Query 020366
Match_columns 327
No_of_seqs 177 out of 1258
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 1.5E-70 3.3E-75 537.6 35.1 327 1-327 213-539 (539)
2 PLN02991 oxidoreductase 100.0 6.2E-70 1.3E-74 531.3 35.3 324 1-325 213-536 (543)
3 PLN02354 copper ion binding / 100.0 6E-70 1.3E-74 534.2 34.6 325 1-326 218-545 (552)
4 PLN02792 oxidoreductase 100.0 1.6E-69 3.5E-74 528.9 35.3 325 1-326 204-530 (536)
5 PLN00044 multi-copper oxidase- 100.0 9.4E-69 2E-73 526.0 33.4 325 1-326 228-561 (596)
6 PLN02168 copper ion binding / 100.0 3.3E-68 7.1E-73 520.0 34.4 321 1-321 212-543 (545)
7 KOG1263 Multicopper oxidases [ 100.0 8.1E-64 1.8E-68 486.3 32.1 326 1-326 220-562 (563)
8 PLN02604 oxidoreductase 100.0 3E-63 6.4E-68 490.6 33.8 309 1-324 235-566 (566)
9 TIGR03389 laccase laccase, pla 100.0 5.6E-63 1.2E-67 487.3 34.3 311 1-319 198-539 (539)
10 TIGR03388 ascorbase L-ascorbat 100.0 1.4E-62 2.9E-67 484.4 32.7 304 1-320 214-539 (541)
11 PLN02191 L-ascorbate oxidase 100.0 1.7E-62 3.7E-67 484.6 33.2 307 1-324 237-566 (574)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.1E-59 4.5E-64 460.7 31.1 296 1-304 209-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.5E-42 3.2E-47 341.8 26.7 247 1-299 271-586 (587)
14 PRK10965 multicopper oxidase; 100.0 6.1E-41 1.3E-45 327.7 26.0 231 1-299 233-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.8E-40 3.9E-45 321.6 23.6 224 1-302 230-470 (471)
16 COG2132 SufI Putative multicop 100.0 5.6E-35 1.2E-39 283.6 24.3 237 1-300 210-449 (451)
17 PF07731 Cu-oxidase_2: Multico 100.0 4.4E-33 9.5E-38 228.2 11.0 108 194-301 29-136 (138)
18 PF00394 Cu-oxidase: Multicopp 99.9 9.2E-23 2E-27 171.0 8.9 84 1-84 71-158 (159)
19 TIGR02376 Cu_nitrite_red nitri 99.4 4.2E-13 9.2E-18 124.1 6.8 85 1-86 213-299 (311)
20 TIGR02376 Cu_nitrite_red nitri 99.2 3E-11 6.5E-16 111.8 10.0 82 200-302 60-147 (311)
21 PLN02604 oxidoreductase 99.1 5.6E-10 1.2E-14 111.4 11.3 88 201-302 57-145 (566)
22 PF07732 Cu-oxidase_3: Multico 98.8 2E-08 4.2E-13 79.6 9.0 89 199-301 26-115 (117)
23 PF00394 Cu-oxidase: Multicopp 98.5 3.4E-07 7.4E-12 76.6 8.6 90 199-299 60-155 (159)
24 TIGR03388 ascorbase L-ascorbat 98.5 3.2E-07 6.8E-12 91.4 9.5 88 201-302 34-122 (541)
25 TIGR03095 rusti_cyanin rusticy 98.2 1E-05 2.2E-10 66.6 9.2 87 200-299 53-147 (148)
26 PLN02191 L-ascorbate oxidase 98.1 1.1E-05 2.4E-10 80.8 8.9 81 200-300 55-142 (574)
27 TIGR02656 cyanin_plasto plasto 97.9 9.2E-05 2E-09 56.8 8.2 81 200-299 18-98 (99)
28 TIGR01480 copper_res_A copper- 97.9 6.1E-05 1.3E-09 75.5 9.0 85 200-300 77-161 (587)
29 TIGR03096 nitroso_cyanin nitro 97.7 0.00016 3.5E-09 58.1 8.1 58 201-285 63-120 (135)
30 TIGR03389 laccase laccase, pla 97.7 0.00011 2.4E-09 73.4 8.3 89 200-303 35-124 (539)
31 PLN02168 copper ion binding / 97.7 0.00018 3.8E-09 71.6 9.1 88 201-303 59-147 (545)
32 PLN02835 oxidoreductase 97.7 0.0002 4.4E-09 71.2 9.4 87 201-302 62-149 (539)
33 PRK10965 multicopper oxidase; 97.5 0.00041 8.8E-09 68.9 8.8 85 200-303 78-167 (523)
34 PLN00044 multi-copper oxidase- 97.4 0.00046 1E-08 69.2 8.3 87 201-302 62-149 (596)
35 PRK10883 FtsI repressor; Provi 97.4 0.0008 1.7E-08 66.0 9.8 85 200-303 78-167 (471)
36 PLN02792 oxidoreductase 97.4 0.00039 8.5E-09 69.1 7.5 87 201-302 49-136 (536)
37 PLN02354 copper ion binding / 97.4 0.00038 8.2E-09 69.5 6.8 87 201-302 60-147 (552)
38 TIGR03390 ascorbOXfungal L-asc 97.4 0.0023 5E-08 63.9 12.2 88 200-302 40-130 (538)
39 PF13473 Cupredoxin_1: Cupredo 97.3 0.0013 2.8E-08 50.8 7.6 62 200-290 36-97 (104)
40 PLN02991 oxidoreductase 97.0 0.0022 4.8E-08 63.8 7.9 87 201-302 61-148 (543)
41 PRK02888 nitrous-oxide reducta 96.9 0.0053 1.1E-07 61.3 9.5 74 200-300 556-633 (635)
42 PF00127 Copper-bind: Copper b 96.7 0.027 5.8E-07 43.0 9.9 81 200-300 18-99 (99)
43 PF07731 Cu-oxidase_2: Multico 96.6 0.013 2.9E-07 47.2 8.3 65 1-67 45-120 (138)
44 PRK02710 plastocyanin; Provisi 96.5 0.02 4.4E-07 45.3 8.4 70 201-299 49-118 (119)
45 TIGR02375 pseudoazurin pseudoa 96.3 0.025 5.4E-07 44.5 7.9 40 263-306 54-93 (116)
46 KOG1263 Multicopper oxidases [ 95.5 0.093 2E-06 52.5 9.6 88 201-303 61-149 (563)
47 TIGR02657 amicyanin amicyanin. 94.9 0.22 4.8E-06 36.6 8.1 71 200-299 12-82 (83)
48 COG2132 SufI Putative multicop 94.1 0.19 4.1E-06 49.2 8.0 86 201-302 66-151 (451)
49 TIGR03102 halo_cynanin halocya 94.0 0.62 1.3E-05 36.6 9.1 72 200-299 43-114 (115)
50 TIGR02866 CoxB cytochrome c ox 94.0 0.37 8E-06 41.8 8.6 76 199-302 117-193 (201)
51 PF14344 DUF4397: Domain of un 93.4 1.5 3.3E-05 34.4 10.7 47 1-53 3-50 (122)
52 COG4454 Uncharacterized copper 93.4 0.3 6.6E-06 40.0 6.5 92 201-299 65-156 (158)
53 PF00116 COX2: Cytochrome C ox 93.2 1.4 3.1E-05 34.8 10.1 73 199-299 46-119 (120)
54 COG3794 PetE Plastocyanin [Ene 91.4 1.5 3.3E-05 35.0 8.1 72 201-300 56-127 (128)
55 COG1622 CyoA Heme/copper-type 87.9 3.1 6.6E-05 37.3 8.2 78 199-304 137-215 (247)
56 TIGR01433 CyoA cytochrome o ub 84.3 4 8.7E-05 36.1 7.0 75 200-302 140-215 (226)
57 MTH00140 COX2 cytochrome c oxi 83.3 7.1 0.00015 34.5 8.2 76 199-302 140-216 (228)
58 PF12690 BsuPI: Intracellular 81.0 15 0.00033 26.8 8.0 63 2-65 6-82 (82)
59 PF06525 SoxE: Sulfocyanin (So 79.4 23 0.0005 30.4 9.5 95 201-302 88-188 (196)
60 MTH00047 COX2 cytochrome c oxi 79.2 21 0.00046 30.7 9.5 76 199-302 116-192 (194)
61 PTZ00047 cytochrome c oxidase 79.0 15 0.00032 30.6 8.0 76 199-302 73-149 (162)
62 TIGR01432 QOXA cytochrome aa3 77.0 12 0.00025 32.9 7.4 75 201-303 132-207 (217)
63 MTH00129 COX2 cytochrome c oxi 72.4 20 0.00043 31.8 7.7 76 199-302 140-216 (230)
64 TIGR03094 sulfo_cyanin sulfocy 71.5 62 0.0013 27.5 9.9 93 201-301 87-186 (195)
65 MTH00008 COX2 cytochrome c oxi 68.2 35 0.00075 30.2 8.3 76 199-302 140-216 (228)
66 MTH00098 COX2 cytochrome c oxi 67.2 38 0.00082 29.9 8.4 76 199-302 140-216 (227)
67 MTH00185 COX2 cytochrome c oxi 66.4 39 0.00085 29.9 8.3 76 199-302 140-216 (230)
68 TIGR03096 nitroso_cyanin nitro 64.2 19 0.00042 29.0 5.3 28 39-67 93-120 (135)
69 MTH00117 COX2 cytochrome c oxi 63.9 47 0.001 29.3 8.3 76 199-302 140-216 (227)
70 MTH00139 COX2 cytochrome c oxi 61.8 39 0.00084 29.8 7.4 77 198-302 139-216 (226)
71 MTH00023 COX2 cytochrome c oxi 61.6 56 0.0012 29.1 8.5 76 199-302 151-227 (240)
72 MTH00154 COX2 cytochrome c oxi 59.7 56 0.0012 28.8 8.0 76 199-302 140-216 (227)
73 MTH00038 COX2 cytochrome c oxi 56.9 74 0.0016 28.1 8.4 76 199-302 140-216 (229)
74 PF12690 BsuPI: Intracellular 55.7 17 0.00036 26.6 3.4 15 39-53 17-31 (82)
75 PRK10525 cytochrome o ubiquino 55.2 48 0.001 30.9 7.1 73 200-300 152-225 (315)
76 PF07705 CARDB: CARDB; InterP 54.0 83 0.0018 22.9 7.8 40 26-68 43-84 (101)
77 PF14734 DUF4469: Domain of un 53.3 42 0.00092 25.7 5.4 61 10-70 17-88 (102)
78 MTH00076 COX2 cytochrome c oxi 53.2 78 0.0017 27.9 7.9 76 199-302 140-216 (228)
79 MTH00080 COX2 cytochrome c oxi 52.2 86 0.0019 27.8 8.0 76 199-302 143-219 (231)
80 MTH00027 COX2 cytochrome c oxi 51.4 77 0.0017 28.7 7.6 76 199-302 174-250 (262)
81 MTH00051 COX2 cytochrome c oxi 50.5 1E+02 0.0022 27.4 8.2 77 198-302 143-220 (234)
82 cd01272 FE65_N Fe65 Phosphotyr 50.3 41 0.00089 26.9 4.9 40 219-286 74-113 (138)
83 PF11614 FixG_C: IG-like fold 49.6 46 0.00099 25.8 5.3 46 1-55 36-83 (118)
84 MTH00168 COX2 cytochrome c oxi 47.6 1.1E+02 0.0023 27.0 7.9 77 198-302 139-216 (225)
85 PF13473 Cupredoxin_1: Cupredo 47.3 50 0.0011 24.9 5.1 27 39-66 67-93 (104)
86 PF03459 TOBE: TOBE domain; I 43.9 18 0.00039 24.5 1.9 46 4-55 14-60 (64)
87 PF09394 Inhibitor_I42: Chagas 40.7 1.4E+02 0.003 21.6 7.4 79 202-294 2-82 (92)
88 smart00758 PA14 domain in bact 35.9 2.1E+02 0.0046 22.3 8.4 19 38-56 94-112 (136)
89 COG4263 NosZ Nitrous oxide red 35.9 32 0.0007 33.5 2.8 26 259-284 594-619 (637)
90 PF02767 DNA_pol3_beta_2: DNA 35.0 1.6E+02 0.0034 22.6 6.3 45 10-55 27-71 (116)
91 PF10989 DUF2808: Protein of u 33.4 55 0.0012 26.6 3.5 25 261-285 99-127 (146)
92 PF07691 PA14: PA14 domain; I 33.3 1.6E+02 0.0035 23.1 6.3 23 34-56 98-120 (145)
93 TIGR00638 Mop molybdenum-pteri 31.1 65 0.0014 21.9 3.2 19 37-55 44-62 (69)
94 TIGR02745 ccoG_rdxA_fixG cytoc 30.6 1.2E+02 0.0027 29.5 6.0 47 1-55 351-398 (434)
95 PF14874 PapD-like: Flagellar- 29.7 2.3E+02 0.005 20.9 7.6 56 2-65 26-84 (102)
96 PF05938 Self-incomp_S1: Plant 28.5 1.6E+02 0.0034 22.4 5.2 39 258-299 28-68 (110)
97 PF06775 Seipin: Putative adip 26.8 1.3E+02 0.0028 25.8 4.9 30 39-68 50-86 (199)
98 PRK06944 sulfur carrier protei 26.6 51 0.0011 22.4 1.9 29 23-51 31-59 (65)
99 cd00305 Cu-Zn_Superoxide_Dismu 26.4 93 0.002 25.2 3.7 24 205-228 25-48 (144)
100 TIGR01683 thiS thiamine biosyn 24.5 69 0.0015 21.8 2.3 32 21-52 28-59 (64)
101 PRK05659 sulfur carrier protei 24.4 68 0.0015 21.9 2.2 31 21-51 30-60 (66)
102 PF14392 zf-CCHC_4: Zinc knuck 23.8 1.2E+02 0.0025 19.6 3.1 41 250-290 3-44 (49)
103 PRK06083 sulfur carrier protei 22.8 62 0.0013 23.8 1.8 30 22-51 49-78 (84)
104 PF07228 SpoIIE: Stage II spor 22.7 1.4E+02 0.0031 24.6 4.4 29 2-30 76-104 (193)
105 PRK10290 superoxide dismutase; 20.6 1.3E+02 0.0028 25.4 3.6 90 204-304 47-151 (173)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.5e-70 Score=537.55 Aligned_cols=327 Identities=85% Similarity=1.361 Sum_probs=249.1
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccCCCceeEEEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAIL 80 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~~~~~~~ail 80 (327)
||||||+|+.+.+.|+||||+|+|||+||++++|+.++.|.|++||||||||++++++|+||||+...+.....+..|||
T Consensus 213 RlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail 292 (539)
T PLN02835 213 MFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVL 292 (539)
T ss_pred EEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEE
Confidence 89999999999999999999999999999999999999999999999999999998889999999764433446789999
Q ss_pred EecCCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccccCCeEEEEEcCcc
Q 020366 81 HYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGIS 160 (327)
Q Consensus 81 ~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~~ 160 (327)
+|.++..+.+.++|..|..+..+..+.+....+.+.+....+.|...+.......++++.+...+...+|...|+|||++
T Consensus 293 ~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s 372 (539)
T PLN02835 293 HYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVS 372 (539)
T ss_pred EECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcc
Confidence 99876433333344323211111111111122223332222332211111112335565554322223466789999999
Q ss_pred CcCCCCccccccccCCCCccccCCCCCCCCCCCCcceeeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCC
Q 020366 161 YVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQW 240 (327)
Q Consensus 161 ~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~ 240 (327)
|..|.+|+|...+.+.+++|+.+.....+.+...+.+++++.++.|++|||+|+|.+...||||||||+||||++|.|.|
T Consensus 373 ~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~ 452 (539)
T PLN02835 373 YVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQW 452 (539)
T ss_pred cCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCC
Confidence 99999999877666667777754322223333355678899999999999999999989999999999999999999999
Q ss_pred CccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEEEcCcccccccCCCCCchhhcc
Q 020366 241 AAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCG 320 (327)
Q Consensus 241 ~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~~~~~~~~~~~~~P~~~~~C~ 320 (327)
+......+|+.||++|||+.|+++||++|||+|||||+|+|||||++|+.+||+++|.|.++.+...+..++|+++++||
T Consensus 453 ~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg 532 (539)
T PLN02835 453 TPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCG 532 (539)
T ss_pred CcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccc
Confidence 76555567999999999999999999999999999999999999999999999999999977665545678999999999
Q ss_pred ccCCCCC
Q 020366 321 KAVGHHP 327 (327)
Q Consensus 321 ~~~~~~~ 327 (327)
.-++..|
T Consensus 533 ~~~~~~~ 539 (539)
T PLN02835 533 KAIGRHP 539 (539)
T ss_pred cCccCCC
Confidence 8877654
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=6.2e-70 Score=531.28 Aligned_cols=324 Identities=61% Similarity=1.044 Sum_probs=247.9
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccCCCceeEEEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAIL 80 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~~~~~~~ail 80 (327)
||||||+|+.+.++|+||||+|+|||+||.+++|+.++.|.|++||||||||+++|+.++||||+...+.....++.|||
T Consensus 213 RlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl 292 (543)
T PLN02991 213 RLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSKILITTGVL 292 (543)
T ss_pred EEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCCCcceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999889999999875544446789999
Q ss_pred EecCCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccccCCeEEEEEcCcc
Q 020366 81 HYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGIS 160 (327)
Q Consensus 81 ~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~~ 160 (327)
+|+++..+.+.+.|..|. +..++.+.....+..|.+....+.|...+.......++++.+....+..+|..+|+|||++
T Consensus 293 ~Y~g~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s 371 (543)
T PLN02991 293 HYSNSAGPVSGPIPDGPI-QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSAS 371 (543)
T ss_pred EeCCCCCCCCCCCCCCCc-cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeecccccCceEEEEECCCc
Confidence 999864322223333332 2222222111122344443333334322211112344444444322222456789999999
Q ss_pred CcCCCCccccccccCCCCccccCCCCCCCCCCCCcceeeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCC
Q 020366 161 YVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQW 240 (327)
Q Consensus 161 ~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~ 240 (327)
|..|.+|+|...+.+..|+|+.+.....|.+......++++.++.|++|||+|+|.+...||||||||+||||++|.|.|
T Consensus 372 ~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f 451 (543)
T PLN02991 372 FYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKW 451 (543)
T ss_pred cCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCC
Confidence 99999999987776677887654222223222333456788999999999999999889999999999999999999999
Q ss_pred CccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEEEcCcccccccCCCCCchhhcc
Q 020366 241 AAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCG 320 (327)
Q Consensus 241 ~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~~~~~~~~~~~~~P~~~~~C~ 320 (327)
+..+...||+.||++|||+.||++||++|||+|||||+|+|||||..|+.+||++++.|.++.+...+..++|++.++||
T Consensus 452 ~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg 531 (543)
T PLN02991 452 SAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCG 531 (543)
T ss_pred CcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccc
Confidence 87655679999999999999999999999999999999999999988999999999988877666555688999999998
Q ss_pred ccCCC
Q 020366 321 KAVGH 325 (327)
Q Consensus 321 ~~~~~ 325 (327)
.-++.
