Query 020367
Match_columns 327
No_of_seqs 307 out of 1455
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 3.1E-40 6.7E-45 306.5 16.6 199 127-326 6-204 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.2E-37 2.6E-42 296.7 22.2 228 94-326 2-230 (308)
3 TIGR01476 chlor_syn_BchG bacte 100.0 4E-33 8.7E-38 262.8 18.3 208 106-326 1-209 (283)
4 PLN00012 chlorophyll synthetas 100.0 4.1E-32 8.8E-37 264.2 24.2 214 100-326 80-300 (375)
5 PRK07566 bacteriochlorophyll/c 100.0 1.3E-31 2.8E-36 256.1 22.3 212 102-326 24-237 (314)
6 TIGR02056 ChlG chlorophyll syn 100.0 1.7E-31 3.6E-36 254.5 21.9 214 100-326 11-231 (306)
7 PRK12884 ubiA prenyltransferas 100.0 9.4E-32 2E-36 252.7 19.4 202 103-326 2-203 (279)
8 PRK09573 (S)-2,3-di-O-geranylg 100.0 9E-32 2E-36 253.1 18.6 201 104-326 2-202 (279)
9 PRK12392 bacteriochlorophyll c 100.0 4.3E-31 9.3E-36 253.6 23.0 213 101-326 8-228 (331)
10 PRK12882 ubiA prenyltransferas 100.0 1.2E-31 2.6E-36 251.9 18.2 203 104-326 3-205 (276)
11 PRK12883 ubiA prenyltransferas 100.0 3.7E-31 8.1E-36 248.7 19.5 201 104-326 2-202 (277)
12 COG0382 UbiA 4-hydroxybenzoate 100.0 3.4E-30 7.3E-35 243.6 19.5 205 101-326 6-215 (289)
13 TIGR01475 ubiA_other putative 100.0 3.3E-30 7.2E-35 242.9 18.9 204 104-326 1-206 (282)
14 PRK12874 ubiA prenyltransferas 100.0 8.3E-30 1.8E-34 241.1 21.2 207 101-326 4-215 (291)
15 PRK13595 ubiA prenyltransferas 100.0 1.5E-29 3.3E-34 237.6 20.4 205 102-326 9-217 (292)
16 PRK13106 ubiA prenyltransferas 100.0 1.3E-29 2.9E-34 240.4 19.5 209 99-325 9-223 (300)
17 PRK12847 ubiA 4-hydroxybenzoat 100.0 2.4E-29 5.2E-34 237.4 20.1 206 101-326 3-213 (285)
18 PRK06080 1,4-dihydroxy-2-napht 100.0 4.2E-29 9.2E-34 236.4 21.7 207 104-326 2-216 (293)
19 PRK12869 ubiA protoheme IX far 100.0 4.4E-29 9.4E-34 235.0 21.2 204 104-326 1-207 (279)
20 PRK12886 ubiA prenyltransferas 100.0 4.3E-29 9.3E-34 236.3 21.2 204 102-326 5-210 (291)
21 PRK12895 ubiA prenyltransferas 100.0 3.9E-29 8.5E-34 235.6 19.6 203 104-325 2-206 (286)
22 PRK04375 protoheme IX farnesyl 100.0 8E-29 1.7E-33 235.1 21.1 205 102-326 7-215 (296)
23 PRK12870 ubiA 4-hydroxybenzoat 100.0 4.2E-29 9E-34 236.4 18.5 204 101-325 5-213 (290)
24 PRK05951 ubiA prenyltransferas 100.0 1.1E-28 2.3E-33 234.3 21.2 206 103-323 2-216 (296)
25 PRK13387 1,4-dihydroxy-2-napht 100.0 1.5E-28 3.2E-33 235.1 20.8 207 105-326 3-237 (317)
26 PRK12848 ubiA 4-hydroxybenzoat 100.0 1.5E-28 3.2E-33 231.8 19.7 204 102-326 2-210 (282)
27 PRK12888 ubiA prenyltransferas 100.0 2.1E-28 4.5E-33 230.9 20.3 202 105-325 2-206 (284)
28 PRK13362 protoheme IX farnesyl 100.0 4.3E-28 9.3E-33 230.9 21.3 207 101-326 9-218 (306)
29 PRK12878 ubiA 4-hydroxybenzoat 100.0 5.7E-28 1.2E-32 230.8 20.6 210 98-326 23-240 (314)
30 TIGR01473 cyoE_ctaB protoheme 100.0 8.1E-28 1.8E-32 226.4 19.6 202 106-326 1-206 (280)
31 TIGR01474 ubiA_proteo 4-hydrox 100.0 8.9E-28 1.9E-32 226.4 19.7 201 106-325 2-207 (281)
32 PRK12873 ubiA prenyltransferas 100.0 1.7E-27 3.8E-32 224.8 18.4 205 101-324 3-216 (294)
33 PLN02809 4-hydroxybenzoate non 100.0 4.7E-27 1E-31 222.1 20.5 203 102-325 3-213 (289)
34 PRK07419 1,4-dihydroxy-2-napht 100.0 6.7E-27 1.4E-31 222.3 20.8 208 102-326 9-222 (304)
35 PRK08238 hypothetical protein; 100.0 3.2E-27 7E-32 236.9 19.0 225 60-311 150-377 (479)
36 PRK12876 ubiA prenyltransferas 100.0 7.3E-27 1.6E-31 220.7 19.9 206 103-325 2-219 (300)
37 PLN02922 prenyltransferase 99.9 1E-26 2.3E-31 222.0 20.7 216 102-326 12-236 (315)
38 PRK13105 ubiA prenyltransferas 99.9 1.3E-26 2.8E-31 218.0 19.0 203 105-326 1-208 (282)
39 TIGR00751 menA 1,4-dihydroxy-2 99.9 1.8E-26 3.8E-31 217.7 19.3 199 113-326 1-212 (284)
40 PRK12871 ubiA prenyltransferas 99.9 1.5E-25 3.3E-30 212.6 20.2 203 103-326 3-223 (297)
41 TIGR02235 menA_cyano-plnt 1,4- 99.9 2.1E-25 4.5E-30 210.5 20.7 202 108-326 2-209 (285)
42 PRK12875 ubiA prenyltransferas 99.9 2.3E-25 5E-30 209.8 20.0 203 101-326 4-213 (282)
43 PRK12872 ubiA prenyltransferas 99.9 1.3E-25 2.8E-30 211.6 15.0 205 103-326 2-209 (285)
44 COG1575 MenA 1,4-dihydroxy-2-n 99.9 9.1E-25 2E-29 204.6 20.0 208 103-325 6-223 (303)
45 PF01040 UbiA: UbiA prenyltran 99.9 1.6E-25 3.4E-30 206.0 13.8 167 146-325 25-193 (257)
46 PRK12324 phosphoribose diphosp 99.9 7.1E-24 1.5E-28 200.6 18.8 151 101-261 7-159 (295)
47 PRK13592 ubiA prenyltransferas 99.9 1.9E-23 4E-28 195.9 16.2 209 103-326 3-221 (299)
48 PRK13591 ubiA prenyltransferas 99.9 1.1E-22 2.3E-27 192.2 19.4 159 151-326 65-227 (307)
49 COG0109 CyoE Polyprenyltransfe 99.9 1.8E-22 3.8E-27 188.9 12.3 207 101-326 14-223 (304)
50 PLN02776 prenyltransferase 99.9 2.8E-21 6.1E-26 185.5 19.1 188 111-319 1-192 (341)
51 KOG1381 Para-hydroxybenzoate-p 99.8 3.3E-19 7.1E-24 163.0 5.9 214 95-326 54-272 (353)
52 KOG1380 Heme A farnesyltransfe 99.3 3.3E-12 7.2E-17 119.8 4.2 198 97-317 86-288 (409)
53 KOG4581 Predicted membrane pro 99.0 2.3E-11 5E-16 109.5 -0.6 206 102-323 58-274 (359)
54 PRK13591 ubiA prenyltransferas 93.7 0.25 5.4E-06 47.5 7.7 66 162-230 197-271 (307)
55 COG1575 MenA 1,4-dihydroxy-2-n 91.7 0.62 1.3E-05 44.6 7.2 45 148-194 180-224 (303)
56 PRK13387 1,4-dihydroxy-2-napht 91.1 1.2 2.6E-05 43.0 8.8 49 149-200 194-243 (317)
57 PLN00012 chlorophyll synthetas 90.9 1.4 3.1E-05 43.5 9.3 34 152-185 260-294 (375)
58 PRK12872 ubiA prenyltransferas 90.3 1.7 3.8E-05 40.7 9.0 34 152-185 169-203 (285)
59 PRK07419 1,4-dihydroxy-2-napht 89.5 1.9 4.1E-05 41.4 8.7 43 152-197 182-225 (304)
60 PLN02922 prenyltransferase 89.3 2 4.3E-05 41.4 8.6 47 149-198 193-240 (315)
61 PRK07566 bacteriochlorophyll/c 89.1 1.9 4.2E-05 41.4 8.4 32 154-185 199-231 (314)
62 TIGR01474 ubiA_proteo 4-hydrox 88.9 4.6 9.9E-05 38.1 10.6 36 150-185 166-202 (281)
63 TIGR02056 ChlG chlorophyll syn 88.1 2.7 6E-05 40.2 8.7 32 153-184 192-224 (306)
64 PRK12392 bacteriochlorophyll c 87.8 2.1 4.6E-05 41.6 7.7 34 152-185 188-222 (331)
65 PRK12886 ubiA prenyltransferas 86.0 3.1 6.7E-05 39.6 7.7 36 150-185 168-204 (291)
66 PRK12875 ubiA prenyltransferas 86.0 10 0.00022 36.0 11.1 57 151-210 172-229 (282)
67 PRK13105 ubiA prenyltransferas 85.7 5.5 0.00012 37.8 9.2 57 151-210 167-224 (282)
68 TIGR01476 chlor_syn_BchG bacte 85.7 4.1 9E-05 38.3 8.4 32 154-185 171-203 (283)
69 TIGR01475 ubiA_other putative 85.6 5.9 0.00013 37.3 9.4 35 150-184 164-199 (282)
70 PRK12884 ubiA prenyltransferas 85.6 4.4 9.5E-05 37.9 8.5 34 152-185 163-197 (279)
71 TIGR02235 menA_cyano-plnt 1,4- 85.6 4.6 0.0001 38.3 8.7 47 151-200 168-215 (285)
72 PRK06080 1,4-dihydroxy-2-napht 85.1 5 0.00011 37.9 8.7 47 151-200 175-222 (293)
73 PRK04214 rbn ribonuclease BN/u 85.1 11 0.00023 37.7 11.3 21 151-171 112-132 (412)
74 PRK12887 ubiA tocopherol phyty 85.0 5.9 0.00013 38.0 9.2 30 152-181 190-220 (308)
75 PRK12847 ubiA 4-hydroxybenzoat 84.8 4.7 0.0001 38.1 8.3 36 150-185 171-207 (285)
76 PRK12882 ubiA prenyltransferas 83.8 7.8 0.00017 36.3 9.3 35 151-185 164-199 (276)
77 PRK12848 ubiA 4-hydroxybenzoat 83.2 5.8 0.00012 37.4 8.2 39 148-186 166-205 (282)
78 PRK12871 ubiA prenyltransferas 83.1 13 0.00028 35.5 10.6 36 151-186 182-218 (297)
79 PRK12888 ubiA prenyltransferas 82.2 7.1 0.00015 37.0 8.3 36 150-185 165-201 (284)
80 TIGR00751 menA 1,4-dihydroxy-2 81.6 7.4 0.00016 36.9 8.2 44 153-199 173-217 (284)
81 PRK12883 ubiA prenyltransferas 81.0 6.5 0.00014 36.8 7.6 31 155-185 165-196 (277)
82 PRK09573 (S)-2,3-di-O-geranylg 80.2 7.7 0.00017 36.4 7.8 34 152-185 162-196 (279)
83 PRK12874 ubiA prenyltransferas 79.1 7.1 0.00015 37.1 7.3 35 151-185 174-209 (291)
84 COG0382 UbiA 4-hydroxybenzoate 77.8 56 0.0012 30.7 12.9 75 98-177 6-85 (289)
85 PRK13106 ubiA prenyltransferas 77.8 8.5 0.00018 36.9 7.3 34 151-184 184-218 (300)
86 PRK12878 ubiA 4-hydroxybenzoat 74.8 36 0.00079 32.7 10.9 35 151-185 199-234 (314)
87 PRK05951 ubiA prenyltransferas 73.6 18 0.00039 34.4 8.3 35 154-191 181-216 (296)
88 PRK12870 ubiA 4-hydroxybenzoat 71.3 21 0.00045 33.9 8.2 37 150-186 172-209 (290)
89 COG1295 Rbn Ribonuclease BN fa 70.5 73 0.0016 30.4 11.8 41 221-262 201-244 (303)
90 PRK13592 ubiA prenyltransferas 70.2 13 0.00028 35.7 6.4 23 287-309 55-77 (299)
91 PRK01637 hypothetical protein; 68.0 95 0.0021 29.2 11.9 23 151-173 104-126 (286)
92 PF01040 UbiA: UbiA prenyltran 66.7 19 0.00042 32.4 6.8 23 154-176 156-178 (257)
93 PRK12876 ubiA prenyltransferas 63.2 1.2E+02 0.0026 29.1 11.6 27 159-185 187-214 (300)
94 PLN02878 homogentisate phytylt 61.9 51 0.0011 31.3 8.7 44 154-200 166-210 (280)
95 PRK12869 ubiA protoheme IX far 58.8 33 0.00072 32.2 6.9 30 156-185 171-201 (279)
96 PF04341 DUF485: Protein of un 58.0 87 0.0019 24.3 8.1 38 138-175 52-89 (91)
97 PRK12324 phosphoribose diphosp 48.0 18 0.0004 34.5 3.3 21 289-309 57-77 (295)
98 PRK12895 ubiA prenyltransferas 46.4 1.2E+02 0.0027 28.7 8.6 35 150-184 165-200 (286)
99 PF00348 polyprenyl_synt: Poly 46.0 1.2E+02 0.0027 27.9 8.5 57 148-207 37-93 (260)
100 PRK12873 ubiA prenyltransferas 45.1 2.7E+02 0.0058 26.6 10.7 33 153-185 179-212 (294)
101 TIGR01473 cyoE_ctaB protoheme 43.0 1.1E+02 0.0024 28.6 7.7 21 165-185 179-200 (280)
102 PF11990 DUF3487: Protein of u 42.6 1.1E+02 0.0024 25.3 6.7 40 171-212 8-51 (121)
103 PRK04375 protoheme IX farnesyl 42.0 2.6E+02 0.0056 26.4 10.2 33 153-185 176-209 (296)
104 PRK11383 hypothetical protein; 41.7 2.3E+02 0.0049 24.3 11.5 81 218-306 48-131 (145)
105 KOG4016 Synaptic vesicle prote 41.3 2E+02 0.0044 26.3 8.6 29 235-263 98-126 (233)
106 COG4147 DhlC Predicted symport 40.8 1.2E+02 0.0027 31.2 7.9 55 146-208 355-410 (529)
107 PRK13595 ubiA prenyltransferas 40.3 1.4E+02 0.003 28.6 7.9 54 155-211 180-234 (292)
108 TIGR02748 GerC3_HepT heptapren 38.7 3.1E+02 0.0068 26.2 10.3 51 151-204 70-120 (319)
109 PLN02809 4-hydroxybenzoate non 38.1 3.5E+02 0.0077 25.6 10.9 25 162-186 184-209 (289)
110 COG3476 Tryptophan-rich sensor 36.0 3E+02 0.0065 24.1 14.6 86 156-252 19-115 (161)
111 TIGR03750 conj_TIGR03750 conju 32.9 2.1E+02 0.0045 23.4 6.7 34 171-206 5-38 (111)
112 PF14256 YwiC: YwiC-like prote 29.1 3.4E+02 0.0073 22.6 12.3 12 117-128 8-19 (129)
113 PF03208 PRA1: PRA1 family pro 26.7 3.8E+02 0.0082 22.4 10.1 7 205-211 54-60 (153)
114 PF10777 YlaC: Inner membrane 26.1 84 0.0018 27.1 3.4 25 295-319 116-140 (155)
115 PRK08238 hypothetical protein; 26.0 61 0.0013 33.2 3.1 23 288-310 236-258 (479)
116 PF12270 Cyt_c_ox_IV: Cytochro 25.4 4.2E+02 0.0091 22.5 10.9 47 184-230 82-130 (137)
117 PF04971 Lysis_S: Lysis protei 24.6 71 0.0015 23.8 2.4 29 147-175 35-63 (68)
118 PLN02776 prenyltransferase 23.9 4.1E+02 0.0089 26.0 8.3 39 167-205 174-215 (341)
119 PF04284 DUF441: Protein of un 23.9 2.4E+02 0.0053 24.0 5.8 14 179-192 59-72 (140)
120 PF06645 SPC12: Microsomal sig 22.9 3E+02 0.0065 20.7 5.7 19 193-211 15-33 (76)
121 TIGR00267 conserved hypothetic 22.0 5.2E+02 0.011 22.3 8.6 21 147-167 31-51 (169)
122 TIGR00766 ribonuclease, putati 21.8 6.2E+02 0.013 23.1 9.2 20 152-171 96-115 (263)
123 TIGR02762 TraL_TIGR type IV co 21.4 3.5E+02 0.0076 21.2 6.0 31 172-206 7-37 (95)
124 COG4125 Predicted membrane pro 20.4 5.5E+02 0.012 22.0 7.7 26 149-174 46-71 (149)
125 PF04547 Anoctamin: Calcium-ac 20.1 2.5E+02 0.0054 28.1 6.2 42 146-187 327-371 (452)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=3.1e-40 Score=306.54 Aligned_cols=199 Identities=54% Similarity=0.946 Sum_probs=182.0
Q ss_pred HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHHHH
Q 020367 127 NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206 (327)
Q Consensus 127 g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la 206 (327)
.+++|.+..+|+++..+.+++.+++++++++.++..+|||+|+|+||+|||+||+|||++|+++++.++..+.++|++++
T Consensus 6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la 85 (280)
T PLN02878 6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG 85 (280)
T ss_pred HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35777777778777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHH
Q 020367 207 VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF 286 (327)
Q Consensus 207 ~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~ 286 (327)
+.+|+++++++++.+++++++||.++||+|+||+++++.+|.....++.+.+|+|.|++++++|++. .++++.++.+++
T Consensus 86 ~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~-~~~~~~~~~~~f 164 (280)
T PLN02878 86 WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPA-VFTRPLIFATAF 164 (280)
T ss_pred HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCcc-ccchhHHHHHHH
Confidence 9999878878777888999999988899999999999999998888888899999999999999765 566677777778
Q ss_pred HHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 287 ~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
++++..+++++||++|+|||++.|++|+|+++|+|+++++
T Consensus 165 ~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i 204 (280)
T PLN02878 165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWL 204 (280)
T ss_pred HHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHH
Confidence 8888999999999999999999999999999999999875
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=296.72 Aligned_cols=228 Identities=30% Similarity=0.538 Sum_probs=187.4
Q ss_pred chhhhHhhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Q 020367 94 SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172 (327)
Q Consensus 94 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~-~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~D 172 (327)
|++.+++..+.+++|+|++|||+.+.+.++++.+.+++.....+. ....+..++.++++...++.+++.+|||+|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455677888899999999999999999999988887764322221 1223445555666667777777779999999999
Q ss_pred ccCCCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367 173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (327)
Q Consensus 173 r~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~ 252 (327)
++|||+||+++|++|+++++.++.++.++|+++++..|++.+ +..+++.+++++||. ||+|+||+++.++++++..+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~-~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLL-ITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999996544 455678899999995 99999999999999999888
Q ss_pred HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
|.++.+|.+.+.+.. .+... .++...++.++++++++.+++++||++|+|||++.|+||+|+++|+|++.++
T Consensus 159 g~i~~~g~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l 230 (308)
T PRK12887 159 GVIVNLGLFLHFQWL-LGGSV-LIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKL 230 (308)
T ss_pred HHHHHHHHHHHHHHH-Hhccc-cCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHH
Confidence 988888887764322 22222 4566667777888899999999999999999999999999999999998864
No 3
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=4e-33 Score=262.78 Aligned_cols=208 Identities=21% Similarity=0.220 Sum_probs=166.1
Q ss_pred HHHHHHHchhhhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCcccc
