79 RLKEADC-AN-GYLFDGFPRTIAQADAMKE-----AGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp HHHSGGG-TT-CEEEESCCCSHHHHHHHHH-----TTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred HHhCccc-CC-CeEecCCCCcHHHHHHHHH-----hCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 3332111 22 356677421 11111 110 01123468999999999999999985
No 94
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.11 E-value=1.5e-05 Score=74.99 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=76.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
..+++|+|+|| ||+||...|.+.++. . +......+|++|...|..|+.||++. |..+|.++
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~------~--~~~~vs~TTR~~R~gE~~G~dY~Fv~--------s~eef~~~ 163 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPD------K--FGSCVPHTTRPKREYEIDGRDYHFVS--------SREKMEKD 163 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTT------T--EECCCCEECSCCCTTCCBTTTBEECS--------CHHHHHHH
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCcc------c--eeeeeeecccCCCCccccCceeEecC--------CHHHHHHH
Confidence 45678999999 799999999988752 1 22345789999999999999999871 33445444
Q ss_pred -------------------HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeC-CHHHHHHHhhh
Q 020362 110 -------------------ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDV-SLPVLHSFVSE 169 (327)
Q Consensus 110 -------------------a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~-~~e~L~~RL~~ 169 (327)
..+.|+++.++|+.+|+. .+...++.+.. ...++ ++|++.+ +.++|.+ |..
T Consensus 164 i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vild-id~~g~~~l~~------~~~~p-i~IfI~pps~~~L~~-L~~ 234 (295)
T 1kjw_A 164 IQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILD-VSANAVRRLQA------AHLHP-IAIFIRPRSLENVLE-INK 234 (295)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEC-CCTTHHHHHHH------TTCCC-EEEEECCSSHHHHHH-HCT
T ss_pred HHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEE-eCHHHHHHHHh------cccCC-eEEEEECCCHHHHHH-HHh
Confidence 245678888889876664 33333322211 11234 5667765 4788888 877
Q ss_pred hh
Q 020362 170 RV 171 (327)
Q Consensus 170 Rv 171 (327)
|.
T Consensus 235 R~ 236 (295)
T 1kjw_A 235 RI 236 (295)
T ss_dssp TS
T ss_pred cC
Confidence 75
No 95
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.11 E-value=3.3e-06 Score=75.33 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=30.2
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+|+|+||+||||+|+|..||+++|...||+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHH
Confidence 689999999999999999999999999997553
No 96
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.08 E-value=3.3e-06 Score=75.63 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+..+|+|.|+.||||||++..|++.++
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999874
No 97
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.07 E-value=3.9e-05 Score=65.64 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe--EEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE--IINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e--iIs~Ds~ 66 (327)
.+..+|+|+||+|||||||+..|+..++.. .++.|.+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 356799999999999999999999986544 5566654
No 98
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.03 E-value=7.3e-06 Score=83.27 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC-----eEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA-----EIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATD 105 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~-----eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~ 105 (327)
.+.+|+++|++||||||+|..|++.++. .+++.|.++ +.+. + +..|+..+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir--~~l~------------~-----------~~~f~~~e 425 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR--THLS------------R-----------GLGFSKED 425 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH--HHTC------------T-----------TCCSSHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh--hhhc------------c-----------cccccHHH
Confidence 4678999999999999999999998763 677776543 2110 0 00122221
Q ss_pred H---HHHHHHHHHHHHhCCCCeEEEcCchHHH---HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhh
Q 020362 106 F---RNHASLAIESILSRDRLPIIAGGSSSYI---KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSE 169 (327)
Q Consensus 106 f---~~~a~~~i~~i~~~gk~pIvvGGT~~Y~---~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~ 169 (327)
. .+.....+..+.+.|+. ||+.++..|. +.+..-. ...++.+|+|++|.+++.+|+.+
T Consensus 426 r~~~l~~i~~~~~~~l~~G~~-VI~d~~~~~~~~r~~~~~~l-----~~~d~~vV~L~~~~e~~~~Rl~r 489 (546)
T 2gks_A 426 RITNILRVGFVASEIVKHNGV-VICALVSPYRSARNQVRNMM-----EEGKFIEVFVDAPVEVCEERDVK 489 (546)
T ss_dssp HHHHHHHHHHHHHHHHHTTCE-EEEECCCCCHHHHHHHHTTS-----CTTCEEEEEEECCGGGHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHhCCCE-EEEEcCCCCHHHHHHHHHHh-----hcCCEEEEEEeCCHHHHHHHhhc
Confidence 1 12222344556666764 5666655433 2221111 11245889999999999999863
No 99
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.03 E-value=4.5e-05 Score=67.82 Aligned_cols=55 Identities=25% Similarity=0.345 Sum_probs=37.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCcccee
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHL 91 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhl 91 (327)
..+..+++|+||+|||||||...|+..+.+.|. + |.++.+..+...++.++.+.+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~------~--g~~~~~~~~~~~~~~~i~~~~ 74 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFY------F--SVSCTTRKKREKEKEGVDYYF 74 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHSTTTEE------E--CCCEECSCCCSSCCBTTTBEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEE------E--eecccCCCCCcccccCCeEEE
Confidence 355779999999999999999999987742221 1 556666555444555555443
No 100
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.02 E-value=1.8e-06 Score=75.62 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC---CCeEE--eCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF---PAEII--NSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~---~~eiI--s~Ds~ 66 (327)
..+.+|+|+|++||||||++..|+..+ ++.++ +.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 456799999999999999999999865 55554 44653
No 101
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.01 E-value=1.6e-05 Score=75.67 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-------CeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-------AEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-------~eiIs~Ds~q 67 (327)
.++.+|.|+||+|||||||+..|+..++ ..+|+.|...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 4567999999999999999999988764 4578888864
No 102
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.98 E-value=2.4e-05 Score=79.97 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=62.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC----C--eEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP----A--EIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTA 103 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~----~--eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~ 103 (327)
.++.+|+|+|++||||||+|..|+++++ . .+++.|. +++++.- +..|+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~--ir~~l~~-----------------------~~~f~~ 448 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT--VRHELSS-----------------------ELGFTR 448 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH--HHHHTCT-----------------------TCCCSH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH--HHHHhcc-----------------------ccCCCh
Confidence 3467899999999999999999999976 2 4555554 3333210 001221
Q ss_pred HH---HHHHHHHHHHHHHhCCCCeEEEcCchHHH---HHHHcCCchhhhcccceEEEEEeCCHHHHHHHhh
Q 020362 104 TD---FRNHASLAIESILSRDRLPIIAGGSSSYI---KALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVS 168 (327)
Q Consensus 104 ~~---f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~---~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~ 168 (327)
.+ ..+.....+..+...|.. ||++....|. +.+.. .....-.+++|||+++.+++.+|..
T Consensus 449 ~er~~~i~ri~~v~~~~~~~g~~-VI~~~is~~~~~R~~~r~----l~~~~g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 449 EDRHTNIQRIAFVATELTRAGAA-VIAAPIAPYEESRKFARD----AVSQAGSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCE-EEEECCCCCHHHHHHHHH----HHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHhCCCE-EEEEcCCCcHHHHHHHHH----HHHhcCCeEEEEEeCCHHHHHHHhc
Confidence 11 112222345555566654 5665444321 11110 0111113578999999999999964
No 103
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.97 E-value=2.9e-06 Score=73.50 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=32.8
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
++|+|+|++||||||++..||+.+|..+++.|.+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~ 37 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLY 37 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHH
Confidence 48999999999999999999999999999999865
No 104
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.95 E-value=2.1e-06 Score=80.34 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccch
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQV 68 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~qv 68 (327)
.++.+|+|+|++||||||+|..|++.++ ..+|++|.+..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 4567999999999999999999999887 78999998653
No 105
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.93 E-value=9.9e-06 Score=73.82 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
++.+|+|.|++||||||++..|++.++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999874
No 106
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.90 E-value=3.2e-05 Score=67.92 Aligned_cols=38 Identities=34% Similarity=0.511 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-----CeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-----AEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-----~eiIs~Ds~q 67 (327)
.+..+|+|+||+|||||||+..|+..+. ..+|+.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 4567999999999999999999998875 5678888754
No 107
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.90 E-value=1.5e-05 Score=74.76 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-------CeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-------AEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-------~eiIs~Ds~q 67 (327)
.++.+|+|+||+|||||||+..|+..++ ..+|++|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 4567999999999999999999998765 4578888754
No 108
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.89 E-value=2.3e-05 Score=77.79 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=26.8
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
+..++.+|+++|.+||||||++..|++.++...++
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~ 69 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVP 69 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCC
Confidence 34567799999999999999999999987543333
No 109
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.86 E-value=4.5e-05 Score=68.28 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+.++|+|.|+.||||||++..|++.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999873
No 110
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.85 E-value=0.0001 Score=69.21 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
...+.|||+|| ||+||...|.+.++-.+ ...++.+|.+|...|..|+.+|+++ +...|.++
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f--------~~sVs~TTR~pR~gE~dG~dY~Fv~--------s~e~fe~~ 158 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKF--------GSCVPHTTRPKREYEVDGRDYHFVS--------SREQMERD 158 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTE--------ECCCCEECSCCCTTCCBTTTBEECS--------CHHHHHHH
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhc--------cccccCCccCCcCCccCCccccccC--------CHHHHHHH
Confidence 34577899998 59999999999886422 2346789999999999999999873 22233333
Q ss_pred H-------------------HHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeC-CHHHHHHHhhh
Q 020362 110 A-------------------SLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDV-SLPVLHSFVSE 169 (327)
Q Consensus 110 a-------------------~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~-~~e~L~~RL~~ 169 (327)
. ...++++.++|+.+|+.- ...-.+.|-. .....++|++.+ +.++|.+|+..
