BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020365
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 143/281 (50%), Gaps = 22/281 (7%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPI-EMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++ RFF+VY W+WP P+++C I E G LG VW+P++ D++H MPIITPAY MNS+
Sbjct: 302 IIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPIITPAYPSMNST 358
Query: 61 YKVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVA 120
Y VS TLQ+M +F G I +IE G+ W L E FF Y Y+++D +
Sbjct: 359 YNVSKSTLQLMKSEFVRGAEITR-----KIETGECTWKNLLEKCDFFTRYSFYIEIDCYS 413
Query: 121 ADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYI-------DPSKPCPNSAF 173
+ +D W+GW+ES+ R L +E T + PYP + +P + C ++F
Sbjct: 414 MNEEDSRKWEGWIESKLRFLISNLES-TPKMKFAVPYPKGFTNNLHKANNPDQIC--TSF 470
Query: 174 FWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNY---RVRREGRDIYFSYVCRRHLPSFV 230
F GLS T + D V F I ++ + + DI Y+ ++ LP+FV
Sbjct: 471 FMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFV 530
Query: 231 FPDGYKWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKK 271
+G + + +G+P K +S +S+ +L K
Sbjct: 531 KDEGPEEPVKTTKKRSSTGEPSATRKKLKSENSDNKLNSPK 571
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 122/246 (49%), Gaps = 17/246 (6%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 18 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 77
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS+ T VM E+F+ G I + EI L KAEWS LF+ FF+ Y++Y+ + A
Sbjct: 78 NVSVSTRAVMVEEFKQGLAITD-----EILLVKAEWSKLFDAPNFFQKYKHYILLLASAP 132
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GL 177
L W G VES+ R L +E++ + H P + PS+ F W GL
Sbjct: 133 TEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPSPSENSEKEEFRTMWVIGL 191
Query: 178 SRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRH----LPSFV 230
K++ S+ +D Q R N ++ I +V R+ LPS V
Sbjct: 192 VFKKMENSENLSVDLTYDIQSFTDTVYRQAINSKMFETEIKIAAMHVKRKQLHQLLPSHV 251
Query: 231 FPDGYK 236
P K
Sbjct: 252 LPKKKK 257
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 250 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 309
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS+ T VM E+F+ G I + EI LGKAEWS LF+ FF+ Y++Y+ + A
Sbjct: 310 NVSVSTRAVMIEEFKQGLAITD-----EILLGKAEWSKLFDAPNFFQKYKHYILLLASAP 364
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GL 177
L W G VES+ R L +E++ L H P + PS+ F W GL
Sbjct: 365 TEKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPRSFPAPSENMEKEEFRTMWVIGL 423
Query: 178 SRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL----PSFV 230
K++ S+ +D Q R N ++ I +V R+ L PS V
Sbjct: 424 VFKKMENSENLSVDLTYDIQSFTDTVDRQAINSKMFETEMKIAAMHVKRKQLHQLQPSHV 483
Query: 231 FPDGYK 236
P K
Sbjct: 484 SPKKKK 489
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 138/296 (46%), Gaps = 20/296 (6%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS+ T VM E+F+ G I + EI L KAEWS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITD-----EILLSKAEWSKLFEAPNFFQKYKHYIVLLASAP 382
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYPNKYIDPSKPCPNSAFFWGLS 178
L W G VES+ R L +E++ T + +P +P K + + GL
Sbjct: 383 TEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLV 442
Query: 179 RKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGY 235
K+ S+ +D Q R N ++ I +V R+ L +
Sbjct: 443 FKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL----- 497
Query: 236 KWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 291
PS ++ E VK+ S L ++ + P ++K + ++S
Sbjct: 498 ----PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNS 549
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 137 bits (346), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 139/298 (46%), Gaps = 24/298 (8%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS+ T VM E+F+ G I + EI L KAEWS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITD-----EILLSKAEWSKLFEAPNFFQKYKHYIVLLASAP 382