T Consensus 532 ~~~~~ 536 (543)
T PLN02991 532 RATGH 536 (543)
T ss_pred cCCCC
Confidence 76664
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=6e-70 Score=534.17 Aligned_cols=325 Identities=57% Similarity=1.014 Sum_probs=246.6
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccCCCceeEEEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAIL 80 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~~~~~~~ail 80 (327)
||||||+|+...+.|+||||+|+|||+||++++|..++.|.|++||||||||++++++|+|||++...+........|||
T Consensus 218 RlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail 297 (552)
T PLN02354 218 RYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGII 297 (552)
T ss_pred EEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999889999999865444456789999
Q ss_pred EecCCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccccCCeEEEEEcCcc
Q 020366 81 HYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGIS 160 (327)
Q Consensus 81 ~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~~ 160 (327)
+|.++..+.+...|..|. +..+..+.+.++..++.+....+.|...........++++.+...+...+|..+|+|||++
T Consensus 298 ~Y~g~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s 376 (552)
T PLN02354 298 RYEGGKGPASPELPEAPV-GWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVS 376 (552)
T ss_pred EECCCCCCCCCCCCCCCc-ccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCcc
Confidence 998765322222332221 1112223333333334433222333221111112345555554322223456789999999
Q ss_pred CcCCCCccccccccCC-CCccccCC-CCCCCC-CCCCcceeeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEecc
Q 020366 161 YVNSDTPLKLADYFNI-PGIFSVNS-IQSVPS-GGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGS 237 (327)
Q Consensus 161 ~~~~~~P~l~~~~~~~-~~~~~~~~-~~~~p~-~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~ 237 (327)
|..|++|+|.+.+.++ .|.++.+. ....|. ....+.+++++.++.|++|||+|+|.+...||||||||+||||++|.
T Consensus 377 ~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~ 456 (552)
T PLN02354 377 HVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEP 456 (552)
T ss_pred CCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecC
Confidence 9999999987765433 35554321 111121 11234467889999999999999999888999999999999999999
Q ss_pred CCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEEEcCcccccccCCCCCchh
Q 020366 238 GQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNIL 317 (327)
Q Consensus 238 G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~~~~~~~~~~~~~P~~~~ 317 (327)
|.|+.+....+|+.||++|||+.||++||++|||+|||||+|+|||||..|+++||+++++|.++.+.+++..++|++.+
T Consensus 457 G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~ 536 (552)
T PLN02354 457 GTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENAL 536 (552)
T ss_pred CCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccc
Confidence 99987655678999999999999999999999999999999999999988999999999999988877765667999999
Q ss_pred hccccCCCC
Q 020366 318 VCGKAVGHH 326 (327)
Q Consensus 318 ~C~~~~~~~ 326 (327)
.|++.++++
T Consensus 537 ~C~~~~~~~ 545 (552)
T PLN02354 537 LCGKVKGLP 545 (552)
T ss_pred ccccccCCC
Confidence 999888664
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.6e-69 Score=528.86 Aligned_cols=325 Identities=54% Similarity=0.976 Sum_probs=249.0
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccCCCceeEEEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAIL 80 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~~~~~~~ail 80 (327)
||||||+|+.+.+.|+||||+|+|||+||++++|..+++|.|++||||||||++++++|+|||++...+.+....+.|||
T Consensus 204 RlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail 283 (536)
T PLN02792 204 RFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTL 283 (536)
T ss_pred EEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCCCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999889999999876544446788999
Q ss_pred EecCCCCCCCCCCCCCC-CCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccccCCeEEEEEcCc
Q 020366 81 HYTNSHSPASGPLPTGP-TYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGI 159 (327)
Q Consensus 81 ~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~ 159 (327)
+|+++....+ ..|..| .++..++.+....++..+.+..+.+.|+....+.....++++.+...+....+...|+|||+
T Consensus 284 ~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~ 362 (536)
T PLN02792 284 HYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGV 362 (536)
T ss_pred EECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCc
Confidence 9987643211 112222 13333332221222233443223344543322222234455544432222345678999999
Q ss_pred cCcCCCCccccccccCCCCccccCCCCCCCCC-CCCcceeeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccC
Q 020366 160 SYVNSDTPLKLADYFNIPGIFSVNSIQSVPSG-GASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSG 238 (327)
Q Consensus 160 ~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G 238 (327)
+|..|++|+|...++++.|+++.+...+.|.. ......++++.++.|++|||||+|.+...||||||||+||||++|.|
T Consensus 363 s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G 442 (536)
T PLN02792 363 SFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKG 442 (536)
T ss_pred ccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCC
Confidence 99999999998776666677754322222221 12234578899999999999999988889999999999999999999
Q ss_pred CCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEEEcCcccccccCCCCCchhh
Q 020366 239 QWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILV 318 (327)
Q Consensus 239 ~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~~~~~~~~~~~~~P~~~~~ 318 (327)
.|+......||+.||++|||+.|+++||++|||+|||||+|+||||+..|+.+||+++|.|.++.+...+..++|++.+.
T Consensus 443 ~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~ 522 (536)
T PLN02792 443 IWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALL 522 (536)
T ss_pred CCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCc
Confidence 99876666899999999999999999999999999999999999999999999999999998776655556889999999
Q ss_pred ccccCCCC
Q 020366 319 CGKAVGHH 326 (327)
Q Consensus 319 C~~~~~~~ 326 (327)
||..++.+
T Consensus 523 Cg~~~~~~ 530 (536)
T PLN02792 523 CGRASNKN 530 (536)
T ss_pred cccccCCC
Confidence 98776643
No 5
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=9.4e-69 Score=526.02 Aligned_cols=325 Identities=49% Similarity=0.845 Sum_probs=242.7
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCC-ceEEEEEeccc----CCCce
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPK-DYYIVASTRFT----KNVLT 75 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~-~y~ir~~~~~~----~~~~~ 75 (327)
||||||+|+.+.+.|+||||+|+|||+||.+++|+.+++|.|++||||||||+++|+++ +||||+...++ .+...
T Consensus 228 RlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~ 307 (596)
T PLN00044 228 RFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLT 307 (596)
T ss_pred EEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcc
Confidence 89999999999999999999999999999999999999999999999999999999754 89999875322 24467
Q ss_pred eEEEEEecCCCCCCCCCCCCCC--CCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEecc-ccccCCeE
Q 020366 76 ATAILHYTNSHSPASGPLPTGP--TYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANS-APLINGKL 152 (327)
Q Consensus 76 ~~ail~y~~~~~~~~~~~p~~p--~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~g~~ 152 (327)
+.|||+|.++..+.+.++|..| .+++.++.++...+...+.+....+.|+....+......+.+.+... .....|..
T Consensus 308 ~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 387 (596)
T PLN00044 308 GVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKL 387 (596)
T ss_pred eeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeE
Confidence 8899999876432222234333 22333222222233222222112233332211111111122211110 00112567
Q ss_pred EEEEcCccCcCCCCccccccccCCCCccccCCCCCCCCCCCCcceeeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEE
Q 020366 153 RYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWV 232 (327)
Q Consensus 153 ~~~iN~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~V 232 (327)
+|+|||++|..|++|+|...+.++.|+|+.+.....| .......++++.+++|++|||+|+|.....||||||||+|||
T Consensus 388 ~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp-~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~V 466 (596)
T PLN00044 388 RATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPM-NRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFV 466 (596)
T ss_pred EEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCC-ccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEE
Confidence 8999999999999999987777777888755432222 222334678899999999999999987789999999999999
Q ss_pred EEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEEEcCccc-ccccCC
Q 020366 233 VGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHS-LANEYD 311 (327)
Q Consensus 233 l~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~~~~~~-~~~~~~ 311 (327)
|++|.|.|+...+..||+.||++|||+.||++||++|||+|||||+|+||||++.|+++||+++|.|.++.+. ..+..+
T Consensus 467 vg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~ 546 (596)
T PLN00044 467 VGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLP 546 (596)
T ss_pred EeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccC
Confidence 9999999997766789999999999999999999999999999999999999999999999999999877654 445688
Q ss_pred CCCchhhccccCCCC
Q 020366 312 IPSNILVCGKAVGHH 326 (327)
Q Consensus 312 ~P~~~~~C~~~~~~~ 326 (327)
+|++.+.||..++.+
T Consensus 547 pP~~~~~Cg~~~~~~ 561 (596)
T PLN00044 547 IPDNAIFCGALSSLQ 561 (596)
T ss_pred CCcccCcccccccCC
Confidence 999999998776543
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.3e-68 Score=520.02 Aligned_cols=321 Identities=48% Similarity=0.842 Sum_probs=233.8
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCC----CceEEEEEecccCCCcee
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP----KDYYIVASTRFTKNVLTA 76 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~----~~y~ir~~~~~~~~~~~~ 76 (327)
||||||+|+.+.+.|+||||+|+|||+||.+++|..+++|.|++||||||||+++++. ++||||+...++.....+
T Consensus 212 RlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~ 291 (545)
T PLN02168 212 RLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDAYLGG 291 (545)
T ss_pred EEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCCCcce
Confidence 8999999999999999999999999999999999999999999999999999998643 379999997655555678
Q ss_pred EEEEEecCCCCCCCCCCCCCCC-CcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccccCCeEEEE
Q 020366 77 TAILHYTNSHSPASGPLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYA 155 (327)
Q Consensus 77 ~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 155 (327)
.|||+|+++....+.++|..|. .+...+.+....+...+.|..+.+.|...+.+.....++++.+...+...+|..+|+
T Consensus 292 ~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 371 (545)
T PLN02168 292 VALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYT 371 (545)
T ss_pred EEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEEEE
Confidence 9999998764322223333332 122111121112222334322223333222111223455555443211124567899
Q ss_pred EcCccCcCCCCccccccccCCCCccccCCCCCCCCCCCCcceeeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEe
Q 020366 156 VNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGY 235 (327)
Q Consensus 156 iN~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~ 235 (327)
|||++|..|.+|+|...++++.+.+..+.....|.+......++++.++.|++|||+|+|.....||||||||+||||++
T Consensus 372 iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~ 451 (545)
T PLN02168 372 INGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGY 451 (545)
T ss_pred ECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEEC
Confidence 99999999999998665444333332221111121211223468899999999999999998889999999999999999
Q ss_pred ccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEEE-----cCccc-cccc
Q 020366 236 GSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVW-----NAVHS-LANE 309 (327)
Q Consensus 236 g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~-----~~~~~-~~~~ 309 (327)
|.|.|+......+|+.||++|||+.||++||++|||+|||||+|+|||||..|||+||+++++|. +|.+. ..+.
T Consensus 452 g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~ 531 (545)
T PLN02168 452 GFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDE 531 (545)
T ss_pred CCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccc
Confidence 99999876556799999999999999999999999999999999999999999999999999984 22221 1224
Q ss_pred CCCCCchhhccc
Q 020366 310 YDIPSNILVCGK 321 (327)
Q Consensus 310 ~~~P~~~~~C~~ 321 (327)
.++|+++++||.
T Consensus 532 ~~~P~~~~~cg~ 543 (545)
T PLN02168 532 NPIPGNVIRCGK 543 (545)
T ss_pred cCCChhhccccc
Confidence 679999999974
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.1e-64 Score=486.25 Aligned_cols=326 Identities=45% Similarity=0.722 Sum_probs=267.6
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccCC----Ccee
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKN----VLTA 76 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~~----~~~~ 76 (327)
||||||+|....+.|+|+||+|+|||+||.+++|+.+++|.|++||||||||+++|.+++|||++...+... ...+
T Consensus 220 ~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~ 299 (563)
T KOG1263|consen 220 RLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTT 299 (563)
T ss_pred EEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeE
Confidence 799999999999999999999999999999999999999999999999999999998889999999876644 6789
Q ss_pred EEEEEecCCCCCCCCCCC----CCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccccCCeE
Q 020366 77 TAILHYTNSHSPASGPLP----TGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKL 152 (327)
Q Consensus 77 ~ail~y~~~~~~~~~~~p----~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 152 (327)
.|+|+|.++..+.+...| .+|.++..++.++++.++..+....+.+.|+++.++......+.+.+.......+++.
T Consensus 300 ~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 379 (563)
T KOG1263|consen 300 TGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKL 379 (563)
T ss_pred EEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEE
Confidence 999999985443333322 1233555666666666766565556677888766555555555555554322346788
Q ss_pred EEEEcCccCcCCCCccccccccC-CCCccccCCCCCCCC--CC-CCcceeeEEEecCCcEEEEEEEeCCC---CcCceee
Q 020366 153 RYAVNGISYVNSDTPLKLADYFN-IPGIFSVNSIQSVPS--GG-ASSVATSVMQVNLHEYIEVVFQNNEK---TMQSWHL 225 (327)
Q Consensus 153 ~~~iN~~~~~~~~~P~l~~~~~~-~~~~~~~~~~~~~p~--~~-~~~~~~~~~~~~~g~~v~ivi~N~~~---~~HP~HL 225 (327)
+++||+.+|..|++|++.+.+.. ++|.++.+.....|. +. +.+.+++++.+++++.||||++|.+. ..|||||
T Consensus 380 ~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HL 459 (563)
T KOG1263|consen 380 RASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHL 459 (563)
T ss_pred EEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccce
Confidence 99999999999999988766554 466666554322211 21 23788999999999999999999873 5799999
Q ss_pred cCCCeEEEEeccCCCCc--cccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEEEcCc
Q 020366 226 DGYDFWVVGYGSGQWAA--EKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAV 303 (327)
Q Consensus 226 HG~~F~Vl~~g~G~~~~--~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~~~~ 303 (327)
|||+|||++.|.|+|+. +....||+.+|+.||||.|||+||++|||.|||||+|+||||+.+|++.||+++|.|..+.
T Consensus 460 HG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~ 539 (563)
T KOG1263|consen 460 HGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGE 539 (563)
T ss_pred eceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCC
Confidence 99999999999999998 4446899999999999999999999999999999999999999999999999999999888
Q ss_pred ccccccCCCCCchhhccccCCCC
Q 020366 304 HSLANEYDIPSNILVCGKAVGHH 326 (327)
Q Consensus 304 ~~~~~~~~~P~~~~~C~~~~~~~ 326 (327)
+..+++.++|++.++||..++.+
T Consensus 540 ~~~~~~~~~P~~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 540 ESLSSEYPPPKNLPKCGRASGIP 562 (563)
T ss_pred ccCCcCCCCCCCcccccccCCcC
Confidence 87767789999999999988764
No 8
>PLN02604 oxidoreductase
Probab=100.00 E-value=3e-63 Score=490.63 Aligned_cols=309 Identities=28% Similarity=0.550 Sum_probs=223.9
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCC-CceEEEEEeccc-CCCceeEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP-KDYYIVASTRFT-KNVLTATA 78 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~-~~y~ir~~~~~~-~~~~~~~a 78 (327)
||||||+|+.+.++|+||||+|+|||+||.+++|+++++|.|++||||||||++++++ ++||||+..... .+...++|
T Consensus 235 RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~a 314 (566)
T PLN02604 235 RLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLA 314 (566)
T ss_pred EEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeE
Confidence 8999999999999999999999999999999999999999999999999999999865 489999875432 24467899
Q ss_pred EEEecCCCCCCCC--CCCCCCC-CcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccccCCeEEEE
Q 020366 79 ILHYTNSHSPASG--PLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYA 155 (327)
Q Consensus 79 il~y~~~~~~~~~--~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 155 (327)
||+|++.....+. ..+..+. ++.+...+....++. +.+. ..+ + ....++++.+.......++..+|+
T Consensus 315 IL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~-------~~~~d~~~~~~~~~~~~~~~~~w~ 384 (566)
T PLN02604 315 IFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKA-RHGY-IHP-P-------PLTSDRVIVLLNTQNEVNGYRRWS 384 (566)
T ss_pred EEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccc-cccC-cCC-C-------CCCCCeEEEEeccccccCCeEEEE
Confidence 9999864321110 1111111 111101110000000 0000 000 1 123456665533222234567899
Q ss_pred EcCccCcCCCCccccccccCCCCccccCCCCC-----------CCCCCCCcceeeEEEecCCcEEEEEEEeCC------C
Q 020366 156 VNGISYVNSDTPLKLADYFNIPGIFSVNSIQS-----------VPSGGASSVATSVMQVNLHEYIEVVFQNNE------K 218 (327)
Q Consensus 156 iN~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~-----------~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~------~ 218 (327)
|||.+|..|..|+|...+...+++|+.+.... .+.+...+.+.+++.++.|++|||+|+|.. .
T Consensus 385 in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~ 464 (566)
T PLN02604 385 VNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNS 464 (566)
T ss_pred ECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCC
Confidence 99999998889988766555556665321100 001112344667899999999999999985 4
Q ss_pred CcCceeecCCCeEEEEeccCCCCccc-cccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEE
Q 020366 219 TMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYL 297 (327)
Q Consensus 219 ~~HP~HLHG~~F~Vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~ 297 (327)
..||||||||+||||++|.|.|+... ...+|+.||++|||+.||++||++|||+|||||+|+|||||++|+..||+++|
T Consensus 465 ~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~ 544 (566)
T PLN02604 465 ETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVF 544 (566)
T ss_pred CCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEE
Confidence 57999999999999999999997542 34689999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcccccccCCCCCchhhccccCC
Q 020366 298 KVWNAVHSLANEYDIPSNILVCGKAVG 324 (327)
Q Consensus 298 ~v~~~~~~~~~~~~~P~~~~~C~~~~~ 324 (327)
... .+.+ .++|+++++|+..+|
T Consensus 545 ~e~--~~~~---~~~p~~~~~C~~~~~ 566 (566)
T PLN02604 545 EEG--IERV---GKLPSSIMGCGESKG 566 (566)
T ss_pred eeC--hhhc---cCCCCCcCccccCCC
Confidence 643 3433 678999999986654
No 9
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=5.6e-63 Score=487.33 Aligned_cols=311 Identities=27% Similarity=0.430 Sum_probs=220.5
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccC----CCcee
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTK----NVLTA 76 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~----~~~~~ 76 (327)
||||||+|+.+.+.|+||||+|+|||+||.+++|+++++|.|++||||||+|++++++|+||||+....++ ....+
T Consensus 198 RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~ 277 (539)
T TIGR03389 198 LLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTT 277 (539)
T ss_pred EEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcce
Confidence 89999999999999999999999999999999999999999999999999999998889999999764321 23568
Q ss_pred EEEEEecCCCCCCCCCCCCCCC-CcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEecccc---------
Q 020366 77 TAILHYTNSHSPASGPLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAP--------- 146 (327)
Q Consensus 77 ~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--------- 146 (327)
.|||+|++.........+..|. .+...... ....+.+......|... ...+++++.+.....