T Consensus 159 i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdi-d~qg~~~lk~-------~~~~pi~IFI~PpS~e~L~~r~~~ 230 (292)
T 3tvt_A 159 IQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDV-SGNAIKRLQV-------AQLYPVAVFIKPKSVDSVMEMNRR 230 (292)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECC-CTHHHHHHHH-------TTCCCEEEEECCSCHHHHHHTCTT
T ss_pred HhcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEec-cchhhhhccc-------ccccceEEEEECCCHHHHHHHHhC
Confidence 2 456788888898877632 1111122211 123345666654 67899999887
Q ss_pred hhh
Q 020362 170 RVD 172 (327)
Q Consensus 170 Rv~ 172 (327)
|.+
T Consensus 231 r~~ 233 (292)
T 3tvt_A 231 MTE 233 (292)
T ss_dssp SCT
T ss_pred CCc
Confidence 753
No 111
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.85 E-value=4.2e-05 Score=77.87 Aligned_cols=28 Identities=46% Similarity=0.641 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.+..+|+|+|++|||||||+..|+..++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3567999999999999999999999874
No 112
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.84 E-value=4.8e-06 Score=75.49 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=64.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcc-cccCCCChhhh-cCccceeccc-cCCCcc--cCHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLD-IVTNKVTEEEC-HGVPHHLLGI-IEPNAN--FTAT 104 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gld-I~Takp~~~E~-~gvphhlid~-~~~~~~--~s~~ 104 (327)
.+..+|+|.|+.||||||++..|++.++...+++ |.+ +.|..|...+. +.+...+.+- +++... +-.+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~-------g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a 95 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPA-------GRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFA 95 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGG-------TCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhcccc-------ceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4568999999999999999999999884321110 111 11222321111 0011111111 121111 0112
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEcCchH---HHHHHHcCCchhh-------h--cccceEEEEEeCCHHHHHHHhhhhh
Q 020362 105 DFRNHASLAIESILSRDRLPIIAGGSSS---YIKALVNGDAAEF-------Q--LRYECFFLWVDVSLPVLHSFVSERV 171 (327)
Q Consensus 105 ~f~~~a~~~i~~i~~~gk~pIvvGGT~~---Y~~all~~~~~~~-------~--~~~~~~~i~L~~~~e~L~~RL~~Rv 171 (327)
+..+...+.|...+++|++ ||++-... ..+..-.|.+.++ . ...+.++|+|++|++++.+|+.+|-
T Consensus 96 ~R~~~~~~~i~p~l~~g~~-VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 96 GRREHLALVIEPALARGDW-VVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHHHHHHTHHHHHHTTCE-EEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHHHHHHcCCE-EEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 2222223345556677775 66654210 0111111221111 1 1336679999999999999999883
No 113
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.82 E-value=9.6e-06 Score=70.10 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-CCeEEeCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-PAEIINSD 64 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~D 64 (327)
++.+|+|+|++||||||++..|++++ |..++..|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 56799999999999999999999998 46666543
No 114
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.74 E-value=1.3e-05 Score=70.34 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=32.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+.+|+|+|++||||||++..|++.+|..++++|.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChH
Confidence 46899999999999999999999999999999986
No 115
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.74 E-value=1e-05 Score=72.89 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=33.1
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
|..++.+|+|+||+|||||||+..|++.+|...+++|.+.
T Consensus 23 ~~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~ 62 (246)
T 2bbw_A 23 MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFL 62 (246)
T ss_dssp ---CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHH
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHH
Confidence 3445689999999999999999999999998888877654
No 116
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.67 E-value=2.2e-05 Score=68.55 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC--CeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP--AEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~--~eiIs~Ds~ 66 (327)
.++.+|+|+||+|||||||+..|+..++ ..+++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 4567999999999999999999999988 889988874
No 117
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.67 E-value=2.1e-05 Score=70.44 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=34.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
..+.+|+|+|++||||||++..|++.+|..++++|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 34568999999999999999999999999999999865
No 118
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.64 E-value=4.5e-05 Score=79.81 Aligned_cols=121 Identities=16% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceec-cccCCCcccCH------
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLL-GIIEPNANFTA------ 103 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhli-d~~~~~~~~s~------ 103 (327)
.+++|+|+|| ||+||...|.+.+... +..-...+|++|...|..|+.||++ +.-.+......
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~--------~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~ 598 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDK--------FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEA 598 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccc--------eeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEE
Confidence 4578999999 3999999999887521 1223567899999999999999998 32221111111
Q ss_pred ----HHHHHHHHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEe-CCHHHHHHHhhhhh
Q 020362 104 ----TDFRNHASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVD-VSLPVLHSFVSERV 171 (327)
Q Consensus 104 ----~~f~~~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~-~~~e~L~~RL~~Rv 171 (327)
+.|+-.-.+.|++++++|+.+|+.. ....++.+.. ...++ ++|++. ++.++|.+ |..|.
T Consensus 599 ~~~~g~~YGt~~~~v~~~~~~g~~~ildi-~~~~~~~l~~------~~~~p-~~ifi~pps~~~L~~-l~~R~ 662 (721)
T 2xkx_A 599 GQYNSHLYGTSVQSVREVAEQGKHCILDV-SANAVRRLQA------AHLHP-IAIFIRPRSLENVLE-INKRI 662 (721)
T ss_pred EEECCccceeeHHHHHHHHHCCCcEEEeC-CHHHHHHHHh------cccCC-EEEEEeCCcHHHHHH-HhccC
Confidence 2233344567888899999877754 3433333321 12344 566666 45788888 87775
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.60 E-value=0.00014 Score=62.09 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=62.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
++..+++|+||+|||||||+..+. .+..+++.|.+. |+-- +.. + ...++...|...
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~---g~~~----~~~----~-----------~~~~~~~~~~~~ 62 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR---GLMS----DDE----N-----------DQTVTGAAFDVL 62 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH---HHHC----SST----T-----------CGGGHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH---HHhc----Ccc----c-----------chhhHHHHHHHH
Confidence 457899999999999999999865 345677777543 2100 000 0 001111222222
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHH---HHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhhhhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSY---IKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSERVDR 173 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y---~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~Rv~~ 173 (327)
.. ........|.. .+...++.. .+..+. -......+..++++|-|...|..|...|.+.
T Consensus 63 ~~-~~~~~~~~g~~-~~~~~~~~~s~g~~qrv~---iAral~~~p~~lllDEPt~~Ld~~~~~R~~~ 124 (171)
T 4gp7_A 63 HY-IVSKRLQLGKL-TVVDATNVQESARKPLIE---MAKDYHCFPVAVVFNLPEKVCQERNKNRTDR 124 (171)
T ss_dssp HH-HHHHHHHTTCC-EEEESCCCSHHHHHHHHH---HHHHTTCEEEEEEECCCHHHHHHHHHTCSSC
T ss_pred HH-HHHHHHhCCCe-EEEECCCCCHHHHHHHHH---HHHHcCCcEEEEEEeCCHHHHHHHHhcccCC
Confidence 21 22333344554 444444321 111110 0111234677899999999999999988743
No 120
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.59 E-value=8.4e-05 Score=69.72 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.++-++|.||+|||||+||..+|+.++..++..+.-
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 456899999999999999999999999988876543
No 121
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.55 E-value=0.00026 Score=62.77 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=23.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+.|+|-|+-||||||++..|++.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.53 E-value=0.00045 Score=62.72 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
..+..++|.||+|||||++|..+|+.++..++..+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 45678999999999999999999999888766544
No 123
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.50 E-value=0.00014 Score=65.72 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.++.+|+|.|+.||||||++..|++.++
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999999875
No 124
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.47 E-value=0.00012 Score=64.08 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.+..+++|+||+|||||||...|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567999999999999999999998875
No 125
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.46 E-value=8.2e-05 Score=67.00 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=33.1
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCCCe----------EEeCCccchhcCc
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFPAE----------IINSDKMQVYKGL 72 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~~e----------iIs~Ds~qvy~gl 72 (327)
-..++.+|.|+||+|||||||+..|+..+|.. ++..|. +|+.+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~--~~~~l 73 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR--FYKVL 73 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG--GBCCC
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc--Ccccc
Confidence 34556799999999999999999999987644 677774 56544
No 126
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.44 E-value=0.00081 Score=58.56 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
....++|+||+|||||+++..+++.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998763
No 127
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.40 E-value=0.00052 Score=63.00 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-------CCeEEeCCccch
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-------PAEIINSDKMQV 68 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-------~~eiIs~Ds~qv 68 (327)
.....++|+||+|||||++|..+|+.+ +..++..+.-.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 345579999999999999999999887 235666554443
No 128
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.38 E-value=7.3e-05 Score=69.51 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
+.|+.++|.||+|||||+||..+|+.++..++..+.-
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~ 70 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAG 70 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHH
Confidence 4467888999999999999999999999887776543
No 129
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.34 E-value=0.0008 Score=55.97 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..++|+||+|||||+++..+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999986
No 130
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.31 E-value=0.00019 Score=68.54 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV 68 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv 68 (327)
.++-|+|.||+|||||+||..+|..++..++..+.-.+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34568999999999999999999999998887654433
No 131
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.24 E-value=0.00021 Score=59.64 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..++|+||+|||||+++..+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999886
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.23 E-value=0.00019 Score=67.07 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC-------CeEE-eCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP-------AEII-NSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~-------~eiI-s~Ds~q 67 (327)
.++.+|+|+|++|||||||+..|+..++ ..++ +.|++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 4578999999999999999999998774 3345 999864
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00033 Score=63.70 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
..+.-++|.||+|||||+|+..+|+.++..++..+.-.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 86 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHH
Confidence 34567999999999999999999999999887755433
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.20 E-value=0.00066 Score=56.92 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
....++|+||+|||||+|+..++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999866
No 135
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.19 E-value=0.0003 Score=65.37 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
..++.|+|.||+|||||+||..||..++..++..+.-.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~ 84 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 84 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHH
Confidence 45678999999999999999999999999888776433
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.18 E-value=0.00024 Score=63.86 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=29.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
++-++|+||+|||||+|+..||..++..++..|.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence 4568999999999999999999999877776554
No 137
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.18 E-value=0.00022 Score=63.77 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
..++-++|.||+|||||++|..+|+.++..++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~ 71 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA 71 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 34567899999999999999999999988776544
No 138
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.17 E-value=0.0018 Score=62.96 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=65.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
..+++|+|+||+| +||...|.+.++..+.+ .|..|...|..|+.+|++
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~------------~tr~pR~gE~dG~~Y~Fv----------------- 277 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQI------------AKSEPRDAGTDQRSSGII----------------- 277 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEE------------CCCCCCCSSSCCC--CCC-----------------
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCcccccc------------ccCCCCCcccCCccCCcC-----------------
Confidence 4568899999998 89999999887643322 467888999999999986
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHHhhhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSFVSER 170 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~RL~~R 170 (327)
-...++++.++|+.+|+.=- ..=.+.|-. ...++..+|...++.++|++| .+|
T Consensus 278 ~~~~V~~~~~~Gk~~iLdId-~qg~~~l~~------~~~~p~~IFI~PPS~~~L~~~-~~r 330 (391)
T 3tsz_A 278 RLHTIKQIIDQDKHALLDVT-PNAVDRLNY------AQWYPIVVFLNPDSKQGVKTM-RMR 330 (391)
T ss_dssp CHHHHHHHHTTTCEEEECCC-HHHHHHHHH------TTCCCEEEEEECCCHHHHHHH-HHH
T ss_pred cHHHHHHHHHcCCEEEEEeC-HHHHHHHHh------CCCCCEEEEEeCcCHHHHHHH-Hhc
Confidence 24568888999998777421 110111211 112344444456678999986 444
No 139
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.13 E-value=0.00034 Score=64.04 Aligned_cols=34 Identities=32% Similarity=0.475 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