Q 020367 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG 184 (327)
Q Consensus 106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG 184 (327)
|+|++++||++|..++++++.|.+++.....+ +++. ..++.++++..+.+.++|.+|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46889999999999999999999887432222 2222 12344667889999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHhh
Q 020367 185 EISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI 264 (327)
Q Consensus 185 ~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~ 264 (327)
++|++++..++.++.++++++++.++.+...+..+++++++++||. ||+++||+++++++.+++.++.....+.+.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-- 154 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-- 154 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999888866634444567778999996 899999999889998887655322222221
Q ss_pred HHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 265 ~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+.+ .++...++..+..+++..+++++||++|+|+|+++|+||+|+++|+|+++++
T Consensus 155 ---~~~----~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l 209 (283)
T TIGR01476 155 ---IFA----PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIV 209 (283)
T ss_pred ---HhC----CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHH
Confidence 222 2344455556667788889999999999999999999999999999999874
No 4
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=4.1e-32 Score=264.22 Aligned_cols=214 Identities=20% Similarity=0.306 Sum_probs=164.0
Q ss_pred hhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCC
Q 020367 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY 178 (327)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~ 178 (327)
...+++++|++++||++|..+++++++|.... +.+ ++.+. .....+.++++..++++++|++|||+|+|+|++|+|+
T Consensus 80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~ 157 (375)
T PLN00012 80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY 157 (375)
T ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence 44578899999999999999999999988743 322 21111 1112356677888999999999999999999999999
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (327)
Q Consensus 179 RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~------~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~ 252 (327)
||+++|++++++++.++.+++++++.+++.+.. +..++..+++++++++||. ||+++||+++++++.++...
T Consensus 158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~ 235 (375)
T PLN00012 158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASY 235 (375)
T ss_pred CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHH
Confidence 999999999999999877777777777665431 2232333457778999996 89999999999998877665
Q ss_pred HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+..+..+.+ .+.| .++...+++.++.+++..++++.||++|+|+|+++|++|+|+++|+|+++++
T Consensus 236 ~~lp~~~g~-----a~~g----~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l 300 (375)
T PLN00012 236 ISLPWWAGQ-----ALFG----TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWI 300 (375)
T ss_pred HHHHHHHHH-----HHcC----CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHH
Confidence 532211111 2344 3455556666777888999999999999999999999999999999999875
No 5
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=1.3e-31 Score=256.12 Aligned_cols=212 Identities=21% Similarity=0.292 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHH-HHHHHHHHHHHHHHHHHhhhccccchhccCCCCCC
Q 020367 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTG-LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 180 (327)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~-~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RP 180 (327)
.+++++|++++||++|.+++++++.|.+.+. .. ++....... .+.+++++.++++++|++|||+|+|+|++|+|+||
T Consensus 24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp 101 (314)
T PRK07566 24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSG-AF-GWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP 101 (314)
T ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHHHcC-CC-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence 4678999999999999999999888877543 21 222211111 24456777889999999999999999999999999
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHH-HHHhH
Q 020367 181 LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL-LTQFP 259 (327)
Q Consensus 181 lasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~-~~~lg 259 (327)
+++|++++++++.++.++.++++.+++.+|++.+. ..+++++++++||. ||+++||+++++++.+++.+|. ++..|
T Consensus 102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~-l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g 178 (314)
T PRK07566 102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFL-AALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAG 178 (314)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHH-HHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999989865553 34567778899996 8889999998899999887753 33343
Q ss_pred HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
++. +.+. .++...++..++.+++..+++..||++|+|+|+++|+||+|+++|+|+++++
T Consensus 179 ~~~-----~~~~---~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l 237 (314)
T PRK07566 179 AAA-----FGAG---LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARI 237 (314)
T ss_pred HHH-----hccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHH
Confidence 332 2221 2344555556666778888999999999999999999999999999988754
No 6
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=1.7e-31 Score=254.48 Aligned_cols=214 Identities=21% Similarity=0.308 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCC
Q 020367 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY 178 (327)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~ 178 (327)
...+++++|++++||++|..++++++.|...+ +++ ++... ....++.++++..++++++|.+|||+|+|.|+.|+|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~ 88 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY 88 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence 44567899999999999999999999988754 322 21111 1111344457779999999999999999999999999
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (327)
Q Consensus 179 RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~------~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~ 252 (327)
||+++|+++++++..++..+.++++++++.+.. +..++..+++++++++||. ||+++||+++++++.++...
T Consensus 89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~ 166 (306)
T TIGR02056 89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASY 166 (306)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHH
Confidence 999999999999999999999888888776531 2333444567788999996 89999999988998887666
Q ss_pred HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+..+..+.+. +.| .++...++..++.++|+.++++.||++|+|+|+++|+||+|+++|+|+++++
T Consensus 167 ~~~~~~~~~a-----~~g----~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~ 231 (306)
T TIGR02056 167 IALPWWAGHA-----LFG----ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWI 231 (306)
T ss_pred HHHHHHHHHH-----HhC----CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHH
Confidence 5433333221 234 3455556666777889999999999999999999999999999999998763
No 7
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=9.4e-32 Score=252.74 Aligned_cols=202 Identities=22% Similarity=0.357 Sum_probs=168.7
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCcc
Q 020367 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA 182 (327)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPla 182 (327)
+++++|++++||+++..+.++.+.|.++|.+..+ + ...++++++.+++++++|++||++|+|+|+.|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---L---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---h---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 5789999999999999999999999988865422 2 124667788999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHH
Q 020367 183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262 (327)
Q Consensus 183 sG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~ 262 (327)
+|++|+++++.++.++.++++.+++.+|+..+.. .+++.++++.||. ++||++++++++++..+|.++..|+..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLV-VILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888755544 4567778999996 689999889999998888766666542
Q ss_pred hhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 263 ~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+ +. .+...+++....++|+.+.++++|++|+|+|+++|+||+|+++|+|++.++
T Consensus 150 -----~-~~----~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~ 203 (279)
T PRK12884 150 -----V-GE----LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRI 203 (279)
T ss_pred -----h-CC----CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHH
Confidence 1 22 122445555666788889999999999999999999999999999998764
No 8
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.98 E-value=9e-32 Score=253.15 Aligned_cols=201 Identities=21% Similarity=0.314 Sum_probs=166.7
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCccc
Q 020367 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (327)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas 183 (327)
++++|++++||+++..++++.+.|.+++.+...+ +. ..++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKID--LK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcc--hH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 3689999999999999999999998888543222 22 256678899999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHh
Q 020367 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (327)
Q Consensus 184 G~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~ 263 (327)
|++|+++++.++.++.++++.+++.++++.+... +++.++.++||. ++||++.+++++++...|..+..|+...
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~ 150 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV 150 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887666444 456667899995 6899999999999998887666765532
Q ss_pred hHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 264 ~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.+ ....++++...++|+.++++.||++|+|+|+++|+||+|+++|+|++.++
T Consensus 151 -----~~------~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~ 202 (279)
T PRK09573 151 -----FN------VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYI 202 (279)
T ss_pred -----cc------chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHH
Confidence 22 11233344555678888999999999999999999999999999998764
No 9
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.98 E-value=4.3e-31 Score=253.61 Aligned_cols=213 Identities=21% Similarity=0.328 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCC
Q 020367 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL-ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~-~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~R 179 (327)
...++|+|++++||++|+ .+++++.|.++|.+.. ++.... ...+...++...+...++|++|||+|+|+|++|+|.|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 345789999999999998 6666777777876432 222111 1112222334455667889999999999999999999
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367 180 PLASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (327)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~la~~lg~-------~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~ 252 (327)
|+++|++|+++++.+..++.+++++++++++. +.+++..+++++++++||. ||+++||++++++..+++.+
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~ 163 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY 163 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence 99999999999999999999998888877652 2333334567788999996 89999999988888888777
Q ss_pred HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+.....+++ .+++ .++...++..++.++|+.+++++||++|+|+|++.|+||+|+++|++++.++
T Consensus 164 ~~~~~~~~~-----a~~g----~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i 228 (331)
T PRK12392 164 GFITFLSAN-----ALFS----DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLV 228 (331)
T ss_pred HHHHHHHHH-----HHhc----CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHH
Confidence 654333322 2334 2344555566677888999999999999999999999999999999998654
No 10
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=1.2e-31 Score=251.89 Aligned_cols=203 Identities=20% Similarity=0.244 Sum_probs=164.8
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCccc
Q 020367 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (327)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas 183 (327)
++|+|++++||+++..++++.+.|.+++.+...+ . ...++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~---~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--P---SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--H---HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 4789999999999999999999999988554221 1 1145678889999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHh
Q 020367 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (327)
Q Consensus 184 G~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~ 263 (327)
|++|+++++.++.++.++++.+++.+++..+.. .+++.++.++||. |+||++.+++++++...|.++.+|...
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~-~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~- 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAI-ALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA- 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999988655543 3456667889996 799999899999888777555555432
Q ss_pred hHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 264 ~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.+.. .....+.+.++.+++..+++++||++|+|+|+++|+||+|+++|+|++.++
T Consensus 151 -----~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~ 205 (276)
T PRK12882 151 -----VGTE---GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYV 205 (276)
T ss_pred -----hccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHH
Confidence 2211 122233444555677889999999999999999999999999999999875
No 11
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.97 E-value=3.7e-31 Score=248.66 Aligned_cols=201 Identities=24% Similarity=0.325 Sum_probs=161.9
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCccc
Q 020367 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (327)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas 183 (327)
.+|+|++++||+++..+.++.+.|.+++.+..++ +. ..++++++.++.++++|++|||+|+|+|+.|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3689999999999999999999999887554332 21 135566788888999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHh
Q 020367 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (327)
Q Consensus 184 G~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~ 263 (327)
|+++++++..++.++.++|+++++.+|++.+.+. +.+.++++.|+. ++|+.+.++++.++..+|..+..|++.