T Consensus 278 ~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~ 349 (539)
T TIGR03389 278 TAILQYKGTSNSAKPILPTLPAYNDTAAATN----FSNKLRSLNSAQYPANV----PVTIDRRLFFTIGLGLDPCPNNTC 349 (539)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCchhhhhH----HHhhcccccccCCCCCC----CCCCCeEEEEEeecccccCccccc
Confidence 9999998754211111111111 11100000 00011111100001100 012344433332111
Q ss_pred -c-cCCeEEEEEcCccCcCCCCccccccccCCCCccccCCCCCCCC-----------CCCCcceeeEEEecCCcEEEEEE
Q 020366 147 -L-INGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPS-----------GGASSVATSVMQVNLHEYIEVVF 213 (327)
Q Consensus 147 -~-~~g~~~~~iN~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~-----------~~~~~~~~~~~~~~~g~~v~ivi 213 (327)
. .....+|+|||++|..|..|+|...+.++.|.+..+.....|. +-..+.+++++.++.|++|||+|
T Consensus 350 ~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi 429 (539)
T TIGR03389 350 QGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVL 429 (539)
T ss_pred ccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEE
Confidence 0 1224689999999998999988655444444332211111110 01123367889999999999999
Q ss_pred EeCC---CCcCceeecCCCeEEEEeccCCCCccc-cccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhh
Q 020366 214 QNNE---KTMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQ 289 (327)
Q Consensus 214 ~N~~---~~~HP~HLHG~~F~Vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~ 289 (327)
+|.+ ...||||||||+||||++|.|.|+... ...+|+.||++|||++||++||++|||+|||||+|+|||||++|+
T Consensus 430 ~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~ 509 (539)
T TIGR03389 430 QDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHT 509 (539)
T ss_pred ecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchh
Confidence 9985 348999999999999999999997542 236899999999999999999999999999999999999999999
Q ss_pred ccCceEEEEEEcCcccccccCCCCCchhhc
Q 020366 290 YLGQQFYLKVWNAVHSLANEYDIPSNILVC 319 (327)
Q Consensus 290 ~~Gm~~~~~v~~~~~~~~~~~~~P~~~~~C 319 (327)
.+||+++|.+....+...+.+++|+++++|
T Consensus 510 ~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 510 TWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred hhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 999999998864433333468899999999
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.4e-62 Score=484.43 Aligned_cols=304 Identities=27% Similarity=0.529 Sum_probs=219.8
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCC-CceEEEEEeccc-CCCceeEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP-KDYYIVASTRFT-KNVLTATA 78 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~-~~y~ir~~~~~~-~~~~~~~a 78 (327)
||||||+|+.+.+.|+||||+|+|||+||++++|++++.|.|++||||||||++++++ ++||||+..... .....+.|
T Consensus 214 RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~a 293 (541)
T TIGR03388 214 RLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLT 293 (541)
T ss_pred EEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEE
Confidence 8999999999999999999999999999999999999999999999999999999865 589999986543 22346889
Q ss_pred EEEecCCCCCC--CCCCCCCCC-CcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccccCCeEEEE
Q 020366 79 ILHYTNSHSPA--SGPLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYA 155 (327)
Q Consensus 79 il~y~~~~~~~--~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 155 (327)
||+|.+..... +.+.|..|. .+..... .....+.+....+.|. ...++++.+.......++..+|+
T Consensus 294 iL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 294 VLNYYPNSPSRLPPTPPPVTPAWDDFDRSK----AFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred EEEECCCCCCCCCCCCCCCCCCccccchhh----ccchhhhccccCCCCC-------CCCCcEEEEeccCcccCceEEEE
Confidence 99998754211 011111121 1110000 0000010100011111 12355554433222224556899
Q ss_pred EcCccCcCCCCccccccccCCCCccccCCCC----------CCCCCCCCcceeeEEEecCCcEEEEEEEeCC------CC
Q 020366 156 VNGISYVNSDTPLKLADYFNIPGIFSVNSIQ----------SVPSGGASSVATSVMQVNLHEYIEVVFQNNE------KT 219 (327)
Q Consensus 156 iN~~~~~~~~~P~l~~~~~~~~~~~~~~~~~----------~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~------~~ 219 (327)
|||.+|..|..|+|.+...+..++|+.+... ..+.....+.|++++.++.|++|||+|+|.+ ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 9999999889999876654444444321100 0011123455678899999999999999974 45
Q ss_pred cCceeecCCCeEEEEeccCCCCcc-ccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEE
Q 020366 220 MQSWHLDGYDFWVVGYGSGQWAAE-KRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLK 298 (327)
Q Consensus 220 ~HP~HLHG~~F~Vl~~g~G~~~~~-~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~ 298 (327)
.||||||||+||||++|.|.|+.+ ....+|+.||++|||++||++||++|||+|||||+|+|||||++|+.+||+++|.
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~ 522 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFA 522 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEe
Confidence 799999999999999999999754 2346899999999999999999999999999999999999999999999999996
Q ss_pred EEcCcccccccCCCCCchhhcc
Q 020366 299 VWNAVHSLANEYDIPSNILVCG 320 (327)
Q Consensus 299 v~~~~~~~~~~~~~P~~~~~C~ 320 (327)
.. .+.+ ..+|+++++|+
T Consensus 523 e~--~~~~---~~~P~~~~~C~ 539 (541)
T TIGR03388 523 EG--VEKV---GKLPKEALGCG 539 (541)
T ss_pred cc--cccc---CCCCccccCCC
Confidence 43 3434 56899999997
No 11
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.7e-62 Score=484.57 Aligned_cols=307 Identities=29% Similarity=0.522 Sum_probs=220.9
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCC-CceEEEEEecccC-CCceeEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP-KDYYIVASTRFTK-NVLTATA 78 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~-~~y~ir~~~~~~~-~~~~~~a 78 (327)
||||||+|+.+.++|+||||+|+|||+||.+++|+++++|.|++||||||||+++|++ ++||||+...... ......|
T Consensus 237 RlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~a 316 (574)
T PLN02191 237 RIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALT 316 (574)
T ss_pred EEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceE
Confidence 8999999999999999999999999999999999999999999999999999999865 5899999764322 1234579
Q ss_pred EEEecCCCCCC--CCCCCCCCC-CcccccccccccccccccccCCCC-CCCCCCCCCCcCceEEEEEeccccccCCeEEE
Q 020366 79 ILHYTNSHSPA--SGPLPTGPT-YEIHWSMKQARTFRWNLTANAARP-NPQGSFHYGKINTTRTIVLANSAPLINGKLRY 154 (327)
Q Consensus 79 il~y~~~~~~~--~~~~p~~p~-~~~~~~~~~~~~~~~~l~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 154 (327)
||+|.+..... +.+.|..|. .+.... ......+......+ .|. ...++++.+... ....+..+|
T Consensus 317 il~Y~~~~~~~~p~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~-~~~~~~~~~ 384 (574)
T PLN02191 317 ILNYVTAPASKLPSSPPPVTPRWDDFERS----KNFSKKIFSAMGSPSPPK-------KYRKRLILLNTQ-NLIDGYTKW 384 (574)
T ss_pred EEEECCCCCCCCCCCCCCCCCcccccchh----hcccccccccccCCCCCC-------cccceEEEeccc-ceeCCeEEE
Confidence 99998754311 111111111 111100 00111111100001 111 123455544321 112355689
Q ss_pred EEcCccCcCCCCccccccccCCCCccccCCCCC-CCCC---------CCCcceeeEEEecCCcEEEEEEEeCC------C
Q 020366 155 AVNGISYVNSDTPLKLADYFNIPGIFSVNSIQS-VPSG---------GASSVATSVMQVNLHEYIEVVFQNNE------K 218 (327)
Q Consensus 155 ~iN~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~-~p~~---------~~~~~~~~~~~~~~g~~v~ivi~N~~------~ 218 (327)
+|||++|..|.+|+|.+.+.+..+.|+.+.... .+.. ...+.+.+++.++.|++|||+|+|.+ .
T Consensus 385 ~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~ 464 (574)
T PLN02191 385 AINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVS 464 (574)
T ss_pred EECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCC
Confidence 999999998999998776554445443221100 0000 01234677899999999999999985 5
Q ss_pred CcCceeecCCCeEEEEeccCCCCccc-cccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEE
Q 020366 219 TMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYL 297 (327)
Q Consensus 219 ~~HP~HLHG~~F~Vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~ 297 (327)
..||||||||+||||++|.|.|+++. ...+|+.||++|||+.||++||++|||+|||||+|+|||||++|+.+||+++|
T Consensus 465 ~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~ 544 (574)
T PLN02191 465 EIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVF 544 (574)
T ss_pred CCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEE
Confidence 78999999999999999999998632 24689999999999999999999999999999999999999999999999988
Q ss_pred EEEcCcccccccCCCCCchhhccccCC
Q 020366 298 KVWNAVHSLANEYDIPSNILVCGKAVG 324 (327)
Q Consensus 298 ~v~~~~~~~~~~~~~P~~~~~C~~~~~ 324 (327)
. |..+.+ +++|++++.|+.+.+
T Consensus 545 ~--e~~~~~---~~~p~~~~~C~~~~~ 566 (574)
T PLN02191 545 A--EGLNRI---GKIPDEALGCGLTKQ 566 (574)
T ss_pred e--cChhhc---cCCCcchhhhhcccc
Confidence 4 444444 458899999987765
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.1e-59 Score=460.75 Aligned_cols=296 Identities=23% Similarity=0.366 Sum_probs=212.2
Q ss_pred CeeEEecCCCcEEEEEEeCCe-EEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCC-------CCceEEEEEecccCC
Q 020366 1 MFRISNVGLSTSFNFRIQGHT-MKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP-------PKDYYIVASTRFTKN 72 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~-l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~-------~~~y~ir~~~~~~~~ 72 (327)
||||||+|+.+.+.|+||||+ |+|||+||++++|++++.|.|++||||||||+++++ +++||||+.....++
T Consensus 209 RlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~ 288 (538)
T TIGR03390 209 RLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPK 288 (538)
T ss_pred EEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCC
Confidence 899999999999999999999 999999999999999999999999999999999975 378999998655444
Q ss_pred CceeEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccc--cCC
Q 020366 73 VLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPL--ING 150 (327)
Q Consensus 73 ~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~g 150 (327)
...++|||+|.+.........|..|..........+.+ ..|.|......+. + .....+++++.+...+.. .++
T Consensus 289 ~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~l~pl~~~~~~~--~-~~~~~~d~~~~l~~~~~~~~~~g 363 (538)
T TIGR03390 289 VYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLE--YELEPLSEENNQD--F-PTLDEVTRRVVIDAHQNVDPLNG 363 (538)
T ss_pred cceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhh--eeeEecCccccCC--C-CCCCcCceEEEEEccccccccCC
Confidence 56789999997653221111111111000000001111 1233332211000 0 001245777777665422 246
Q ss_pred eEEEEEcCccCcC--CCCccccccccCC-CCccccCCCCCCCCCCCCcceeeEEEecCCcEEEEEEEeCC--------CC
Q 020366 151 KLRYAVNGISYVN--SDTPLKLADYFNI-PGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNE--------KT 219 (327)
Q Consensus 151 ~~~~~iN~~~~~~--~~~P~l~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~--------~~ 219 (327)
..+|+|||++|.. +.+|+|...+.+. ......+. .+...+....++++.++.|++|||+|+|.. ..
T Consensus 364 ~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~ 440 (538)
T TIGR03390 364 RVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTA---ALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVD 440 (538)
T ss_pred eEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCccc---ccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCC
Confidence 6889999999985 7899987654221 00000000 000011223466788999999999999974 47
Q ss_pred cCceeecCCCeEEEEeccCCCCccc-cccCCCCCCCceeeEEeC----------CCCEEEEEEEecCCeeeEEEeeehhh
Q 020366 220 MQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLTRHTAQVY----------PQSWTVILVSLDNQGMWNMRSAIWER 288 (327)
Q Consensus 220 ~HP~HLHG~~F~Vl~~g~G~~~~~~-~~~~n~~~p~~rDTv~vp----------~~g~~virf~adnpG~W~~HCHi~~h 288 (327)
.||||||||+||||++|.|.|++.. ...+|+.||++|||+.|| ++||++|||++||||+|+|||||.+|
T Consensus 441 ~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H 520 (538)
T TIGR03390 441 THPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQH 520 (538)
T ss_pred CCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhh
Confidence 8999999999999999999998543 235788899999999996 78999999999999999999999999
Q ss_pred hccCceEEEEEEcCcc
Q 020366 289 QYLGQQFYLKVWNAVH 304 (327)
Q Consensus 289 ~~~Gm~~~~~v~~~~~ 304 (327)
+.+||+++|.+.+.++
T Consensus 521 ~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 521 MVMGMQTVWVFGDAED 536 (538)
T ss_pred hhccceEEEEeCChHH
Confidence 9999999999876544
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.5e-42 Score=341.75 Aligned_cols=247 Identities=18% Similarity=0.196 Sum_probs=170.6
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccCCCceeEEEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAIL 80 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~~~~~~~ail 80 (327)
||||||+|+.+.|+|+|+||+|+|||+||++|+|++++.|.|++||||||||++.+ .|.|+|++....+. ....++|
T Consensus 271 RLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g~~~i~a~~~~~~--~~~~~~l 347 (587)
T TIGR01480 271 RLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DDAFTIFAQDSDRT--GYARGTL 347 (587)
T ss_pred EEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-CceEEEEEEecCCC--ceEEEEE
Confidence 89999999999999999999999999999999999999999999999999999874 57899999765332 3567788
Q ss_pred EecCCCCCCCCCCCCCCC---Ccccc-c-----------c------ccc---------c--ccccc---cc---------
Q 020366 81 HYTNSHSPASGPLPTGPT---YEIHW-S-----------M------KQA---------R--TFRWN---LT--------- 116 (327)
Q Consensus 81 ~y~~~~~~~~~~~p~~p~---~~~~~-~-----------~------~~~---------~--~~~~~---l~--------- 116 (327)
++.+.......+++..|. .+... . . +.. . ++..+ ..
T Consensus 348 ~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (587)
T TIGR01480 348 AVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPL 427 (587)
T ss_pred ecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCcc
Confidence 876542100011111110 01100 0 0 000 0 00000 00
Q ss_pred -------ccCCCCCCC--------CCCC----------CCCcCceEEEEEeccccccCCeEEEEEcCccCcCCCCccccc
Q 020366 117 -------ANAARPNPQ--------GSFH----------YGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLA 171 (327)
Q Consensus 117 -------~~~~~~~p~--------~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~~~~~~~~P~l~~ 171 (327)
+......|. .... .....+++++.+.... ....+.|+|||..|.+ .
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g--~m~~~~wtiNG~~~~~-~------ 498 (587)
T TIGR01480 428 VDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTG--NMERFAWSFDGEAFGL-K------ 498 (587)
T ss_pred ccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcC--CCceeEEEECCccCCC-C------
Confidence 000000000 0000 0001345555554321 1234679999988752 0
Q ss_pred cccCCCCccccCCCCCCCCCCCCcceeeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCC
Q 020366 172 DYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLA 251 (327)
Q Consensus 172 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~ 251 (327)
..+.++.|++|+|.|.|...+.||||||||.|+++..+ |.
T Consensus 499 ---------------------------~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~-G~------------ 538 (587)
T TIGR01480 499 ---------------------------TPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQ-GE------------ 538 (587)
T ss_pred ---------------------------CceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCC-Cc------------
Confidence 11468999999999999999999999999999998654 42
Q ss_pred CCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEE
Q 020366 252 DTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKV 299 (327)
Q Consensus 252 ~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v 299 (327)
.+.++||+.|+|++++.++|.+||||.|+||||+++|++.||+..++|
T Consensus 539 ~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 539 FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 146789999999999999999999999999999999999999999987
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=6.1e-41 Score=327.72 Aligned_cols=231 Identities=18% Similarity=0.238 Sum_probs=154.6
Q ss_pred CeeEEecCCCcEEEEEE-eCCeEEEEEecCccc-eeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccC-----CC
Q 020366 1 MFRISNVGLSTSFNFRI-QGHTMKLVEVEGSHT-IQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTK-----NV 73 (327)
Q Consensus 1 RlRliNa~~~~~~~~si-dgh~l~VIa~DG~~v-~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~-----~~ 73 (327)
||||||+|+.+.|+|++ |||+|+|||+||+++ +|++++.|.|+|||||||+|++++ .++|++++...... ..
T Consensus 233 RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~ 311 (523)
T PRK10965 233 RLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPF 311 (523)
T ss_pred EEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC-CceEEEEEecccCcccccccC
Confidence 89999999999999998 899999999999986 899999999999999999999986 46799988643211 01
Q ss_pred ceeEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccc--------
Q 020366 74 LTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSA-------- 145 (327)
Q Consensus 74 ~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-------- 145 (327)
.....++++.....+....+|.. |.+.++.+.+. ....|++.+....
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~P~~------------------l~~~~~~~~~~-------~~~~r~~~l~~~~~~~~~~m~ 366 (523)
T PRK10965 312 DKPLPVLRIQPLLISASGTLPDS------------------LASLPALPSLE-------GLTVRRLQLSMDPRLDMMGMQ 366 (523)
T ss_pred CCceeEEEEeccCcCCCCcCChh------------------hccCCCCCccc-------ccceeEEEEeeccccchhhhh
Confidence 12345555543221111112210 00000000000 0011122111000
Q ss_pred ------c---------------c--------cC-----Ce-----EEEEEcCccCcCCCCccccccccCCCCccccCCCC
Q 020366 146 ------P---------------L--------IN-----GK-----LRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQ 186 (327)
Q Consensus 146 ------~---------------~--------~~-----g~-----~~~~iN~~~~~~~~~P~l~~~~~~~~~~~~~~~~~ 186 (327)
+ . .. +. ..|+|||++|... .