.++.++|.||+|||||++|..+|+.++..++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~ 86 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNIS 86 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence 4678999999999999999999999998876544
No 140
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.11 E-value=0.0003 Score=63.16 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
++...++|.||+|||||++|..||+.+.+.+++.+
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fa 90 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV 90 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 34457999999999999999999999988887654
No 141
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.11 E-value=0.00029 Score=66.96 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+..|+|.||||||||++|..||+.++..++..|.-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~ 86 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATT 86 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHH
Confidence 4567899999999999999999999999888776543
No 142
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.10 E-value=0.00018 Score=65.27 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=28.8
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC-CCeEEeC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF-PAEIINS 63 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~ 63 (327)
+..++++|+|.|+.||||||++..|++.+ +..+|.-
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~e 56 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPE 56 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECC
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEec
Confidence 34567899999999999999999999999 5566653
No 143
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.00039 Score=68.63 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+.++=|++.||+|||||.||.++|..++..+++.+.-.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 45678999999999999999999999999988876544
No 144
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.01 E-value=0.0004 Score=66.23 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.+..++|+||+|||||++|..||+.++..++..|..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 106 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDAT 106 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecch
Confidence 345789999999999999999999999888776643
No 145
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00041 Score=68.57 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=33.6
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+.|+=|++.||+|||||.||.++|..++..+++.+.-.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 345788999999999999999999999999988766543
No 146
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.99 E-value=0.00037 Score=61.00 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=35.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKG 71 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~g 71 (327)
....-|+|+|++|+||||+|.+|.++ |..+|+=|...+++.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~i~~~ 54 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDLKQE 54 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEEEEES
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEEEEEe
Confidence 34578999999999999999999986 899999998887763
No 147
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.99 E-value=0.00036 Score=63.70 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~ 66 (327)
.+..++|.||+|||||++|..+++.++..++..|.-
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~ 84 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcch
Confidence 456788999999999999999999998877655443
No 148
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.98 E-value=0.00021 Score=61.95 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=23.1
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
++|+|.|++||||||++..|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999885
No 149
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00045 Score=68.32 Aligned_cols=37 Identities=35% Similarity=0.410 Sum_probs=32.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
.+.++=|++.||+|||||.||.++|..++..+++.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 3457889999999999999999999999999887654
No 150
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.94 E-value=0.0004 Score=70.01 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
...+|+|+|++||||||+|..||++++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999984
No 151
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00047 Score=67.60 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=33.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+.|+=|++.||+|||||.||.++|..++..+++.+.-.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 345678999999999999999999999999988865433
No 152
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.90 E-value=0.00039 Score=59.07 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....++|+||+|||||+|+..++..+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998765
No 153
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.00074 Score=63.54 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-CCeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-PAEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~D 64 (327)
..++-|+|.||+|||||+||..+|..+ +..+++.+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~ 78 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 78 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE
Confidence 345789999999999999999999998 66665533
No 154
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.90 E-value=0.00078 Score=60.18 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
++++|+|.|+.||||||++..|++.+++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3678999999999999999999999953
No 155
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.89 E-value=0.00025 Score=62.11 Aligned_cols=90 Identities=24% Similarity=0.318 Sum_probs=48.1
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCC-ChhhhcCccceeccccCCCcccCHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKV-TEEECHGVPHHLLGIIEPNANFTATDFRNHASL 112 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp-~~~E~~gvphhlid~~~~~~~~s~~~f~~~a~~ 112 (327)
+++|+|++|||||++|.+|++. +.+++- +.|+.+ ..+.++.|.+|..+. +..-.++..+.+ ..+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~y-----------iaT~~~~d~e~~~rI~~h~~~R--~~~w~tiE~p~~-l~~ 65 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVLY-----------IATSQILDDEMAARIQHHKDGR--PAHWRTAECWRH-LDT 65 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEEE-----------EECCCC------CHHHHHHHTS--CTTEEEECCSSC-GGG
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeEE-----------EecCCCCCHHHHHHHHHHHhcC--CCCcEEEEcHhh-HHH
Confidence 3789999999999999999987 655543 344443 233345566665442 110000000011 111
Q ss_pred HHHHHHhCCCCeEEEcCchHHHHHHHc
Q 020362 113 AIESILSRDRLPIIAGGSSSYIKALVN 139 (327)
Q Consensus 113 ~i~~i~~~gk~pIvvGGT~~Y~~all~ 139 (327)
.+.... ....+||+++-++|+..++.
T Consensus 66 ~l~~~~-~~~~~VLvDclt~wl~n~l~ 91 (180)
T 1c9k_A 66 LITADL-APDDAILLECITTMVTNLLF 91 (180)
T ss_dssp TSCTTS-CTTCEEEEECHHHHHHHHHH
T ss_pred HHHhhc-ccCCeEEEcCHHHHHHHHHh
Confidence 122211 12247999999988876663
No 156
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.87 E-value=0.00078 Score=64.18 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
..++-|+|.||+|||||+||..+|+.++..++..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh
Confidence 456789999999999999999999999988776543
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.87 E-value=0.00082 Score=67.28 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
.++.++|+||+|||||++|..+|+.++..++..+.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 35789999999999999999999999999887654
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.84 E-value=0.00069 Score=63.16 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
....++|.||+|||||++|..+|+.++..++..+
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 4457899999999999999999999988766543
No 159
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.83 E-value=0.0034 Score=62.62 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=54.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcccccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDIVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
..+++|||+||+|+| |...|.+.++..+.+ ..|. |...|..|+.||+ +
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s-----------~~TR-pR~gE~dG~~Y~F----------T------- 269 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQI-----------AKSE-PRDAGTDQRSSGI----------I------- 269 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEEE-----------CCCB-C----------CB----------C-------
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCceee-----------ecCC-CCCcccccccCCc----------c-------
Confidence 456889999999999 989998887643332 2377 8899999999887 1
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHHcCCchhhhcccceEEEEEeCCHHHHHHH
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALVNGDAAEFQLRYECFFLWVDVSLPVLHSF 166 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all~~~~~~~~~~~~~~~i~L~~~~e~L~~R 166 (327)
-...|++++++|+.+|+.=- ..=.+.|-. ...++..+|...++.++|.++
T Consensus 270 s~~~V~~vl~~Gk~~iLdId-~qg~~~l~~------~~~~p~~IFI~PPS~e~L~~~ 319 (468)
T 3shw_A 270 RLHTIKQIIDQDKHALLDVT-PNAVDRLNY------AQWYPIVVFLNPDSKQGVKTM 319 (468)
T ss_dssp CHHHHHHHHTTTCEEEECCC-HHHHHHHHH------TTCCCEEEEEECSCHHHHHHH
T ss_pred cHHHHHHHHHCCCeEEEEeC-HHHHHHHHh------cCCCCEEEEEeCcCHHHHHHH
Confidence 23567888899998877421 110112211 112344444455678888863
No 160
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.83 E-value=0.00096 Score=64.07 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
.++-|+|.||+|||||+||..+|..++..++..+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 45789999999999999999999999998887654
No 161
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.83 E-value=0.0011 Score=65.65 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC----------CCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF----------PAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~----------~~eiIs~Ds 65 (327)
..+..++|+||+|||||+++..||+.+ +..++..|.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 345678899999999999999999986 556666554
No 162
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.82 E-value=0.0043 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.|+|-|+-||||||.+..|++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 163
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.82 E-value=0.00064 Score=67.37 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
.++-|+++||+|||||++|..||+.++..++..|.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 35679999999999999999999999999888775
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.82 E-value=0.0007 Score=60.68 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=27.7
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
-++|+||+|||||+|+..++..++...+..+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~ 82 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASG 82 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeH
Confidence 49999999999999999999998877666554
No 165
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.76 E-value=0.00029 Score=63.59 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=28.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
++-++|.||+|||||+||..+|+.++..++..+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~ 77 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGG 77 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCS
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEech
Confidence 4458899999999999999999998877666543
No 166
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.00096 Score=61.45 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=27.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
-++|+||+|||||+|+..||..++...|..+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g 77 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKG 77 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEEET
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEc
Confidence 39999999999999999999999877665543
No 167
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00082 Score=66.95 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
+.++=|++.||+|||||.||.++|..++..+++.+.-.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 56788999999999999999999999999988766443
No 168
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0011 Score=65.58 Aligned_cols=39 Identities=31% Similarity=0.356 Sum_probs=33.8
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
.+.++=|++.||+|||||.||.++|..++..+++.+.-.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 345788999999999999999999999999988866544
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.75 E-value=0.00095 Score=64.75 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=31.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIINS 63 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~ 63 (327)
.+++.+++|+||+|||||||+..|+..+++.+++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~ 200 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 200 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEE
Confidence 45567999999999999999999999999988873
No 170
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.71 E-value=0.00075 Score=55.75 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...-|+|.|++|||||++|..++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999999865
No 171
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.69 E-value=0.0011 Score=62.51 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=30.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
.++..+++|+||+|||||||...|+..+.|.|+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~ 156 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLS 156 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEEC
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceEEE
Confidence 4567899999999999999999999888888864
No 172
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.65 E-value=0.0011 Score=65.23 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=31.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCC--CeEEeCCccchh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFP--AEIINSDKMQVY 69 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~--~eiIs~Ds~qvy 69 (327)
++-+++.||+|||||++|..+|+.++ ..++..+.-.++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 46799999999999999999999998 777776655444
No 173
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.62 E-value=0.0012 Score=60.30 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=27.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
-++|+||+|||||+|+..|+..++...|..+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~ 106 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASG 106 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecH
Confidence 38999999999999999999998876666553
No 174
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.61 E-value=0.002 Score=67.41 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC----------CCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF----------PAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~----------~~eiIs~Ds 65 (327)
..+..++|+||+|||||++|..||+.+ +..+++.|.
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 445678999999999999999999986 666666654
No 175
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.59 E-value=0.0012 Score=59.08 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=27.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
+.+.++|+|.|+.||||||++..|++.++.