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFF---W--G 176
L W G VES+ R L +E++ + H P + P K P+ F W G
Sbjct: 383 TEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAP-KESPDREEFRTMWVIG 440
Query: 177 LSRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPD 233
L K+ S+ +D Q R N ++ I +V R+ L +
Sbjct: 441 LVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKRKQLHQLL--- 497
Query: 234 GYKWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 291
PS ++ E VK+ S L ++ + P ++K + ++S
Sbjct: 498 ------PSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNS 549
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 137/296 (46%), Gaps = 20/296 (6%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS+ T VM E+F+ G I + EI L KAEWS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITD-----EILLSKAEWSKLFEAPNFFQKYKHYIVLLASAP 382
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYPNKYIDPSKPCPNSAFFWGLS 178
L W G VES+ R L +E++ T + +P +P K + + GL
Sbjct: 383 TEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLV 442
Query: 179 RKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGY 235
K+ S+ +D Q R N ++ I +V R+ L +
Sbjct: 443 FKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL----- 497
Query: 236 KWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 291
P+ ++ E VK+ S L ++ + P + K + ++S
Sbjct: 498 ----PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNS 549
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 121/239 (50%), Gaps = 27/239 (11%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS T VM E+F+ G + + EI GK++WS L E FF+ Y +Y+ + A+
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTD-----EILQGKSDWSKLLEPPNFFQKYRHYIVLTASAS 381
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYP--------NKYIDPSKPCPN 170
++ L W G VES+ R L +E++ T + +P N Y+
Sbjct: 382 TEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNNYV-------- 433
Query: 171 SAFFWGLSRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 226
S +F G+ + V ++ +D Q R +N + +EG I ++V ++ L
Sbjct: 434 SMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQL 492
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 121/239 (50%), Gaps = 27/239 (11%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS T VM E+F+ G + + EI GK++WS L E FF+ Y +Y+ + A+
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTD-----EILQGKSDWSKLLEPPNFFQKYRHYIVLTASAS 381
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYP--------NKYIDPSKPCPN 170
++ L W G VES+ R L +E++ T + +P N Y+
Sbjct: 382 TEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKANNYV-------- 433
Query: 171 SAFFWGLSRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 226
S +F G+ + V ++ +D Q R +N + ++G I ++V ++ L
Sbjct: 434 SMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQL 492
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 132/291 (45%), Gaps = 22/291 (7%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS+ T VM E+F+ G I EI L KAEWS LFE FF+ Y++Y+ + A
Sbjct: 328 NVSVSTRMVMIEEFKQGLAITH-----EILLNKAEWSKLFEAPSFFQKYKHYIVLLASAP 382
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GL 177
L W G VES+ R L +E++ L H P + P + F W GL
Sbjct: 383 TEKQHLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKETADKEEFRTMWVIGL 441
Query: 178 SRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDG 234
K+ S+ +D Q R N ++ I ++ R+ L +
Sbjct: 442 VLKKPENSEILSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLRRKELHQLL---- 497
Query: 235 YKWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVK 285
P+ ++ E V++ S L E+ + P ++K
Sbjct: 498 -----PNHVLQKKETHLTESVRLTAVTDSSLLLSIDSENSMTAPSPTGTMK 543