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~-~-------------------- 425 (523)
T PRK10965 367 MLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMN-K-------------------- 425 (523)
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCCC-C--------------------
Confidence 0 0 00 00 1257888877531 1
Q ss_pred CCCCCCCCcceeeEEEecCCcEEEEEEEeCCC-CcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCC
Q 020366 187 SVPSGGASSVATSVMQVNLHEYIEVVFQNNEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQS 265 (327)
Q Consensus 187 ~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~~-~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g 265 (327)
..+.++.|++++|.|.|.+. +.|||||||++|+||+++ |. ......+.|||||.|++ +
T Consensus 426 ------------~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~-g~-------~~~~~~~~wkDTv~v~~-~ 484 (523)
T PRK10965 426 ------------PMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSEN-GK-------PPAAHRAGWKDTVRVEG-G 484 (523)
T ss_pred ------------cceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEec-CC-------CCCccccccccEEEECC-c
Confidence 11467999999999999885 689999999999999997 42 11223468999999988 6
Q ss_pred EEEEEEEe----cCCeeeEEEeeehhhhccCceEEEEE
Q 020366 266 WTVILVSL----DNQGMWNMRSAIWERQYLGQQFYLKV 299 (327)
Q Consensus 266 ~~virf~a----dnpG~W~~HCHi~~h~~~Gm~~~~~v 299 (327)
.+.|++++ |++|.|||||||++|++.|||..|.|
T Consensus 485 ~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 485 RSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred EEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 66555443 57789999999999999999999987
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.8e-40 Score=321.59 Aligned_cols=224 Identities=15% Similarity=0.150 Sum_probs=151.6
Q ss_pred CeeEEecCCCcEEEEEE-eCCeEEEEEecCcc-ceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccC-----CC
Q 020366 1 MFRISNVGLSTSFNFRI-QGHTMKLVEVEGSH-TIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTK-----NV 73 (327)
Q Consensus 1 RlRliNa~~~~~~~~si-dgh~l~VIa~DG~~-v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~-----~~ 73 (327)
||||||+|+.+.|.|+| |||+|+|||+||++ .+|+.+++|.|++||||||||++++ .+.+.+.+...... ..
T Consensus 230 RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~ 308 (471)
T PRK10883 230 RLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGF 308 (471)
T ss_pred EEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccc
Confidence 89999999999999999 89999999999777 4899999999999999999999975 34566665321100 00
Q ss_pred c------eeEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccc
Q 020366 74 L------TATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPL 147 (327)
Q Consensus 74 ~------~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
. ....+++...... .+..+ . .++..|.+.. ..+. .....+++.+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~-----~~~~~-~----------~~p~~l~~~~--~~~~------~~~~~~~~~l~~---- 360 (471)
T PRK10883 309 FEPSSILVSTLVLTLRPTGL-----LPLVT-D----------NLPMRLLPDE--IMEG------SPIRSREISLGD---- 360 (471)
T ss_pred cCCccccccceeEEEEcccc-----ccCCC-C----------cCChhhcCCC--CCCC------CCcceEEEEecC----
Confidence 0 0111222221100 00000 0 0010111100 0000 111223443321
Q ss_pred cCCeEEEEEcCccCcCCCCccccccccCCCCccccCCCCCCCCCCCCcceeeEEEecCCcEEEEEEEeCCCCcCceeecC
Q 020366 148 INGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDG 227 (327)
Q Consensus 148 ~~g~~~~~iN~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG 227 (327)
..|.|||++|.+.+.+ +.++.|++++|.|.|. +.|||||||
T Consensus 361 ----~~~~INg~~~~~~~~~---------------------------------~~~~~g~~e~W~~~n~--~~HP~HlHg 401 (471)
T PRK10883 361 ----DLPGINGALWDMNRID---------------------------------VTAQQGTWERWTVRAD--MPQAFHIEG 401 (471)
T ss_pred ----CcCccCCcccCCCcce---------------------------------eecCCCCEEEEEEECC--CCcCEeECC
Confidence 1478999998642111 3578999999999886 689999999
Q ss_pred CCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCe----eeEEEeeehhhhccCceEEEEEEcC
Q 020366 228 YDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG----MWNMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 228 ~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG----~W~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
+.||||+++... ....+..|||||.|+ +.+.|++++|++| .|||||||++|+++|||..|+|..+
T Consensus 402 ~~FqVl~~~G~~--------~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 402 VMFLIRNVNGAM--------PFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred ccEEEEEecCCC--------CCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 999999996321 111224799999996 4699999999998 7999999999999999999998643
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.6e-35 Score=283.63 Aligned_cols=237 Identities=19% Similarity=0.174 Sum_probs=160.4
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEecccCCCceeEEEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAIL 80 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~~~~~~~ail 80 (327)
||||+|+++.+.+.+++.+++|+||++||.+++|+.++.+.|++||||||+|+.++ .+.|.+.+..... .....+..
T Consensus 210 rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~~~~l~~~~~~~--~~~~~~~~ 286 (451)
T COG2132 210 RLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GGAVTLTALGEDM--PDTLKGFR 286 (451)
T ss_pred EEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CCeEEEEeccccC--Cceeeeee
Confidence 89999999999999999999999999999999999999999999999999999986 5667777764111 11122222
Q ss_pred EecCCCCCC---CCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCceEEEEEeccccccCCeEEEEEc
Q 020366 81 HYTNSHSPA---SGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVN 157 (327)
Q Consensus 81 ~y~~~~~~~---~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN 157 (327)
......... .......+..+. .+.. ....+.... ..+. ...+..+.+. ...+...|.+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~d~---~~~~--~~~~~~~~~--~~~~-------~~~~~~~~l~----~~~~~~~~~~n 348 (451)
T COG2132 287 APNPILTPSYPVLNGRVGAPTGDM---ADHA--PVGLLVTIL--VEPG-------PNRDTDFHLI----GGIGGYVWAIN 348 (451)
T ss_pred ccccccccccccccccccCCCcch---hhcc--ccccchhhc--CCCc-------ccccccchhh----ccccccccccc
Confidence 111110000 000000010000 0000 000000000 0000 0011111111 11233568888
Q ss_pred CccCcCCCCccccccccCCCCccccCCCCCCCCCCCCcceeeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEecc
Q 020366 158 GISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGS 237 (327)
Q Consensus 158 ~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~ 237 (327)
++.|.+.+ ..+.++.|++++|+|+|.+.+.|||||||+.|+|++.+
T Consensus 349 ~~~~~~~~---------------------------------~~~~~~~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~~~- 394 (451)
T COG2132 349 GKAFDDNR---------------------------------VTLIAKAGTRERWVLTNDTPMPHPFHLHGHFFQVLSGD- 394 (451)
T ss_pred CccCCCCc---------------------------------CceeecCCCEEEEEEECCCCCccCeEEcCceEEEEecC-
Confidence 88776311 12567899999999999999999999999999999997
Q ss_pred CCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEEE
Q 020366 238 GQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVW 300 (327)
Q Consensus 238 G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~ 300 (327)
. ......+.||||+.+.+++.++++|.+|+||.||||||+++|++.|||..+.|.
T Consensus 395 ~--------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 395 A--------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred C--------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 1 112244799999999999999999999999999999999999999999999875
No 17
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=100.00 E-value=4.4e-33 Score=228.23 Aligned_cols=108 Identities=31% Similarity=0.485 Sum_probs=97.1
Q ss_pred CcceeeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEe
Q 020366 194 SSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL 273 (327)
Q Consensus 194 ~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a 273 (327)
.+.++.++.++.|++|||+|+|.+...|||||||++|+|++++.+.++......+++.+|.||||+.|+++||++|||++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~ 108 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA 108 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe
Confidence 34467789999999999999999999999999999999999997776544455678899999999999999999999999
Q ss_pred cCCeeeEEEeeehhhhccCceEEEEEEc
Q 020366 274 DNQGMWNMRSAIWERQYLGQQFYLKVWN 301 (327)
Q Consensus 274 dnpG~W~~HCHi~~h~~~Gm~~~~~v~~ 301 (327)
||||.|+||||+++|++.|||+.++|..
T Consensus 109 ~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 109 DNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999853
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.88 E-value=9.2e-23 Score=171.01 Aligned_cols=84 Identities=40% Similarity=0.584 Sum_probs=74.0
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEeccc----CCCcee
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFT----KNVLTA 76 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~----~~~~~~ 76 (327)
||||||+|+.+.+.|+||||+|+|||+||.+++|++++.|.|++||||||||++++++|+|||++..... ....++
T Consensus 71 rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~ 150 (159)
T PF00394_consen 71 RLRLINAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNA 150 (159)
T ss_dssp EEEEEEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTT
T ss_pred EEEEEeccCCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEE
Confidence 8999999999999999999999999999999999999999999999999999999878999999963211 234678
Q ss_pred EEEEEecC
Q 020366 77 TAILHYTN 84 (327)
Q Consensus 77 ~ail~y~~ 84 (327)
.|||+|++
T Consensus 151 ~aiL~Y~~ 158 (159)
T PF00394_consen 151 LAILRYDG 158 (159)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99999986
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.39 E-value=4.2e-13 Score=124.06 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=72.5
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccceeeE--eeEEEEcCCceEEEEEEeCCCCCceEEEEEecccCCCceeEE
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNI--YDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATA 78 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v~P~~--v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~~~~~~~~a 78 (327)
||||||++..+.+.|+++||.+++|+.||.+++|.. ++.+.|+|||||||+|++++ +|.|++++............|
T Consensus 213 RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~~~g~~~ 291 (311)
T TIGR02376 213 RVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAFEKGAAA 291 (311)
T ss_pred EEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHHhCCCEE
Confidence 899999999999999999999999999999998644 89999999999999999997 689999987543321234679
Q ss_pred EEEecCCC
Q 020366 79 ILHYTNSH 86 (327)
Q Consensus 79 il~y~~~~ 86 (327)
+|+|++..
T Consensus 292 ~i~~~g~~ 299 (311)
T TIGR02376 292 QVKVEGAW 299 (311)
T ss_pred EEEECCCC
Confidence 99998654
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.25 E-value=3e-11 Score=111.79 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=67.0
Q ss_pred EEEecCCcEEEEEEEeCCC--CcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCe
Q 020366 200 VMQVNLHEYIEVVFQNNEK--TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 277 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~--~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG 277 (327)
++.++.|++|+|.+.|... ..|++|+||+. +.+ |. + .+..|+||++..++|.+++||
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~d-g~-------------~---~~~~I~PG~t~ty~F~~~~~G 118 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GAL-GG-------------A---ALTQVNPGETATLRFKATRPG 118 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccC-CC-------------C---cceeECCCCeEEEEEEcCCCE
Confidence 3678999999999999854 68999999974 111 10 1 234599999999999999999
Q ss_pred eeEEEee----ehhhhccCceEEEEEEcC
Q 020366 278 MWNMRSA----IWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 278 ~W~~HCH----i~~h~~~Gm~~~~~v~~~ 302 (327)
.|+|||| +..|...||+..+.|..+
T Consensus 119 ty~YH~H~~~~~~~q~~~Gl~G~liV~~~ 147 (311)
T TIGR02376 119 AFVYHCAPPGMVPWHVVSGMNGAIMVLPR 147 (311)
T ss_pred EEEEEcCCCCchhHHhhcCcceEEEeecc
Confidence 9999999 567999999999998743
No 21
>PLN02604 oxidoreductase
Probab=99.09 E-value=5.6e-10 Score=111.37 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=69.8
Q ss_pred EEecCCcEEEEEEEeCC-CCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 201 MQVNLHEYIEVVFQNNE-KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~-~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
++++.|++|++.+.|.. ...|+||+||+.. .+. .|. +-.+......|+||+....+|+++++|.|
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~---~~~---------DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~ 122 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGT---PWF---------DGTEGVTQCPILPGETFTYEFVVDRPGTY 122 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCC---ccc---------cCCCccccCccCCCCeEEEEEEcCCCEEE
Confidence 67899999999999986 5789999999952 111 010 00112244578999999999999999999
Q ss_pred EEEeeehhhhccCceEEEEEEcC
Q 020366 280 NMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
+||||...|...||...+.|..+
T Consensus 123 wyH~H~~~q~~~Gl~G~liV~~~ 145 (566)
T PLN02604 123 LYHAHYGMQREAGLYGSIRVSLP 145 (566)
T ss_pred EEeeCcHHHHhCCCeEEEEEEec
Confidence 99999999999999999998754
No 22
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.84 E-value=2e-08 Score=79.63 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=66.1
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecC-Ce
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-QG 277 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adn-pG 277 (327)
+++.++.|+.|++.+.|.....+.+|.||...-- ..|.+..+ .. + .-.|+||+....+|.++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~-----~~~~DG~~--~~---~----~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPP-----SPWMDGVP--GV---T----QCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTT-----GGGGSGGT--TT---S----GSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeee-----eeecCCcc--cc---c----ceeEEeecceeeeEeeecccc
Confidence 3578999999999999998888999999976311 00110000 00 0 113778999999999998 99
Q ss_pred eeEEEeeehhhhccCceEEEEEEc
Q 020366 278 MWNMRSAIWERQYLGQQFYLKVWN 301 (327)
Q Consensus 278 ~W~~HCHi~~h~~~Gm~~~~~v~~ 301 (327)
.+.||||...+..+||..++.|..
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~ 115 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEP 115 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-
T ss_pred ceeEeeCCCchhcCcCEEEEEEcC
Confidence 999999998876699999998754
No 23
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.55 E-value=3.4e-07 Score=76.60 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=75.2
Q ss_pred eEEEecCCcEEEEEEEeCCC-CcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecC-C
Q 020366 199 SVMQVNLHEYIEVVFQNNEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-Q 276 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~-~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adn-p 276 (327)
.++.++.|++++|.|.|.+. ..+.|++.||+|+|++.+ |. ...|...|++.|.+|+.+.|.++++. +
T Consensus 60 ~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~D-G~----------~v~p~~~~~l~l~~G~R~dvlv~~~~~~ 128 (159)
T PF00394_consen 60 PVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAAD-GV----------PVEPYKVDTLVLAPGQRYDVLVTADQPP 128 (159)
T ss_dssp GEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEET-TE----------EEEEEEESBEEE-TTEEEEEEEEECSCS
T ss_pred ceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeec-cc----------cccccccceEEeeCCeEEEEEEEeCCCC
Confidence 45889999999999999876 479999999999999997 42 22388899999999999999999987 9
Q ss_pred eeeEEEe----eehhhhccCceEEEEE
Q 020366 277 GMWNMRS----AIWERQYLGQQFYLKV 299 (327)
Q Consensus 277 G~W~~HC----Hi~~h~~~Gm~~~~~v 299 (327)
|.|.++| +...+...++++++..
T Consensus 129 g~y~i~~~~~~~~~~~~~~~~~~aiL~ 155 (159)
T PF00394_consen 129 GNYWIRASYQHDSINDPQNGNALAILR 155 (159)
T ss_dssp SEEEEEEEESSSSSHSHGGGTTEEEEE
T ss_pred CeEEEEEecccCCCccCCCcEEEEEEE
Confidence 9999999 5456778888888764
No 24
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.54 E-value=3.2e-07 Score=91.41 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=67.8
Q ss_pred EEecCCcEEEEEEEeCC-CCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 201 MQVNLHEYIEVVFQNNE-KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~-~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
++++.|+.|+|.+.|.. ...+.+|+||.+. .+. .|... .+.-..-.|+||+....+|.++++|.|
T Consensus 34 i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~--~~~---~~~DG---------~~~vtq~~I~PG~s~~y~f~~~~~Gt~ 99 (541)
T TIGR03388 34 IRAQAGDTIVVELTNKLHTEGVVIHWHGIRQ--IGT---PWADG---------TAGVTQCAINPGETFIYNFVVDRPGTY 99 (541)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEEecCcCC--cCC---cccCC---------CCccccCCcCCCCEEEEEEEcCCCEEE
Confidence 67899999999999985 4679999999952 111 11000 011122357899999999999999999
Q ss_pred EEEeeehhhhccCceEEEEEEcC
Q 020366 280 NMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
.||||...+...||...+.|..+
T Consensus 100 wyH~H~~~q~~~Gl~G~liV~~~ 122 (541)
T TIGR03388 100 FYHGHYGMQRSAGLYGSLIVDVP 122 (541)
T ss_pred EEEecchHHhhccceEEEEEecC
Confidence 99999999999999999998744
No 25
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.20 E-value=1e-05 Score=66.64 Aligned_cols=87 Identities=9% Similarity=0.006 Sum_probs=57.3
Q ss_pred EEEecCCcEEEEEEEeCCC-CcCceeecCCCe--EEEEeccCCCCccccccCCCCCCCceeeEEeCC---C--CEEEEEE
Q 020366 200 VMQVNLHEYIEVVFQNNEK-TMQSWHLDGYDF--WVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYP---Q--SWTVILV 271 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~-~~HP~HLHG~~F--~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~---~--g~~virf 271 (327)
.+.++.|+.|++++.|.+. ..|.|-||.+.- .....-.|. |..-..-.+|+ + +|..+.|
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~tf 119 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFTY 119 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEEE
Confidence 3788999999999999865 567666654321 100000010 11111122222 1 2568889
Q ss_pred EecCCeeeEEEeeehhhhccCceEEEEE
Q 020366 272 SLDNQGMWNMRSAIWERQYLGQQFYLKV 299 (327)
Q Consensus 272 ~adnpG~W~~HCHi~~h~~~Gm~~~~~v 299 (327)
+++.+|.+.||||+..|...||-..+.|
T Consensus 120 ~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 120 HFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred ECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 9899999999999999999999998876
No 26
>PLN02191 L-ascorbate oxidase
Probab=98.10 E-value=1.1e-05 Score=80.80 Aligned_cols=81 Identities=14% Similarity=0.018 Sum_probs=66.4
Q ss_pred EEEecCCcEEEEEEEeCCC-CcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceee------EEeCCCCEEEEEEE
Q 020366 200 VMQVNLHEYIEVVFQNNEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHT------AQVYPQSWTVILVS 272 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~-~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDT------v~vp~~g~~virf~ 272 (327)
+++++.|+.|++.+.|.-. ..+.+|.||.+.. + ..|.|- -.|+||+....+|.
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~------~--------------~~~~DGv~gvtq~pI~PG~s~~Y~f~ 114 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQK------G--------------SPWADGAAGVTQCAINPGETFTYKFT 114 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCC------C--------------CccccCCCccccCCcCCCCeEEEEEE
Confidence 3788999999999999854 6799999999721 1 011221 24889999999999
Q ss_pred ecCCeeeEEEeeehhhhccCceEEEEEE
Q 020366 273 LDNQGMWNMRSAIWERQYLGQQFYLKVW 300 (327)
Q Consensus 273 adnpG~W~~HCHi~~h~~~Gm~~~~~v~ 300 (327)
++.+|.+.||||...+...||...+.|.