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a- 149 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA- 149 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999998997666444 456678999997 789998889999998888655555432
Q ss_pred hHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 264 ~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+ + .++...+. ..+.+++...+++.||++|+|+|+++|+||+|+++|+|+++++
T Consensus 150 ----~-~----~~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~ 202 (277)
T PRK12883 150 ----V-G----RIGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYI 202 (277)
T ss_pred ----h-c----cccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHH
Confidence 1 2 22322222 2334556678899999999999999999999999999998764
No 12
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.97 E-value=3.4e-30 Score=243.64 Aligned_cols=205 Identities=23% Similarity=0.310 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHH---HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCC
Q 020367 101 FLKKFHALYRFMRAYACAGVIIATTS---NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP 177 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~---g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~ 177 (327)
.+.+++.+.+++|+++++++.+.+.+ |..++...++ . +...++++++++++.+++|++||+.|+|+||+|+|
T Consensus 6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~---~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r 80 (289)
T COG0382 6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLP---S--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR 80 (289)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCc---h--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence 44566777777777777666665544 4444442222 1 34567888999999999999999999999999998
Q ss_pred --CCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367 178 --YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (327)
Q Consensus 178 --~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~ 255 (327)
+||+++|++|+++++.+..+++++++.+++.++++.+.+ .+++.++.++|. ++||.+.+++++++...+..
T Consensus 81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l-~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~ 153 (289)
T COG0382 81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLL-SLAALVLALAYP------FLKRFTFLPQLVLGLAFGLG 153 (289)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999766544 467888999994 69999999999999999877
Q ss_pred HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+..|+... .| ..+...+++.++..+|+.++++++|++|+|+|++.|++|+|+.+|++++.++
T Consensus 154 ~~~g~~a~-----~~----~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l 215 (289)
T COG0382 154 ALAGAAAV-----GG----SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALAL 215 (289)
T ss_pred HHHHHHHH-----hC----ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHH
Confidence 77776542 23 2244566777788899999999999999999999999999999999988653
No 13
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.97 E-value=3.3e-30 Score=242.85 Aligned_cols=204 Identities=21% Similarity=0.244 Sum_probs=165.5
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--CCCCCc
Q 020367 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPL 181 (327)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPl 181 (327)
++++|++++||++...+.+..+.|.++|.+...+ +. ..++++++.+++++++|++|||+|+|+|++| +|+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 3689999999999999988888888888654333 32 2566788999999999999999999999998 679999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (327)
Q Consensus 182 asG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~ 261 (327)
++|++|+++++.++.++.++++++++.++...+.+. ..+.++.+.|+. +||+..++++..+...+.++..|+.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~ 148 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV 148 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888888888887665443 345556789984 8999999999999988877777765
Q ss_pred HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
. +.|.. ......++..+..++|+.+.+++||++|+|+|+++|+||+|+++|+|+++++
T Consensus 149 a-----~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~ 206 (282)
T TIGR01475 149 A-----VIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKI 206 (282)
T ss_pred H-----HhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHH
Confidence 4 22321 1113445556677889999999999999999999999999999999887654
No 14
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=8.3e-30 Score=241.15 Aligned_cols=207 Identities=20% Similarity=0.227 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccC---CCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-
Q 020367 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL---ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK- 176 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~---~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk- 176 (327)
.++++++|++++||++.+.+....+.|.++|.... ..+++. .+++++++.+++++++|++|||+|+|+|++|+
T Consensus 4 ~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R 80 (291)
T PRK12874 4 FTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNPR 80 (291)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence 45689999999999999999999888888875211 122332 25667788899999999999999999999987
Q ss_pred -CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367 177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (327)
Q Consensus 177 -~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~ 255 (327)
++||+++|++|+++++.++.++.++++.+++.+++.++.+. +..+++...|+. +||+..++++.+++..|.+
T Consensus 81 T~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~ 153 (291)
T PRK12874 81 TANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGLA 153 (291)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHHH
Confidence 68999999999999999999998888888888887666554 345566789995 8999999999999998888
Q ss_pred HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+.+|+.. +.| ..+.+.+++.+..++|+.+.+++++++|+|+|+++|++|+|+++|++++.++
T Consensus 154 ~l~G~~a-----v~g----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~ 215 (291)
T PRK12874 154 PIAGVVA-----VLG----EIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFI 215 (291)
T ss_pred HHHHHHH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHH
Confidence 8888664 334 2344455566677899999999999999999999999999999999988754
No 15
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.97 E-value=1.5e-29 Score=237.55 Aligned_cols=205 Identities=19% Similarity=0.240 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCc
Q 020367 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL 181 (327)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPl 181 (327)
...++.+++.+||.+|+.++.++.+|...+.+. .|..+.. ++++++.....+.+.|.+|||+|+|+|++|+|+||+
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i 84 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW 84 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence 356778999999999999999999998777542 3321122 345556667788899999999999999999999999
Q ss_pred cccccChHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHH
Q 020367 182 ASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (327)
Q Consensus 182 asG~ls~~~a~~~~~~~~~l----~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~ 257 (327)
++|++|++++..+..++.++ ++.+++..|++.+.+ .+++.++.++||. ||+|+|++|++++++. ...|.+..
T Consensus 85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l-~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~p~~ 160 (292)
T PRK13595 85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLL-LLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYALPLA 160 (292)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHHHHH
Confidence 99999999998865555443 556677777655543 4567789999995 9999999999998886 34454433
Q ss_pred hHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.+. .+.|.+ +.+.+ .....+|..+.++++|++|+|+||+.|+||+|+++|+|++.++
T Consensus 161 ~~~------~~~g~~----~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~ 217 (292)
T PRK13595 161 LPA------LALGAP----VPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALY 217 (292)
T ss_pred HHH------HHcCCc----chHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHH
Confidence 331 233432 22222 2344677899999999999999999999999999999998753
No 16
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.3e-29 Score=240.38 Aligned_cols=209 Identities=17% Similarity=0.260 Sum_probs=164.9
Q ss_pred HhhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--C
Q 020367 99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--K 176 (327)
Q Consensus 99 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k 176 (327)
...+.++++|++++||++.+...++.+.|.++|.+..++ +. ..++.+++.+++++++|++||++|+|+|++| +
T Consensus 9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT 83 (300)
T PRK13106 9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT 83 (300)
T ss_pred hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence 335678999999999999999998888999888654333 32 2456778999999999999999999999998 5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHH
Q 020367 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (327)
Q Consensus 177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~ 256 (327)
++||+++|++|+++++.+..++.+.++.+++.+|+.++.+.. ++.++...|+. +||+..++++.+++..|..+
T Consensus 84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~ 156 (300)
T PRK13106 84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAV 156 (300)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHH
Confidence 689999999999999999877777888888888876665443 44455678984 89999999999999888766
Q ss_pred HhHHHHhhHHHhhCCCCc----cCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367 257 QFPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~----~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~ 325 (327)
..|+.. +.|.... ..+...+++.+...+|+.+.+++|+++|+|+|++.|+||+|+++| +++.+
T Consensus 157 ~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~ 223 (300)
T PRK13106 157 FSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALT 223 (300)
T ss_pred HHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHH
Confidence 677653 2232100 111223444455678999999999999999999999999999999 77654
No 17
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.97 E-value=2.4e-29 Score=237.43 Aligned_cols=206 Identities=19% Similarity=0.218 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHchhhhHH---HHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-
Q 020367 101 FLKKFHALYRFMRAYACAG---VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK- 176 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~---~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk- 176 (327)
..+++++|++++||++... ..++++.|.++|.... ..++. ..++++++.+++++++|++|||+|+|.|+.|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 3457899999999998765 4466777888875432 12232 25667888899999999999999999999754
Q ss_pred -CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367 177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (327)
Q Consensus 177 -~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~ 255 (327)
++||+++|+++++++..++.++.++++.+++.+|+..+.. .+++.++.+.||. .||+..++++..++..+..
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~ 151 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYL-SFIAVILIVLYPL------MKRFFYWPQLFLGFTFNMG 151 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence 5899999999999999999999999999998888655544 3456677899995 7888888998888877766
Q ss_pred HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+..|+.. +.| .++...+++.+..++|+.+.+++++++|+|+|+++|+||+|+++|+|++.++
T Consensus 152 ~l~~~~a-----~~g----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~ 213 (285)
T PRK12847 152 ILMAFAA-----VQN----QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYI 213 (285)
T ss_pred HHHHHHH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHH
Confidence 6666553 223 3455566667778899999999999999999999999999999999988764
No 18
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.97 E-value=4.2e-29 Score=236.37 Aligned_cols=207 Identities=16% Similarity=0.187 Sum_probs=164.7
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccc--chhc--cCCCCC
Q 020367 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDK--VNKPYL 179 (327)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~--e~Dr--~nk~~R 179 (327)
.+++|++++||+++..++++++.|.++|... .++++. ..++++++.++++.++|.+|||+|+ +.|+ .++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3688999999999999999999999888542 334442 3567788999999999999999998 4675 467899
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367 180 PLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (327)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~la~~l----g~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~ 255 (327)
|+++|++|++++..++..+.+++++++..+ ++ ..++..+++++++++||. ||.++|+++ ++++..++.+|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW-WLLLLGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence 999999999999988888887766665443 54 333444567788899996 888899988 5888888888865
Q ss_pred HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
...+.+.. ..+ .++...++..++.++++...++.||++|+|+|+++|+||+|+++|+|+++++
T Consensus 154 ~~~~~~~~-----~~~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~ 216 (293)
T PRK06080 154 IVLGTYYL-----QAG---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRL 216 (293)
T ss_pred HHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHH
Confidence 55554321 111 3455667777788899999999999999999999999999999999998764
No 19
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.97 E-value=4.4e-29 Score=235.04 Aligned_cols=204 Identities=14% Similarity=0.166 Sum_probs=160.2
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCCc
Q 020367 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL 181 (327)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPl 181 (327)
++++|++++||++.....++.+.|.+++.+... ++. ..++++++.+++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGV--SWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 368999999999999999999999988854322 232 24567788899999999999999999999976 69999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHH
Q 020367 182 ASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV 260 (327)
Q Consensus 182 asG~ls~~~a~~~~~~~~~l~l~la~~-lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~ 260 (327)
++|++|++++..++.+++++++.+++. +++.+.....+...+..+.||. ++||+++...+..++..+.++..|+
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~ 150 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGGFAGNAAALAGY 150 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 7764433333445567789996 6899998655555544445555554
Q ss_pred HHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 261 ~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+. ..| .++...+++.+.+++|+.+.....+++|+|+|+++|+||+|+++|+|+++++
T Consensus 151 ~a-----~~g----~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~ 207 (279)
T PRK12869 151 AS-----GTG----SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRA 207 (279)
T ss_pred HH-----HhC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHH
Confidence 43 223 3455556666777888888877788999999999999999999999988754
No 20
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=4.3e-29 Score=236.33 Aligned_cols=204 Identities=19% Similarity=0.182 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCC
Q 020367 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (327)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~R 179 (327)
-+++++|++++||++.+.+..+.+.|.++|..+.++ + ...++.+++.+++++++|++|||+|+|+|++|+ ++|
T Consensus 5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~---~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 79 (291)
T PRK12886 5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--A---SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR 79 (291)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence 357899999999999999988888898888654333 2 124566788999999999999999999999987 589
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhH
Q 020367 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (327)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg 259 (327)
|+++|++|++++..+...+.+.++.+++.+|++.+.+.+ ++.++.+.|+. +||+..++++..++..+.++..|
T Consensus 80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g 152 (291)
T PRK12886 80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLGA 152 (291)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHHH
Confidence 999999999999988777777776777778876665443 45556789994 79999999999998887776666
Q ss_pred HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
++. +.| .++...+++.+..++|+.+.+++++++|+|+|+++|+||+|+++|++++.++
T Consensus 153 ~~a-----~~g----~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~ 210 (291)
T PRK12886 153 WIA-----IRG----TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWI 210 (291)
T ss_pred HHH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHH
Confidence 553 234 3345556666777889999999999999999999999999999999988764
No 21
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=3.9e-29 Score=235.56 Aligned_cols=203 Identities=18% Similarity=0.164 Sum_probs=164.2
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--CCCCCc
Q 020367 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPL 181 (327)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPl 181 (327)
++|+|++++||++.+.++...+.|.++|.+...+ +. ..++.+++.+++.+++|++||+.|+|+|++| +++||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~--~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIH--PI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 4789999999999999999999999988653222 22 2345667888999999999999999999998 569999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (327)
Q Consensus 182 asG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~ 261 (327)
++|++|+++++.+..+++++++.+++.+|+.++.+.. ....+...|+ .+||+..+.++.+|...|..+..|+.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDP------FLKRYTAWRHIYMGSIIGLGVLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH------HHHhCccccHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999987665443 3444555566 48999999999999988877777765
Q ss_pred HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~ 325 (327)
. +.|.. .+....+++++...+|+.+.+++++++|+|+|++.|+||+|+++|++++.+
T Consensus 150 A-----v~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~ 206 (286)
T PRK12895 150 A-----VIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLY 206 (286)
T ss_pred H-----HcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHH
Confidence 3 33321 222233455667788999999999999999999999999999999998764
No 22
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.96 E-value=8e-29 Score=235.08 Aligned_cols=205 Identities=13% Similarity=0.120 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCC
Q 020367 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (327)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~R 179 (327)
++++++|++++||++++.+.++.+.|.++|.+... ++. ..++++++.+++++++|++|||+|+|.|+.|+ |+|
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~--~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R 81 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPGVP--PLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR 81 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence 45799999999999999999999999999864322 232 24667889999999999999999999999976 799
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH-HHHHH
Q 020367 180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN-GLLTQ 257 (327)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~la~~-lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~-g~~~~ 257 (327)
|+++|++|++++..++.++.++|+.+++. .+.....+..+......+.||. ++||++. ++..++... +.++.
T Consensus 82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l 155 (296)
T PRK04375 82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL 155 (296)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH
Confidence 99999999999999999999999988755 4654454333322335678996 6999996 554444444 35666
Q ss_pred hHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.|++. +.| .++...+++++..++|+...+..+.++|+|+|+++|+||+|+++|+++++++
T Consensus 156 ~g~~a-----~~g----~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~ 215 (296)
T PRK04375 156 IGWAA-----VTG----SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQ 215 (296)
T ss_pred HHHHH-----hCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHH
Confidence 66653 223 3455566667778889998999999999999999999999999999988764
No 23
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.96 E-value=4.2e-29 Score=236.35 Aligned_cols=204 Identities=18% Similarity=0.203 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHchhhhHHHH---HHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-
Q 020367 101 FLKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK- 176 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk- 176 (327)
.++++++|++++||++..... ++.+.|.++|.+..++ +. ..++++++.+++++++|++||++|+|+|+.++
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 346889999999999977666 4567777777654333 22 24566788899999999999999999998644
Q ss_pred -CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367 177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (327)
Q Consensus 177 -~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~ 255 (327)
++||+++|++|++++..++.++.++++.+++.+++..+.+. +.+.++.+.|+. .||+..++++.+++..+..