T Consensus 2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 346789999999999999999999999976
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.57 E-value=0.0011 Score=57.06 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..++|+||+|||||+|+..++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999865
No 177
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.57 E-value=0.0013 Score=60.92 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
..+.++++.||+|+|||+++..+|+.++..++..+
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 34578899999999999999999999998877654
No 178
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.55 E-value=0.005 Score=60.93 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQ 67 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~q 67 (327)
++.+|+++|++||||||++..||..+ ..-+|.+|..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 57899999999999999999999754 33478888653
No 179
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.54 E-value=0.0019 Score=63.49 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-CCeEEeCCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-PAEIINSDK 65 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-~~eiIs~Ds 65 (327)
.++-|+|.||+|||||+||..+|..+ +..+++.+.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 45789999999999999999999998 777765443
No 180
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.53 E-value=0.0014 Score=61.79 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=26.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
+..++|+||+|||||||+..+|..++..+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 467999999999999999999999876543
No 181
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.52 E-value=0.0014 Score=56.26 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+..++|.||+|+|||+++..+++.++
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999998764
No 182
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.51 E-value=0.0012 Score=58.78 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeE
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEI 60 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~ei 60 (327)
.+..+|+|.|++||||||++..|+.. ++++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 45679999999999999999999987 5543
No 183
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.51 E-value=0.00067 Score=55.98 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=25.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
..-|+|.|++|||||++|..++...+ .++..|
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~ 58 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPA 58 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEec
Confidence 44588999999999999999998776 555444
No 184
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.50 E-value=0.0011 Score=61.08 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEE
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEII 61 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiI 61 (327)
.+..++|+||+|||||++|..+++.++..++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3467899999999999999999999887654
No 185
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.48 E-value=0.0014 Score=61.71 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=30.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC-------CeEEeCCcc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP-------AEIINSDKM 66 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~-------~eiIs~Ds~ 66 (327)
..++.+|+|+||+|||||||+..|+..+. ..+|+.|..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 35678999999999999999999987652 346666654
No 186
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.46 E-value=0.0018 Score=60.93 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-----------CCeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-----------PAEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-----------~~eiIs~D 64 (327)
..+..++|.||+|+|||+++..+++.+ +..++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 346789999999999999999999876 77776654
No 187
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.46 E-value=0.0014 Score=59.97 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=22.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..++|+||+|||||++|..||+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 188
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.43 E-value=0.0018 Score=59.31 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||||||||||...|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3556799999999999999999998654
No 189
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.42 E-value=0.0013 Score=61.47 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..++|+||+|||||+++..+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999877
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.41 E-value=0.0015 Score=60.75 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=26.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC---CCeEEeCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF---PAEIINSD 64 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~D 64 (327)
...++|+||+|||||+|+..++..+ +..++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4678999999999999999999877 55555433
No 191
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.39 E-value=0.0017 Score=56.15 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=22.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+++.|+|++|||||||+..|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 192
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.38 E-value=0.0017 Score=55.26 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.7
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+.++|.||+|+|||+++..+++.+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999875
No 193
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.37 E-value=0.0019 Score=55.88 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+.++++|+|++|||||||...|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999998764
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.35 E-value=0.0027 Score=54.85 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
++..+++|+||+|||||||+..++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 195
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.35 E-value=0.0026 Score=63.64 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
..+.-|+|.||+|||||++|..++..++..++..+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~ 271 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEc
Confidence 455679999999999999999999999988887654
No 196
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.35 E-value=0.002 Score=60.12 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC------CCeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF------PAEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~------~~eiIs~D 64 (327)
..+..++|+||+|+|||+|+..+++.+ +..++..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 446789999999999999999999877 66665544
No 197
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.33 E-value=0.0019 Score=56.93 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLA 53 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA 53 (327)
++..+++|+||+|||||||+..|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 457899999999999999999888
No 198
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.33 E-value=0.0019 Score=56.14 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..+++|+||+|||||||+..|+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999874
No 199
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.0014 Score=56.53 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=22.0
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++++|+|++|||||||+..|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998765
No 200
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.32 E-value=0.0029 Score=59.57 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++.+|+|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 457899999999999999999999765
No 201
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.32 E-value=0.0023 Score=60.10 Aligned_cols=27 Identities=30% Similarity=0.619 Sum_probs=24.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
+..++|.||+|||||++|..+|+.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999999874
No 202
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.28 E-value=0.0019 Score=55.73 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.++|+||+|||||||...|+..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999988763
No 203
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.27 E-value=0.0025 Score=59.83 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=26.1
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC----CCeEEeCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF----PAEIINSD 64 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~----~~eiIs~D 64 (327)
+.++|+||+|||||+|+..++..+ +..++..+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 389999999999999999999887 45555433
No 204
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.26 E-value=0.0026 Score=67.38 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~q 67 (327)
..|+-|++.||+|||||+||+.+|..++..++..|.-.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~ 273 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHH
Confidence 45778999999999999999999999999988876543
No 205
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.25 E-value=0.0033 Score=62.10 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=28.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
...++|.||+|||||+||..+++.++..++...
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 357999999999999999999999988776544
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.24 E-value=0.015 Score=60.77 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=25.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC---CCeEEeCC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF---PAEIINSD 64 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~D 64 (327)
.++++||||||||.+|..||+.+ +..+|..|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 69999999999999999999986 44555544
No 207
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0022 Score=60.80 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=25.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...++.++|.||+|||||+++..+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999999887
No 208
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.23 E-value=0.0026 Score=59.16 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=26.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
.-++|.||+|||||+|+..+|+.++..++.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 468899999999999999999999876543
No 209
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.23 E-value=0.0025 Score=63.61 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=29.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
++-|+|+||+|||||+|+..+|...+..++..+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 4558999999999999999999999888776543
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.23 E-value=0.016 Score=61.51 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC----------CCeEEeCCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF----------PAEIINSDK 65 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~----------~~eiIs~Ds 65 (327)
.+..++|+||+|||||+++..||+.+ +..++..|.
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 45568999999999999999999987 777777654
No 211
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.19 E-value=0.0034 Score=53.23 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
....+++|+||.|||||||...|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 556799999999999999999999887
No 212
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.18 E-value=0.018 Score=54.67 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCccchh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKMQVY 69 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~qvy 69 (327)
.+..+|+|+|++|+|||||+..|+..+ ..-+|..|--..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~ 121 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR 121 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence 456799999999999999999998764 2356777744333
No 213
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.18 E-value=0.0026 Score=55.10 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=22.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++++++||+||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999888764
No 214
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.17 E-value=0.0029 Score=54.82 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..+++|+||+|||||||+..++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999854
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.14 E-value=0.0032 Score=56.68 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=23.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+..|+|.|++|||||++|..+++..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45688999999999999999998764
No 216
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.11 E-value=0.0029 Score=59.34 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++.+|+|+||+||||||+...||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999765
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.10 E-value=0.0037 Score=63.11 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEe
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIIN 62 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs 62 (327)
+...++|+||+|||||+|+..||..++...+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 46789999999999999999999998766443
No 218
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.09 E-value=0.0049 Score=60.50 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+..++|.||+|+|||+|+..++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999876
No 219
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.08 E-value=0.0014 Score=63.24 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeE
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEI 60 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ei 60 (327)
.+.|+|+|++||||||++..||+.++..+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 35699999999999999999999988766
No 220
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.07 E-value=0.0036 Score=58.67 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=24.6
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..++.+++|+||+||||||+...||..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999764
No 221
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.02 E-value=0.0029 Score=56.94 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=24.9
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+-.....+++|+||+|||||||...|+-.+
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334567899999999999999999998544
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.98 E-value=0.0044 Score=65.57 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
..+..|+|+||+|||||+|+..||..++..++..+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~ 271 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 456789999999999999999999999988776654
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.98 E-value=0.005 Score=60.75 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC---CC--eEEeCCcc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF---PA--EIINSDKM 66 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~---~~--eiIs~Ds~ 66 (327)
.++.+|+++|++||||||++..||..+ |. -++.+|..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 357899999999999999999998655 33 36778853
No 224
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.97 E-value=0.0036 Score=54.92 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..+++|+||+|||||||+..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45679999999999999999999974
No 225
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.97 E-value=0.0039 Score=54.76 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..+++|+||+|||||+|+..++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998764
No 226
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.96 E-value=0.0033 Score=60.17 Aligned_cols=27 Identities=37% Similarity=0.668 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
...+++|+||||||||||...|+..++
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 567999999999999999999998764
No 227
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.95 E-value=0.0053 Score=51.83 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
+.+.+|+||+|||||||...|.-.+++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 458999999999999999999887754
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.95 E-value=0.004 Score=58.15 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC----C--CeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF----P--AEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~----~--~eiIs~Ds 65 (327)
.++.+|+|+||+||||||++..||..+ | .-++.+|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 456799999999999999999998654 2 24666775
No 229
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.94 E-value=0.0039 Score=60.01 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++|+|||||||||+...|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999998754
No 230
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.93 E-value=0.0048 Score=58.42 Aligned_cols=39 Identities=26% Similarity=0.489 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK 70 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~ 70 (327)
...-++|+|++|+||||+|.+|.++ |..+|+-|...+++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEIRE 181 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEEEE
Confidence 4578999999999999999999886 88999988887765
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.93 E-value=0.0051 Score=61.76 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=29.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
++-++|+||+|||||+|+..+|...+..++..+.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 3459999999999999999999999877776554
No 232
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.93 E-value=0.0062 Score=57.54 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=28.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC---CCe--EEeCCc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF---PAE--IINSDK 65 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~---~~e--iIs~Ds 65 (327)
..++.+|+|+|++|+||||++..||..+ ++. ++.+|.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4567899999999999999999998765 333 455554
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.92 E-value=0.0042 Score=58.94 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++.+++|+||+||||||+...||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999754
No 234
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.91 E-value=0.0072 Score=57.53 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
...++|+||+|||||||+..|+..++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999998764
No 235
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.90 E-value=0.0042 Score=59.65 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++|+|||||||||+...|+..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445699999999999999999987654
No 236
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.87 E-value=0.0078 Score=53.66 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=30.3
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC----CCeEEeCCc
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF----PAEIINSDK 65 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~----~~eiIs~Ds 65 (327)
...+..+++++|..|+||||++..||..+ ..-+|+.|.
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34567899999999999999999999643 344777775
No 237
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.85 E-value=0.0054 Score=53.78 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+.++++++||+||||||.+..++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346799999999999999999999876
No 238
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=95.81 E-value=0.037 Score=52.08 Aligned_cols=111 Identities=12% Similarity=0.155 Sum_probs=69.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcc-cccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLD-IVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gld-I~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
..+.+|++-|.=|||||+....|.+.++. +|.. +.+.+|+.+|.. ||++.
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldp-----------rg~~V~~~~~Pt~eE~~---~~yl~--------------- 134 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNP-----------RSARVVALTKPTETERG---QWYFQ--------------- 134 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCT-----------TTEEEEECCSCCHHHHT---SCTTH---------------
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcc-----------cCCeEEEeCCcChHHHh---chHHH---------------
Confidence 35789999999999999999999999864 2222 345788877764 33221
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchH----HHHHHHcCCch-----------hh-----hcccceEEEEEeCCHHHHHHHhh
Q 020362 109 HASLAIESILSRDRLPIIAGGSSS----YIKALVNGDAA-----------EF-----QLRYECFFLWVDVSLPVLHSFVS 168 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~----Y~~all~~~~~-----------~~-----~~~~~~~~i~L~~~~e~L~~RL~ 168 (327)
+....+-++|++ +|+..|.+ | +....+... .| ......+.|||+.++++..+|+.
