Query 020365
Match_columns 327
No_of_seqs 153 out of 370
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:47:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 8.5E-61 2.9E-65 485.5 17.0 238 1-244 267-511 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 6.5E-57 2.2E-61 458.5 17.1 230 1-239 254-530 (530)
3 4fh3_A Poly(A) RNA polymerase 99.2 1.1E-11 3.8E-16 118.7 8.4 96 2-103 243-348 (349)
4 4e8f_A Poly(A) RNA polymerase 99.0 6.5E-10 2.2E-14 109.8 8.9 103 2-110 271-383 (405)
5 2ikf_A RNA uridylyl transferas 98.8 1.6E-09 5.6E-14 104.7 3.1 81 2-83 260-349 (353)
6 2b4v_A RNA editing complex pro 97.8 1.2E-05 4E-10 80.9 3.9 80 2-83 350-438 (468)
7 3nyb_A Poly(A) RNA polymerase 97.6 2.8E-05 9.7E-10 74.2 3.7 77 2-83 217-297 (323)
8 3hj4_A Minor editosome-associa 91.5 0.51 1.7E-05 46.2 8.2 53 45-104 328-380 (384)
9 3pq1_A Poly(A) RNA polymerase; 90.2 0.27 9.3E-06 49.2 5.1 49 2-83 388-436 (464)
10 2fly_A Proadrenomedullin N-20 8.4 1.1E+02 0.0038 18.5 0.7 18 123-140 7-24 (26)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=8.5e-61 Score=485.52 Aligned_cols=238 Identities=34% Similarity=0.542 Sum_probs=206.4
Q ss_pred ChhHHHHHhhccCCCCCCeeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020365 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR 80 (327)
Q Consensus 1 mLv~rFF~vys~W~Wp~PV~L~~i~~~~l~~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~eEf~Rg~~ 80 (327)
+||.+||.+|++|+|++||+|++++++.+++++|||+.|++|++|+||||||+||++|+|+|||+||+++|++||+||++
T Consensus 267 ~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~ 346 (514)
T 1q79_A 267 TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLA 346 (514)
T ss_dssp HHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhcCccchhhhhcCCccccccccEEEEEEEeCChhhhhhhhhhhhhHHHHHHHHhhhcCCCceeEcCCCCC
Q 020365 81 ICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNK 160 (327)
Q Consensus 81 i~~~~~~~~i~~~~~~W~~Lfep~~FF~~Yk~yL~I~v~a~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~ 160 (327)
+++ +|..++.+|++||++++||.+|+|||+|+|+|.+++++.+|.||||||||.|+.+||+. ..+..|||||+.
T Consensus 347 il~-----~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~-~~i~~a~~~P~~ 420 (514)
T 1q79_A 347 ITD-----EILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQS 420 (514)
T ss_dssp HHH-----HHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTS-TTEEEEEECSCC
T ss_pred HHH-----HHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccC-CCceeeecCccc
Confidence 999 99999999999999999999999999999999999999999999999999999999985 344559999999
Q ss_pred CCCCCC----CCCceeEEEeeeeccc---CCCCcCceechHHHHHHHHHHhccccccCCCeEEEEEEeccCCCCCCcCCC
Q 020365 161 YIDPSK----PCPNSAFFWGLSRKEV---GTSKECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPD 233 (327)
Q Consensus 161 f~d~~~----~~~~~~ffIGL~~~~~---~~~~~~~~~DL~~~v~~F~~~v~~~~~~~~~m~i~v~~Vkr~~LP~~V~~~ 233 (327)
|.+... ..+.++|||||+++.. ...+.+.++||+.++++|.+.|++|..|++||+|+|+|||+++||++||++
T Consensus 421 f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~~~ 500 (514)
T 1q79_A 421 FPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSH 500 (514)
T ss_dssp EECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC--
T ss_pred cCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCchhhcch
Confidence 976643 3567899999998762 222356789999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCc
Q 020365 234 GYKWHRPSRHF 244 (327)
Q Consensus 234 g~k~~~~~~~~ 244 (327)
|+++.|+.+..