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence 38999999999999999999999999999999987666544 346667789985 7888888888888888876
Q ss_pred HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~ 325 (327)
+..|+.. +.| .++...+++++..++|+.+.+++++++|+|+|+++|+||+|+++|++++.+
T Consensus 153 ~l~g~~a-----~~g----~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~ 213 (290)
T PRK12870 153 VLISWSA-----VTG----HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEA 213 (290)
T ss_pred HHHHHHH-----HcC----CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHH
Confidence 6666553 233 334455566677789999999999999999999999999999999998764
No 24
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.1e-28 Score=234.26 Aligned_cols=206 Identities=16% Similarity=0.185 Sum_probs=165.1
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-----C
Q 020367 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----P 177 (327)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk-----~ 177 (327)
.++|.|++++||+++..++.+++.|.++|.....++++. ..++++++..++++++|.+|||+|.+.|..++ +
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 368899999999999999999999999987544556553 35778899999999999999999966555544 7
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHH
Q 020367 178 YLPLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (327)
Q Consensus 178 ~RPlasG~ls~~~a~~~~~~~~~l~l~la~~----lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g 253 (327)
+||+++|+++++++...+.++..+++.++.. .++ ..++..+++.++++.||. ||+++|+++ +|++.+++.+|
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~-~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g 154 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGI-GAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWS 154 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHH
Confidence 8999999999999999888877766655433 353 343444678889999996 899999887 59999999998
Q ss_pred HHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccc
Q 020367 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323 (327)
Q Consensus 254 ~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a 323 (327)
..+.+|.+.. ..+ .++...+...+...+++....+.||++|+|+|++.|+||+|+++|+|++
T Consensus 155 ~~~vlg~~~~-----~~~---~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a 216 (296)
T PRK05951 155 HMLVMGLIYV-----WLG---NLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA 216 (296)
T ss_pred HHHHHHHHHH-----HhC---cccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH
Confidence 7666776542 222 3444556666777888888999999999999999999999999999998
No 25
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=1.5e-28 Score=235.11 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=164.1
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC----CCCC
Q 020367 105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYLP 180 (327)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk----~~RP 180 (327)
++.|++++||++...++++++.|.++|.....++++. ..++++++.++.++++|.+|||+|.+.|..++ +.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 6789999999999999999999999986544455553 35677888899999999999999987666554 6799
Q ss_pred ccccccChHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHH
Q 020367 181 LASGEISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (327)
Q Consensus 181 lasG~ls~~~a~~~~~~~~~l~l~----la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~ 256 (327)
+++|.++++++...+..+++++++ +.+..|+ .++...+++++.+++||. ||+++||++ +|++.+++.+|+.+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~-~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSW-LLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence 999999999999988888777766 4555564 454556678889999996 899999999 69999999998765
Q ss_pred HhHHHHhhHHHhhCCCCccCcHHHH--------------------HHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccce
Q 020367 257 QFPVYVHIQKYVLGRPLEIFTRPLM--------------------FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSV 316 (327)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~~~~~~~i--------------------~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv 316 (327)
..|.+.. ++ + .++...+ +..+...+.+..+++.||++|+|+|+++|+||+|+
T Consensus 156 v~g~~yv-~t---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v 227 (317)
T PRK13387 156 FLLAVYI-NT---N----TITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY 227 (317)
T ss_pred HHHHHHH-hc---C----CCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee
Confidence 5655432 21 1 1121111 24556677778889999999999999999999999
Q ss_pred eecccccccc
Q 020367 317 MLGKERVSKL 326 (327)
Q Consensus 317 ~lG~~~a~~l 326 (327)
++|+|++.++
T Consensus 228 ~lG~~~a~~l 237 (317)
T PRK13387 228 YIGREKGVVL 237 (317)
T ss_pred eEcHHhHHHH
Confidence 9999998764
No 26
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.96 E-value=1.5e-28 Score=231.77 Aligned_cols=204 Identities=20% Similarity=0.202 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHchhhhHHHHHH---HHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--
Q 020367 102 LKKFHALYRFMRAYACAGVIIA---TTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-- 176 (327)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~---~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk-- 176 (327)
++++++|++++|++++..+.+. .+.|.++|.+..++ +. ..++++++.+++++++|++||++|+|+|+.++
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 3578999999998877666544 56677777554333 22 24556678889999999999999999998754
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHH
Q 020367 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (327)
Q Consensus 177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~ 256 (327)
++||+++|++|++++..++.++.++++++++.+++..+.+. +++.++.+.|+. .||+..++++..++..|.++
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence 58999999999999999999999999999988887555443 456667889974 78888889988888888766
Q ss_pred HhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.+|+.. +.| .++...+++++...+|+...++.++++|+|+|+++|+||+|+++|+|++.++
T Consensus 150 ~~g~~a-----~~~----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~ 210 (282)
T PRK12848 150 PMAFAA-----VQG----SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLII 210 (282)
T ss_pred HHHHHH-----HhC----CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHH
Confidence 667653 223 3455556666777889999999999999999999999999999999987653
No 27
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=2.1e-28 Score=230.91 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=162.0
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHhcccc-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCCc
Q 020367 105 FHALYRFMRAYACAGVIIATTSNSLLPVQT-LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL 181 (327)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~-~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPl 181 (327)
+++|+++.||++.+......+.+.+++... ...+++. ..++.+++.+++++++|.+||++|+|+|++|+ ++||+
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL 78 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence 689999999999988877766666655311 0122232 24667889999999999999999999999987 68999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (327)
Q Consensus 182 asG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~ 261 (327)
++|++|+++++.++..++++++.++..+++..+... .++++....|+. .||+..++++.+++..+.++..|++
T Consensus 79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~ 151 (284)
T PRK12888 79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAWI 151 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999998888888888888887655443 345556678984 7999999999998888776667765
Q ss_pred HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~ 325 (327)
. +.| .++...+++.+..++|+.+.+++++++|+|+|++.|+||+|+++|+|++.+
T Consensus 152 a-----~~g----~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~ 206 (284)
T PRK12888 152 A-----VTG----TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALW 206 (284)
T ss_pred H-----HcC----CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHH
Confidence 3 234 335556666777889999999999999999999999999999999998875
No 28
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.96 E-value=4.3e-28 Score=230.85 Aligned_cols=207 Identities=15% Similarity=0.212 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CC
Q 020367 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY 178 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~ 178 (327)
.+.++++|++++||+++..+.++++.|.+++.+. +.++.. .++++++.+++++++|++|||+|+|+|+.++ ++
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 3457899999999999999999999999988543 223322 4556788899999999999999999998753 58
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHH
Q 020367 179 LPLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (327)
Q Consensus 179 RPlasG~ls~~~a~~~~~~~~~l~l~la~-~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~ 257 (327)
||+++|++|+++++.++.++.++|+.++. ..+........+..++..+.||. ++||++..+++..++..+.++.
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l 158 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV 158 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence 99999999999999999999999988654 45654443333334445679995 6999999999988888888888
Q ss_pred hHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.|++. +.| .++...++++.++++|+.......++.|.|+|+++|++|+|+++|+|++++.
T Consensus 159 ~G~~a-----~~g----~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~ 218 (306)
T PRK13362 159 VGYCA-----VTG----QFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLH 218 (306)
T ss_pred HHHHH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHH
Confidence 88764 223 3355566667788899999999999999999999999999999999988753
No 29
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.96 E-value=5.7e-28 Score=230.82 Aligned_cols=210 Identities=17% Similarity=0.111 Sum_probs=169.0
Q ss_pred hHhhHHHHHHHHHHH---chhhhHHHHHHHHHHHHhccccCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 020367 98 LNVFLKKFHALYRFM---RAYACAGVIIATTSNSLLPVQTLA---DLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV 171 (327)
Q Consensus 98 ~~~~~~~l~~~~~l~---Rp~~~~~~~l~~~~g~llA~~~~~---~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~ 171 (327)
....+.++++|++++ ||......+++.+.|.++|.+... ..++. ..++++++.+++++++|++|||+|+|+
T Consensus 23 ~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~i 99 (314)
T PRK12878 23 DRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDI 99 (314)
T ss_pred hhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344668999999999 888999999999999999865311 22222 256778899999999999999999999
Q ss_pred hccCC--CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHH
Q 020367 172 DKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 249 (327)
Q Consensus 172 Dr~nk--~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~ 249 (327)
|+.++ ++||+++|++|++++..++.++.++|+.+.+..|++.+.+. ++++++.+.|+. .||+........+
T Consensus 100 D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~G 172 (314)
T PRK12878 100 DAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLG 172 (314)
T ss_pred ccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHH
Confidence 98755 58999999999999999999999999999888886555443 456677899984 7888777877777
Q ss_pred HhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 250 ~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+..+.++..|++. +.| .++...+++++...+|+...+.+++++|+|+|+++|+||+|+++|+++++++
T Consensus 173 l~~~~~~l~g~~a-----~~g----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~ 240 (314)
T PRK12878 173 LAFSWGALMGWAA-----HFG----SLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWL 240 (314)
T ss_pred HHHHHHHHHHHHH-----HhC----CCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHH
Confidence 7766666677654 234 3344455556667889999999999999999999999999999999998764
No 30
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.96 E-value=8.1e-28 Score=226.43 Aligned_cols=202 Identities=17% Similarity=0.148 Sum_probs=156.0
Q ss_pred HHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCCccc
Q 020367 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLAS 183 (327)
Q Consensus 106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPlas 183 (327)
|+|++++||+++..+.++++.|.++|.+.. +.++. ..++++++.+++++++|++|||+|+|.|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 468999999999999999999999986542 22332 25667889999999999999999999999865 7999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH-HhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367 184 GEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIF-VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (327)
Q Consensus 184 G~ls~~~a~~~~~~~~~l~l~la-~~lg~~~~~~~ll~~~~-l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~ 261 (327)
|++|++++..++.++.++|+.+. +.+++....+. +++.+ ..+.||. .+||++..+.+..++..+.++..|++
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~ 150 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA 150 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998844 45776544433 34444 4789995 48999887666665544455556654
Q ss_pred HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
. ..| .++...+++.....+|+........++|+|+|+++|+||+|+++|+|++.++
T Consensus 151 a-----~~g----~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~ 206 (280)
T TIGR01473 151 A-----VTG----SISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQ 206 (280)
T ss_pred H-----hcC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHH
Confidence 3 123 3455555566677888877766777899999999999999999999988653
No 31
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.96 E-value=8.9e-28 Score=226.36 Aligned_cols=201 Identities=19% Similarity=0.161 Sum_probs=156.6
Q ss_pred HHHHHHHchhhhHHH---HHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCC
Q 020367 106 HALYRFMRAYACAGV---IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLP 180 (327)
Q Consensus 106 ~~~~~l~Rp~~~~~~---~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RP 180 (327)
++|.+++|++++..+ .++.+.|.++|.+.....++. ..++.+++..++++++|++|||+|+|.|+.++ ++||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 567888877776555 444566777775421111122 13556677889999999999999999998754 5899
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHH
Q 020367 181 LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV 260 (327)
Q Consensus 181 lasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~ 260 (327)
+++|+++++++..++.++.++++.+++.+|+..+... ++++++.+.|+. .||+..++++..++..+..+..|+
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~ 151 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW 151 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887655444 567777999994 899998999999888887777776
Q ss_pred HHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367 261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 261 ~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~ 325 (327)
+. +.| .++...+++.+...+|+.+.+.+++++|+|+|+++|+||+|+++|+|++++
T Consensus 152 ~a-----~~g----~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~ 207 (281)
T TIGR01474 152 AA-----VTG----DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPW 207 (281)
T ss_pred HH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHH
Confidence 53 234 234444545566788999999999999999999999999999999988754
No 32
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.7e-27 Score=224.84 Aligned_cols=205 Identities=18% Similarity=0.143 Sum_probs=159.7
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHH---HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-
Q 020367 101 FLKKFHALYRFMRAYACAGVIIATTS---NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK- 176 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~---g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk- 176 (327)
.++++++|++++||+++.++.+.+.+ |.+++.+..++ + ...++++++++++.+++|++||+.|+|+|+.|+
T Consensus 3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~--~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R 77 (294)
T PRK12873 3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS--L---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVER 77 (294)
T ss_pred chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 34578999999999999988777543 55555332222 2 225678899999999999999999999999865
Q ss_pred -CCCCccccccChHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHh
Q 020367 177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251 (327)
Q Consensus 177 -~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~l----g~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~ 251 (327)
++||+++|++++++++.++.++.++++.+.+.+ ++..+.+. +++++....|+. +||+....++..++.
T Consensus 78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~ 150 (294)
T PRK12873 78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALC 150 (294)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHH
Confidence 599999999999999999999999999888766 43444433 344556789995 899988899999988
Q ss_pred HHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccc
Q 020367 252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVS 324 (327)
Q Consensus 252 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~ 324 (327)
.+.++.+||.. +.|.. .+....+++++..++|+.+.+++++++|+|+|+++|++|+|+++|++..+
T Consensus 151 ~a~~~l~gw~A-----v~g~~--~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~ 216 (294)
T PRK12873 151 WGFAVLIPWAA-----AEGSL--NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALK 216 (294)
T ss_pred HHhHHHHHHHH-----HhCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHH
Confidence 88877787653 34432 22223444456778999999999999999999999999999999986544
No 33
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.95 E-value=4.7e-27 Score=222.08 Aligned_cols=203 Identities=19% Similarity=0.168 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHchhhhHHHHHHH---HHHHHhccc-c-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC
Q 020367 102 LKKFHALYRFMRAYACAGVIIAT---TSNSLLPVQ-T-LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (327)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~---~~g~llA~~-~-~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk 176 (327)
++++++|+|++|.+......+.. ..|..++.. + .++ +. ..++.+++.+++.+++|++||++|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~--~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~ 77 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD--LK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVE 77 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence 35889999999999876665544 345555532 2 222 22 24567788899999999999999999999864
Q ss_pred --CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHH
Q 020367 177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (327)
Q Consensus 177 --~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~ 254 (327)
|+||+++|++|+++++.+..++.++++.+++.++...+... +++.++.+.|+. +||+..++++..++..+.