T Consensus 115 ~~~~GT~wYHsH~~~q~~~Gl~G~liV~ 142 (574)
T PLN02191 115 VEKPGTHFYHGHYGMQRSAGLYGSLIVD 142 (574)
T ss_pred CCCCeEEEEeeCcHHHHhCCCEEEEEEc
Confidence 9999999999999989999999999985
No 27
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.86 E-value=9.2e-05 Score=56.77 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=57.8
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
.+.++.|++|+|+ |.+...|-+.++.-.+.. |.. .....+..+++.+.||+...+.|.+ ||.|
T Consensus 18 ~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y 80 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNKGGPHNVVFDEDAVPA-----GVK--------ELAKSLSHKDLLNSPGESYEVTFST--PGTY 80 (99)
T ss_pred EEEECCCCEEEEE--ECCCCCceEEECCCCCcc-----chh--------hhcccccccccccCCCCEEEEEeCC--CEEE
Confidence 4789999999876 767777877765432211 100 0011233467788899998887765 9999
Q ss_pred EEEeeehhhhccCceEEEEE
Q 020366 280 NMRSAIWERQYLGQQFYLKV 299 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v 299 (327)
.|||-. |..+||...+.|
T Consensus 81 ~y~C~~--H~~aGM~G~I~V 98 (99)
T TIGR02656 81 TFYCEP--HRGAGMVGKITV 98 (99)
T ss_pred EEEcCC--ccccCCEEEEEE
Confidence 999995 999999999876
No 28
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=97.85 E-value=6.1e-05 Score=75.46 Aligned_cols=85 Identities=13% Similarity=-0.023 Sum_probs=66.9
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
.+.++.|+.|+|.+.|.-...+-+|.||-.- -..-.|. |. .-.-.|+||+....+|.+..+|.+
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~--~~~~DGv-------------P~-vt~~~I~PG~s~~Y~f~~~~~GTy 140 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILL--PFQMDGV-------------PG-VSFAGIAPGETFTYRFPVRQSGTY 140 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcC--CccccCC-------------Cc-ccccccCCCCeEEEEEECCCCeeE
Confidence 3788999999999999988889999999862 1111120 11 111247899999999999999999
Q ss_pred EEEeeehhhhccCceEEEEEE
Q 020366 280 NMRSAIWERQYLGQQFYLKVW 300 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~ 300 (327)
.||||...+...||...+.|.
T Consensus 141 WYHsH~~~q~~~GL~G~lIV~ 161 (587)
T TIGR01480 141 WYHSHSGFQEQAGLYGPLIID 161 (587)
T ss_pred EEecCchhHhhccceEEEEEC
Confidence 999999888899999999885
No 29
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.75 E-value=0.00016 Score=58.07 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=49.3
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeE
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 280 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~ 280 (327)
++++.|+.|+|++.|.+...|.+-++++.+ ...|++++...++|.++-||.+.
T Consensus 63 I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~adKpG~Y~ 115 (135)
T TIGR03096 63 LVVKKGTPVKVTVENKSPISEGFSIDAYGI---------------------------SEVIKAGETKTISFKADKAGAFT 115 (135)
T ss_pred EEECCCCEEEEEEEeCCCCccceEECCCCc---------------------------ceEECCCCeEEEEEECCCCEEEE
Confidence 789999999999999998888776666421 23577889999999999999999
Q ss_pred EEeee
Q 020366 281 MRSAI 285 (327)
Q Consensus 281 ~HCHi 285 (327)
|||-+
T Consensus 116 y~C~~ 120 (135)
T TIGR03096 116 IWCQL 120 (135)
T ss_pred EeCCC
Confidence 99998
No 30
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=97.72 E-value=0.00011 Score=73.38 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=64.4
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEe-cCCee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL-DNQGM 278 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a-dnpG~ 278 (327)
.+.++.|++|++.+.|.-...+-+|.||... .+. . |. +.++..---.|+||+...-+|++ +.+|.
T Consensus 35 ~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q--~~~--~-~~---------DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT 100 (539)
T TIGR03389 35 TLYAREGDTVIVNVTNNVQYNVTIHWHGVRQ--LRN--G-WA---------DGPAYITQCPIQPGQSYVYNFTITGQRGT 100 (539)
T ss_pred EEEEEcCCEEEEEEEeCCCCCeeEecCCCCC--CCC--C-CC---------CCCcccccCCcCCCCeEEEEEEecCCCee
Confidence 3788999999999999988889999999862 111 0 10 00111111147899999999998 69999
Q ss_pred eEEEeeehhhhccCceEEEEEEcCc
Q 020366 279 WNMRSAIWERQYLGQQFYLKVWNAV 303 (327)
Q Consensus 279 W~~HCHi~~h~~~Gm~~~~~v~~~~ 303 (327)
+.||||.. +...||...+.|..+.
T Consensus 101 ~WYHsH~~-~~~~Gl~G~lIV~~~~ 124 (539)
T TIGR03389 101 LWWHAHIS-WLRATVYGAIVILPKP 124 (539)
T ss_pred EEEecCch-hhhccceEEEEEcCCC
Confidence 99999984 3456888888876543
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=97.68 E-value=0.00018 Score=71.64 Aligned_cols=88 Identities=13% Similarity=0.176 Sum_probs=67.4
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEe-cCCeee
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL-DNQGMW 279 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a-dnpG~W 279 (327)
++++.|++|++.+.|.-....-+|.||.+. ...+ |. +..+. -.--|+||+...-+|++ |.+|.+
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~--~~~~---~~---------DGv~g-tQcpI~PG~sftY~F~~~~q~GT~ 123 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQL--RKNS---WQ---------DGVRG-TNCPILPGTNWTYRFQVKDQIGSY 123 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccC--CCCC---Cc---------CCCCC-CcCCCCCCCcEEEEEEeCCCCceE
Confidence 788999999999999987788899999762 1111 10 00111 12358899999999998 589999
Q ss_pred EEEeeehhhhccCceEEEEEEcCc
Q 020366 280 NMRSAIWERQYLGQQFYLKVWNAV 303 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~~~~ 303 (327)
.||||...+...||...+.|.++.
T Consensus 124 WYHsH~~~Q~~~GL~G~lII~~~~ 147 (545)
T PLN02168 124 FYFPSLLLQKAAGGYGAIRIYNPE 147 (545)
T ss_pred EEecChhhhhhCcceeEEEEcCCc
Confidence 999999888889999999887553
No 32
>PLN02835 oxidoreductase
Probab=97.67 E-value=0.0002 Score=71.24 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=66.8
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEe-cCCeee
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL-DNQGMW 279 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a-dnpG~W 279 (327)
++++.|++|++.+.|.-....-+|.||....--....| .+- ----|+||+...-+|.+ |.+|.+
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DG--------------v~~-tQ~pI~PG~sf~Y~F~~~~q~GT~ 126 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDG--------------VLG-TNCPIPPNSNYTYKFQTKDQIGTF 126 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCC--------------Ccc-CcCCCCCCCcEEEEEEECCCCEeE
Confidence 78899999999999998888899999987311000011 011 11247899999999986 689999
Q ss_pred EEEeeehhhhccCceEEEEEEcC
Q 020366 280 NMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
.||||...+...||...+.|.++
T Consensus 127 WYHsH~~~q~~~Gl~G~lIV~~~ 149 (539)
T PLN02835 127 TYFPSTLFHKAAGGFGAINVYER 149 (539)
T ss_pred EEEeCccchhcCcccceeEEeCC
Confidence 99999988889999999998643
No 33
>PRK10965 multicopper oxidase; Provisional
Probab=97.50 E-value=0.00041 Score=68.86 Aligned_cols=85 Identities=11% Similarity=0.103 Sum_probs=66.4
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecC-Cee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-QGM 278 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adn-pG~ 278 (327)
+++++.|+.|++.+.|.-....-+|+||.+.- +...|. | -..|+||+....+|.++. +|.
T Consensus 78 tIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~--~~~DG~-------------p----q~~I~PG~s~~Y~f~~~q~aGT 138 (523)
T PRK10965 78 AVRLQRGKAVTVDITNQLPEETTLHWHGLEVP--GEVDGG-------------P----QGIIAPGGKRTVTFTVDQPAAT 138 (523)
T ss_pred eEEEECCCEEEEEEEECCCCCccEEcccccCC--CccCCC-------------C----CCCCCCCCEEEEEeccCCCCce
Confidence 37889999999999999888889999998731 111120 1 124778999999999986 599
Q ss_pred eEEEeee----hhhhccCceEEEEEEcCc
Q 020366 279 WNMRSAI----WERQYLGQQFYLKVWNAV 303 (327)
Q Consensus 279 W~~HCHi----~~h~~~Gm~~~~~v~~~~ 303 (327)
+-||||. ..+...||...+.|.++.
T Consensus 139 ~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~ 167 (523)
T PRK10965 139 CWFHPHQHGKTGRQVAMGLAGLVLIEDDE 167 (523)
T ss_pred EEEecCCCCCcHHHHhCcCeEEEEEcCcc
Confidence 9999996 567788999999987654
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.44 E-value=0.00046 Score=69.19 Aligned_cols=87 Identities=10% Similarity=-0.009 Sum_probs=68.3
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEe-cCCeee
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL-DNQGMW 279 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a-dnpG~W 279 (327)
++++.|++|++.+.|.-....-+|.||.+..--....| ++. ..--|+||+...-+|.+ |.+|.+
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DG--------------v~~-TQcPI~PG~sftY~F~~~dq~GT~ 126 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDG--------------VGG-TNCAIPAGWNWTYQFQVKDQVGSF 126 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccC--------------CCC-CcCCcCCCCcEEEEEEeCCCCcee
Confidence 67889999999999998778889999977322111112 111 22367899999999999 689999
Q ss_pred EEEeeehhhhccCceEEEEEEcC
Q 020366 280 NMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
.||+|...+...||-.++.|..+
T Consensus 127 WYHsH~~~Q~~~Gl~GalII~~~ 149 (596)
T PLN00044 127 FYAPSTALHRAAGGYGAITINNR 149 (596)
T ss_pred EeeccchhhhhCcCeeEEEEcCc
Confidence 99999988889999999988654
No 35
>PRK10883 FtsI repressor; Provisional
Probab=97.43 E-value=0.0008 Score=66.04 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=63.3
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEec-CCee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD-NQGM 278 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad-npG~ 278 (327)
.++++.|+.|++.+.|.-....-+|+||.+.- +...| .+. ..|+||+....+|..+ .+|.
T Consensus 78 tir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~--~~~~~-------------g~~----~~I~PG~~~~y~f~~~~~aGT 138 (471)
T PRK10883 78 TIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVP--GPLMG-------------GPA----RMMSPNADWAPVLPIRQNAAT 138 (471)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeECCccCC--CCCCC-------------Ccc----ccCCCCCeEEEEEecCCCcee
Confidence 37889999999999999888888999998621 11011 111 1378899888999876 4899
Q ss_pred eEEEeeeh----hhhccCceEEEEEEcCc
Q 020366 279 WNMRSAIW----ERQYLGQQFYLKVWNAV 303 (327)
Q Consensus 279 W~~HCHi~----~h~~~Gm~~~~~v~~~~ 303 (327)
+.||||.. .+...||...+.|.++.
T Consensus 139 ~WYH~H~~~~t~~qv~~GL~G~lII~d~~ 167 (471)
T PRK10883 139 CWYHANTPNRMAQHVYNGLAGMWLVEDEV 167 (471)
T ss_pred eEEccCCCCchhhhHhcCCeEEEEEeCCc
Confidence 99999962 24567999999887654
No 36
>PLN02792 oxidoreductase
Probab=97.42 E-value=0.00039 Score=69.09 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=65.4
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEe-cCCeee
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL-DNQGMW 279 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a-dnpG~W 279 (327)
++++.|+.|++.+.|.-....-+|.||.+..--....| .+. -.--|+||+...-+|.+ |.+|.+
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DG--------------v~~-tqcPI~PG~sftY~F~~~~q~GT~ 113 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDG--------------VYG-TTCPIPPGKNYTYDFQVKDQVGSY 113 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCC--------------CCC-CcCccCCCCcEEEEEEeCCCccce
Confidence 78899999999999998788889999987311000111 111 12357899999999998 589999
Q ss_pred EEEeeehhhhccCceEEEEEEcC
Q 020366 280 NMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
.||||...+...||...+.|.++
T Consensus 114 WYHsH~~~q~~~Gl~G~liI~~~ 136 (536)
T PLN02792 114 FYFPSLAVQKAAGGYGSLRIYSL 136 (536)
T ss_pred EEecCcchhhhcccccceEEeCC
Confidence 99999987777888888877643
No 37
>PLN02354 copper ion binding / oxidoreductase
Probab=97.37 E-value=0.00038 Score=69.48 Aligned_cols=87 Identities=13% Similarity=0.021 Sum_probs=66.3
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEe-cCCeee
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL-DNQGMW 279 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a-dnpG~W 279 (327)
++++.|++|++.+.|.-...--+|.||....--....| ++. ----|+||+...-+|.+ |.+|.+
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DG--------------v~~-TQcpI~PG~sf~Y~F~~~~q~GT~ 124 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDG--------------VPG-TNCPIPPGTNFTYHFQPKDQIGSY 124 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCC--------------CcC-CcCCCCCCCcEEEEEEeCCCCcce
Confidence 78899999999999987666679999977322111112 111 12358899999999998 689999
Q ss_pred EEEeeehhhhccCceEEEEEEcC
Q 020366 280 NMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
.||||...+...||...+.|..+
T Consensus 125 WYHsH~~~Q~~~Gl~G~lII~~~ 147 (552)
T PLN02354 125 FYYPSTGMHRAAGGFGGLRVNSR 147 (552)
T ss_pred EEecCccceecCCccceEEEcCC
Confidence 99999988888899999988654
No 38
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=97.36 E-value=0.0023 Score=63.91 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=61.1
Q ss_pred EEEecCCcEEEEEEEeCCC-CcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEe--cCC
Q 020366 200 VMQVNLHEYIEVVFQNNEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL--DNQ 276 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~-~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a--dnp 276 (327)
.+++..|+.|++.+.|.-. ...-+|.||....--....|. +..-.--|+||+...-+|.+ +.+
T Consensus 40 ~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGv--------------p~vTQcpI~PG~sf~Y~f~~~~~q~ 105 (538)
T TIGR03390 40 EIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGT--------------PLASQWPIPPGHFFDYEIKPEPGDA 105 (538)
T ss_pred eEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCC--------------cccccCCCCCCCcEEEEEEecCCCC
Confidence 3788999999999999853 678899999874221111120 00011147899999999987 479
Q ss_pred eeeEEEeeehhhhccCceEEEEEEcC
Q 020366 277 GMWNMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 277 G~W~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
|.+.||||..... .||...+.|.++
T Consensus 106 GT~WYHsH~~~Q~-~~l~G~lIV~~~ 130 (538)
T TIGR03390 106 GSYFYHSHVGFQA-VTAFGPLIVEDC 130 (538)
T ss_pred eeeEEecCCchhh-hcceeEEEEccC
Confidence 9999999985543 467777777543
No 39
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.29 E-value=0.0013 Score=50.79 Aligned_cols=62 Identities=10% Similarity=0.184 Sum_probs=43.1
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
.++++.|+.|.+++.|.+...|-|.+-+. ..+ ..|++|+...+.|.++.||.+
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~~--------------------------~~~-~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPDL--------------------------GIS-KVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGGG--------------------------TEE-EEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECCC--------------------------ceE-EEECCCCEEEEEEcCCCCEEE
Confidence 47899999999999999887665555441 122 577888999999999999999
Q ss_pred EEEeeehhhhc
Q 020366 280 NMRSAIWERQY 290 (327)
Q Consensus 280 ~~HCHi~~h~~ 290 (327)
-|+|-+ |..
T Consensus 89 ~~~C~~--~~~ 97 (104)
T PF13473_consen 89 EFYCTM--HPN 97 (104)
T ss_dssp EEB-SS--S-T
T ss_pred EEEcCC--CCc
Confidence 999998 665
No 40
>PLN02991 oxidoreductase
Probab=97.00 E-value=0.0022 Score=63.83 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=65.1
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEe-cCCeee
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL-DNQGMW 279 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~a-dnpG~W 279 (327)
+.+..|+.|++.+.|.-...--+|.||....=-....|. |. ----|+||+..+-+|.+ +.+|.+
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv-------------~~--tQcpI~PG~sftY~F~~~~q~GT~ 125 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGV-------------YG--TTCPIPPGKNYTYALQVKDQIGSF 125 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCC-------------CC--CCCccCCCCcEEEEEEeCCCCcce
Confidence 788999999999999977777899999873110000110 11 12357899999999999 589999
Q ss_pred EEEeeehhhhccCceEEEEEEcC
Q 020366 280 NMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
.||+|...+...|+...+.|.++
T Consensus 126 WYHsH~~~q~~~Gl~G~lIV~~~ 148 (543)
T PLN02991 126 YYFPSLGFHKAAGGFGAIRISSR 148 (543)
T ss_pred EEecCcchhhhCCCeeeEEEeCC
Confidence 99999977777788888887654
No 41
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.91 E-value=0.0053 Score=61.28 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=55.7
Q ss_pred EEEecCCcEEEEEEEeCC---CCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCC
Q 020366 200 VMQVNLHEYIEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQ 276 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~---~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnp 276 (327)
-++++.|+.|.|.+.|.+ +..|-|.+-++... +.+.||....+.|+++.|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~---------------------------~dv~PG~t~svtF~adkP 608 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN---------------------------MEVAPQATASVTFTADKP 608 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCcc---------------------------EEEcCCceEEEEEEcCCC
Confidence 467899999999999974 45666666443311 245578889999999999
Q ss_pred eeeEEEeeehhh-hccCceEEEEEE
Q 020366 277 GMWNMRSAIWER-QYLGQQFYLKVW 300 (327)
Q Consensus 277 G~W~~HCHi~~h-~~~Gm~~~~~v~ 300 (327)
|.|.+||...-+ .|.+|...+.|.
T Consensus 609 Gvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 609 GVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred EEEEEECCcccccCcccceEEEEEE
Confidence 999999987443 366888888774
No 42
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.65 E-value=0.027 Score=42.98 Aligned_cols=81 Identities=9% Similarity=0.004 Sum_probs=54.0
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCcc-ccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAE-KRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~-~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
.+.++.|++|.|+.. +...|.+.+=- + .+... ..... +..-.+..+.+|....+.|. .||.
T Consensus 18 ~i~V~~G~tV~~~n~--~~~~Hnv~~~~--------~--~~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~--~~G~ 79 (99)
T PF00127_consen 18 EITVKAGDTVTFVNN--DSMPHNVVFVA--------D--GMPAGADSDYV----PPGDSSPLLAPGETYSVTFT--KPGT 79 (99)
T ss_dssp EEEEETTEEEEEEEE--SSSSBEEEEET--------T--SSHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--SSEE
T ss_pred EEEECCCCEEEEEEC--CCCCceEEEec--------c--ccccccccccc----CccccceecCCCCEEEEEeC--CCeE
Confidence 478999999988755 55666654422 1 11000 00000 11116667888888888876 9999
Q ss_pred eEEEeeehhhhccCceEEEEEE
Q 020366 279 WNMRSAIWERQYLGQQFYLKVW 300 (327)
Q Consensus 279 W~~HCHi~~h~~~Gm~~~~~v~ 300 (327)
+.|+|-. |..+||-..++|.