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 118/233 (50%), Gaps = 15/233 (6%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS+ T VM E+F+ G I EI L KAEWS LFE FF+ Y++Y+ + A+
Sbjct: 328 NVSISTRMVMIEEFKQGLAITH-----EILLSKAEWSKLFEAPSFFQKYKHYIVLLASAS 382
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFF---W--G 176
L W G VES+ R L +E++ L H P + P K P+ F W G
Sbjct: 383 TEKQHLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAP-KENPDMEEFRTMWVIG 440
Query: 177 LSRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 226
L K+ S+ +D Q R N ++ G I ++ R+ L
Sbjct: 441 LGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEMGMKITAMHLRRKEL 493
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 94/157 (59%), Gaps = 7/157 (4%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
+V +FF +YT+W WP PV++ IE G L VW+PR P DR HRMP+ITPAY M +++
Sbjct: 254 IVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMPVITPAYPSMCATH 313
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
++ T +V+ + G+ I + EI GK WS LFE + FF Y+ YL V +
Sbjct: 314 NITSSTQKVILAELSRGSSIMQ-----EIHAGKKTWSDLFEKHSFFYKYKFYLCVVAASI 368
Query: 122 D-ADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPY 157
D A++ W G++ES+ RQL LK+E G+ HPY
Sbjct: 369 DSAEEHKKWSGFIESKLRQLVLKLEV-AEGVEIAHPY 404
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 7/168 (4%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++V++FFR+ QW WP P+++ PIE G L +W+P+ P D++HRMPIITPAY M ++
Sbjct: 253 VIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPIITPAYPSMCAT 312
Query: 61 YKVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVA 120
+ ++L T ++ + I + +I + WSALF+ + FF Y++YL + A
Sbjct: 313 HNITLSTQTIILREMVRAGEIAD-----QIMVKALPWSALFQKHDFFHRYKHYLTITAAA 367
Query: 121 ADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPC 168
A+ L W G VES+ R L ++E + + HP+ NK D C
Sbjct: 368 KTAEAQLKWAGLVESKLRHLVTRLEL-VDAIALAHPF-NKGFDKVYNC 413
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++++RFF + ++W WP PV++ PIE G L VW+P+ +DRSHRMP+ITPAY M ++
Sbjct: 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 313
Query: 61 YKVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVA 120
+ ++ T +V+ ++F G +I +I K W+ LFE FF Y+ YL++
Sbjct: 314 HNITESTKKVILQEFVRGVQITN-----DIFSNKKSWANLFEKNDFFFRYKFYLEITAYT 368
Query: 121 ADADDL-LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCP 169
+D+ L W G VES+ R L +K+E G+ HP+ K + S CP
Sbjct: 369 RGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPF-TKPFESSYCCP 416
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 11/164 (6%)
Query: 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
++V +FF +Y+QW WP PV++ IE G L VW+PR DR HRMP+ITPAY M ++
Sbjct: 253 VIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPVITPAYPSMCAT 312
Query: 61 YKVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVA 120
+ ++ T +V+ +FQ G + +I +GK WS L E + FF Y+ YL IVA
Sbjct: 313 HNITSSTQKVILSEFQRGIELMN-----DINVGKKSWSDLLERHDFFFRYKFYLC--IVA 365
Query: 121 ADAD---DLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKY 161
A + L + G VES+ R L K+E G+ HPY +
Sbjct: 366 ATRSTYAEHLKYSGMVESKLRLLVQKLEL-VEGIELAHPYVKSF 408
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 77/122 (63%), Gaps = 6/122 (4%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
LV +FF V+++W WPNPV++ E L VWDPR NP DR H MPIITPAY NS+Y
Sbjct: 265 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 324
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
VS+ T VM E+F+ G I + EI L KAEWS LF+ FF+ Y+ Y+ +++A
Sbjct: 325 NVSVSTRAVMVEEFKQGLAITD-----EILLLKAEWSKLFDAPNFFQKYK-YVFYNLLAM 378
Query: 122 DA 123
A
Sbjct: 379 FA 380
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 15/162 (9%)
Query: 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
L+ +FF+VY+ W W + P+ +G + N K + + I+TPA N+++
Sbjct: 233 LLEKFFQVYSSWDW----LRTPVMLGT------NDDFNDKKKEGVIQILTPASPSENAAF 282