T Consensus 78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~ 150 (289)
T PLN02809 78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW 150 (289)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence 59999999999999999999999999999998887666544 456667889994 899999999998888777
Q ss_pred HHHhHHHHhhHHHhhCCCCccCcHHHH-HHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367 255 LTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i-~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~ 325 (327)
++.+|+.. +.|. .+...+ .+.....+|+.+.+++++++|+|+|+++|++|+|+++|++...+
T Consensus 151 ~~l~g~~a-----v~g~----~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~ 213 (289)
T PLN02809 151 GALLGWAA-----VKGS----LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLW 213 (289)
T ss_pred HHHHHHHH-----HhCC----CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHH
Confidence 77777643 3443 232333 25556678899999999999999999999999999999995544
No 34
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.95 E-value=6.7e-27 Score=222.25 Aligned_cols=208 Identities=15% Similarity=0.116 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhccCCCCC
Q 020367 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYL 179 (327)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e--~Dr~nk~~R 179 (327)
.++++.|++.+||+++..++.+++.|.++|.....++++. .+++++++..+.+.++|.+|||+|.+ .|+. ++.
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~- 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH- 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence 4678899999999999999999999999987654566653 36778899999999999999999986 6773 222
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367 180 PLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (327)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~la----~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~ 255 (327)
...++..++++....+.+++++++.++ +..| |+++...+++++.+++||. ||+++|++++ |++.+++.+|..
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~l 159 (304)
T PRK07419 84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGPL 159 (304)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhheccC--CCcccCCCCc-hHHHHHHHHHHH
Confidence 233455578888888777776666544 3345 4555556678899999996 8999999995 999999999976
Q ss_pred HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+..|.+.. ..+ .++...+...+.+++++..+.+.||++|+|+|+++|+||+|+++|+|+++++
T Consensus 160 ~v~g~~yv-----~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l 222 (304)
T PRK07419 160 AVAAALYS-----QTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQL 222 (304)
T ss_pred HHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHH
Confidence 66666542 222 4566667777788888899999999999999999999999999999999764
No 35
>PRK08238 hypothetical protein; Validated
Probab=99.95 E-value=3.2e-27 Score=236.89 Aligned_cols=225 Identities=18% Similarity=0.239 Sum_probs=174.6
Q ss_pred hhccccc-cCcCeeecCCCcccccCcCCCCCCcccchhhhHhhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCC
Q 020367 60 NKIASSR-NCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL 138 (327)
Q Consensus 60 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~ 138 (327)
..++-|+ ++++++||++++.+.. .+....+...++..+.++++|++++|||||++|++.++ +.+++ +.+.+
T Consensus 150 ~Dlp~~~~A~~av~Vn~~~~l~~~-----a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~- 221 (479)
T PRK08238 150 ADLPVWAAARRAIVVGASPGVARA-----ARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGD- 221 (479)
T ss_pred HHHHHHHhCCCeEEECCCHHHHHH-----HHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCC-
Confidence 3344799 9999999997765333 11123467778888899999999999999999999876 44444 54433
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--CCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 020367 139 TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIW 216 (327)
Q Consensus 139 ~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~ 216 (327)
+..+...++++++++++.+++|++||++|+|+||.| ||+||++||++|+++++.++.+++++|+++++.+++ .+.+
T Consensus 222 -~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~-~~~~ 299 (479)
T PRK08238 222 -LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP-AFLL 299 (479)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 333445778899999999999999999999999997 789999999999999999999999999999999886 5545
Q ss_pred HHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHH
Q 020367 217 AVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAF 296 (327)
Q Consensus 217 ~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 296 (327)
.++.+++++++||. ++||+++++++++++..+..+..|+.. .+. +.+.+++ ++..++.....+
T Consensus 300 ~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~~-----~~s~wll-~~~~~~~l~la~ 362 (479)
T PRK08238 300 VLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IGV-----ALSFWLL-AFSMFFFLSLAL 362 (479)
T ss_pred HHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hcc-----CHHHHHH-HHHHHHHHHHHH
Confidence 56678889999997 799999999999998887666666442 121 2222322 223344566788
Q ss_pred HHhcCChHHHHHcCC
Q 020367 297 IKDLHDVDGDKKFGI 311 (327)
Q Consensus 297 ~~di~DiegD~~~G~ 311 (327)
.|...|+++++..|.
T Consensus 363 ~KR~~El~~~~~~~~ 377 (479)
T PRK08238 363 VKRYTELRRALQRGK 377 (479)
T ss_pred HHhHHHHHHHHhcCC
Confidence 999999999988885
No 36
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=7.3e-27 Score=220.72 Aligned_cols=206 Identities=13% Similarity=0.160 Sum_probs=161.5
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhcc------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC
Q 020367 103 KKFHALYRFMRAYACAGVIIATTSNSLLPV------QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (327)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~------~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk 176 (327)
++++.|.++.|.++.+..+-....|.++|. ++.-+. |. +..+++..++.+++.+++|++||+.|+|+|++|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~ 79 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSL-GG-IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNP 79 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCC-CC-HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCC
Confidence 368899999999999888777788888885 220001 11 2235677889999999999999999999999998
Q ss_pred --CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHH
Q 020367 177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (327)
Q Consensus 177 --~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~ 254 (327)
++||+++|++|+++++.++..+.++++++++.+|+.++.+.. +++++.+.||. +||+..++++..++..+.
T Consensus 80 RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~ 152 (300)
T PRK12876 80 RTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYYL 152 (300)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHHH
Confidence 599999999999999999988888888888889976665554 45556689994 999999999988888776
Q ss_pred HHHhHHHHhhHHHhhCCCCccCcH----HHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367 255 LTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 255 ~~~lg~~~~~~~~v~g~~~~~~~~----~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~ 325 (327)
.+..|+.. +.+++ .+. ..++..+..++|+.+.+++++++|+|+|++.|+||+|+++|++++.+
T Consensus 153 ~~l~~~~A-----v~~~~---~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ 219 (300)
T PRK12876 153 AILMNFFA-----IIETP---LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIR 219 (300)
T ss_pred HHHHHHHH-----HhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHH
Confidence 66666553 33431 122 12333445577788999999999999999999999999999998743
No 37
>PLN02922 prenyltransferase
Probab=99.95 E-value=1e-26 Score=222.02 Aligned_cols=216 Identities=19% Similarity=0.226 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhccCCCCC
Q 020367 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYL 179 (327)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e--~Dr~nk~~R 179 (327)
.++++.|+++.||+++..++.+++.|.++|......+++. ..++++++.++.+.++|.+|||+|.+ .|+.++..+
T Consensus 12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~ 88 (315)
T PLN02922 12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV 88 (315)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence 3578899999999999999999999999987654456654 36778899999999999999999975 576433221
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367 180 PLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (327)
Q Consensus 180 PlasG~ls~~~a~~~~~~~~~l~l~la~~l----g~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~ 255 (327)
.-..| ++++....+..++++++...+.+ +.|.+++..+++++.+++||. ||+++|++++ |++.+++.+|..
T Consensus 89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l 163 (315)
T PLN02922 89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPL 163 (315)
T ss_pred CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHH
Confidence 12233 89999888777776666433222 225565666788999999996 8999999995 898889999976
Q ss_pred HHhHHHHhhHHHhhCCC-Cc--cCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 256 TQFPVYVHIQKYVLGRP-LE--IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 256 ~~lg~~~~~~~~v~g~~-~~--~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
++.|.|.. ++...+.. .. .++...++..++..+++..++++||+||+|+|+++|+||+|+++|+|+++++
T Consensus 164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l 236 (315)
T PLN02922 164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRV 236 (315)
T ss_pred HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHH
Confidence 66776643 22111110 00 1344556677888899999999999999999999999999999999998764
No 38
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=218.02 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=144.0
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCcccc
Q 020367 105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG 184 (327)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG 184 (327)
+|.+++++||.+|+.+.+++..|+++|.+ .++ +.. .+.++......+.+.|.+|||+|.|.|..|++++.. .|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~~--~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EID--WLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCC-CCC--hHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 36789999999999999999999999833 232 321 122222234455555778999999999999765443 48
Q ss_pred ccChHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhH
Q 020367 185 EISMGTGIAITLASAL-----MSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (327)
Q Consensus 185 ~ls~~~a~~~~~~~~~-----l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg 259 (327)
.+++++.......+.+ .++.+.+..+ +.++....++++.++.||. ||.|+|++++.|+++.+........+|
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G 150 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGS-WASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYG 150 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHH
Confidence 8999887444333332 2223333324 4454555678889999996 899999999988876655443334454
Q ss_pred HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.+. + +. .++...++....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.++
T Consensus 151 ~~~-----~-~~---~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~ 208 (282)
T PRK13105 151 LVL-----A-GA---PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRL 208 (282)
T ss_pred HHH-----h-hc---cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHH
Confidence 432 2 32 3344556666777889999999999999999999999999999999998764
No 39
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.95 E-value=1.8e-26 Score=217.68 Aligned_cols=199 Identities=18% Similarity=0.125 Sum_probs=159.3
Q ss_pred chhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhcc--CCCCCCccccccCh
Q 020367 113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV--NKPYLPLASGEISM 188 (327)
Q Consensus 113 Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e--~Dr~--nk~~RPlasG~ls~ 188 (327)
||+++..++.+++.|.++|..+. .+++. ..++++++.++++.++|.+|||+|.+ .|+. .+|.|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999987653 56553 36778899999999999999999984 3543 35789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hhH-----HHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhH
Q 020367 189 GTGIAITLASALMSLAYAVM----IRS-----PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (327)
Q Consensus 189 ~~a~~~~~~~~~l~l~la~~----lg~-----~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg 259 (327)
+++..++.+++++++.++.. .++ +++++..+++++.+++||. ||+++|+++ +|++.+++.+|...++|
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence 99999888887766655443 342 2444455678888999996 899999999 59999999999766676
Q ss_pred HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.+.. ..+ .++...++..+...+++..+++.||++|+|+|+++|+||+|+++|+|+++++
T Consensus 154 ~~yv-----q~~---~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l 212 (284)
T TIGR00751 154 TQYL-----QAH---RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMY 212 (284)
T ss_pred HHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHH
Confidence 5542 222 4565566666777888889999999999999999999999999999999764
No 40
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=1.5e-25 Score=212.59 Aligned_cols=203 Identities=16% Similarity=0.188 Sum_probs=141.8
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC-------
Q 020367 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN------- 175 (327)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n------- 175 (327)
+++++|++++||++++....+++.|.++|......+++.. .+++++...++..++|++|||+|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4689999999999888777777788888732111233322 232344445555677999999999999864
Q ss_pred --C--CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHhhhccCCCCccccccc----cchh
Q 020367 176 --K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGN----SFLA 244 (327)
Q Consensus 176 --k--~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~---~~~~~ll~~~~l~~~YS~~lpp~rlKr~----~~l~ 244 (327)
| ++||+++|++|+++++.++.++.++|+.++..++.. ..+...+.+.++++.|+. |++ | .+
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~-------~kr~~~~p-~~ 151 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV-------KKRNQKYP-VA 151 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccccccc-HH
Confidence 3 489999999999999999999999888887765532 222222445567778884 333 4 22
Q ss_pred hHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccc
Q 020367 245 AFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVS 324 (327)
Q Consensus 245 ~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~ 324 (327)
.+..+...+.++..| +. ..| ..+...++..++.++|+.+++.++|++|+|+|++.|+||+|+++|+++++
T Consensus 152 ~l~G~~~~~~~~~~g-~~-----~~g----~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~ 221 (297)
T PRK12871 152 QLLGRTDFTLFPAAG-YL-----CYG----QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTM 221 (297)
T ss_pred HHHHHHHHHHHHHHH-HH-----HhC----CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHH
Confidence 222323333334444 22 234 23444555567778899999999999999999999999999999999887
Q ss_pred cc
Q 020367 325 KL 326 (327)
Q Consensus 325 ~l 326 (327)
++
T Consensus 222 ~~ 223 (297)
T PRK12871 222 YW 223 (297)
T ss_pred HH
Confidence 54
No 41
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.94 E-value=2.1e-25 Score=210.48 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=156.0
Q ss_pred HHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccch--hccCCCCCCccccc
Q 020367 108 LYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV--DKVNKPYLPLASGE 185 (327)
Q Consensus 108 ~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~--Dr~nk~~RPlasG~ 185 (327)
|++.+||+++..++.+++.|.++|.....++++.. .++++++..+.+.++|.+|||+|.+. |+.+. ....++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence 78899999999999999999999976544566543 56788899999999999999999764 76422 1122233
Q ss_pred cChHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367 186 ISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (327)
Q Consensus 186 ls~~~a~~~~~~~~~l~l~la----~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~ 261 (327)
.++++....+.+++++++.++ +..+ |+++...+++++.+++||. ||+++|++++ |++.+++.+|..++.|.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence 456777776666665555444 4445 4555556678899999996 8999999995 999999999976666655
Q ss_pred HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.. ..+ .+++..++..+.+++.+..+.+.||+||+|+|+++|+||+|+++|+|++.++
T Consensus 153 yv-----qt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l 209 (285)
T TIGR02235 153 YA-----QSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKI 209 (285)
T ss_pred HH-----hCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHH
Confidence 42 222 4566667777788888999999999999999999999999999999998764
No 42
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=2.3e-25 Score=209.78 Aligned_cols=203 Identities=18% Similarity=0.222 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHH--HHHHHHHHHhhhccccchhccCCC
Q 020367 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPA--VLMHIYVVAINQLSDVEVDKVNKP 177 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~lla~la~--~l~~~a~~~~Nd~~D~e~Dr~nk~ 177 (327)
.+.+++.|+++.||++|..++.+++.|.++|.+...+ +++. ++++++. +..+..+|++||++|+|+||.|++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-----~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~pr 78 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-----AVALFAYFLFPANVFLYGVNDVFDADTDELNPK 78 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-----HHHHHHHHHHHHHHHHhcchhhhhhhccccCCC
Confidence 4568899999999999999999999999999765332 2331 1112221 234456788999999999999876
Q ss_pred CCCccccccChHHHH---H-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHH
Q 020367 178 YLPLASGEISMGTGI---A-ITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (327)
Q Consensus 178 ~RPlasG~ls~~~a~---~-~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g 253 (327)
++. |+...++.. . ......++++.+.+..++... ..++.+++++++||. ||+|+|++++.+..+.+.. .