T Consensus 135 ---R~~~~LP~~G~I-vIfDRswYs~v~~-~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~ 209 (304)
T 3czq_A 135 ---RYVATFPTAGEF-VLFDRSWYNRAGV-EPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFH 209 (304)
T ss_dssp ---HHHTTCCCTTCE-EEEEECGGGGTTH-HHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHH
T ss_pred ---HHHHhcccCCeE-EEEECCcchHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHH
Confidence 112223356666 45444331 1 111111111 00 12346688999999999999998
Q ss_pred hhhhhh
Q 020362 169 ERVDRM 174 (327)
Q Consensus 169 ~Rv~~M 174 (327)
+|.+..
T Consensus 210 ~R~~dp 215 (304)
T 3czq_A 210 DRRHDP 215 (304)
T ss_dssp HHHHCT
T ss_pred HhhcCc
Confidence 886544
No 239
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.80 E-value=0.0084 Score=51.93 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC----CeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP----AEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~----~eiIs~D 64 (327)
.+.+.|+|+|++|||||||...|+..+. ..+|..|
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 3567899999999999999999987742 3455555
No 240
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.79 E-value=0.0038 Score=58.01 Aligned_cols=26 Identities=42% Similarity=0.560 Sum_probs=23.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.-++|.||+|||||++|..+++.++.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCcc
Confidence 34999999999999999999998864
No 241
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.79 E-value=0.0056 Score=58.93 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..++.+++|+||+||||||+...||..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4567899999999999999999999764
No 242
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.78 E-value=0.0042 Score=55.96 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=24.8
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-..+..+++|+||+|||||||...|+..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999999998654
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.78 E-value=0.0053 Score=60.26 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.+..+++|+|||||||||+...|+..++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999999987653
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.75 E-value=0.005 Score=57.61 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...++|.||+|||||.|+..+|..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998754
No 245
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.75 E-value=0.0061 Score=55.51 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.7
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
.+|.|+|+.||||||+|..|++++|..+++..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~ 33 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLA 33 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecC
Confidence 58999999999999999999999998887743
No 246
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.74 E-value=0.0079 Score=53.47 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=31.7
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhCC---CeEEe-CCccc
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRFP---AEIIN-SDKMQ 67 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~~---~eiIs-~Ds~q 67 (327)
+..++++|+|+|.+||||+++|..|.+.+| ..+++ +|.+.
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 445678999999999999999999988775 55666 55554
No 247
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.72 E-value=0.0049 Score=58.36 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYK 70 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~ 70 (327)
...-|+|+|++|+||||+|.+|.+ .|..+|+=|...+++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i~~ 184 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEIYR 184 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEEEE
Confidence 456799999999999999999986 488999988887765
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.71 E-value=0.0039 Score=55.63 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-.+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3466799999999999999999998544
No 249
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.69 E-value=0.0049 Score=55.62 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999999998654
No 250
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.69 E-value=0.006 Score=55.95 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|+|||||+..|+...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3556799999999999999999988654
No 251
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.68 E-value=0.0063 Score=56.90 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
+..++|.||+|+|||+++..+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998754
No 252
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.67 E-value=0.0049 Score=56.44 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=24.7
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-.....+++|+||+|||||||...|+-.+
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999999998654
No 253
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.67 E-value=0.0058 Score=56.19 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=28.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
++++|.||.|+|||+|+..+++..+.-+++++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 799999999999999999999998766666543
No 254
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.66 E-value=0.0072 Score=62.96 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=28.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCCeEEeCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPAEIINSD 64 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~D 64 (327)
..++++||||||||++|..||+.++..++..|
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~ 520 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEe
Confidence 36999999999999999999999988877655
No 255
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.64 E-value=0.0057 Score=55.33 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
... .+++|+||+|||||||..-|+-.+
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 355 899999999999999999999655
No 256
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.63 E-value=0.0065 Score=54.63 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++++|++|+||||++..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346799999999999999999998776
No 257
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.59 E-value=0.0048 Score=56.73 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4567899999999999999999998654
No 258
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.57 E-value=0.0048 Score=57.09 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999999998654
No 259
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.56 E-value=0.0071 Score=59.56 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~ 66 (327)
.+.+|+|+|++||||||++..||..+ ..-+|++|..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 45799999999999999999999865 3568888853
No 260
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.54 E-value=0.0059 Score=55.82 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4567799999999999999999998654
No 261
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.53 E-value=0.0053 Score=55.71 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567799999999999999999998654
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.51 E-value=0.0059 Score=54.65 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467799999999999999999998655
No 263
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.51 E-value=0.0064 Score=55.14 Aligned_cols=27 Identities=41% Similarity=0.455 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..+..+++|+||+|||||||...|+-.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456679999999999999999999864
No 264
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.51 E-value=0.0066 Score=55.33 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..+++|+||+|||||||+..++..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999864
No 265
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.49 E-value=0.0073 Score=55.39 Aligned_cols=27 Identities=41% Similarity=0.586 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.....+++|+||+|||||||..-|+-.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456679999999999999999999864
No 266
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.49 E-value=0.0081 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..+++|.|++|+|||+|+..+|..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998753
No 267
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.49 E-value=0.0059 Score=55.62 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||..-|+-.+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566799999999999999999998654
No 268
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.48 E-value=0.0086 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+.+.|+|+|.+|||||||...|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346788999999999999999999764
No 269
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.48 E-value=0.0063 Score=56.00 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566799999999999999999998654
No 270
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.47 E-value=0.0098 Score=56.65 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+...++.|+||+|||||||+..++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999765
No 271
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.47 E-value=0.0063 Score=55.88 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-.+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4567799999999999999999998654
No 272
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.46 E-value=0.0053 Score=57.76 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++..+++|+||+|||||||..-|+..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3456789999999999999999998655
No 273
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.45 E-value=0.0058 Score=55.08 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||..-|+-.+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566799999999999999999998654
No 274
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.45 E-value=0.0062 Score=53.93 Aligned_cols=25 Identities=36% Similarity=0.679 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...+++|+||+|||||||...|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998854
No 275
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.44 E-value=0.0057 Score=57.91 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
...+++|+||||||||||...|+..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456899999999999999999997763
No 276
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.43 E-value=0.0087 Score=60.12 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=24.6
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..++.+|+|+|++|||||||...|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4567899999999999999999998754
No 277
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.37 E-value=0.011 Score=62.63 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccch
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQV 68 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qv 68 (327)
..++-|++.||+|||||.+|..+|..++..+++.+.-.+
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 345678999999999999999999999999998776543
No 278
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.37 E-value=0.0072 Score=55.23 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||...|+-.+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566799999999999999999998654
No 279
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.36 E-value=0.0075 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+++|+||+|||||||...|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998765
No 280
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.35 E-value=0.0074 Score=55.30 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=24.6
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-.....+++|+||+|||||||..-|+-.+
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34567899999999999999999998654
No 281
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.35 E-value=0.0092 Score=55.93 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+-++++|+|+.|||||||...|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45799999999999999999999654
No 282
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.34 E-value=0.013 Score=54.54 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds~ 66 (327)
....|+|.|+||||||++|..++... ....||+..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 35568899999999999999999854 2345666544
No 283
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.32 E-value=0.0074 Score=56.26 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEcCCcccHHHHHHHHHHhC
Q 020362 35 VFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~ 56 (327)
++|+||+|+||||++..|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999953
No 284
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.31 E-value=0.006 Score=54.34 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456799999999999999999998654
No 285
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.30 E-value=0.013 Score=48.30 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.8
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..+...|+|+|++|+|||||...|..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667899999999999999999975
No 286
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.30 E-value=0.0077 Score=60.56 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.....++|+|||||||||+...|+..+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3456799999999999999999987763
No 287
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.27 E-value=0.0079 Score=55.75 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+.++|.||+|+|||+++..+++.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999998864
No 288
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.24 E-value=0.012 Score=50.63 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....|+|+|++|+|||+|...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445689999999999999999998754
No 289
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.24 E-value=0.0098 Score=54.71 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCCC--eEEeCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFPA--EIINSD 64 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~~--eiIs~D 64 (327)
++++|.||.|+|||+|+..+++..+. -++++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 69999999999999999999987643 355554
No 290
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.22 E-value=0.0076 Score=54.88 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
..+..+++|+||+|||||||...|+-.+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45667999999999999999999986543
No 291
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.20 E-value=0.0077 Score=55.76 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||..-|+-.+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3466799999999999999999998654
No 292
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.17 E-value=0.015 Score=53.89 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
++..-|+|.||+|||||.++..||..++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3345799999999999999999999753
No 293
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.16 E-value=0.0081 Score=54.73 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566799999999999999999998655
No 294
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.14 E-value=0.016 Score=60.37 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC----------CCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF----------PAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~----------~~eiIs~Ds 65 (327)
..+..++|+||+|||||+++..||+.+ +..+++.|.
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 356678999999999999999999886 556666553
No 295
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.14 E-value=0.013 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+.++|.||+|+|||+++..+++.++
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3599999999999999999998863
No 296
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.13 E-value=0.015 Score=58.41 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds 65 (327)
.++.+|+|+|++||||||++..||..+ ..-+|++|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 456799999999999999999999654 345788885
No 297
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.13 E-value=0.0091 Score=55.89 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.4
Q ss_pred EEEEcCCcccHHHHHHHHHHhCC
Q 020362 35 VFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 35 IvI~GpTGSGKStLA~~LA~~~~ 57 (327)
++++||+|||||+++..+|+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999863
No 298
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.11 E-value=0.011 Score=57.03 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||.+-|+-..
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4566799999999999999999999654
No 299
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.09 E-value=0.016 Score=53.96 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++.+++|+|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998754
No 300
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.06 E-value=0.011 Score=53.83 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++|.||+|+|||+++..+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 48999999999999999999885
No 301
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.05 E-value=0.022 Score=54.18 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDK 65 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds 65 (327)
...+|+|+|++|+|||||...|...+ ...|+..|-
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 36799999999999999999998643 234565553
No 302
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.00 E-value=0.012 Score=56.48 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||..-||--.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4567899999999999999999999654
No 303
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.98 E-value=0.013 Score=56.98 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||.+-|+--.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4566799999999999999999999655
No 304
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.98 E-value=0.017 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+...++.|.|++|||||+|+..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 356799999999999999999999763
No 305
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.97 E-value=0.016 Score=54.06 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+.+|+++|++|+||||++..||..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999665
No 306
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.97 E-value=0.016 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.0
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+.|+|+|++|+|||||...|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 307
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.96 E-value=0.015 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...|+|+|++|+|||||...|...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999853
No 308
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.96 E-value=0.013 Score=56.44 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||.+-||-..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4567899999999999999999999654
No 309
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.95 E-value=0.013 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEEEcCCcccHHHHHHHHHHhC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++|.||+|+|||+++..+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999885
No 310
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.93 E-value=0.022 Score=53.98 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+...++.|+|++|||||+|+..+|..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999976
No 311
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.93 E-value=0.011 Score=55.04 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+||+|||||||...|+-.+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3466799999999999999999998655
No 312
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.92 E-value=0.012 Score=56.47 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||.+-||-..