T Consensus 501 ~~~~~~~~~~~ 511 (514)
T 1q79_A 501 VLQKKKKHSTE 511 (514)
T ss_dssp -----------
T ss_pred hccCCCCCCcc
Confidence 99999886653
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=6.5e-57 Score=458.52 Aligned_cols=230 Identities=30% Similarity=0.571 Sum_probs=209.6
Q ss_pred ChhHHHHHhhccCCCCCCeeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020365 1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR 80 (327)
Q Consensus 1 mLv~rFF~vys~W~Wp~PV~L~~i~~~~l~~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~eEf~Rg~~ 80 (327)
+||.+||.+|++|+|++||+|++++++.+++++|+|+.|.+|+.|+||||||+||++|+|+|||.||+++|++||+||++
T Consensus 254 ~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ 333 (530)
T 2hhp_A 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQ 333 (530)
T ss_dssp HHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhcCccchhhhhcCCccccccccEEEEEEEeC-ChhhhhhhhhhhhhHHHHHHHHhhhcCCCceeEcCCCC
Q 020365 81 ICEVRAYFEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA-DADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPN 159 (327)
Q Consensus 81 i~~~~~~~~i~~~~~~W~~Lfep~~FF~~Yk~yL~I~v~a~-~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~ 159 (327)
+++ +|..++.+|..||++++||.+|+|||+|++++. +++++..|.||||||||.|+.+||+ ..++..|||||+
T Consensus 334 ll~-----~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~a~~~p~ 407 (530)
T 2hhp_A 334 ITN-----DIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTK 407 (530)
T ss_dssp HHH-----HHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEEEECSS
T ss_pred HHH-----HHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCceeeecCCc
Confidence 999 998899999999999999999999999999998 9999999999999999999999998 456677999999
Q ss_pred CCCCCC-------------------------------------------CCCCceeEEEeeeecccCCCCcCceechHHH
Q 020365 160 KYIDPS-------------------------------------------KPCPNSAFFWGLSRKEVGTSKECQQFDFQGT 196 (327)
Q Consensus 160 ~f~d~~-------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~~~~DL~~~ 196 (327)
.|.+.. ...+.++|||||.++... .++++||+.+
T Consensus 408 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~~---~~~~~di~~~ 484 (530)
T 2hhp_A 408 PFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIEN---KKEKVDIHIP 484 (530)
T ss_dssp CEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCCCCCHHH
T ss_pred ccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCCC---CCceEeChhH
Confidence 984210 123458999999997532 3578999999
Q ss_pred HHHHHHHhccccc-cCCC-eE-EEEEEeccCCCCCCcCCCCcccCC
Q 020365 197 VKNFRRGIDNYRV-RREG-RD-IYFSYVCRRHLPSFVFPDGYKWHR 239 (327)
Q Consensus 197 v~~F~~~v~~~~~-~~~~-m~-i~v~~Vkr~~LP~~V~~~g~k~~~ 239 (327)
+++|++.|++|.. |+++ |+ |.|+|||++|||+|||++|++||+
T Consensus 485 ~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~~ 530 (530)
T 2hhp_A 485 CTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRPS 530 (530)
T ss_dssp HHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCCC
T ss_pred HHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCCC
Confidence 9999999999998 8876 89 999999999999999999998874
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=99.24 E-value=1.1e-11 Score=118.72 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=69.0
Q ss_pred hhHHHHHhhc-cCCCCCCeeccccccCC---------CCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHH
Q 020365 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGE---------LGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVM 71 (327)
Q Consensus 2 Lv~rFF~vys-~W~Wp~PV~L~~i~~~~---------l~~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI 71 (327)
|+..||+.|+ +|+|+++|+......+- .....|++..+..+..++|+|++|..|..|+++||+..++..|
T Consensus 243 LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I 322 (349)
T 4fh3_A 243 LLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRI 322 (349)
T ss_dssp HHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHH
Confidence 7889999998 69999998865332211 1234556666666677899999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccchhhhcCccchhhhhcC
Q 020365 72 TEQFQCGNRICEVRAYFEIELGKAEWSALFEH 103 (327)
Q Consensus 72 ~eEf~Rg~~i~~~~~~~~i~~~~~~W~~Lfep 103 (327)
++||+||+++++ +. .....|+.||+.