T Consensus 79 k~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~-~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~-~ 151 (282)
T PRK12875 79 KDR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAW-PALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY-I 151 (282)
T ss_pred ccC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHH-H
Confidence 653 221112221 1 122233344444444443222 233567888999996 8999999998776554432 2
Q ss_pred HHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 254 ~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
.++..+++.+ .| .++...++ +..++|+.+.+++||++|+|+|+++|+||+|+++|+|+++++
T Consensus 152 ~~~~~~y~~~-----tg----~~~~~~l~--~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~ 213 (282)
T PRK12875 152 LPGVAAYALV-----SG----SLPPLLAV--AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAY 213 (282)
T ss_pred HHHHHHHHHH-----cC----CCcHHHHH--HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHH
Confidence 3333443321 22 33433332 234688899999999999999999999999999999998753
No 43
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=1.3e-25 Score=211.58 Aligned_cols=205 Identities=24% Similarity=0.275 Sum_probs=143.5
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCcc
Q 020367 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA 182 (327)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPla 182 (327)
+.+++++++.|+.+.+........+.. .....+. +. ....+++.++.+.++|.+||++|+|+|+.|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~-~~----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYM--ASLLLGL-PI----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHcC-hh----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 457899999999988777666554321 1111111 11 2345677888999999999999999999999999988
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhhccCCCCcc-ccccccchhhHHHHHhHHHH-HHhH
Q 020367 183 SGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLL-RWKGNSFLAAFCMVSLNGLL-TQFP 259 (327)
Q Consensus 183 sG~ls~~~a~~~~~~~~~l~l~la~-~lg~~~~~~~ll~~~~l~~~YS~~lpp~-rlKr~~~l~~l~~~~~~g~~-~~lg 259 (327)
+++.....+..+..+...+++.+.. ..+++.+ +..+++.++++.||. ||. ++||.|.+++++++..||.. +..+
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFA-LIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 5544444443334444444444332 2365444 444567778999996 444 68999999999999999854 3334
Q ss_pred HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
++. .+. .++...+...++++++.+.++.++|++|+|+|+++|++|+|+++|+|+++++
T Consensus 152 ~~~------~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~ 209 (285)
T PRK12872 152 VYY------YQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKF 209 (285)
T ss_pred HHh------ccc---ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHH
Confidence 332 121 2344455555666777888999999999999999999999999999999875
No 44
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.93 E-value=9.1e-25 Score=204.61 Aligned_cols=208 Identities=17% Similarity=0.153 Sum_probs=162.9
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhcc----CC
Q 020367 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NK 176 (327)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e--~Dr~----nk 176 (327)
++.+.|+++.|||++...+.+++.|.++|......+++ +..+++++++.+++..+|..|||.|.+ .|.. .+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 35589999999999999999999999999876544544 347889999999999999999999974 5542 33
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367 177 PYLPLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (327)
Q Consensus 177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~la----~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~ 252 (327)
..+-+...+++++..+.+.+.++..+.+++ ...++ .+++..+++++++++|+. +|+++++.| +|++..++.+
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff 158 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF 158 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence 345556667777777777766665554444 33454 466667789999999997 899999999 5999999999
Q ss_pred HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~ 325 (327)
|....+|.|+. |+ + .+++..++..++..+.+..++..||++|+|.|+++|++|+|+++|+++++.
T Consensus 159 G~l~v~g~~yi-qt---~----~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~ 223 (303)
T COG1575 159 GPLIVLGAYYI-QT---G----RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARK 223 (303)
T ss_pred HHHHHHHHHHH-hc---c----cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHH
Confidence 97555554432 21 1 456566677778888888999999999999999999999999999999875
No 45
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.93 E-value=1.6e-25 Score=206.05 Aligned_cols=167 Identities=28% Similarity=0.472 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhcc--CCCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 020367 146 LMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIF 223 (327)
Q Consensus 146 ~lla~la~~l~~~a~~~~Nd~~D~e~Dr~--nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~ 223 (327)
....+++.++.+.++|.+||+.|+|+|+. |||+||+++|+++++++...+.++.++++.+++..+++.+.+ .+++.+
T Consensus 25 ~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~-~~~~~~ 103 (257)
T PF01040_consen 25 FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLI-LLLGFL 103 (257)
T ss_pred HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHH-HHHHHH
Confidence 45566677799999999999999999999 899999999999999999999999999999998888655544 456677
Q ss_pred HhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 020367 224 VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDV 303 (327)
Q Consensus 224 l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~Di 303 (327)
++++|| ||+|+||++++++++.++.++..+.+|++. .++ ..+.+.+....+..++.......+|++|+
T Consensus 104 ~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 171 (257)
T PF01040_consen 104 LGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG---DPPPPPFLLAIFFFLLIFAIMFFNDIRDI 171 (257)
T ss_pred HHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC---cccHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 789999 678999999999999999888766666553 222 22334444455556777778888899999
Q ss_pred HHHHHcCCcccceeeccccccc
Q 020367 304 DGDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 304 egD~~~G~~Tlpv~lG~~~a~~ 325 (327)
|+|++.|+||+|+++|++++++
T Consensus 172 ~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 172 EGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHcCCcchHHHHHHHHHHH
Confidence 9999999999999999999864
No 46
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=7.1e-24 Score=200.61 Aligned_cols=151 Identities=21% Similarity=0.284 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--CCC
Q 020367 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPY 178 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k~~ 178 (327)
.++++++|++++||++|++|++.+.++ +++.. ..+ +..+...++++++++++++++|++||++|+|+||.| ||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~-~~~--~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGN-LLN--PGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHh-hcc--cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 346889999999999999999977654 44432 222 112334677888889999999999999999999995 889
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHh
Q 020367 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (327)
Q Consensus 179 RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~l 258 (327)
||+++|++++++++.++.+++++|+++++.+++..+ +..+.++++.++||. ++|+++++++++++..++..+..
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~-~~~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~ 156 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLA-LVLLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA 156 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998886444 334678888899997 79999999999998877765555
Q ss_pred HHH
Q 020367 259 PVY 261 (327)
Q Consensus 259 g~~ 261 (327)
|..
T Consensus 157 G~~ 159 (295)
T PRK12324 157 GGV 159 (295)
T ss_pred HHH
Confidence 543
No 47
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.91 E-value=1.9e-23 Score=195.92 Aligned_cols=209 Identities=11% Similarity=0.110 Sum_probs=135.8
Q ss_pred HHHHHHHHHHchhh---hHHHHHHHHHHHHhc--cccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCC
Q 020367 103 KKFHALYRFMRAYA---CAGVIIATTSNSLLP--VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP 177 (327)
Q Consensus 103 ~~l~~~~~l~Rp~~---~~~~~l~~~~g~llA--~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~ 177 (327)
++++-|.|-+=|-. .+...+. +..+.+. .++..++.+ ..+.+++++..++..+++|++|||+|+|+||+|+|
T Consensus 3 k~~~iy~~e~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P 79 (299)
T PRK13592 3 KRLNVYLKEMYPLLPRLILSLTLF-FEIYMITLLSNHISSFRI--GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFP 79 (299)
T ss_pred hhHHHHHHHhccchhhhHHHHHHH-HHHHHHhhhccCCCCCCC--chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCC
Confidence 35667777765543 2222222 2222221 122234333 23567777788888999999999999999999999
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367 178 YLPLASGEISMGTGIAITLASALMSLAYAVMI--RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (327)
Q Consensus 178 ~RPlasG~ls~~~a~~~~~~~~~l~l~la~~l--g~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~ 255 (327)
+||+|||++|++++..++..+.++++.++... +...++ .+.++.++++ +. ++|+.++.+|+.++...|.+
T Consensus 80 ~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~-i~~lY~~lm~--a~-----~~K~~~l~gNl~Va~ltg~~ 151 (299)
T PRK13592 80 HRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFL-FLYIYGTLMS--FW-----FFKRDKIQNSLPLALVTHNP 151 (299)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HH-----HHcccCCCcchhhhhhccch
Confidence 99999999999999999999988887776555 211111 1122222222 65 69999999999999988865
Q ss_pred HHhH--HHHhh-HHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 256 TQFP--VYVHI-QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 256 ~~lg--~~~~~-~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+..| ++... .....|.+. .....+++.+..++...++|+.+|++| |||++ |.+|+|+++|.|+|.++
T Consensus 152 f~~g~~~~~~~fg~~~~g~~~--~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~i 221 (299)
T PRK13592 152 VMMILNLYTISFVCYKYNLPL--LSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRF 221 (299)
T ss_pred hhhchhhhhhhhhhhhcccch--hhHHHHHHHHHHHHHHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHH
Confidence 5333 22110 011123211 111112333344555689999999999 88886 59999999999998754
No 48
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.90 E-value=1.1e-22 Score=192.24 Aligned_cols=159 Identities=23% Similarity=0.234 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccC
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSV 230 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~ 230 (327)
+++.+...++|++|||+|+|+|++|+|+||.+ +++.+..++.+..++|+++++..|+ .+ + .+++.+.+++||.
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~-~l-l-~ll~~l~g~lYS~ 137 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGM-LL-L-AFLPFITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhH-HH-H-HHHHHHHHHHhcC
Confidence 45567789999999999999999999999986 7888999999999999999999885 33 2 3467778999996
Q ss_pred CC--Cc--cccccccchhhHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 020367 231 QL--PL--LRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGD 306 (327)
Q Consensus 231 ~l--pp--~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD 306 (327)
++ +| +++|+++.+|++.+++.||.....+ . +. ..+ .+ ........+.....++++.+||++|+|||
T Consensus 138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~-~--g~--~~~----~~-~~~~~i~l~~~~~l~~~~iindirDiEGD 207 (307)
T PRK13591 138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI-A--GS--YCG----SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGD 207 (307)
T ss_pred CCCCCCccccccCCCchhHHHHHHHHHHHHHHH-H--Hh--hhh----hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence 42 24 4889999999999999998633221 0 00 001 11 01111112222233667789999999999
Q ss_pred HHcCCcccceeecccccccc
Q 020367 307 KKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 307 ~~~G~~Tlpv~lG~~~a~~l 326 (327)
++.|++|+|+++|+++|+++
T Consensus 208 r~~G~kTLPV~lG~~~A~~l 227 (307)
T PRK13591 208 TLAGIKTLPVSLGEQKTRNL 227 (307)
T ss_pred HHcCCeeEEEEECHHHHHHH
Confidence 99999999999999999864
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-22 Score=188.88 Aligned_cols=207 Identities=16% Similarity=0.161 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CC
Q 020367 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY 178 (327)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~ 178 (327)
.+.++|+|+++++|..+..++++.+.|+++|... ..++.. ++.+.++..++..+++.+|+++|+|+|++++ ++
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 4578999999999999999999999999999852 223432 5677889999999999999999999999965 58
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHH
Q 020367 179 LPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (327)
Q Consensus 179 RPlasG~ls~~~a~~~~~~~~~l~l~la-~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~ 257 (327)
||+++|++++++++.++.++.++|+.+. +..|+.+-.+.++..++..+.||. .+||+.....+..++..+.|+.
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~NiviGg~aGa~Ppl 163 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQNIVIGGFAGAMPPL 163 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcccceeeeecccccccc
Confidence 9999999999999999999999999987 667765444444555667789997 6899987655555555557888
Q ss_pred hHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+||.. +.|. .+...+++++++++|+-..-..-.+.-.|+.+++|+..+|++-|++.+++-
T Consensus 164 iGwaA-----vtg~----~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~ 223 (304)
T COG0109 164 IGWAA-----VTGS----ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQ 223 (304)
T ss_pred ceeee-----eeCC----CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHH
Confidence 88764 4453 344555566677777643333334555677799999999999999998764
No 50
>PLN02776 prenyltransferase
Probab=99.88 E-value=2.8e-21 Score=185.45 Aligned_cols=188 Identities=17% Similarity=0.074 Sum_probs=145.9
Q ss_pred HHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCCccccccCh
Q 020367 111 FMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLASGEISM 188 (327)
Q Consensus 111 l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPlasG~ls~ 188 (327)
+++|.....++++.+.|+++|.+...+ +. .+++.+++..++.+++|++||++|+|+|+.|+ ++||+++|++++
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAID--LP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 367888999999999999998654333 22 24567789999999999999999999999865 599999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHH-HHHHhHHHHhhHH
Q 020367 189 GTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG-LLTQFPVYVHIQK 266 (327)
Q Consensus 189 ~~a~~~~~~~~~l~l~l-a~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g-~~~~lg~~~~~~~ 266 (327)
++++.+++++.++|+.+ ++.+|+.++.+..+..++....||. +||+..+. ..+|...| .++.+||..
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~A---- 144 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWAA---- 144 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHHHH----
Confidence 99999999999988854 5667866665443323334568994 89999765 57777766 677777664
Q ss_pred HhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeec
Q 020367 267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG 319 (327)
Q Consensus 267 ~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG 319 (327)
+.| .++...+++++.+++|+........+.|.|+|+++|++++|+.-+
T Consensus 145 -vtg----~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~ 192 (341)
T PLN02776 145 -ASG----QLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADA 192 (341)
T ss_pred -HcC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCcccc
Confidence 334 345566777778899998766666788888999999999999763
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.77 E-value=3.3e-19 Score=163.02 Aligned_cols=214 Identities=18% Similarity=0.162 Sum_probs=155.5
Q ss_pred hhhhHhhHHHHHHHHHHHchhhhHHHHHHHHH---HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 020367 95 NSFLNVFLKKFHALYRFMRAYACAGVIIATTS---NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV 171 (327)
Q Consensus 95 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~---g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~ 171 (327)
.+..+..+.+++.|.+++|....+++.+.+.+ ..++|... ... +. +.-+.+.-++.++|.+++|.+||++|.|.
T Consensus 54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g~~-p~-~~mL~LFG~GAllMRgAGCtINDlwDkdl 130 (353)
T KOG1381|consen 54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-GLL-PS-IKMLALFGVGALLMRGAGCTINDLWDKDL 130 (353)
T ss_pred hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-Ccc-ch-hHHHHHhcccHHHhccCCceehhhhhhhh
Confidence 34555566779999999999988888666533 34555532 111 21 22233344678999999999999999999
Q ss_pred hcc--CCCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHH
Q 020367 172 DKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 249 (327)
Q Consensus 172 Dr~--nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~ 249 (327)
|.. +.+.||+++|++++++++.+..+.+.+|+.+-..+|+... +....++.+.+.|+. +||..+...+..+
T Consensus 131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi-~lg~~sl~~v~~ypl------~kr~TY~pq~vLg 203 (353)
T KOG1381|consen 131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSI-ALGASSLALVITYPL------MKRFTYWPQLVLG 203 (353)
T ss_pred hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHH-HhcccccccEEEeeh------hhhcchhHHHHHh
Confidence 987 3458999999999999999999999999999999997555 334556677788985 8998888877776
Q ss_pred HhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367 250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326 (327)
Q Consensus 250 ~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l 326 (327)
+....-..+||-+ +-|. ..+...+-+++--..|++..+.++..+|.++|.+.|+|+.+.++|++.-.|+
T Consensus 204 ltfnwGAllGw~A-----~~g~---~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl 272 (353)
T KOG1381|consen 204 LTFNWGALLGWCA-----LKGS---LSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWL 272 (353)
T ss_pred hhcchhhhhcchh-----hcCc---cChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHH
Confidence 5443323455442 3343 2232223333334568889999999999999999999999999999876553
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.26 E-value=3.3e-12 Score=119.83 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=139.1
Q ss_pred hhHhhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC
Q 020367 97 FLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (327)
Q Consensus 97 ~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk 176 (327)
.-+..+.-++.|+++.+|.-....++....|+++|-..+ +++ .++...++..++.++.|.+||+++.+.|+.++
T Consensus 86 ly~lp~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~ 159 (409)
T KOG1380|consen 86 LYTLPGKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMK 159 (409)
T ss_pred hcCCCcchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhH
Confidence 344445678899999999998888888888998887653 222 35667789999999999999999999999866
Q ss_pred C--CCCccccccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHH
Q 020367 177 P--YLPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (327)
Q Consensus 177 ~--~RPlasG~ls~~~a~~~~~~~~~l~l~la~~-lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g 253 (327)
| .||+++|++++.+++.++.+....|+.+.++ .|+....+...-.++.+..|+ .+||..++..-+.+++.+
T Consensus 160 RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihiinTWvGavVGA 233 (409)
T KOG1380|consen 160 RTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHIINTWVGAVVGA 233 (409)
T ss_pred hhcccccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhhhhhHHHHHhcc
Confidence 4 8999999999999999999998888876544 665333222222345577888 489987543333333334
Q ss_pred HHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHcCCccccee
Q 020367 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV--VIAFIKDLHDVDGDKKFGIKTLSVM 317 (327)
Q Consensus 254 ~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~--~~~~~~di~DiegD~~~G~~Tlpv~ 317 (327)
+++.+||-.. .|. .++..+++...+..|.+ ...+..+++ ++..++|.+.+++.