T Consensus 80 y~y~C~P--H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 80 YEYYCTP--HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEETT--TGGTTSEEEEEEE
T ss_pred EEEEcCC--CcccCCEEEEEEC
Confidence 9999994 9999999999873
No 43
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=96.58 E-value=0.013 Score=47.23 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=55.9
Q ss_pred CeeEEecCCCcEEEEEEeCCeEEEEEecCccc-----------eeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEe
Q 020366 1 MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 67 (327)
Q Consensus 1 RlRliNa~~~~~~~~sidgh~l~VIa~DG~~v-----------~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~ 67 (327)
||+|+|.+.. ..-|+|-||.+.|++.++... +|...|.+.|.+|++..+.++++ .+|.|-+....
T Consensus 45 ~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~-~~G~w~~HCHi 120 (138)
T PF07731_consen 45 EIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD-NPGPWLFHCHI 120 (138)
T ss_dssp EEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-STEEEEEEESS
T ss_pred EEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-cceEEEEEEch
Confidence 5789997655 889999999999999999884 58889999999999999999998 57877666553
No 44
>PRK02710 plastocyanin; Provisional
Probab=96.48 E-value=0.02 Score=45.31 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=49.8
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeE
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 280 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~ 280 (327)
++++.|++|+|+ |.+...|-+.+.|.. .+ ..+| ..+.+|+...+.|.. ||.+-
T Consensus 49 i~v~~Gd~V~~~--N~~~~~H~v~~~~~~---------~~-------------~~~~-~~~~pg~t~~~tF~~--~G~y~ 101 (119)
T PRK02710 49 LTIKAGDTVKWV--NNKLAPHNAVFDGAK---------EL-------------SHKD-LAFAPGESWEETFSE--AGTYT 101 (119)
T ss_pred EEEcCCCEEEEE--ECCCCCceEEecCCc---------cc-------------cccc-cccCCCCEEEEEecC--CEEEE
Confidence 688999998875 767778887654321 00 0111 345677777777765 99999
Q ss_pred EEeeehhhhccCceEEEEE
Q 020366 281 MRSAIWERQYLGQQFYLKV 299 (327)
Q Consensus 281 ~HCHi~~h~~~Gm~~~~~v 299 (327)
|+|=. |...||-..+.|
T Consensus 102 y~C~~--H~~~gM~G~I~V 118 (119)
T PRK02710 102 YYCEP--HRGAGMVGKITV 118 (119)
T ss_pred EEcCC--CccCCcEEEEEE
Confidence 99986 988999998887
No 45
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=96.30 E-value=0.025 Score=44.54 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCCEEEEEEEecCCeeeEEEeeehhhhccCceEEEEEEcCcccc
Q 020366 263 PQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSL 306 (327)
Q Consensus 263 ~~g~~virf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~~~~~~~ 306 (327)
+++...+.| +.||.+-|+|=. |..+||-..++|+++...+
T Consensus 54 ~g~~~~~tF--~~~G~Y~Y~C~p--H~~~GM~G~V~Vg~~~~n~ 93 (116)
T TIGR02375 54 INEEYTVTV--TEEGVYGVKCTP--HYGMGMVALIQVGDPPANL 93 (116)
T ss_pred CCCEEEEEe--CCCEEEEEEcCC--CccCCCEEEEEECCCCcCH
Confidence 455555444 789999999998 9999999999998864443
No 46
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.45 E-value=0.093 Score=52.47 Aligned_cols=88 Identities=15% Similarity=0.017 Sum_probs=66.5
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEec-CCeee
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD-NQGMW 279 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~ad-npG~W 279 (327)
+.+..|+.|.+.+.|.....=-+|.||-+..=-....|. +-... -|+||+..+=+|.++ ..|.+
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG~--------~~TqC-------PI~Pg~~~tY~F~v~~q~GT~ 125 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDGV--------YITQC-------PIQPGENFTYRFTVKDQIGTL 125 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccCC--------ccccC-------CcCCCCeEEEEEEeCCcceeE
Confidence 678899999999999977667799999874322222221 11111 357899999999986 99999
Q ss_pred EEEeeehhhhccCceEEEEEEcCc
Q 020366 280 NMRSAIWERQYLGQQFYLKVWNAV 303 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v~~~~ 303 (327)
+||-|...+-..|+-.+|.|..+.
T Consensus 126 ~yh~h~~~~Ra~G~~G~liI~~~~ 149 (563)
T KOG1263|consen 126 WYHSHVSWQRATGVFGALIINPRP 149 (563)
T ss_pred EEeeccccccccCceeEEEEcCCc
Confidence 999999888899888888876543
No 47
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.92 E-value=0.22 Score=36.58 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=44.5
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
.+.+..|++|.| .|.+...|-.+.+...+ +..+ +. ...+.++.... |..+.||.+
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~~-~~~~~~g~~~~--~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------LK-GPMMKKEQAYS--LTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------cc-ccccCCCCEEE--EECCCCEEE
Confidence 378899999987 47777888887654221 1100 01 11233444444 566889999
Q ss_pred EEEeeehhhhccCceEEEEE
Q 020366 280 NMRSAIWERQYLGQQFYLKV 299 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v 299 (327)
.|||=+ |- .|-..+.|
T Consensus 67 ~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEcCC--CC--CCeEEEEE
Confidence 999998 65 37666655
No 48
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.12 E-value=0.19 Score=49.19 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=60.7
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeE
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 280 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~ 280 (327)
+.++.|++|++.+.|.-...=-+|.|| +.+=....|. .-.....+.++.+....|..+-||...
T Consensus 66 i~~~~Gd~v~l~~~N~l~~~t~vh~HG--~~~p~~~dG~--------------~~~~~~~~~~~~~~~y~f~~~~~gT~w 129 (451)
T COG2132 66 IRVKKGDTVTLDLTNRLLVDTSVHWHG--LPVPGEMDGV--------------PPLTQIPPGPGETPTYTFTQDVPGTYW 129 (451)
T ss_pred EEEecCCEEEEEEEeCCCCCceEEEcC--cccCccccCC--------------CcccccCCCCCCcEEEeecCCCCcceE
Confidence 688999999999999854445699999 3332221220 112334455677788999999999777
Q ss_pred EEeeehhhhccCceEEEEEEcC
Q 020366 281 MRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 281 ~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
||-|-.....+||..++.|...
T Consensus 130 yh~H~~~Q~~~Gl~G~~II~~~ 151 (451)
T COG2132 130 YHPHTHGQVYDGLAGALIIEDE 151 (451)
T ss_pred eccCCCchhhcccceeEEEeCC
Confidence 8888755677888888887644
No 49
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=94.00 E-value=0.62 Score=36.60 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=46.6
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
.++++.|++|.|+-++ +...|-.. +.+.+.|+.. .....+++...+.| +.||.+
T Consensus 43 ~ltV~~GdTVtw~~~~-d~~~HnV~---------s~~~~~f~s~--------------~~~~~~G~t~s~Tf--~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTG-EGGGHNVV---------SDGDGDLDES--------------ERVSEEGTTYEHTF--EEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEECC-CCCCEEEE---------ECCCCCcccc--------------ccccCCCCEEEEEe--cCCcEE
Confidence 3689999999987433 23444432 2222333211 11223455555555 789999
Q ss_pred EEEeeehhhhccCceEEEEE
Q 020366 280 NMRSAIWERQYLGQQFYLKV 299 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~~~~~v 299 (327)
.|+|=. |..+||-..++|
T Consensus 97 ~Y~C~p--H~~~gM~G~I~V 114 (115)
T TIGR03102 97 LYVCVP--HEALGMKGAVVV 114 (115)
T ss_pred EEEccC--CCCCCCEEEEEE
Confidence 999998 999999999987
No 50
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=93.97 E-value=0.37 Score=41.79 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=54.6
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.++.|+.|++.+++.+-. | .|+|-+-+ + .+| +-||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~-H-------sf~ip~~~-~----------------k~d---a~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI-H-------SFWVPELG-G----------------KID---AIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh-h-------cccccccC-c----------------eEE---ecCCcEEEEEEEeCCCEE
Confidence 347899999999999987643 3 55553322 1 233 346777889999999999
Q ss_pred eEEEeeehhh-hccCceEEEEEEcC
Q 020366 279 WNMRSAIWER-QYLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h-~~~Gm~~~~~v~~~ 302 (327)
+...|.-.-. .|..|...+.|.++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECH
Confidence 9999987442 36678888887654
No 51
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=93.44 E-value=1.5 Score=34.35 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=27.5
Q ss_pred CeeEEecCC-CcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEE
Q 020366 1 MFRISNVGL-STSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVT 53 (327)
Q Consensus 1 RlRliNa~~-~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~ 53 (327)
++|+||++. ...+.+.+||-. +..+=.| ....+.+.+.+|. |.|-|+
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~---~~~~v~y--~~~s~Y~~v~~G~-~~i~v~ 50 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK---VFSNVAY--GQASDYLPVPPGT-YTIEVT 50 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE---EEccCCC--CcccCceEECCce-EEEEEE
Confidence 589999998 578888887755 1111111 1123455666665 555554
No 52
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.40 E-value=0.3 Score=40.02 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=65.3
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeE
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 280 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~ 280 (327)
+.++.|++++.++.|....-|=|-+= ++...- +.+.... ...-..---..++.|.||....|-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~--~~~~~~~--~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNL--EHVTHMI--LADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccc--hhHHHhh--hCCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 57889999999999998877765544 111111 1111000 0000001234688999999999999999999999
Q ss_pred EEeeehhhhccCceEEEEE
Q 020366 281 MRSAIWERQYLGQQFYLKV 299 (327)
Q Consensus 281 ~HCHi~~h~~~Gm~~~~~v 299 (327)
|-|-|-.|-+.||-.-++|
T Consensus 138 ~~C~iPGHy~AGM~g~itV 156 (158)
T COG4454 138 FACNIPGHYEAGMVGEITV 156 (158)
T ss_pred EEecCCCcccCCcEEEEEe
Confidence 9999999999999998887
No 53
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.21 E-value=1.4 Score=34.79 Aligned_cols=73 Identities=8% Similarity=0.059 Sum_probs=51.0
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.++.|+.|.+.+++. +..|.|.+-+...++ .+-||....+.|.++.||.
T Consensus 46 ~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~k~---------------------------d~~PG~~~~~~~~~~~~G~ 97 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE-DVIHSFWIPELGIKM---------------------------DAIPGRTNSVTFTPDKPGT 97 (120)
T ss_dssp SEEEEETTSEEEEEEEES-SS-EEEEETTCTEEE---------------------------EEBTTCEEEEEEEESSSEE
T ss_pred ceecccccceEeEEEEcC-CccccccccccCccc---------------------------ccccccceeeeeeeccCCc
Confidence 457899999999999985 455766665544332 2345677788999999999
Q ss_pred eEEEeeehh-hhccCceEEEEE
Q 020366 279 WNMRSAIWE-RQYLGQQFYLKV 299 (327)
Q Consensus 279 W~~HCHi~~-h~~~Gm~~~~~v 299 (327)
+-..|...= .-|..|-..+.|
T Consensus 98 y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 98 YYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp EEEEE-SSSSTTGGG-EEEEEE
T ss_pred EEEcCccccCcCcCCCeEEEEE
Confidence 999999754 335557776665
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=91.38 E-value=1.5 Score=35.01 Aligned_cols=72 Identities=11% Similarity=-0.013 Sum_probs=44.6
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeE
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 280 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~ 280 (327)
++++.|++|+|+ |.+...|-.+.=+-. . |..-+++..-.+.....-| +-||.+.
T Consensus 56 v~v~pGDTVtw~--~~d~~~Hnv~~~~~~---------~-------------~~g~~~~~~~~~~s~~~Tf--e~~G~Y~ 109 (128)
T COG3794 56 VTVKPGDTVTWV--NTDSVGHNVTAVGGM---------D-------------PEGSGTLKAGINESFTHTF--ETPGEYT 109 (128)
T ss_pred EEECCCCEEEEE--ECCCCCceEEEeCCC---------C-------------cccccccccCCCcceEEEe--cccceEE
Confidence 678999999987 555556654322211 1 1111222222234444444 4499999
Q ss_pred EEeeehhhhccCceEEEEEE
Q 020366 281 MRSAIWERQYLGQQFYLKVW 300 (327)
Q Consensus 281 ~HCHi~~h~~~Gm~~~~~v~ 300 (327)
|.|-. |.-+||-..+.|.
T Consensus 110 Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 110 YYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred EEecc--CCCCCcEEEEEeC
Confidence 99999 9999999988875
No 55
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=87.88 E-value=3.1 Score=37.31 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=54.5
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+-+.++.|+.|++.++..|-+ |.|||-+-| + .+| +-||-...+.+.++.||.
T Consensus 137 n~l~lPv~~~V~f~ltS~DVi--------HsF~IP~l~-~----------------k~d---~iPG~~~~~~~~~~~~G~ 188 (247)
T COG1622 137 NELVLPVGRPVRFKLTSADVI--------HSFWIPQLG-G----------------KID---AIPGMTTELWLTANKPGT 188 (247)
T ss_pred ceEEEeCCCeEEEEEEechhc--------eeEEecCCC-c----------------eee---ecCCceEEEEEecCCCeE
Confidence 347899999999999887543 466775544 1 122 234566788899999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcCcc
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNAVH 304 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~~~ 304 (327)
+-.+|+..-.. |..|-..+.|..+++
T Consensus 189 Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 189 YRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 99999986633 556777777665433
No 56
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=84.29 E-value=4 Score=36.06 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=54.4
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
-+.++.|+.|++.++..|-. |+|||-+-+ .++|.+ ||-...+.|.+|.||.+
T Consensus 140 el~lP~g~pV~~~ltS~DVi--------HSF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVM--------NSFFIPQLG-----------------SQIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECchh--------hhhhhhhcC-----------------CeeecC---CCceEEEEEEeCCCEEE
Confidence 36889999999999987644 467775543 234544 56667888999999999
Q ss_pred EEEeeehhhh-ccCceEEEEEEcC
Q 020366 280 NMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 280 ~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
.-.|--.-.. |..|...+.+..+
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECH
Confidence 9999864433 5667777776554
No 57
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=83.34 E-value=7.1 Score=34.54 Aligned_cols=76 Identities=7% Similarity=0.011 Sum_probs=53.7
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.++.|+.|++.+++.|-. |.|+|-+-| ...|. -||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~ts~DVi--------Hsf~ip~~~-----------------~k~d~---~Pg~~~~~~~~~~~~g~ 191 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADVI--------HSWTVPSLG-----------------VKVDA---IPGRLNQLSFEPKRPGV 191 (228)
T ss_pred CeEEEeeCcEEEEEEEcCccc--------cceeccccC-----------------ceeEC---CCCcceeEEEEeCCCEE
Confidence 457899999999999997644 456664333 11232 25666778889999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+...|.-.-.. |..|-..++|..+
T Consensus 192 y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 192 FYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEECccccCcCcCCCeEEEEEECH
Confidence 99999875533 6668777777654
No 58
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=81.04 E-value=15 Score=26.79 Aligned_cols=63 Identities=16% Similarity=0.295 Sum_probs=26.4
Q ss_pred eeEEecCCCcEEEEEEe-CCe--EEEEEecCcccee--------eEeeEEEEcCCceEEEEEEeCCC---CCceEEEE
Q 020366 2 FRISNVGLSTSFNFRIQ-GHT--MKLVEVEGSHTIQ--------NIYDSLDVHVGQSVSVLVTLNQP---PKDYYIVA 65 (327)
Q Consensus 2 lRliNa~~~~~~~~sid-gh~--l~VIa~DG~~v~P--------~~v~~l~l~~GqRydvlv~~~~~---~~~y~ir~ 65 (327)
|++.|.+. ..+.|.+. |++ +.|.-.+|..|-- +......|.|||...+-.+.+.. +|.|.+.+
T Consensus 6 l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 6 LTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 55666663 34455552 443 3333335554421 12456666666666666666542 45666543
No 59
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=79.38 E-value=23 Score=30.42 Aligned_cols=95 Identities=13% Similarity=-0.022 Sum_probs=58.0
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCcc-----c-cccCCCCCCCceeeEEeCCCCEEEEEEEec
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAE-----K-RRTYNLADTLTRHTAQVYPQSWTVILVSLD 274 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~-----~-~~~~n~~~p~~rDTv~vp~~g~~virf~ad 274 (327)
+.++.|-.|.+.+.|.+.+.| .|-|+..+....... . ...+--..+.--..-=|++|.....-|.+-
T Consensus 88 i~VPAGw~V~i~f~N~~~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l 160 (196)
T PF06525_consen 88 IYVPAGWNVQITFTNQESLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDL 160 (196)
T ss_pred EEEcCCCEEEEEEEcCCCCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccC
Confidence 568999999999999876665 567775543211100 0 000000001000000123455554455566
Q ss_pred CCeeeEEEeeehhhhccCceEEEEEEcC
Q 020366 275 NQGMWNMRSAIWERQYLGQQFYLKVWNA 302 (327)
Q Consensus 275 npG~W~~HCHi~~h~~~Gm~~~~~v~~~ 302 (327)
.||.+.|=|-+..|...||-..+.|...
T Consensus 161 ~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 161 PAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred CCceEEEEccCCChhhcCCEEEEEEecC
Confidence 8999999999999999999999998754
No 60
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=79.17 E-value=21 Score=30.73 Aligned_cols=76 Identities=9% Similarity=0.093 Sum_probs=53.6
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.++.|+.|++.+...|- .| .|+|-+-| ..+|.+ ||-...+.|.++-||.
T Consensus 116 ~~l~lp~g~~v~~~ltS~DV-iH-------sf~vp~l~-----------------~k~d~~---PG~~~~~~~~~~~~G~ 167 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSDV-IH-------SFSVPDLN-----------------LKMDAI---PGRINHLFFCPDRHGV 167 (194)
T ss_pred ceEEEeCCCEEEeeeecCcc-cc-------ceeccccC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 34678999999999987653 34 45553332 123433 5667788999999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+-.-|.-.-.. |..|-..+.|.++
T Consensus 168 y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 168 FVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred EEEEeehhhCcCcccCcEEEEEEcC
Confidence 99999975533 6668877777654
No 61
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=79.04 E-value=15 Score=30.62 Aligned_cols=76 Identities=9% Similarity=0.060 Sum_probs=50.2
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.++.|..|++.++..+-. |. |+|-+.| ...|.+ ||-...+.|.++.||.