T Consensus 323 ~~eF~~A~~~L~-----~~-~~~~~~~~lfe~ 348 (349)
T 4fh3_A 323 RGEFMAASRLLN-----SR-SYPIPYDSLFEE 348 (349)
T ss_dssp HHHHHHHHHHHH-----CC-SSSCCGGGGGSC
T ss_pred HHHHHHHHHHHh-----Cc-ccCCCHHHHhhc
Confidence 999999999998 43 235689999986
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=99.00 E-value=6.5e-10 Score=109.76 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=77.6
Q ss_pred hhHHHHHhhc-cCCCCCCeeccccccCCCC--ccccCCCCC-------CCCCCCcceeeccCCCCCCcccccchhHHHHH
Q 020365 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGELG--FSVWDPRKN-------PKDRSHRMPIITPAYHCMNSSYKVSLGTLQVM 71 (327)
Q Consensus 2 Lv~rFF~vys-~W~Wp~PV~L~~i~~~~l~--~~vWdPr~n-------~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI 71 (327)
|+..||++|+ .|+|.+.|+-.....+.+. ...|+...+ ..++.+.|+|..|..|..|.+.+|+..++..|
T Consensus 271 LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I 350 (405)
T 4e8f_A 271 LLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRI 350 (405)
T ss_dssp HHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHH
Confidence 7889999999 8999998865331111122 146876521 12456899999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccchhhhcCccchhhhhcCCcccccc
Q 020365 72 TEQFQCGNRICEVRAYFEIELGKAEWSALFEHYPFFEAY 110 (327)
Q Consensus 72 ~eEf~Rg~~i~~~~~~~~i~~~~~~W~~Lfep~~FF~~Y 110 (327)
++||+||++++. +.. .+..|+.||+++++..+.
T Consensus 351 ~~eF~rA~~iL~-----~~~-~~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 351 RGEFMAASRLLN-----SRS-YPIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp HHHHHHHHHHHT-----CSS-SSCCGGGGGSCCCCC---
T ss_pred HHHHHHHHHHHh-----hhc-cCCCHHHHhCcCCCcccc
Confidence 999999999999 432 267899999999998754
No 5
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=98.79 E-value=1.6e-09 Score=104.70 Aligned_cols=81 Identities=12% Similarity=0.079 Sum_probs=64.2
Q ss_pred hhHHHHHhhc-cCCCCCCeeccccccCCC--CccccCCC------CCCCCCCCcceeeccCCCCCCcccccchhHHHHHH
Q 020365 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGEL--GFSVWDPR------KNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMT 72 (327)
Q Consensus 2 Lv~rFF~vys-~W~Wp~PV~L~~i~~~~l--~~~vWdPr------~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~ 72 (327)
|+..||++|+ +|+|.++|+-... .+.+ ....|+++ .++.++.+.|+|.+|..|..|.++||+.+++..|+
T Consensus 260 LL~~Ff~~Y~~~fd~~~~vIsi~~-~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~ 338 (353)
T 2ikf_A 260 QVLDFLHFFLHEFDSDKQVISLNR-PGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLR 338 (353)
T ss_dssp HHHHHHHHHHHTSCTTTEEECSSS-SSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhccccCcCceEEEcCC-CcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHH
Confidence 7899999999 8999999874311 1111 11358742 33345678999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 020365 73 EQFQCGNRICE 83 (327)
Q Consensus 73 eEf~Rg~~i~~ 83 (327)
+||+||+++|-
T Consensus 339 ~~f~~A~~~~~ 349 (353)
T 2ikf_A 339 RHLEKARDTAL 349 (353)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 6
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=97.77 E-value=1.2e-05 Score=80.89 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=61.3
Q ss_pred hhHHHHHhhc-cCCCCCCeeccccccCCC---CccccCCCCCC-CCCCCcceeeccCCC----CCCcccccchhHHHHHH
Q 020365 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGEL---GFSVWDPRKNP-KDRSHRMPIITPAYH----CMNSSYKVSLGTLQVMT 72 (327)
Q Consensus 2 Lv~rFF~vys-~W~Wp~PV~L~~i~~~~l---~~~vWdPr~n~-~Dr~hlMPIITPayP----~mNSt~NVs~STl~vI~ 72 (327)
|+..||+.|+ .|+|.+.|+-- ..+.. ....|+...|. ....+.|.|..|..| ..|.+.||+..+++.|+
T Consensus 350 LL~~FF~yYg~~Fd~~~~vISi--r~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~ 427 (468)
T 2b4v_A 350 LLHGFFIFYAHHFDYEREVVSL--NRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVK 427 (468)
T ss_dssp HHHHHHHHHHHSSCTTTEEBCS--SSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHccccCCCCcEEEe--cCCcceecccccccccccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHH
Confidence 7889999999 99999987622 11211 11347642221 112357999999999 99999999999999999
Q ss_pred HHHHHHHHhhh
Q 020365 73 EQFQCGNRICE 83 (327)
Q Consensus 73 eEf~Rg~~i~~ 83 (327)
+||.+|+++|+
T Consensus 428 ~eF~~A~~~L~ 438 (468)
T 2b4v_A 428 QEFLRAAQCME 438 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 7
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.61 E-value=2.8e-05 Score=74.23 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=57.9
Q ss_pred hhHHHHHhhc-cCCCCCCeeccccccCC---CCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHH
Q 020365 2 LVSRFFRVYT-QWRWPNPVMMCPIEMGE---LGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQC 77 (327)
Q Consensus 2 Lv~rFF~vys-~W~Wp~PV~L~~i~~~~---l~~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~eEf~R 77 (327)
|+..||++|+ +|+|++.++- +.+|. ..-..|..- ++..+.+.|+|..|..|..|.+.++ ..++.|++||.+
T Consensus 217 LL~~Ff~~Y~~~Fd~~~~~Is--v~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~ 291 (323)
T 3nyb_A 217 LLIEFFELYGKNFGYDDVALG--SSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAG 291 (323)
T ss_dssp HHHHHHHHHHHTCCTTTEEEE--ESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCcEEE--EecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHH
Confidence 7899999999 9999997663 22221 112357542 2234568999999999988888874 457899999999
Q ss_pred HHHhhh
Q 020365 78 GNRICE 83 (327)
Q Consensus 78 g~~i~~ 83 (327)
|++++.
T Consensus 292 A~~~L~ 297 (323)
T 3nyb_A 292 AFDLLT 297 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999988
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=91.48 E-value=0.51 Score=46.21 Aligned_cols=53 Identities=8% Similarity=0.143 Sum_probs=39.9
Q ss_pred CcceeeccCCCCCCcccccchhHHHHHHHHHHHHHHhhhcccchhhhcCccchhhhhcCC
Q 020365 45 HRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEVRAYFEIELGKAEWSALFEHY 104 (327)
Q Consensus 45 hlMPIITPayP~mNSt~NVs~STl~vI~eEf~Rg~~i~~~~~~~~i~~~~~~W~~Lfep~ 104 (327)
.+..|=- .--..|++..|+.+-...|+.||+||++|+. +- .+....+++|...
T Consensus 328 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~ 380 (384)
T 3hj4_A 328 SPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLI-----DK-ESELKFDEVFRES 380 (384)
T ss_dssp SSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHT-----TT-GGGCCHHHHTCCC
T ss_pred cceeeee-eccccccceecCccchhHHHHHHHHHHHHHh-----cc-cccccHHHHhhhc
Confidence 3444444 4458899999999999999999999999988 32 2345677777543
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.23 E-value=0.27 Score=49.25 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=36.8
Q ss_pred hhHHHHHhhccCCCCCCeeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHHh
Q 020365 2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRI 81 (327)
Q Consensus 2 Lv~rFF~vys~W~Wp~PV~L~~i~~~~l~~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~eEf~Rg~~i 81 (327)
|+.-||..|++++|-+-|+= | ..|.+.||+.+.+..++.|+.+|.-|
T Consensus 388 LL~gFF~yYa~FDf~~~vIs---------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~i 434 (464)
T 3pq1_A 388 LLKEFFEYFGNFAXXXXXXX---------------------------X------XXXXXXXVSQSQLQKFVDLARESAWI 434 (464)
T ss_dssp HHHHHHHHGGGCCCCCCCCC---------------------------C------C-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccc---------------------------c------ccccccccCHHHHHHHHHHHHHHHHH
Confidence 68899999999999876541 0 78999999999999999999999999
Q ss_pred hh
Q 020365 82 CE 83 (327)
Q Consensus 82 ~~ 83 (327)
|+
T Consensus 435 l~ 436 (464)
T 3pq1_A 435 LQ 436 (464)
T ss_dssp HH
T ss_pred Hh
Confidence 98
No 10
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=8.44 E-value=1.1e+02 Score=18.47 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=14.5
Q ss_pred hhhhhhhhhhhhhHHHHH
Q 020365 123 ADDLLTWKGWVESRFRQL 140 (327)
Q Consensus 123 ~e~~~~W~GwVESRlR~L 140 (327)
.+...+|..|+-||.+..
T Consensus 7 sefrKKwn~w~lsR~kR~ 24 (26)
T 2fly_A 7 SEFRKKWNKWALSRXXXX 24 (26)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 456789999999998753
Done!