T Consensus 234 IPPLMGwAAa-----sg~----l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~ 288 (409)
T KOG1380|consen 234 IPPLMGWAAA-----SGL----LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVT 288 (409)
T ss_pred CCccchhhhh-----ccC----CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEee
Confidence 6778887642 232 23344555556667763 345555553 34578999988764
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.05 E-value=2.3e-11 Score=109.54 Aligned_cols=206 Identities=14% Similarity=0.155 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHhcccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccc--chhccCCC
Q 020367 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQT--LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKVNKP 177 (327)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~--~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~--e~Dr~nk~ 177 (327)
..+.+.|+-.+||+..-.++.+...|..+|... ..|+.. ....+..++.+..+.++|.+|.|+|. .+|+....
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l---~~~fl~a~avlavh~agnlvntyfdf~kgid~kkad 134 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRL---ATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKAD 134 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhH---HHHHHHHhhheeeecccchhhhhhhhhhcccccccc
Confidence 467889999999999999988999999998642 234332 22344556667789999999999996 57887777
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHH---HHhhHH---HHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHh
Q 020367 178 YLPLASGEISMGTGIAITLASALMSLAYA---VMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251 (327)
Q Consensus 178 ~RPlasG~ls~~~a~~~~~~~~~l~l~la---~~lg~~---~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~ 251 (327)
+|.++...+.+.+...++..+..+|..-+ +.+++. -+.+..+.++--.+.|+.+ +.+|+..+ +.+.+.+.
T Consensus 135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyial-gdliili~ 210 (359)
T KOG4581|consen 135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIAL-GDLIILIL 210 (359)
T ss_pred chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEec-cCEEEEEe
Confidence 89999999999998888887776555433 233331 1222223444456789964 46888874 66555555
Q ss_pred HHHH-HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccc
Q 020367 252 NGLL-TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323 (327)
Q Consensus 252 ~g~~-~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a 323 (327)
.|.+ +.+.+.. |+ |.. .|.+ +--.+++.+-+-++...|+-+|.|.||++|+-|+++.+|+..+
T Consensus 211 fgpiavlfaf~~--q~---g~l--~~~~--l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s 274 (359)
T KOG4581|consen 211 FGPIAVLFAFAI--QT---GHL--AIFP--LGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTAS 274 (359)
T ss_pred echHHHHHHHHH--hc---Cce--eEEe--ehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHH
Confidence 5643 2222221 21 221 1211 1112334455566788999999999999999999999998754
No 54
>PRK13591 ubiA prenyltransferase; Provisional
Probab=93.74 E-value=0.25 Score=47.45 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=36.0
Q ss_pred HhhhccccchhccCC-CCCCccccccChHHHHHHHHHHHH---HHHHHHHHhhHH-----HHHHHHHHHHHHhhhccC
Q 020367 162 AINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASAL---MSLAYAVMIRSP-----PFIWAVIAWIFVGTAYSV 230 (327)
Q Consensus 162 ~~Nd~~D~e~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~---l~l~la~~lg~~-----~~~~~ll~~~~l~~~YS~ 230 (327)
.+||+.|.|.|+.++ +.-|..=|+ +.+..+...+.+ +.++++...|.. ..+..++.+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 789999999999865 345654443 333333222222 222223333321 122345566777788996
No 55
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=91.65 E-value=0.62 Score=44.58 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHH
Q 020367 148 EALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI 194 (327)
Q Consensus 148 la~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~ 194 (327)
+..+...+..+.++..|++.|+|+|+.|+++.+.. ++..+.+..+
T Consensus 180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l 224 (303)
T COG1575 180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL 224 (303)
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence 33455566777888999999999999988765432 3444444443
No 56
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=91.14 E-value=1.2 Score=43.00 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhhccccchhccCCC-CCCccccccChHHHHHHHHHHHH
Q 020367 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASAL 200 (327)
Q Consensus 149 a~la~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a~~~~~~~~~ 200 (327)
..+...+........||+-|+|.||.+.+ .-|. ++.++.+..+...+.+
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~ 243 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFY 243 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHH
Confidence 44566677788899999999999998654 3333 3445555554444333
No 57
>PLN00012 chlorophyll synthetase; Provisional
Probab=90.88 E-value=1.4 Score=43.47 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367 152 PAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (327)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (327)
..++...+....||+-|+|.|+. +++.-|..-|.
T Consensus 260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 34456777889999999999997 46677776664
No 58
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=90.31 E-value=1.7 Score=40.70 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (327)
..++.......+||.-|+|.||.+ .+.-|..-|+
T Consensus 169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 334455666788999999999985 4556665554
No 59
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=89.55 E-value=1.9 Score=41.36 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhhccccchhccCCC-CCCccccccChHHHHHHHHH
Q 020367 152 PAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLA 197 (327)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a~~~~~~ 197 (327)
...+....+...||+-|+|+||.+.+ .-|. ++.++.+..+...
T Consensus 182 ~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~ 225 (304)
T PRK07419 182 ILGLATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPW 225 (304)
T ss_pred HHHHHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHH
Confidence 33456677888999999999998654 3333 3445555444333
No 60
>PLN02922 prenyltransferase
Probab=89.32 E-value=2 Score=41.44 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhhhccccchhccCCCC-CCccccccChHHHHHHHHHH
Q 020367 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPY-LPLASGEISMGTGIAITLAS 198 (327)
Q Consensus 149 a~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~-RPlasG~ls~~~a~~~~~~~ 198 (327)
..+...+....+...||+-|+|+||.++++ -|. ++.++.+..+...+
T Consensus 193 ~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l 240 (315)
T PLN02922 193 ASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRWA 240 (315)
T ss_pred HHHHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHHH
Confidence 334445667788899999999999997653 333 34455555443333
No 61
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=89.10 E-value=1.9 Score=41.37 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367 154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (327)
.+...+....||+.|.|.||.. ++.-|..-|+
T Consensus 199 ~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 199 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 3455666899999999999974 5666765554
No 62
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=88.86 E-value=4.6 Score=38.13 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367 150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (327)
+++.++....-..+|++.|+|.|+. +.|.-|..-|.
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 4455666667778999999999997 45677776664
No 63
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=88.08 E-value=2.7 Score=40.18 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhccccchhccC-CCCCCcccc
Q 020367 153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASG 184 (327)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG 184 (327)
.++...+....||+.|+|.|+.+ ++.-|..-|
T Consensus 192 ~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG 224 (306)
T TIGR02056 192 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG 224 (306)
T ss_pred HHHHHHHHHHHHHccChHHHHHcCCcCcchhcC
Confidence 34566777899999999999975 455555444
No 64
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=87.79 E-value=2.1 Score=41.56 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (327)
..++...+...+||+.|+|.|+.. ++.-|+.=|+
T Consensus 188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~ 222 (331)
T PRK12392 188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence 345566777789999999999975 4455654443
No 65
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=85.99 E-value=3.1 Score=39.59 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367 150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (327)
+++.++-+..-..+|++.|+|.|+. ..|.-|..-|.
T Consensus 168 ~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 168 GLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 3444444555557888999999986 55777776665
No 66
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=85.98 E-value=10 Score=36.02 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhccccchhccC-CCCCCccccccChHHHHHHHHHHHHHHHHHHHHhh
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg 210 (327)
++..+...+...+|++-|+|.|+.. ++.-|. ++..+.+..+..++.+++..+-+..+
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677899999999999974 444443 34455666555555555544433444
No 67
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=85.74 E-value=5.5 Score=37.81 Aligned_cols=57 Identities=9% Similarity=0.095 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhccccchhccCC-CCCCccccccChHHHHHHHHHHHHHHHHHHHHhh
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg 210 (327)
+++.+...+..++||+-|.|.||.+. +.-|. ++.++.+..++..+.+++.+.....+
T Consensus 167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567778999999999999754 33332 55677777777777766665544444
No 68
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=85.73 E-value=4.1 Score=38.29 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367 154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (327)
.+...+....||+-|.|.||.+ ++.-|..-|+
T Consensus 171 ~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 171 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 3445567899999999999985 4455654444
No 69
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=85.65 E-value=5.9 Score=37.25 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhccccchhcc-CCCCCCcccc
Q 020367 150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASG 184 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG 184 (327)
++..++.+..-..+||..|+|.|+. +.|.-|..-|
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 3444555666778999999999986 4566676666
No 70
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=85.64 E-value=4.4 Score=37.94 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (327)
..++........||+.|+|.|+.+ .+.-|..-|+
T Consensus 163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 344555667889999999999975 4556655444
No 71
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=85.62 E-value=4.6 Score=38.32 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhccccchhccCCC-CCCccccccChHHHHHHHHHHHH
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASAL 200 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a~~~~~~~~~ 200 (327)
+...+........||+-|+|+|+.+.+ .-|. ++.++.+..+...+..
T Consensus 168 l~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~ 215 (285)
T TIGR02235 168 ILVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVIS 215 (285)
T ss_pred HHHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHH
Confidence 344466778889999999999998654 3333 4445555554444433
No 72
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=85.12 E-value=5 Score=37.87 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhccccchhccCC-CCCCccccccChHHHHHHHHHHHH
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASAL 200 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~ 200 (327)
+...+........||+-|+|.||.++ +.-|. ++..+.+..+...+..
T Consensus 175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~~ 222 (293)
T PRK06080 175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALLA 222 (293)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHHH
Confidence 34455667777999999999999864 33343 3344444444444333
No 73
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=85.07 E-value=11 Score=37.70 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhccccch
Q 020367 151 VPAVLMHIYVVAINQLSDVEV 171 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~ 171 (327)
-+..++..--..+|++++.+.
T Consensus 112 ta~~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 112 TLLILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 334556666789999998754
No 74
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=85.04 E-value=5.9 Score=38.00 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhccccchhccCC-CCCCc
Q 020367 152 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPL 181 (327)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPl 181 (327)
..++...+...+||+-|+|.||.++ +.-|.
T Consensus 190 ~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav 220 (308)
T PRK12887 190 FVLVFTFAIAIFKDIPDMEGDRQYQITTFTL 220 (308)
T ss_pred HHHHHHHHHHHHHhccchhhHHHcCCcchhH
Confidence 4445666777899999999999864 34443
No 75
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.82 E-value=4.7 Score=38.06 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (327)
++..++....-...|++.|+|.|+.+ .+.-|..-|.
T Consensus 171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 34455566666688999999999975 4566665554
No 76
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=83.76 E-value=7.8 Score=36.29 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhccccchhccCC-CCCCccccc
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE 185 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ 185 (327)
+..++...+-..+||+-|.|.|+.++ |.-|..-|+
T Consensus 164 ~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~ 199 (276)
T PRK12882 164 ALAALATLAREIIKDVEDIEGDRAEGARTLPILIGV 199 (276)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence 33345556678999999999999754 556654444
No 77
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=83.23 E-value=5.8 Score=37.43 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhccC-CCCCCcccccc
Q 020367 148 EALVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEI 186 (327)
Q Consensus 148 la~la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~l 186 (327)
+.++..++-...-...|.+.|+|.|+.. .|.-|..-|.-
T Consensus 166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~ 205 (282)
T PRK12848 166 LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRY 205 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccc
Confidence 3345556666666788999999999974 46667666653
No 78
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=83.14 E-value=13 Score=35.50 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhccccchhccC-CCCCCcccccc
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEI 186 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~l 186 (327)
+..++.+..-...||+.|+|.|+.+ .+.-|+.-|+-
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence 4455567777899999999999974 56777766653
No 79
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=82.15 E-value=7.1 Score=37.00 Aligned_cols=36 Identities=22% Similarity=0.033 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (327)
.+...+....-..+|++-|+|.|+.. .+.-|..-|.
T Consensus 165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 34555666677899999999999974 4566665554
No 80
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=81.58 E-value=7.4 Score=36.94 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhccccchhccCCC-CCCccccccChHHHHHHHHHHH
Q 020367 153 AVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA 199 (327)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a~~~~~~~~ 199 (327)
..+........|+.-|+|.|+.+.+ .-|. ++.++.+..+...+.
T Consensus 173 ~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l~ 217 (284)
T TIGR00751 173 TGLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGLL 217 (284)
T ss_pred HHHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHHH
Confidence 3455677788999999999998654 3332 444555554443333
No 81
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=81.01 E-value=6.5 Score=36.82 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367 155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 155 l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (327)
+...+....||.-|+|.|+.. .+.-|..-|.
T Consensus 165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 344566688999999999974 5666766554
No 82
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=80.15 E-value=7.7 Score=36.41 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367 152 PAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (327)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (327)
..++.+.+-...||+-|+|.|+. +.|.-|..-|.
T Consensus 162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~ 196 (279)
T PRK09573 162 CAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence 34455566677899999999997 45666765553
No 83
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=79.15 E-value=7.1 Score=37.12 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (327)
+..++-+.+-..+|++-|.|.|+. +.|.-|..-|.