T Consensus 73 n~LvLP~g~~Vr~~lTS~DVI-HS-------F~VP~lg-----------------vK~Dav---PGr~n~l~~~~~~~G~ 124 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDVI-HS-------WSVPSLG-----------------IKADAI---PGRLHKINTFILREGV 124 (162)
T ss_pred CCEEEeCCCEEEEEEEeCccc-ee-------eeccccC-----------------ceeecc---CCceEEEEEecCCCeE
Confidence 346789999999999877544 54 4443332 123332 4455567888999999
Q ss_pred eEEEeeehhh-hccCceEEEEEEcC
Q 020366 279 WNMRSAIWER-QYLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h-~~~Gm~~~~~v~~~ 302 (327)
+...|.-+-. -|..|-..+.+..+
T Consensus 125 y~gqCsElCG~gHs~M~~~V~vvs~ 149 (162)
T PTZ00047 125 FYGQCSEMCGTLHGFMPIVVEAVSP 149 (162)
T ss_pred EEEEcchhcCcCccCceEEEEEeCH
Confidence 9999997543 25557666665543
No 62
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=77.02 E-value=12 Score=32.89 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=55.2
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeE
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 280 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~ 280 (327)
+.++.|+.|++.++..|-. |+|+|=+-+ .++|.+ ||-...+.|.++-||.+-
T Consensus 132 l~iP~g~~v~~~ltS~DVi--------Hsf~vP~l~-----------------~k~dai---PG~~~~~~~~~~~~G~y~ 183 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSADTM--------TSFWIPQLG-----------------GQKYAM---TGMTMNWYLQADQVGTYR 183 (217)
T ss_pred EEEECCCEEEEEEECCchh--------hhhhchhhC-----------------ceeecC---CCceEEEEEEeCCCEEEE
Confidence 6789999999999987643 477774433 245654 566778899999999999
Q ss_pred EEeeehhhh-ccCceEEEEEEcCc
Q 020366 281 MRSAIWERQ-YLGQQFYLKVWNAV 303 (327)
Q Consensus 281 ~HCHi~~h~-~~Gm~~~~~v~~~~ 303 (327)
-.|--.-.. |..|...+.+..++
T Consensus 184 g~Cae~CG~~Hs~M~~~v~v~~~~ 207 (217)
T TIGR01432 184 GRNANFNGEGFADQTFDVNAVSEK 207 (217)
T ss_pred EEehhhcCccccCCeEEEEEeCHH
Confidence 999764433 66688777776553
No 63
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=72.41 E-value=20 Score=31.76 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=54.9
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.+|.|+.|++.++..+-. |.|+|-+-| + ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~-~----------------k~da~---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDVL--------HSWAVPALG-V----------------KMDAV---PGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCccc--------cceeccccC-C----------------ccccC---CCceEEEEEEeCCceE
Confidence 457899999999999988754 678886554 1 23332 5666677889999999
Q ss_pred eEEEeeehhh-hccCceEEEEEEcC
Q 020366 279 WNMRSAIWER-QYLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h-~~~Gm~~~~~v~~~ 302 (327)
+-..|.-.-. .|..|-..+++..+
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECH
Confidence 9999987443 36667777776644
No 64
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=71.51 E-value=62 Score=27.53 Aligned_cols=93 Identities=12% Similarity=-0.027 Sum_probs=56.3
Q ss_pred EEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCcc-----ccccCCC--CCCCceeeEEeCCCCEEEEEEEe
Q 020366 201 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAE-----KRRTYNL--ADTLTRHTAQVYPQSWTVILVSL 273 (327)
Q Consensus 201 ~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~-----~~~~~n~--~~p~~rDTv~vp~~g~~virf~a 273 (327)
+-++.|-.|.+.+.|.+...| .+-|+..+.- +... +...+++ ..+.--..==+.+|.....-|.+
T Consensus 87 IyiPaGw~V~V~f~N~e~~pH-------nl~iv~n~t~-~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~ 158 (195)
T TIGR03094 87 IYLPAGWNVYVTFTNYESLPH-------NLKLLPNSTQ-TPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWND 158 (195)
T ss_pred EEEeCCCEEEEEEEcCCCCCc-------cEEEecCCCC-CCCccccccCceeEeecccccCccccccccccceeEEEecc
Confidence 568999999999999986664 5556555421 1100 0000000 00000000012234444555566
Q ss_pred cCCeeeEEEeeehhhhccCceEEEEEEc
Q 020366 274 DNQGMWNMRSAIWERQYLGQQFYLKVWN 301 (327)
Q Consensus 274 dnpG~W~~HCHi~~h~~~Gm~~~~~v~~ 301 (327)
--||.+.+=|=+.-|...||-..+.|..
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 7899999999999999999999998864
No 65
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=68.20 E-value=35 Score=30.19 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=52.5
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.+|.|+.|++.+++.|-. |.|+|-+-| + ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~~~-~----------------k~dai---PG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADVI--------HSWTVPSLG-V----------------KVDAV---PGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCCcc--------ccccccccC-c----------------ceecC---CCceEEEEEEeCCCEE
Confidence 457889999999999997644 456664443 1 22322 5566677889999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+..-|.-.-.. |..|-..+.+..+
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECH
Confidence 99999864433 6667777766544
No 66
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=67.21 E-value=38 Score=29.94 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=53.9
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.+|.|+.|++.++..|-. |.|+|-+-| .+.|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDVL--------HSWAVPSLG-----------------LKTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECccc--------ccccccccc-----------------cceecC---CCceEEEEEecCCcEE
Confidence 457899999999999988654 567774443 123432 5566678889999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+..-|.-.-.. |.-|-..+++..+
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCH
Confidence 99999874433 5567777766544
No 67
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=66.39 E-value=39 Score=29.89 Aligned_cols=76 Identities=11% Similarity=0.078 Sum_probs=53.3
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.+|.|+.|++.++..|-. |.|+|-+-| ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDVL--------HSWTVPALG-----------------VKMDAV---PGRLNQATFIISRPGL 191 (230)
T ss_pred CeEEEecCCEEEEEEEcCccc--------ccccccccC-----------------ceeEec---CCceEEEEEEeCCcEE
Confidence 457799999999999887654 567775543 123432 5566677888999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+.--|.-.-.. |.-|-..+.+..+
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (230)
T MTH00185 192 YYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEEchhhcCcCcCCCeEEEEEECH
Confidence 99999874433 5557777666543
No 68
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=64.18 E-value=19 Score=29.05 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=22.8
Q ss_pred EEEEcCCceEEEEEEeCCCCCceEEEEEe
Q 020366 39 SLDVHVGQSVSVLVTLNQPPKDYYIVAST 67 (327)
Q Consensus 39 ~l~l~~GqRydvlv~~~~~~~~y~ir~~~ 67 (327)
...|.+||+..+-+++++ +|.|+.....
T Consensus 93 s~~I~pGet~TitF~adK-pG~Y~y~C~~ 120 (135)
T TIGR03096 93 SEVIKAGETKTISFKADK-AGAFTIWCQL 120 (135)
T ss_pred ceEECCCCeEEEEEECCC-CEEEEEeCCC
Confidence 667999999999999886 6889876543
No 69
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=63.94 E-value=47 Score=29.33 Aligned_cols=76 Identities=8% Similarity=0.046 Sum_probs=54.2
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.++.|+.|++.++..|-. |.|+|-+-| .++|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~K~Dav---PG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDVL--------HSWAVPSLG-----------------VKTDAV---PGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecchh--------hcccccccC-----------------ceeEec---CCceEEEEEEEcccce
Confidence 557899999999999887655 567775443 234433 5666678899999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+.--|--+-.. |.-|-..+.+..+
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~ 216 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPL 216 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCH
Confidence 99999874433 5557766666543
No 70
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.81 E-value=39 Score=29.79 Aligned_cols=77 Identities=6% Similarity=0.058 Sum_probs=53.2
Q ss_pred eeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCe
Q 020366 198 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 277 (327)
Q Consensus 198 ~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG 277 (327)
.+.+.+|.|+.|++.++..|-. |.|+|=+-| .++|.+ ||-...+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G 190 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAADVL--------HSWTVPSLG-----------------VKIDAV---PGRLNQVGFFINRPG 190 (226)
T ss_pred CceEEEecCCEEEEEEecCccc--------cceeccccC-----------------ccccCC---CCcEEEEEEEcCCCE
Confidence 3557899999999999877543 466665443 234443 455567888999999
Q ss_pred eeEEEeeehhhh-ccCceEEEEEEcC
Q 020366 278 MWNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 278 ~W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
.+.--|--+-.. |.-|-..+.+..+
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 191 VFYGQCSEICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEEEChhhcCcCcCCCeEEEEEeCH
Confidence 999999864433 5557777766544
No 71
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=61.61 E-value=56 Score=29.12 Aligned_cols=76 Identities=9% Similarity=0.112 Sum_probs=52.2
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.+|.|+.|++.++..+- .| .|+|=+-| .++|.+ ||-...+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~DV-iH-------sf~iP~lg-----------------vK~Dai---PG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGADV-LH-------SFAVPSLG-----------------LKIDAV---PGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcCCc-cc-------ceeecccC-----------------ceeecC---CCcceeEEEEcCCCEE
Confidence 45789999999999987753 34 45554333 123432 3444567889999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+.-.|.-.-.. |.-|-..+++.++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECH
Confidence 99999875433 6667777776654
No 72
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=59.70 E-value=56 Score=28.85 Aligned_cols=76 Identities=7% Similarity=0.118 Sum_probs=52.5
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.+|.|+.|++.++..|- .| .|+|=+-| .++|.+ ||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DV-iH-------sf~vp~l~-----------------~k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV-IH-------SWTVPSLG-----------------VKVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCch-hh-------heeccccC-----------------CeeecC---CCceEEEEEEEcCceE
Confidence 45789999999999987754 33 56664433 234443 4556678899999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+.--|.-+-.. |.-|-..+.+..+
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~ 216 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSV 216 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCH
Confidence 99999875433 5557777766543
No 73
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=56.91 E-value=74 Score=28.10 Aligned_cols=76 Identities=8% Similarity=0.078 Sum_probs=51.5
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.+|.|..|++.++..|- .| .|+|-+-| .++|.+ ||-...+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-iH-------sf~iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSADV-LH-------SWAVPSLG-----------------VKMDAV---PGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECCc-cc-------cccccccC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 45789999999999987753 34 55553333 234433 4555677889999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+...|.-.-.. |.-|-..+.+..+
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCH
Confidence 99999875433 4457666665543
No 74
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=55.69 E-value=17 Score=26.62 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=11.9
Q ss_pred EEEEcCCceEEEEEE
Q 020366 39 SLDVHVGQSVSVLVT 53 (327)
Q Consensus 39 ~l~l~~GqRydvlv~ 53 (327)
.|....|||||++|.
T Consensus 17 ~l~f~sgq~~D~~v~ 31 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVK 31 (82)
T ss_dssp EEEESSS--EEEEEE
T ss_pred EEEeCCCCEEEEEEE
Confidence 788899999999998
No 75
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=55.19 E-value=48 Score=30.88 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=52.1
Q ss_pred EEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 200 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 200 ~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
-+.++.|+.|++.+...+-+ |+|||-+-+ | ..|.+ ||-...+.|.+|.||.+
T Consensus 152 eL~iP~g~pV~f~lTS~DVi--------HSF~IP~Lg-~----------------K~dam---PG~~n~l~~~a~~~G~Y 203 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM--------NSFFIPRLG-S----------------QIYAM---AGMQTRLHLIANEPGTY 203 (315)
T ss_pred cEEEecCCEEEEEEEEchhh--------hhhhhhhhC-C----------------eeecC---CCceeEEEEEcCCCEEE
Confidence 36789999999999987654 467775544 2 23432 45556788999999999
Q ss_pred EEEeeehhhh-ccCceEEEEEE
Q 020366 280 NMRSAIWERQ-YLGQQFYLKVW 300 (327)
Q Consensus 280 ~~HCHi~~h~-~~Gm~~~~~v~ 300 (327)
.-.|--.-.. |..|...+.+.
T Consensus 204 ~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 204 DGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEChhhcCccccCCeEEEEEE
Confidence 9999875533 55677776654
No 76
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=53.96 E-value=83 Score=22.85 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=25.2
Q ss_pred EecCccceeeEeeEE-EEcCCceEEEEEEeCC-CCCceEEEEEec
Q 020366 26 EVEGSHTIQNIYDSL-DVHVGQSVSVLVTLNQ-PPKDYYIVASTR 68 (327)
Q Consensus 26 a~DG~~v~P~~v~~l-~l~~GqRydvlv~~~~-~~~~y~ir~~~~ 68 (327)
-.||..+ ....| .|++|+...+-+.... .+|.|.|++...
T Consensus 43 ~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 43 YLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred EECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 3455554 33444 7889999888888764 467888877653
No 77
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=53.32 E-value=42 Score=25.66 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=42.0
Q ss_pred CcEEEEEEeCCeEEEEEecC---ccc--------eeeEeeEEEEcCCceEEEEEEeCCCCCceEEEEEeccc
Q 020366 10 STSFNFRIQGHTMKLVEVEG---SHT--------IQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFT 70 (327)
Q Consensus 10 ~~~~~~sidgh~l~VIa~DG---~~v--------~P~~v~~l~l~~GqRydvlv~~~~~~~~y~ir~~~~~~ 70 (327)
...-.+.|-|.+|.+.+.|. .+. .++..+.|...-..|..++|-++=+.|.|+|.+...+.
T Consensus 17 t~G~~~~I~G~~LKi~g~d~~~Gv~l~~~~~g~~~~v~~~~i~~N~ps~l~~~lPa~L~~G~Y~l~V~Tq~~ 88 (102)
T PF14734_consen 17 TPGGPVRITGSNLKIDGDDPSQGVFLVSDDEGTETKVPCSSIVRNKPSRLIFILPADLAAGEYTLEVRTQYS 88 (102)
T ss_pred cCCCeEEEEeeEEEEecCCCceEEEEEcCCCCceEEecHHHeEeCCCcEEEEECcCccCceEEEEEEEEEec
Confidence 33445666677777666663 222 34555678888899999999886678999999886543
No 78
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.21 E-value=78 Score=27.95 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=53.1
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.+|.|+.|++.++..|-. |.|+|=+-| .+.|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~k~da~---PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAEDVL--------HSWAVPSLG-----------------IKTDAI---PGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecccc--------ccccccccC-----------------ceEEcc---CCcceeEEEEeCCcEE
Confidence 457899999999999887654 566664443 123432 4555677889999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+-.-|.-.-.. |..|-..+++..+
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPL 216 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCH
Confidence 99999874433 6667777766543
No 79
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=52.25 E-value=86 Score=27.79 Aligned_cols=76 Identities=5% Similarity=-0.007 Sum_probs=52.3
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+...+|.|+.|++.++..|- .| +|+|=+-| .++|.+ ||-...+.|.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~DV-iH-------Sf~vP~lg-----------------~K~Dav---PGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSDV-IH-------SWALPSLS-----------------IKMDAM---SGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCcc-cc-------cccccccC-----------------ceeecc---CCceEEEEEEEcCceE
Confidence 44679999999999988764 33 55554433 133433 3445567889999999
Q ss_pred eEEEeeehhh-hccCceEEEEEEcC
Q 020366 279 WNMRSAIWER-QYLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h-~~~Gm~~~~~v~~~ 302 (327)
+.--|--.-. .|..|-..+.+..+
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~ 219 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLL 219 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECH
Confidence 9999986442 36668777776654
No 80
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.39 E-value=77 Score=28.69 Aligned_cols=76 Identities=5% Similarity=0.012 Sum_probs=52.5
Q ss_pred eEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCee
Q 020366 199 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 278 (327)
Q Consensus 199 ~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~ 278 (327)
+.+.+|.|..|++.++..+-. |.|+|=+-| ..+|.+ ||-.-.+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~DVi--------HSf~vP~lg-----------------vK~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAADVL--------HSWTVPSLA-----------------VKMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCccc--------cceeccccc-----------------CcccCC---CCceeeEEEEcCCcEE
Confidence 557899999999999877533 466664443 123332 3444567889999999
Q ss_pred eEEEeeehhhh-ccCceEEEEEEcC
Q 020366 279 WNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 279 W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
+.-.|+-.-.. |..|-..+++..+
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECH
Confidence 99999975533 6667777776544
No 81
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.54 E-value=1e+02 Score=27.39 Aligned_cols=77 Identities=8% Similarity=0.040 Sum_probs=52.3
Q ss_pred eeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCe
Q 020366 198 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 277 (327)
Q Consensus 198 ~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG 277 (327)
.+.+.++.|+.|++.+++.+-. |.|+|-+-| ...|.+ ||....+.|.++.||
T Consensus 143 dn~lvlP~~~~v~~~itS~DVi--------Hsf~vp~lg-----------------~k~dai---PG~~~~~~~~~~~~G 194 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAADVL--------HSFAVPSLS-----------------VKIDAV---PGRLNQTSFFIKRPG 194 (234)
T ss_pred ceEEEEecCcEEEEEEEeCchh--------ccccccccC-----------------ceeEcc---CCceEeEEEEeCCCE
Confidence 3557899999999999987544 456664443 123332 455567788999999
Q ss_pred eeEEEeeehhh-hccCceEEEEEEcC
Q 020366 278 MWNMRSAIWER-QYLGQQFYLKVWNA 302 (327)
Q Consensus 278 ~W~~HCHi~~h-~~~Gm~~~~~v~~~ 302 (327)
.+-.-|.-.-. .|.-|-..+.+..+
T Consensus 195 ~y~g~Cse~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 195 VFYGQCSEICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEEEChhhcCcccccCeeEEEEECH
Confidence 99999986432 25557777766544
No 82
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=50.27 E-value=41 Score=26.95 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=32.0
Q ss_pred CcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeeeEEEeeeh
Q 020366 219 TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIW 286 (327)
Q Consensus 219 ~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W~~HCHi~ 286 (327)
..|.+=+|-..||.+|+..| || +.|.+-+...=+|+||+.
T Consensus 74 ~LhSqPI~~IRvwGvGrdng-----------------rd-----------FA~vard~~T~~~~CHVF 113 (138)
T cd01272 74 VLHSQPIHTIRVWGVGRDNG-----------------RD-----------FAYVIRDERTRGSNCHVF 113 (138)
T ss_pred eEEeeeeeEEEEEEecCCCC-----------------cc-----------eEEEeecCCCceeEEEEE
Confidence 35888888999999988765 23 667788888899999983
No 83
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=49.55 E-value=46 Score=25.76 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=24.0
Q ss_pred CeeEEecCC-CcEEEEEEeCC-eEEEEEecCccceeeEeeEEEEcCCceEEEEEEeC
Q 020366 1 MFRISNVGL-STSFNFRIQGH-TMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLN 55 (327)
Q Consensus 1 RlRliNa~~-~~~~~~sidgh-~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~ 55 (327)
+|+|+|-+. ...|.++++|. .+.+. . ..+.+.|.+|+..++-|...