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4566799999999999999999999654
No 313
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.91 E-value=0.014 Score=56.50 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=24.8
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-.....+++|+||+|||||||.+-||-..
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34567899999999999999999999654
No 314
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.91 E-value=0.012 Score=56.50 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||..-||-..
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4456799999999999999999999654
No 315
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.90 E-value=0.0065 Score=64.29 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds 65 (327)
..+..+++.||+|||||+||..||..++..++..+.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 544 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 345678999999999999999999999877776553
No 316
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.90 E-value=0.018 Score=48.80 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+.--|+|+|++|+|||+|...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999988764
No 317
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.88 E-value=0.013 Score=58.72 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
..-|+|.||+|||||+||..||..++.
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 357899999999999999999998853
No 318
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.87 E-value=0.017 Score=48.13 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
+.+.+|+||+|||||+|..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999988887544
No 319
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.87 E-value=0.014 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...|+|+|++|+|||||...|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 320
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.87 E-value=0.014 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+..+++|.||+|||||+||..+|..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999976
No 321
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.85 E-value=0.017 Score=48.22 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+...|+|+|++|+|||||...|+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999853
No 322
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.84 E-value=0.016 Score=54.37 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCe
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAE 59 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~e 59 (327)
..+..+++.||+|+|||++|..+|+.+..+
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 345689999999999999999999987653
No 323
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.83 E-value=0.012 Score=56.51 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||..-||-..
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566799999999999999999999654
No 324
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.82 E-value=0.011 Score=50.58 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=22.7
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
.......|+|+|++|+|||||...|+.
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 345567899999999999999998864
No 325
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.80 E-value=0.015 Score=56.15 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=24.7
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
-..+..+++|+||+|||||||.+-|+--.
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34567899999999999999999998654
No 326
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.02 Score=48.12 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....|+|+|++|+|||||...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998653
No 327
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.75 E-value=0.014 Score=56.36 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||.+-||-..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4466799999999999999999999654
No 328
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.74 E-value=0.023 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.....|+|+|++|+|||||...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999754
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.74 E-value=0.022 Score=47.50 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
....|+|+|++|+|||||...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4467899999999999999999754
No 330
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.73 E-value=0.021 Score=56.15 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC---CC--eEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF---PA--EIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~---~~--eiIs~Ds~ 66 (327)
++.+|+|+|++||||||++..||..+ +. -++.+|-.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 57899999999999999999999765 33 46677753
No 331
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.73 E-value=0.015 Score=55.02 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCeEEEE--EcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFV--MGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI--~GpTGSGKStLA~~LA~~~ 56 (327)
..+..++| +||+|+|||+|+..+++.+
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 35678888 9999999999999998765
No 332
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.71 E-value=0.018 Score=56.73 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC------CCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF------PAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~------~~eiIs~Ds 65 (327)
.++++|+|+|++|+||||++..||..+ ..-+|.+|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 456899999999999999999998544 245788885
No 333
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.70 E-value=0.016 Score=56.39 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.....+++|+||+|||||||..-|+-.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 345679999999999999999999854
No 334
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.69 E-value=0.017 Score=55.41 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++..++.|.||+|||||||+..++...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998753
No 335
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.68 E-value=0.014 Score=53.57 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.. ..+++|+||+|||||||..-|+-.+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 7799999999999999999998553
No 336
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.68 E-value=0.018 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..|+|+|++|||||||...|+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 578999999999999999998653
No 337
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.61 E-value=0.022 Score=53.28 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+..+++|.|++|+|||+|+..+|..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999865
No 338
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.60 E-value=0.027 Score=53.21 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=29.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCCcc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF---P--AEIINSDKM 66 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~Ds~ 66 (327)
..+..+|+|+|++|+|||||...|+..+ + ..+++.|-.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 3567899999999999999999998653 3 346666653
No 339
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.60 E-value=0.027 Score=45.87 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+...|+|+|++|+|||+|...|...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999999653
No 340
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.60 E-value=0.019 Score=46.20 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHh
Q 020362 33 KVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..|+|+|++|+|||||...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 341
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.59 E-value=0.022 Score=50.99 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+.++.+++|++||||||.++.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 446799999999999999999998876
No 342
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.57 E-value=0.019 Score=46.59 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 343
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.56 E-value=0.018 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.1
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..++|+||+|+|||||...|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998654
No 344
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.53 E-value=0.018 Score=48.93 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..-|+|+|.+|+|||+|...+...+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 345679999999999999988776544
No 345
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.53 E-value=0.024 Score=46.55 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+..-|+|+|.+|+|||||...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999865
No 346
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.52 E-value=0.018 Score=61.12 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=26.0
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhC---CCeEEeCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRF---PAEIINSD 64 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~---~~eiIs~D 64 (327)
..++|+||||||||++|..|++.+ +..+|..|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 478999999999999999999987 44554433
No 347
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.51 E-value=0.025 Score=53.55 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..+..+++|+|++|||||||...|+..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999999998643
No 348
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.49 E-value=0.024 Score=48.44 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=22.7
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
|.....-|+|+|.+|+|||+|...|...
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhC
Confidence 4344567999999999999999999864
No 349
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.44 E-value=0.022 Score=52.95 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+...++.|.|++|||||+|+..+|..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999975
No 350
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.44 E-value=0.017 Score=48.63 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.4
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~ 54 (327)
-|+|+|++|+|||||...|+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 351
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.42 E-value=0.021 Score=54.46 Aligned_cols=25 Identities=20% Similarity=0.508 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+..++.|.|++|||||||+..++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999854
No 352
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.017 Score=57.32 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.....+++|+||+|||||||.+-|+-..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3466799999999999999999998654
No 353
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.34 E-value=0.028 Score=45.32 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=20.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998754
No 354
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.34 E-value=0.02 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+..++.|+||+|||||||+..|+-.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 35679999999999999999988743
No 355
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.33 E-value=0.03 Score=49.21 Aligned_cols=24 Identities=17% Similarity=0.512 Sum_probs=20.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+-+++|+|++|||||++|..++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 348899999999999999997544
No 356
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.30 E-value=0.023 Score=48.74 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=23.1
Q ss_pred ccCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 28 FRRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
|.....-|+|+|.+|+|||||...|...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3344568999999999999999999864
No 357
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.29 E-value=0.027 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+..-|+|+|.+|+|||+|...|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3457999999999999999999864
No 358
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.27 E-value=0.021 Score=48.07 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+..-|+|+|.+|+|||+|...|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998654
No 359
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.26 E-value=0.027 Score=47.05 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...|+|+|++|+|||||...|+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999864
No 360
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.23 E-value=0.03 Score=45.15 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999854
No 361
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.22 E-value=0.025 Score=47.42 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=21.3
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|.+|+|||||...|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 362
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.22 E-value=0.024 Score=57.75 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
....++|+||+|||||||+..|+..++
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999999874
No 363
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.22 E-value=0.027 Score=45.68 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=20.1
Q ss_pred eEEEEEcCCcccHHHHHHHHHHh
Q 020362 33 KVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.-|+|+|++|+|||||...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999754
No 364
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.20 E-value=0.025 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLA 53 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA 53 (327)
.+...|+|+|++|+|||||...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999998875
No 365
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.20 E-value=0.026 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHh
Q 020362 33 KVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.-|+|+|++|+|||+|...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999853
No 366
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.20 E-value=0.029 Score=46.09 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...-|+|+|++|+|||||...|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999754
No 367
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.17 E-value=0.028 Score=45.71 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEEcCCcccHHHHHHHHHHh
Q 020362 33 KVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.-|+|+|++|+|||||...|...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 368
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.15 E-value=0.027 Score=53.94 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..++.|.|++|||||+||..++..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999865
No 369
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.034 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+..-|+|+|.+|+|||+|...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999999864
No 370
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.10 E-value=0.03 Score=46.46 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999863
No 371
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.09 E-value=0.028 Score=45.83 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.1
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~ 54 (327)
-|+|+|++|+|||+|...|..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999974
No 372
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.05 E-value=0.038 Score=46.95 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=23.6
Q ss_pred ccccCCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 26 HFFRRKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 26 ~~~~~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..+..+..-|+|+|++|+|||+|...|..
T Consensus 23 ~~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 23 RIFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp GTTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HhccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34445567899999999999999999853
No 373
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.05 E-value=0.033 Score=45.60 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 457999999999999999999743
No 374
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.03 E-value=0.033 Score=54.69 Aligned_cols=26 Identities=19% Similarity=0.511 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+..+++|.|++|+|||+|+..+|..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999864
No 375
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.03 E-value=0.032 Score=45.31 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.0
Q ss_pred eEEEEEcCCcccHHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~ 54 (327)
.-|+|+|++|+|||||...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999985
No 376
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.02 E-value=0.029 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
....|+|+|.||+|||||...|...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4567999999999999999998754
No 377
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.99 E-value=0.03 Score=48.27 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.....|+|+|.+|+|||||...|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34568899999999999999998754
No 378
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.98 E-value=0.03 Score=45.32 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHh
Q 020362 33 KVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.-|+|+|.+|+|||||...|...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999753
No 379
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.98 E-value=0.032 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357899999999999999999854
No 380
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.95 E-value=0.032 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...+++|+||+|+|||||...|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45789999999999999999999 65
No 381
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.95 E-value=0.032 Score=45.84 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999754
No 382
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.94 E-value=0.033 Score=50.55 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+.++.+++|++||||||.++.++.++
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346899999999999999999998765
No 383
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.91 E-value=0.027 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999853
No 384
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.90 E-value=0.05 Score=49.18 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=26.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC---CC--eEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF---PA--EIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~---~~--eiIs~Ds 65 (327)
...|++.|++|+|||+++..+|..+ |. -++..|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4569999999999999999988654 43 3667775
No 385
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.89 E-value=0.028 Score=56.94 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++...++|+||+|||||||..-|+..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998654
No 386
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.89 E-value=0.033 Score=49.26 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=17.3
Q ss_pred CeEEEEEcCCcccHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDL 52 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~L 52 (327)
...++|+||||||||++...+
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHH
Confidence 568999999999999865544
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.88 E-value=0.032 Score=49.23 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.....|+|+|++|+|||||...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34568999999999999999999853
No 388
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.88 E-value=0.04 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 389
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.86 E-value=0.029 Score=45.57 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=18.8
Q ss_pred EEEEEcCCcccHHHHHHHHHH
Q 020362 34 VVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~ 54 (327)
-|+|+|++|+|||+|...|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998863
No 390
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.86 E-value=0.027 Score=57.13 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++...++|+||+|||||||..-|+..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456789999999999999999998665
No 391
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.85 E-value=0.037 Score=44.87 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCcccHHHHHHHHHHh
Q 020362 34 VVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~ 55 (327)
-|+|+|++|+|||+|...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999754
No 392
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.84 E-value=0.031 Score=45.77 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.9
Q ss_pred eEEEEEcCCcccHHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~ 54 (327)
.-|+|+|++|+|||+|...|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999974
No 393
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.83 E-value=0.042 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+..-|+|+|++|+|||+|...|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999999854
No 394
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.82 E-value=0.04 Score=46.79 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+..-|+|+|++|+|||+|...|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 44568999999999999999999754
No 395
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.80 E-value=0.031 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..-|+|+|++|+|||||...|..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999864
No 396
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.80 E-value=0.038 Score=46.37 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+..-|+|+|.+|+|||+|...|...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999999753
No 397
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.74 E-value=0.049 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.4
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999865
No 398
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.73 E-value=0.038 Score=46.85 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+...|+|+|++|+|||+|...|...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999863
No 399
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=93.73 E-value=0.021 Score=61.37 Aligned_cols=23 Identities=43% Similarity=0.787 Sum_probs=20.6
Q ss_pred cCCCeEEEEEcCCcccHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAID 51 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~ 51 (327)
.++.++++|+|++|||||+||-.