Query: 62 KVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA 121
++ +L+++ + + G I F E G +W+ LF+ F Y +++ + ++
Sbjct: 283 SITKFSLEMIKRELKRGQEIVH---EFSSE-GVNDWAKLFKPRHLFCGYYIFIEFIVTSS 338
Query: 122 DADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYID 163
+ L T G ES L +K + +++ + PN ++D
Sbjct: 339 SLEGLTTTIGKFESGLVNL-MKGLSEIEEIIEANVIPNGFLD 379
>sp|Q12472|YD21B_YEAST Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-DR1 PE=1 SV=3
Length = 1770
Score = 32.7 bits (73), Expect = 3.9, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 242 RHFNEQSGKPCEDVKMCQSCSSERQLK------RKKEHEIKEVRPDKSVKQAFISSEVPQ 295
R N +S P ++ +C + + R +H + PDKS K S +
Sbjct: 1086 RSSNSESTTPIISIETKAACDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDD 1145
Query: 296 PVSPGMTTEDPTNNSEVMSSGGHLVSEKGES 326
P +T + PT+ S+V H+ S + S
Sbjct: 1146 LPLPDLTNKSPTDTSDVSKDIPHIHSRQTNS 1176
>sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-OR1 PE=3 SV=1
Length = 1770
Score = 32.3 bits (72), Expect = 4.6, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 242 RHFNEQSGKPCEDVKMCQSCSSERQLK------RKKEHEIKEVRPDKSVKQAFISSEVPQ 295
R N +S P ++ +C + + R +H + PDKS K S +
Sbjct: 1086 RSSNSESTTPIISIETKAACDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDD 1145
Query: 296 PVSPGMTTEDPTNNSEVMSSGGHLVSEKGES 326
P +T + PT+ S+V H+ S + S
Sbjct: 1146 LPLPDLTHQSPTDTSDVSKDIPHIHSRQTNS 1176
>sp|Q07791|YD23B_YEAST Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-DR3 PE=3 SV=1
Length = 1770
Score = 31.6 bits (70), Expect = 8.4, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 242 RHFNEQSGKPCEDVKMCQSCSSERQLK------RKKEHEIKEVRPDKSVKQAFISSEVPQ 295
R N +S P ++ C + + R +H + PDKS K S +
Sbjct: 1086 RSSNSESTTPIISIETKAVCDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDD 1145
Query: 296 PVSPGMTTEDPTNNSEVMSSGGHLVSEKGES 326
P +T + PT+ S+V H+ S + S
Sbjct: 1146 LPLPDLTNKSPTDTSDVSKDIPHIHSRQTNS 1176
>sp|C5DEP0|AIM34_LACTC Altered inheritance of mitochondria protein 34, mitochondrial
OS=Lachancea thermotolerans (strain ATCC 56472 / CBS
6340 / NRRL Y-8284) GN=AIM34 PE=3 SV=1
Length = 266
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 250 KPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKS---------VKQAFISSEVPQPVSPG 300
KP +DV+M ++E+ L+ ++ I + P S +++ EV V P
Sbjct: 125 KPVDDVRMPDIAATEKSLETPEQEYIVHITPLSSSADKKPVTRLEKELSVEEVSANVPPA 184
Query: 301 MTTED----------PTNNSEVMSSGGHLVSEKGESE 327
++T D PT+N EV+ L ++K SE
Sbjct: 185 VSTTDHDKVIFQVDAPTDNIEVVDEEAELDADKRASE 221
>sp|P44833|LPPB_HAEIN Outer membrane antigenic lipoprotein B OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=lppB PE=3
SV=1
Length = 405
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 263 SERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTTEDPTNNSEVMSSG---GHL 319
S Q+ + +IK V SVKQ +++ PV P +T N +++ S G G +
Sbjct: 182 SLGQVLKISNCDIKTVTTTVSVKQPAVTASTATPVKPAVTYTPGANGTQIGSDGTIIGPI 241
Query: 320 VSEKGES 326
SE G S
Sbjct: 242 KSEAGTS 248
>sp|P25384|YC21B_YEAST Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-C PE=1 SV=2
Length = 1770
Score = 31.2 bits (69), Expect = 10.0, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 242 RHFNEQSGKPCEDVKMCQSCSSERQLK------RKKEHEIKEVRPDKSVKQAFISSEVPQ 295
R N +S P ++ C + + R +H + PDKS K S +
Sbjct: 1086 RSSNSESTTPIISIETKAVCDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDD 1145
Query: 296 PVSPGMTTEDPTNNSEVMSSGGHLVSEKGES 326
P +T + PT+ S+V H+ S + S
Sbjct: 1146 LPLPDLTHQSPTDTSDVSKDIPHIHSRQTNS 1176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,780,294
Number of Sequences: 539616
Number of extensions: 5721393
Number of successful extensions: 11796
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11747
Number of HSP's gapped (non-prelim): 35
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)