T Consensus 36 ~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 36 TLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEEE
Confidence 367777776 56677777764 23331 1 24678888998777666553
No 84
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.56 E-value=1.1e+02 Score=26.99 Aligned_cols=77 Identities=8% Similarity=0.051 Sum_probs=52.3
Q ss_pred eeEEEecCCcEEEEEEEeCCCCcCceeecCCCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCe
Q 020366 198 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 277 (327)
Q Consensus 198 ~~~~~~~~g~~v~ivi~N~~~~~HP~HLHG~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG 277 (327)
.+.+.++.|+.|++.++..|- . |.|+|=+-| .+.|.+ ||-...+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DV-i-------Hsf~vP~lg-----------------~k~dai---PG~~n~~~~~~~~~G 190 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSADV-L-------HSWTLPSLG-----------------LKMDAV---PGRLNQLAFLSSRPG 190 (225)
T ss_pred cceEEEecCCEEEEEEEeCCh-h-------hcccccccc-----------------ccccCC---CCeEEEEEEEcCCCE
Confidence 355789999999999988764 3 355554433 123332 445557788999999
Q ss_pred eeEEEeeehhhh-ccCceEEEEEEcC
Q 020366 278 MWNMRSAIWERQ-YLGQQFYLKVWNA 302 (327)
Q Consensus 278 ~W~~HCHi~~h~-~~Gm~~~~~v~~~ 302 (327)
.+-.-|.-.-.. |.-|-..++|..+
T Consensus 191 ~~~g~CsE~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 191 SFYGQCSEICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCH
Confidence 999999875433 5557777766543
No 85
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=47.29 E-value=50 Score=24.86 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=16.2
Q ss_pred EEEEcCCceEEEEEEeCCCCCceEEEEE
Q 020366 39 SLDVHVGQSVSVLVTLNQPPKDYYIVAS 66 (327)
Q Consensus 39 ~l~l~~GqRydvlv~~~~~~~~y~ir~~ 66 (327)
...|.+||...+-+...+ +|.|.+...
T Consensus 67 ~~~l~~g~~~~~~f~~~~-~G~y~~~C~ 93 (104)
T PF13473_consen 67 SKVLPPGETATVTFTPLK-PGEYEFYCT 93 (104)
T ss_dssp EEEE-TT-EEEEEEEE-S--EEEEEB-S
T ss_pred EEEECCCCEEEEEEcCCC-CEEEEEEcC
Confidence 467889998888886554 677866554
No 86
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=43.92 E-value=18 Score=24.51 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=22.7
Q ss_pred EEecCCCcEEEEEEeCCe-EEEEEecCccceeeEeeEEEEcCCceEEEEEEeC
Q 020366 4 ISNVGLSTSFNFRIQGHT-MKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLN 55 (327)
Q Consensus 4 liNa~~~~~~~~sidgh~-l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~ 55 (327)
+.+.+....+.+.++++. ++.. +.+-....+-|.+|++.-+.++..
T Consensus 14 ie~~g~~~~v~~~~~~~~~l~a~------it~~~~~~L~L~~G~~V~~~ik~~ 60 (64)
T PF03459_consen 14 IENLGSEVEVTLDLGGGETLTAR------ITPESAEELGLKPGDEVYASIKAS 60 (64)
T ss_dssp EEESSSEEEEEEEETTSEEEEEE------EEHHHHHHCT-STT-EEEEEE-GG
T ss_pred EEECCCeEEEEEEECCCCEEEEE------EcHHHHHHcCCCCCCEEEEEEehh
Confidence 334444444455555444 2221 223345667778888888887754
No 87
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=40.73 E-value=1.4e+02 Score=21.64 Aligned_cols=79 Identities=15% Similarity=0.080 Sum_probs=50.4
Q ss_pred EecCCcEEEEEEEeCCCCcCceeecC--CCeEEEEeccCCCCccccccCCCCCCCceeeEEeCCCCEEEEEEEecCCeee
Q 020366 202 QVNLHEYIEVVFQNNEKTMQSWHLDG--YDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 279 (327)
Q Consensus 202 ~~~~g~~v~ivi~N~~~~~HP~HLHG--~~F~Vl~~g~G~~~~~~~~~~n~~~p~~rDTv~vp~~g~~virf~adnpG~W 279 (327)
.++.|+.+.|.|..+...---|++.. ....+++...- + .+..+. .+..+|..++.|+|..||.+
T Consensus 2 ~v~~g~~~~I~L~~npstGY~W~~~~~~~~l~l~~~~~~---~-----~~~~~~------~vG~~g~~~f~f~a~~~G~~ 67 (92)
T PF09394_consen 2 TVKVGDTFEIELPENPSTGYSWSLSSDSDGLQLVSEEYI---P-----DNSPSG------LVGAPGTRTFTFKALKPGTT 67 (92)
T ss_dssp EEETTSEEEEEEEEBCCGTBEEEECTSTTTEEEEEEEEE---E-----SSTSST------SSTSSEEEEEEEEESSSEEE
T ss_pred eecCCCEEEEEECCCCCCCeEEEEecCCCeEEEcCCcEE---e-----CCCCcC------CCCCCcEEEEEEEEecCeeE
Confidence 57889999999987655444566665 33344333211 0 000001 45567888999999999999
Q ss_pred EEEeeehhhhccCce
Q 020366 280 NMRSAIWERQYLGQQ 294 (327)
Q Consensus 280 ~~HCHi~~h~~~Gm~ 294 (327)
-++.--...|..+-.
T Consensus 68 ~i~~~y~r~we~~~~ 82 (92)
T PF09394_consen 68 TIKFEYRRPWEKGSP 82 (92)
T ss_dssp EEEEEEEBTTTBSTT
T ss_pred EEEEEEECcCCCCCc
Confidence 888877666665543
No 88
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=35.93 E-value=2.1e+02 Score=22.30 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=11.4
Q ss_pred eEEEEcCCceEEEEEEeCC
Q 020366 38 DSLDVHVGQSVSVLVTLNQ 56 (327)
Q Consensus 38 ~~l~l~~GqRydvlv~~~~ 56 (327)
..+.|..|++|.|-|...+
T Consensus 94 ~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 94 STLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred eeEEEeCCcEEEEEEEEEe
Confidence 3466666666666666543
No 89
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=35.87 E-value=32 Score=33.48 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=21.0
Q ss_pred EEeCCCCEEEEEEEecCCeeeEEEee
Q 020366 259 AQVYPQSWTVILVSLDNQGMWNMRSA 284 (327)
Q Consensus 259 v~vp~~g~~virf~adnpG~W~~HCH 284 (327)
+.+.|....++-|.+|-||+|++-|-
T Consensus 594 ~~v~pq~tasvtf~a~kpgv~w~ycs 619 (637)
T COG4263 594 MEVKPQRTASVTFYADKPGVAWYYCS 619 (637)
T ss_pred EEEccCCceEEEEEccCCeeeehhhh
Confidence 34557788899999999999988753
No 90
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=34.99 E-value=1.6e+02 Score=22.60 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=28.0
Q ss_pred CcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeC
Q 020366 10 STSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLN 55 (327)
Q Consensus 10 ~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~ 55 (327)
.....|.+++..+.++|+||.-+--.+...-.-.. +-.+++|..+
T Consensus 27 L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~-~~~~~iIp~k 71 (116)
T PF02767_consen 27 LNGVLFEIENNKLRLVATDGHRLAVREIELDEENE-DEFSFIIPAK 71 (116)
T ss_dssp GGEEEEEEETTEEEEEEEESSEEEEEEEEEEEECE-SEEEEEEEHH
T ss_pred eeeEEEEEECCEEEEEEeCCceEEEEEEecCcccc-cceEEEEech
Confidence 35678889999999999999875433222111111 1466776653
No 91
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.38 E-value=55 Score=26.63 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.1
Q ss_pred eCCCCEEEEEEEe-cCC---eeeEEEeee
Q 020366 261 VYPQSWTVILVSL-DNQ---GMWNMRSAI 285 (327)
Q Consensus 261 vp~~g~~virf~a-dnp---G~W~~HCHi 285 (327)
|+||..+.|.+.. .|| |.|+|+|-.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5688999998854 466 899999987
No 92
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=33.30 E-value=1.6e+02 Score=23.08 Aligned_cols=23 Identities=4% Similarity=0.159 Sum_probs=14.5
Q ss_pred eeEeeEEEEcCCceEEEEEEeCC
Q 020366 34 QNIYDSLDVHVGQSVSVLVTLNQ 56 (327)
Q Consensus 34 P~~v~~l~l~~GqRydvlv~~~~ 56 (327)
+.....+.|..|++|+|-|...+
T Consensus 98 ~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 98 SSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp CCEEEEEEE-TT-EEEEEEEEEE
T ss_pred ceEEEEEEeeCCeeEEEEEEEEE
Confidence 34456777888888888877654
No 93
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=31.06 E-value=65 Score=21.90 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=13.0
Q ss_pred eeEEEEcCCceEEEEEEeC
Q 020366 37 YDSLDVHVGQSVSVLVTLN 55 (327)
Q Consensus 37 v~~l~l~~GqRydvlv~~~ 55 (327)
+..+.|.+|+++-+.++..
T Consensus 44 ~~~l~l~~G~~v~~~ik~~ 62 (69)
T TIGR00638 44 VAELGLKPGKEVYAVIKAP 62 (69)
T ss_pred HhhCCCCCCCEEEEEEECc
Confidence 4566677777777777654
No 94
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=30.57 E-value=1.2e+02 Score=29.53 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=28.6
Q ss_pred CeeEEecCC-CcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeC
Q 020366 1 MFRISNVGL-STSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLN 55 (327)
Q Consensus 1 RlRliNa~~-~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~ 55 (327)
++||+|.+. ...|+++++|. +|..++- .-+.+.|.+||+.++-|...
T Consensus 351 ~~~i~Nk~~~~~~~~l~v~g~-------~~~~~~~-~~~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 351 TLKILNKTEQPHEYYLSVLGL-------PGIKIEG-PGAPIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEECCCCCEEEEEEEecC-------CCcEEEc-CCceEEECCCCEEEEEEEEE
Confidence 367777765 56677777664 2222210 01278999999987766654
No 95
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=29.73 E-value=2.3e+02 Score=20.85 Aligned_cols=56 Identities=21% Similarity=0.141 Sum_probs=31.8
Q ss_pred eeEEecCC-CcEEEEEEeCCeEEEEEecCccceeeEeeEEEEcCCceEEEEEEeC-C-CCCceEEEE
Q 020366 2 FRISNVGL-STSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLN-Q-PPKDYYIVA 65 (327)
Q Consensus 2 lRliNa~~-~~~~~~sidgh~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv~~~-~-~~~~y~ir~ 65 (327)
++|.|.|. .+.|++......= +...++|. .-.|+||+..++-|++. . +.|.|.-..
T Consensus 26 v~l~N~s~~p~~f~v~~~~~~~-----~~~~v~~~---~g~l~PG~~~~~~V~~~~~~~~g~~~~~l 84 (102)
T PF14874_consen 26 VTLTNTSSIPARFRVRQPESLS-----SFFSVEPP---SGFLAPGESVELEVTFSPTKPLGDYEGSL 84 (102)
T ss_pred EEEEECCCCCEEEEEEeCCcCC-----CCEEEECC---CCEECCCCEEEEEEEEEeCCCCceEEEEE
Confidence 67889987 4455555543100 01112222 23499999999999887 3 346554433
No 96
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=28.51 E-value=1.6e+02 Score=22.38 Aligned_cols=39 Identities=13% Similarity=-0.031 Sum_probs=30.1
Q ss_pred eEEeCCCCEEEEEEEecCCeeeEEEeeehhhhccCc--eEEEEE
Q 020366 258 TAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQ--QFYLKV 299 (327)
Q Consensus 258 Tv~vp~~g~~virf~adnpG~W~~HCHi~~h~~~Gm--~~~~~v 299 (327)
...|.+|+...+.|..+-.|.-+|.|++ .+ .|+ ...|.+
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~--~~-~~~~~~~~f~v 68 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHF--RW-PGGKYHHSFDV 68 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEE--EE-CCccEEEEEEE
Confidence 4468889999999988877899999999 55 555 455544
No 97
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=26.75 E-value=1.3e+02 Score=25.81 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=21.4
Q ss_pred EEEEcCCceEEEEEEeCC-------CCCceEEEEEec
Q 020366 39 SLDVHVGQSVSVLVTLNQ-------PPKDYYIVASTR 68 (327)
Q Consensus 39 ~l~l~~GqRydvlv~~~~-------~~~~y~ir~~~~ 68 (327)
.-.+.+||.|||.|++.= +-|.|-+.++..
T Consensus 50 ~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~ 86 (199)
T PF06775_consen 50 ARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLELL 86 (199)
T ss_pred ccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEE
Confidence 446889999999999842 236677766654
No 98
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=26.56 E-value=51 Score=22.40 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=19.7
Q ss_pred EEEEecCccceeeEeeEEEEcCCceEEEE
Q 020366 23 KLVEVEGSHTIQNIYDSLDVHVGQSVSVL 51 (327)
Q Consensus 23 ~VIa~DG~~v~P~~v~~l~l~~GqRydvl 51 (327)
.+++.+|..+..-.-+...|..|.|++|+
T Consensus 31 ~~v~vN~~~v~~~~~~~~~L~~gD~vei~ 59 (65)
T PRK06944 31 FAVAVNGDFVARTQHAARALAAGDRLDLV 59 (65)
T ss_pred eEEEECCEEcCchhcccccCCCCCEEEEE
Confidence 46778887765544445557788888775
No 99
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=26.39 E-value=93 Score=25.19 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=20.2
Q ss_pred CCcEEEEEEEeCCCCcCceeecCC
Q 020366 205 LHEYIEVVFQNNEKTMQSWHLDGY 228 (327)
Q Consensus 205 ~g~~v~ivi~N~~~~~HP~HLHG~ 228 (327)
.+..|++.+.+.....|.||+|-.
T Consensus 25 ~~v~v~~~l~GL~pG~hg~HIHe~ 48 (144)
T cd00305 25 GGVTITGELSGLTPGLHGFHIHEF 48 (144)
T ss_pred CCEEEEEEEECCCCCceeEEEEec
Confidence 367788889998888999999975
No 100
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=24.52 E-value=69 Score=21.83 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=25.0
Q ss_pred eEEEEEecCccceeeEeeEEEEcCCceEEEEE
Q 020366 21 TMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLV 52 (327)
Q Consensus 21 ~l~VIa~DG~~v~P~~v~~l~l~~GqRydvlv 52 (327)
+..+||.+|..+.+-.-+...|..|.|++++=
T Consensus 28 ~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 28 RRVAVAVNGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CeEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 45678999998876666667899999998864
No 101
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=24.37 E-value=68 Score=21.85 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=22.2
Q ss_pred eEEEEEecCccceeeEeeEEEEcCCceEEEE
Q 020366 21 TMKLVEVEGSHTIQNIYDSLDVHVGQSVSVL 51 (327)
Q Consensus 21 ~l~VIa~DG~~v~P~~v~~l~l~~GqRydvl 51 (327)
+..+++.+|..+....-....|..|.|++++
T Consensus 30 ~~vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 30 RRVAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred CeEEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 4456778877776666667778888888875
No 102
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=23.82 E-value=1.2e+02 Score=19.59 Aligned_cols=41 Identities=7% Similarity=-0.016 Sum_probs=30.2
Q ss_pred CCCCCceeeEE-eCCCCEEEEEEEecCCeeeEEEeeehhhhc
Q 020366 250 LADTLTRHTAQ-VYPQSWTVILVSLDNQGMWNMRSAIWERQY 290 (327)
Q Consensus 250 ~~~p~~rDTv~-vp~~g~~virf~adnpG~W~~HCHi~~h~~ 290 (327)
+..|+.+-+.. .+.|+...+++.-..-..+=+||....|..
T Consensus 3 ~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~ 44 (49)
T PF14392_consen 3 VSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSD 44 (49)
T ss_pred CCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCH
Confidence 34465555433 456777888888888889999999988865
No 103
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=22.79 E-value=62 Score=23.76 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=20.9
Q ss_pred EEEEEecCccceeeEeeEEEEcCCceEEEE
Q 020366 22 MKLVEVEGSHTIQNIYDSLDVHVGQSVSVL 51 (327)
Q Consensus 22 l~VIa~DG~~v~P~~v~~l~l~~GqRydvl 51 (327)
..+||.+|..|.+-.-+...|..|.|++|+
T Consensus 49 ~vAVevNg~iVpr~~w~~t~L~egD~IEIv 78 (84)
T PRK06083 49 GCVFAINNQVVPRSEWQSTVLSSGDAISLF 78 (84)
T ss_pred eEEEEECCEEeCHHHcCcccCCCCCEEEEE
Confidence 345677777776666667777888887775
No 104
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=22.71 E-value=1.4e+02 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=11.2
Q ss_pred eeEEecCCCcEEEEEEeCCeEEEEEecCc
Q 020366 2 FRISNVGLSTSFNFRIQGHTMKLVEVEGS 30 (327)
Q Consensus 2 lRliNa~~~~~~~~sidgh~l~VIa~DG~ 30 (327)
|+++|+|....+.+.=++.....+...|.
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~~~~~ 104 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLESEGP 104 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEETCSSB
T ss_pred EEEeCCCCCCEEEEeccccceeecccCcc
Confidence 34444444433333333333333333333
No 105
>PRK10290 superoxide dismutase; Provisional
Probab=20.59 E-value=1.3e+02 Score=25.39 Aligned_cols=90 Identities=8% Similarity=-0.083 Sum_probs=48.2
Q ss_pred cCCcEEEEEEEeCCCCcCceeecCCCeE-----------EEEeccCCCCcccc-c-cCCCCCCCcee--eEEeCCCCEEE
Q 020366 204 NLHEYIEVVFQNNEKTMQSWHLDGYDFW-----------VVGYGSGQWAAEKR-R-TYNLADTLTRH--TAQVYPQSWTV 268 (327)
Q Consensus 204 ~~g~~v~ivi~N~~~~~HP~HLHG~~F~-----------Vl~~g~G~~~~~~~-~-~~n~~~p~~rD--Tv~vp~~g~~v 268 (327)
+.|-.|+..+.+..+..|=||+|-.-=- -.+.| |.|++... . ..+...+-.=| -+.+...|.+.
T Consensus 47 ~~gv~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAG-gHfNP~~~~~hg~p~~~~H~GDL~ni~a~~dG~a~ 125 (173)
T PRK10290 47 DKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAG-GHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGKAT 125 (173)
T ss_pred CCcEEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccC-CccCCCCCcCCCCCCCCCCcCcccCEEECCCeeEE
Confidence 4566678888888888999999965421 01222 55665421 0 00000001111 34455788888
Q ss_pred EEEEecCCeeeEEEeeehhhhccCceEEEEEEcCcc
Q 020366 269 ILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVH 304 (327)
Q Consensus 269 irf~adnpG~W~~HCHi~~h~~~Gm~~~~~v~~~~~ 304 (327)
++|.++.- . -+..-.+..+.|-+..+
T Consensus 126 ~~~~~~~~-----~-----~~~~i~GralVIH~~~D 151 (173)
T PRK10290 126 DPVIAPRL-----K-----SLDEVKDKALMVHVGGD 151 (173)
T ss_pred EEEEeCCc-----c-----CccccCCcEEEEECCCC
Confidence 88876621 1 12233466777765444
Done!