T Consensus 21 ip~~~l~v~tG~SGSGKSsLafd 43 (916)
T 3pih_A 21 IPKNRLVVITGVSGSGKSSLAMD 43 (916)
T ss_dssp EETTSEEEEEESTTSSSHHHHTT
T ss_pred cCCCcEEEEECCCCCcHHHHHHH
Confidence 56789999999999999999954
No 400
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.73 E-value=0.035 Score=46.03 Aligned_cols=24 Identities=42% Similarity=0.637 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999854
No 401
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.73 E-value=0.041 Score=45.83 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
.+...|+|+|++|+|||+|...|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4566899999999999999999874
No 402
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.72 E-value=0.025 Score=60.20 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAID 51 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~ 51 (327)
.++.++++|+|++||||||||.+
T Consensus 33 iP~~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHHTT
T ss_pred ecCCCEEEEECCCCCCHHHHHHH
Confidence 46789999999999999999954
No 403
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.70 E-value=0.032 Score=48.74 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.+.+.+|+||+|||||++..+|.-.+++
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3579999999999999999888766544
No 404
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.69 E-value=0.039 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+.+.+|+||+|||||||-..++-.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999998777643
No 405
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.69 E-value=0.051 Score=54.91 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=31.2
Q ss_pred cccCCCeEEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCCc
Q 020362 27 FFRRKDKVVFVMGATGTGKSRLAIDLATRF---P--AEIINSDK 65 (327)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~Ds 65 (327)
|.....+++++.|..|+||||+|..||..+ | .-+|++|-
T Consensus 3 ~~~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 3 FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp GGSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 344557899999999999999999998765 3 34889994
No 406
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.68 E-value=0.024 Score=61.17 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.5
Q ss_pred cCCCeEEEEEcCCcccHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAID 51 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~ 51 (327)
.++.+++||+|++|||||+||..
T Consensus 43 iP~~~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 43 LPRDALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp EESSSEEEEEESTTSSHHHHHTT
T ss_pred ccCCCEEEEECCCCCcHHHHHHH
Confidence 46789999999999999999954
No 407
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.67 E-value=0.04 Score=53.89 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+..+++|.|++|+|||+|+..+|..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999864
No 408
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.66 E-value=0.034 Score=53.13 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh---CCCeEEeCCccchh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR---FPAEIINSDKMQVY 69 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~---~~~eiIs~Ds~qvy 69 (327)
....++|+||||||||++...|+.. .+..++-.|.-.-|
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 4567899999999999999888764 36666666654433
No 409
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.63 E-value=0.048 Score=48.66 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
-++|+||||+|||.++..++...+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~ 134 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELST 134 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999988743
No 410
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.63 E-value=0.026 Score=57.44 Aligned_cols=28 Identities=25% Similarity=0.403 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++...++|+||+|||||||..-|+..+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3456799999999999999999998665
No 411
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.63 E-value=0.025 Score=60.88 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHH
Q 020362 29 RRKDKVVFVMGATGTGKSRLAID 51 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~ 51 (327)
.++.++++|+|++|||||+||-+
T Consensus 41 iP~~~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 41 IPRGKLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp EETTSEEEEEESTTSSHHHHHTT
T ss_pred ccCCcEEEEECCCCCCHHHHHHH
Confidence 46789999999999999999954
No 412
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.63 E-value=0.04 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|.+|+|||||...|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999864
No 413
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.57 E-value=0.036 Score=46.08 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEcCCcccHHHHHHHHHHh
Q 020362 34 VVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~ 55 (327)
-|+|+|++|+|||||...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999753
No 414
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.57 E-value=0.032 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...+++|+||+|||||||...|+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 45789999999999999999998654
No 415
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.57 E-value=0.045 Score=45.82 Aligned_cols=27 Identities=15% Similarity=0.436 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..+...|+|+|.+|+|||+|...|...
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 355678999999999999999999843
No 416
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.55 E-value=0.043 Score=45.24 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457899999999999999999854
No 417
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.50 E-value=0.042 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 418
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.48 E-value=0.049 Score=45.68 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.....|+|+|++|+|||+|...|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999998754
No 419
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.46 E-value=0.043 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...+++|+||+|+|||||...|+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 45689999999999999999998543
No 420
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.46 E-value=0.042 Score=45.61 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999754
No 421
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.45 E-value=0.045 Score=54.73 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
...++|+|+|+.|+|||+||.+++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3468999999999999999999853
No 422
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.41 E-value=0.041 Score=45.88 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+...|+|+|.+|+|||+|...|...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999854
No 423
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.38 E-value=0.027 Score=57.24 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++...++|+||+|||||||..-|+..+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456789999999999999999998665
No 424
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.38 E-value=0.044 Score=45.98 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
....-|+|+|.+|+|||+|...|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999864
No 425
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.37 E-value=0.046 Score=45.13 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999753
No 426
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.37 E-value=0.043 Score=52.75 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF---P--AEIINSD 64 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~D 64 (327)
++..++.|.|++|||||+||..++... + .-+|+++
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 356799999999999999999998653 2 3455554
No 427
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.37 E-value=0.17 Score=50.72 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCcc-cccCCCChhhhcCccceeccccCCCcccCHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLD-IVTNKVTEEECHGVPHHLLGIIEPNANFTATDFRN 108 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gld-I~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~ 108 (327)
..+.+|++-|.=||||++....|.+.++. +|.. +.+.+|+.+|+.. + | |.+
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p-----------rg~~V~a~~~Pt~~E~~~-~------------y----l~R 92 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDP-----------RLIEVQSFLRPSDEELER-P------------P----QWR 92 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCG-----------GGEEEEECSSCCHHHHTS-C------------T----THH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCc-----------cCCeEEEeCCCChhhccC-C------------h----hhh
Confidence 45789999999999999999999999864 2322 2346788888652 1 1 111
Q ss_pred HHHHHHHHHHhCCCCeEEEcCchHHHHHHHc---C-Cchh-----------h-----hcccceEEEEEeCCHHHHHHHhh
Q 020362 109 HASLAIESILSRDRLPIIAGGSSSYIKALVN---G-DAAE-----------F-----QLRYECFFLWVDVSLPVLHSFVS 168 (327)
Q Consensus 109 ~a~~~i~~i~~~gk~pIvvGGT~~Y~~all~---~-~~~~-----------~-----~~~~~~~~i~L~~~~e~L~~RL~ 168 (327)
-.+.+-++|.+ +|...|. |-+.+.. | ...+ | ...+..+.|||+.++++..+|+.
T Consensus 93 ----~~~~lP~~G~I-vIfdRSw-Ys~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~ 166 (500)
T 3czp_A 93 ----FWRRLPPKGRT-GIFFGNW-YSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLK 166 (500)
T ss_dssp ----HHHHCCCTTCE-EEEESCH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-
T ss_pred ----HHHhCCCCCeE-EEEeCch-hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHH
Confidence 22334556776 4555543 3333221 1 1111 1 12345789999999999999999
Q ss_pred hhhhhh
Q 020362 169 ERVDRM 174 (327)
Q Consensus 169 ~Rv~~M 174 (327)
+|.+..
T Consensus 167 ~R~~~p 172 (500)
T 3czp_A 167 ALEKDP 172 (500)
T ss_dssp ------
T ss_pred HHhcCC
Confidence 997654
No 428
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.32 E-value=0.049 Score=46.53 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
.+..-|+|+|++|+|||||...|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999863
No 429
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.32 E-value=0.038 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCCeE--EEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKV--VFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~l--IvI~GpTGSGKStLA~~LA~~ 55 (327)
....+ ++|+|++|+|||||...|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44556 999999999999999999854
No 430
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.31 E-value=0.054 Score=44.88 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...|+|+|++|+|||+|...|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999854
No 431
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.31 E-value=0.051 Score=46.53 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+...|+|+|++|+|||+|...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999864
No 432
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=93.30 E-value=0.032 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
.+...|+|-|+-||||||++..|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34579999999999999999999999864
No 433
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.29 E-value=0.027 Score=57.32 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
++...++|+||+|||||||...|+..+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456789999999999999999988665
No 434
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.29 E-value=0.049 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999999754
No 435
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.28 E-value=0.054 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999754
No 436
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.28 E-value=0.023 Score=57.60 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.++...++|+||+|||||||...|+..+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3456789999999999999999887654
No 437
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.27 E-value=0.047 Score=53.42 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=21.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..+++|+||+|+|||||...|+-.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 449999999999999999999864
No 438
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.24 E-value=0.061 Score=49.37 Aligned_cols=37 Identities=32% Similarity=0.372 Sum_probs=28.4
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCCc
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRF---P--AEIINSDK 65 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~Ds 65 (327)
..+.++|+|+|--|+||||+|..||..+ | .-+|.+|.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456788888999999999999998755 3 34788884
No 439
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.24 E-value=0.061 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+..-|+|+|++|+|||+|...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999754
No 440
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.24 E-value=0.052 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...-|+|+|++|+|||+|...|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999864
No 441
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.22 E-value=0.049 Score=45.82 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
++..-|+|+|++|+|||+|...|...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999999853
No 442
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.22 E-value=0.048 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=20.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999754
No 443
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.22 E-value=0.029 Score=57.31 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=25.8
Q ss_pred EEEEEcCCcccHHHHHHHHHHhCCCeEEeC
Q 020362 34 VVFVMGATGTGKSRLAIDLATRFPAEIINS 63 (327)
Q Consensus 34 lIvI~GpTGSGKStLA~~LA~~~~~eiIs~ 63 (327)
-|+++||+|||||+||..+|+.++..+...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~ 358 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTT 358 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecC
Confidence 689999999999999999999887655443
No 444
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.20 E-value=0.052 Score=45.17 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
..-|+|+|++|+|||+|...|...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 34789999999999999987776654
No 445
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.20 E-value=0.053 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
....|+|+|.+|+|||||...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999753
No 446
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.19 E-value=0.04 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.7
Q ss_pred CeEEEEEcCCcccHHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..-|+|+|.+|+|||+|...|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45799999999999999999984
No 447
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.18 E-value=0.061 Score=46.91 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
....|+|+|.+|+|||+|...|...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998643
No 448
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.16 E-value=0.058 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999754
No 449
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.12 E-value=0.055 Score=53.24 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++|.|++|+|||+|+..+|...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 346799999999999999999998653
No 450
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.09 E-value=0.05 Score=54.36 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.. .+++|+||+|||||||...|+-.+
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 44 899999999999999999998654
No 451
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.069 Score=44.75 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
...-|+|+|++|+|||||...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 345799999999999999999976
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.06 E-value=0.052 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999853
No 453
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.04 E-value=0.053 Score=54.65 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++|+||+|||||||..-|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998654
No 454
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.03 E-value=0.06 Score=45.55 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
....|+|+|++|+|||||...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999999764
No 455
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.02 E-value=0.061 Score=51.25 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+..+++|.|++|+|||+|+..+|..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999876
No 456
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.99 E-value=0.051 Score=44.81 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|.+|+|||+|...|...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 457
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.97 E-value=0.06 Score=50.62 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
.+.+.+|+||+|+|||+|..++.-
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988754
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.97 E-value=0.05 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
No 459
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.95 E-value=0.0099 Score=53.54 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.6
Q ss_pred eEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 33 KVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
.+++|+||+|||||||...|+-.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 5678999999999999999987653
No 460
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.92 E-value=0.055 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999754
No 461
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.92 E-value=0.065 Score=45.90 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+...|+|+|.+|+|||||...+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 44568999999999999999999853
No 462
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.059 Score=45.34 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
..-|+|+|++|+|||+|...|....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4578999999999999999998653
No 463
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.85 E-value=0.051 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLA 53 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA 53 (327)
++..-|+|+|++|+|||+|...|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999884
No 464
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.82 E-value=0.034 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+..+++|+||+|+|||||...|+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4579999999999999999999754
No 465
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.81 E-value=0.062 Score=46.40 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
+..-|+|+|.+|+|||+|...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 445799999999999999999974
No 466
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.81 E-value=0.058 Score=45.64 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.8
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999753
No 467
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=92.79 E-value=0.14 Score=47.88 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhCCCeEEeCCccchhcCccc-ccCCCChhhhcCccceeccccCCCcccCHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRFPAEIINSDKMQVYKGLDI-VTNKVTEEECHGVPHHLLGIIEPNANFTATDFRNH 109 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~~~eiIs~Ds~qvy~gldI-~Takp~~~E~~gvphhlid~~~~~~~~s~~~f~~~ 109 (327)
.+-+|++-|--|+||+.+...|.+.++. +|+.+ ...+|+.+|+. |+++-
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldP-----------Rg~~V~a~~~Pt~eE~~---~~ylw---------------- 123 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDP-----------QGVQLTAFKAPTDEEKS---HDFLW---------------- 123 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCG-----------GGEEEEECCSCCHHHHT---SCTTH----------------
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCc-----------CceEEEECCCCChhhhc---CCHHH----------------
Confidence 4678999999999999999999999864 22222 34578888764 22111
Q ss_pred HHHHHHHHHhCCCCeEEEcCchHHHHHHH---cCC-ch-h----------h-----hcccceEEEEEeCCHHHHHHHhhh
Q 020362 110 ASLAIESILSRDRLPIIAGGSSSYIKALV---NGD-AA-E----------F-----QLRYECFFLWVDVSLPVLHSFVSE 169 (327)
Q Consensus 110 a~~~i~~i~~~gk~pIvvGGT~~Y~~all---~~~-~~-~----------~-----~~~~~~~~i~L~~~~e~L~~RL~~ 169 (327)
+....+-++|++.|. .+|.+ -+.++ .|. .. + | ...+..+.|||+.+.++-.+|+.+
T Consensus 124 --R~~~~lP~~G~I~IF-dRSwY-~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~ 199 (289)
T 3rhf_A 124 --RIEKQVPAAGMVGVF-DRSQY-EDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIA 199 (289)
T ss_dssp --HHHTTCCCTTCEEEE-ESCGG-GGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHH
T ss_pred --HHHHhCCCCCeEEEE-eCchh-hhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHH
Confidence 122344566776444 44442 22222 222 00 1 1 123456789999999999999999
Q ss_pred hhhhhhhc
Q 020362 170 RVDRMVEL 177 (327)
Q Consensus 170 Rv~~Ml~~ 177 (327)
|.+....+
T Consensus 200 R~~dP~k~ 207 (289)
T 3rhf_A 200 RLDDPSKH 207 (289)
T ss_dssp HHHCGGGG
T ss_pred HhcCCccc
Confidence 98766543
No 468
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.79 E-value=0.064 Score=47.31 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=19.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..+.++.+|.||+||||||..+..+..
T Consensus 17 ~~~g~l~fiyG~MgsGKTt~Ll~~i~n 43 (195)
T 1w4r_A 17 KTRGQIQVILGPMFSGKSTELMRRVRR 43 (195)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHH
Confidence 345789999999999999666555443
No 469
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.78 E-value=0.053 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDL 52 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~L 52 (327)
++..+++|+||+|||||||+..+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 45679999999999999999984
No 470
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.78 E-value=0.063 Score=44.74 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999754
No 471
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.73 E-value=0.066 Score=45.48 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
+..-|+|+|.+|+|||||...|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 472
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.73 E-value=0.061 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.9
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999753
No 473
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.67 E-value=0.091 Score=49.80 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC-----CCeEEeCCc
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF-----PAEIINSDK 65 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~-----~~eiIs~Ds 65 (327)
+.+.++++.|..|+||||+|..||..+ ..-+|++|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456788999999999999999998764 345888886
No 474
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.66 E-value=0.05 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++|+||+|||||||...|+-.+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 475
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.65 E-value=0.1 Score=51.30 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=25.1
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
..+...+.|+||+|||||||...|+....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34567899999999999999999998874
No 476
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.64 E-value=0.06 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..-|+|+|.+|+|||+|...|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999864
No 477
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.62 E-value=0.069 Score=46.07 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.3
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||+|...|...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 478
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.61 E-value=0.074 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...|+|+|++|||||||...|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999754
No 479
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.57 E-value=0.064 Score=54.15 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++|+||.|||||||..-|+-.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345799999999999999999998654
No 480
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.56 E-value=0.074 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..++|+|+|+.|+||||||..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999995
No 481
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.56 E-value=0.078 Score=45.02 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
...-|+|+|++|+|||+|...|...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999853
No 482
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.56 E-value=0.055 Score=50.49 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.5
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
+.+.+|+|++|||||+|...|.-.+|
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHhC
Confidence 45999999999999999999986553
No 483
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.55 E-value=0.053 Score=50.37 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHH
Q 020362 33 KVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 33 ~lIvI~GpTGSGKStLA~~LA~ 54 (327)
.-|+|+|++|+|||||...|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3569999999999999999874
No 484
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.52 E-value=0.071 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHH
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..+.+.+|+|+||+|||+|-.+|.-
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999888765
No 485
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.51 E-value=0.057 Score=46.06 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.0
Q ss_pred CCeEEEEEcCCcccHHHHHHHHH
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLA 53 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA 53 (327)
...-|+|+|.+|+|||+|...|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999885
No 486
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.51 E-value=0.1 Score=48.36 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=29.2
Q ss_pred CCCeEEEEEcC-CcccHHHHHHHHHHhC---C--CeEEeCCccc
Q 020362 30 RKDKVVFVMGA-TGTGKSRLAIDLATRF---P--AEIINSDKMQ 67 (327)
Q Consensus 30 ~~~~lIvI~Gp-TGSGKStLA~~LA~~~---~--~eiIs~Ds~q 67 (327)
...++|+|+|+ .|+||||+|..||..+ | .-+|.+|-.+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~ 145 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRR 145 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 34678999987 6999999999998765 2 3478888643
No 487
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.49 E-value=0.064 Score=53.13 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++|.|++|+|||+|+..+|...
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 356799999999999999999998754
No 488
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.46 E-value=0.1 Score=49.06 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCCcc
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF---P--AEIINSDKM 66 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~Ds~ 66 (327)
.+.++++.|..|+||||+|..||..+ | .-+|++|-.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 45788999999999999999998765 2 348888853
No 489
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.45 E-value=0.07 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...++|.|++|||||+++..+++.+
T Consensus 45 ~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 45 KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999998765
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.42 E-value=0.072 Score=54.63 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++|+||+|||||||..-|+-.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 356799999999999999999998654
No 491
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.40 E-value=0.063 Score=53.60 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHh
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
.+..+++|.|++|||||||+..++..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999854
No 492
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.40 E-value=0.07 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|++|+|||||...|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999999764
No 493
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.39 E-value=0.076 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|.+|+|||+|...|...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 494
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.39 E-value=0.068 Score=45.55 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.3
Q ss_pred CeEEEEEcCCcccHHHHHHHHHH
Q 020362 32 DKVVFVMGATGTGKSRLAIDLAT 54 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~ 54 (327)
..-|+|+|++|+|||+|...|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45789999999999999999974
No 495
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.35 E-value=0.09 Score=49.16 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=28.3
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhC---C--CeEEeCCc
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRF---P--AEIINSDK 65 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~---~--~eiIs~Ds 65 (327)
+.++++.|..|+||||+|..||..+ | .-+|++|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5789999999999999999998654 3 35788886
No 496
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.34 E-value=0.054 Score=60.26 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=24.9
Q ss_pred cCCCeEEEEEcCCcccHHHHHHHHHHhCC
Q 020362 29 RRKDKVVFVMGATGTGKSRLAIDLATRFP 57 (327)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLA~~LA~~~~ 57 (327)
-++...++|+||||||||||...|...+.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34567899999999999999999987763
No 497
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=92.27 E-value=0.051 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.6
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHhCCC
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATRFPA 58 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~~~~ 58 (327)
+.+++|+|++|||||||...|.-.+++
T Consensus 60 ~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 60 GGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp SSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 339999999999999999999877765
No 498
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.27 E-value=0.086 Score=44.81 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.0
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHh
Q 020362 32 DKVVFVMGATGTGKSRLAIDLATR 55 (327)
Q Consensus 32 ~~lIvI~GpTGSGKStLA~~LA~~ 55 (327)
..-|+|+|.+|+|||+|...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999854
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.27 E-value=0.07 Score=53.76 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 30 RKDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
.+..+++|+||.|||||||...|+-.+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998654
No 500
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.24 E-value=0.071 Score=54.19 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHhC
Q 020362 31 KDKVVFVMGATGTGKSRLAIDLATRF 56 (327)
Q Consensus 31 ~~~lIvI~GpTGSGKStLA~~LA~~~ 56 (327)
...+++|.|++|||||+++..|+..+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999887643
Done!