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 444566667778999999999986 45677766665
No 84
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=77.78 E-value=56 Score=30.73 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=43.4
Q ss_pred hHhhHHHHHHHHHHHchhhhHHHHHH----HHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhc
Q 020367 98 LNVFLKKFHALYRFMRAYACAGVIIA----TTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDK 173 (327)
Q Consensus 98 ~~~~~~~l~~~~~l~Rp~~~~~~~l~----~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr 173 (327)
.......++.++|..||..+.....+ ...+. -....... . +...+.++.+...........+.=.|+...|
T Consensus 6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~-~~~~~~~~--~--~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r 80 (289)
T COG0382 6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAA-SGLPSLKL--L--LLAFLAFFLARSAGYVINDLADREIDRINPR 80 (289)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-cCCchHHH--H--HHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence 34455688899999999987766433 33322 22221222 1 1123444555566666666777779988777
Q ss_pred -cCCC
Q 020367 174 -VNKP 177 (327)
Q Consensus 174 -~nk~ 177 (327)
.++|
T Consensus 81 t~~RP 85 (289)
T COG0382 81 TKNRP 85 (289)
T ss_pred ccCCC
Confidence 3655
No 85
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=77.76 E-value=8.5 Score=36.85 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhccccchhccC-CCCCCcccc
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASG 184 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG 184 (327)
++.++...+-.++|+.-|+|.|+.. -+.-|..=|
T Consensus 184 ~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 184 IGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 3445556666789999999999864 456666555
No 86
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=74.81 E-value=36 Score=32.70 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (327)
+..++....-..++++.|+|.|+. ..|.-|..-|.
T Consensus 199 ~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 199 AGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 344555555666789999999987 55677776665
No 87
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=73.55 E-value=18 Score=34.41 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhccccchhccCCC-CCCccccccChHHH
Q 020367 154 VLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTG 191 (327)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a 191 (327)
.+........|++-|+|.||.+.+ .-|. ++.++.+
T Consensus 181 ~l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 181 GLLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 344567789999999999998654 3332 4445555
No 88
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=71.32 E-value=21 Score=33.88 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhccccchhccCC-CCCCcccccc
Q 020367 150 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEI 186 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~l 186 (327)
++..++...+-..+|++.|+|.|+..+ +.-|..-|+-
T Consensus 172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~ 209 (290)
T PRK12870 172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRY 209 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccc
Confidence 345566677777899999999999743 5556555544
No 89
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=70.50 E-value=73 Score=30.36 Aligned_cols=41 Identities=22% Similarity=0.112 Sum_probs=23.9
Q ss_pred HHHHhhhccCCCCcc-ccccc-cchhhHHHHHhHHH-HHHhHHHH
Q 020367 221 WIFVGTAYSVQLPLL-RWKGN-SFLAAFCMVSLNGL-LTQFPVYV 262 (327)
Q Consensus 221 ~~~l~~~YS~~lpp~-rlKr~-~~l~~l~~~~~~g~-~~~lg~~~ 262 (327)
++.+.+.|.. +|.. +.|.+ ...|.+..++.|-+ -..+++|.
T Consensus 201 ~~~f~~ly~~-lP~~~~~~~~~~~~Ga~~aai~~~i~~~~f~~Yv 244 (303)
T COG1295 201 TLGFFLLYRF-LPNVRVLKWRDVLPGALLAAILFELGKYLFGYYL 244 (303)
T ss_pred HHHHHHHHHH-cCCccccchHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566778887 7876 44444 55666666665532 23455554
No 90
>PRK13592 ubiA prenyltransferase; Provisional
Probab=70.15 E-value=13 Score=35.67 Aligned_cols=23 Identities=17% Similarity=0.530 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHc
Q 020367 287 ISCFCVVIAFIKDLHDVDGDKKF 309 (327)
Q Consensus 287 ~~~~~~~~~~~~di~DiegD~~~ 309 (327)
.++...+-..+||+.|+|-|+.+
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN 77 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRL 77 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhc
Confidence 34445667899999999999765
No 91
>PRK01637 hypothetical protein; Reviewed
Probab=67.99 E-value=95 Score=29.18 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhccccchhc
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDK 173 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr 173 (327)
.+...+..-...+|+.++.+++|
T Consensus 104 sa~~~~~~l~~a~N~i~~~~~~R 126 (286)
T PRK01637 104 VALMLISSIDKALNTIWRSKRKR 126 (286)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC
Confidence 34455666778899999876543
No 92
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=66.68 E-value=19 Score=32.43 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhccccchhccCC
Q 020367 154 VLMHIYVVAINQLSDVEVDKVNK 176 (327)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~nk 176 (327)
.+........||+-|.|.|+...
T Consensus 156 ~~~~~~~~~~~~~~D~~~D~~~g 178 (257)
T PF01040_consen 156 FLLIFAIMFFNDIRDIEGDRKAG 178 (257)
T ss_pred HHHHHHHHHHHHhhhHHHHHHcC
Confidence 45666677888999999997643
No 93
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=63.15 E-value=1.2e+02 Score=29.08 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHhhhccccchhccCC-CCCCccccc
Q 020367 159 YVVAINQLSDVEVDKVNK-PYLPLASGE 185 (327)
Q Consensus 159 a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ 185 (327)
+-.++.+.-|.|.||..+ +.-|..-|.
T Consensus 187 g~DiiYa~qD~e~D~~~Gl~Slpv~fG~ 214 (300)
T PRK12876 187 ANDIIYAIQDLEFDRKEGLFSIPARFGE 214 (300)
T ss_pred HHHHHHHHcCHhhHHHcCCccchHHHCc
Confidence 334566789999999754 455554443
No 94
>PLN02878 homogentisate phytyltransferase
Probab=61.92 E-value=51 Score=31.34 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhccccchhccCC-CCCCccccccChHHHHHHHHHHHH
Q 020367 154 VLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASAL 200 (327)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~ 200 (327)
++......++||+-|.|-||..+ +.-|+. +..+.+..++..++.
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~---lG~~~~~~i~~~ll~ 210 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVR---LGQKRVFWLCVNLLE 210 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceechh---hChHHHHHHHHHHHH
Confidence 44455667999999999999854 444543 334444444444433
No 95
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=58.76 E-value=33 Score=32.22 Aligned_cols=30 Identities=23% Similarity=0.094 Sum_probs=18.0
Q ss_pred HHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367 156 MHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (327)
Q Consensus 156 ~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (327)
........|++.|.|.|+. +.|.-|..-|.
T Consensus 171 w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~ 201 (279)
T PRK12869 171 WTPGHIWSLALKYREDYRRAGVPMLPAVVGE 201 (279)
T ss_pred HHHHHHHHHHHHhHHhHHHcCCeecceeecH
Confidence 3333344467789999875 44555665553
No 96
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=58.02 E-value=87 Score=24.33 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC
Q 020367 138 LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN 175 (327)
Q Consensus 138 ~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n 175 (327)
.+...+.++.+.+++..+...++...|..+|...|++.
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 55666777778888888899999999999999887764
No 97
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=48.03 E-value=18 Score=34.54 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChHHHHHc
Q 020367 289 CFCVVIAFIKDLHDVDGDKKF 309 (327)
Q Consensus 289 ~~~~~~~~~~di~DiegD~~~ 309 (327)
+...+...+||+-|+|.|++.
T Consensus 57 l~~sa~y~iND~~D~e~Dr~~ 77 (295)
T PRK12324 57 LASSAVYLVNDIRDVEADRLH 77 (295)
T ss_pred HHHHHHHHHHhHHHHHhhccC
Confidence 334567899999999999985
No 98
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=46.36 E-value=1.2e+02 Score=28.73 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhccccchhccCC-CCCCcccc
Q 020367 150 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG 184 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG 184 (327)
+++.++-..+-.++.++-|+|.|+..+ +.-|.-=|
T Consensus 165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 445555556667999999999999754 34444333
No 99
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=46.03 E-value=1.2e+02 Score=27.90 Aligned_cols=57 Identities=9% Similarity=-0.000 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHHHHH
Q 020367 148 EALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAV 207 (327)
Q Consensus 148 la~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~ 207 (327)
....+.=+++.+.-+..|+.|-+.=| |.+|-.........++..+-.++..++-...
T Consensus 37 ~~a~avEliH~asLIhDDI~D~s~~R---RG~pt~~~~~G~~~Ail~gd~ll~~a~~~l~ 93 (260)
T PF00348_consen 37 PLAAAVELIHAASLIHDDIIDNSDLR---RGKPTVHKKFGNAIAILAGDYLLALAFELLA 93 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEE---TTEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccC---CCCccccccccccchhhhchHHHHHHHHHHH
Confidence 33456678999999999996654323 3344333344555665555555555554433
No 100
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=45.07 E-value=2.7e+02 Score=26.60 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhccccchhccCC-CCCCccccc
Q 020367 153 AVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE 185 (327)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ 185 (327)
.++-+..-..+=.+.|+|.|+..+ +.-|..-|.
T Consensus 179 ~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 179 TLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 333333333455566999998754 667776675
No 101
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=42.97 E-value=1.1e+02 Score=28.62 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=13.4
Q ss_pred hccccchhccC-CCCCCccccc
Q 020367 165 QLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 165 d~~D~e~Dr~n-k~~RPlasG~ 185 (327)
.+.|+|.||.. .|.-|..-|.
T Consensus 179 a~~~~~dd~~~G~~tl~v~~G~ 200 (280)
T TIGR01473 179 ALKYKDDYRAAGIPMLPVVKGE 200 (280)
T ss_pred HHHhhhhHHHCCCccCCcccCH
Confidence 45788999764 4555655554
No 102
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=42.61 E-value=1.1e+02 Score=25.32 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=24.7
Q ss_pred hhccCCCCCCccccccChHHHHHHHHHHHHH----HHHHHHHhhHH
Q 020367 171 VDKVNKPYLPLASGEISMGTGIAITLASALM----SLAYAVMIRSP 212 (327)
Q Consensus 171 ~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l----~l~la~~lg~~ 212 (327)
-||.|+ .|.+=+.++..|....+.+..++ |+.+++..+++
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467775 46666777888877765555444 44445555654
No 103
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=42.03 E-value=2.6e+02 Score=26.43 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367 153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (327)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (327)
.++-+..-...|.+.|+|.|+.. -|.-|..-|.
T Consensus 176 ~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~ 209 (296)
T PRK04375 176 IFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGI 209 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCH
Confidence 33334444455668899999653 3556665553
No 104
>PRK11383 hypothetical protein; Provisional
Probab=41.68 E-value=2.3e+02 Score=24.31 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=37.3
Q ss_pred HHHHHHHhhhccCCCCccccc--cccchhhHHHHHhHH-HHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHH
Q 020367 218 VIAWIFVGTAYSVQLPLLRWK--GNSFLAAFCMVSLNG-LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVI 294 (327)
Q Consensus 218 ll~~~~l~~~YS~~lpp~rlK--r~~~l~~l~~~~~~g-~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~ 294 (327)
++.+++..+.|-. -.|-+ ..+. ..++.+..|. .+..++.+..+ +.+.+. .++.-.....+++.-+...+
T Consensus 48 l~lglF~avs~QK---~vRD~~egi~v-t~~f~~~cw~a~l~~i~LL~iG---LwNA~l-~lsEKGfY~~af~lsLFgai 119 (145)
T PRK11383 48 LVLGLFSAASYQK---TVRDKYEGIPT-TSIYYMTCLTVFIISVALLMVG---LWNATL-LLSEKGFYGLAFFLSLFGAV 119 (145)
T ss_pred HHHHHHHHHHHHH---HHhhcccCCCh-hHHHHHHHHHHHHHHHHHHHHH---HhcCCc-chhhhhHHHHHHHHHHHHHH
Confidence 3445555555552 23444 4453 3455555553 33334433322 222211 22222333333322223457
Q ss_pred HHHHhcCChHHH
Q 020367 295 AFIKDLHDVDGD 306 (327)
Q Consensus 295 ~~~~di~DiegD 306 (327)
.+-|++||...+
T Consensus 120 ~vQKn~RD~~~~ 131 (145)
T PRK11383 120 AVQKNIRDAGIN 131 (145)
T ss_pred HHHhhhhhhhhc
Confidence 788999998554
No 105
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.28 E-value=2e+02 Score=26.26 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=22.8
Q ss_pred cccccccchhhHHHHHhHHHHHHhHHHHh
Q 020367 235 LRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (327)
Q Consensus 235 ~rlKr~~~l~~l~~~~~~g~~~~lg~~~~ 263 (327)
.|-||+..+..+.++.+|+++..+|+..-
T Consensus 98 v~~RkraVl~Dl~~SalwtflwfvGFc~l 126 (233)
T KOG4016|consen 98 VKDRKRAVLADLGVSALWAFLWFVGFCFL 126 (233)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888889998888887654
No 106
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=40.83 E-value=1.2e+02 Score=31.17 Aligned_cols=55 Identities=7% Similarity=0.087 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhcc-CCCCCCccccccChHHHHHHHHHHHHHHHHHHHH
Q 020367 146 LMEALVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGEISMGTGIAITLASALMSLAYAVM 208 (327)
Q Consensus 146 ~lla~la~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~ 208 (327)
..++..+.+++..++-.-+|+++.-.|+- ++++| .+.+.+...+..+++..++..
T Consensus 355 taLstaaGL~l~iasavsHDiY~~vik~~ase~~~--------v~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 355 TALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKE--------VRVARIAVVILGVVAILLGIL 410 (529)
T ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccce--------ehhHHHHHHHHHHHHHHheec
Confidence 34556677888888889999999877654 33332 344455566666666665543
No 107
>PRK13595 ubiA prenyltransferase; Provisional
Probab=40.35 E-value=1.4e+02 Score=28.65 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhccccchhccCC-CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhH
Q 020367 155 LMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASALMSLAYAVMIRS 211 (327)
Q Consensus 155 l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~ 211 (327)
+-..+..++=++-|.|.||... +.-|. ++..+.+..++..+.+++..+-+.+++
T Consensus 180 ~w~~g~dii~ai~DiegDr~~Gi~Slpv---~lG~r~a~~~a~~~~~~a~~~~~~~~~ 234 (292)
T PRK13595 180 AWSVGKHAFDAAQDIPADRAAGTRTVAT---TLGVRGTALYALAWFLLAGALLWPVSR 234 (292)
T ss_pred HHHHHHHHHHhccChHhHHHcCCeechH---HhCcHhHHHHHHHHHHHHHHHHHHhcc
Confidence 3335666777888899999754 33332 345666677777777776666656553
No 108
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=38.67 E-value=3.1e+02 Score=26.21 Aligned_cols=51 Identities=14% Similarity=-0.006 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHH
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLA 204 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~ 204 (327)
.+.=+++.++-+..|+.|-+.-|. .+|-+........++..+=.++..++-
T Consensus 70 ~aiEliH~asLiHDDI~D~s~~RR---g~pt~~~~~G~~~Ail~GD~L~~~a~~ 120 (319)
T TIGR02748 70 VALELIHMASLVHDDVIDDADLRR---GRPTIKSKWGNRIAMYTGDYLFAKSLE 120 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCCCC---CCcCHHHHhChHHHHHHHHHHHHHHHH
Confidence 345678999999999977654343 455555555566666655555554443
No 109
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=38.13 E-value=3.5e+02 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=16.4
Q ss_pred HhhhccccchhccCC-CCCCcccccc
Q 020367 162 AINQLSDVEVDKVNK-PYLPLASGEI 186 (327)
Q Consensus 162 ~~Nd~~D~e~Dr~nk-~~RPlasG~l 186 (327)
.+-...|+|.|+..+ +.-|..-|.-
T Consensus 184 ~~ya~~D~e~D~~~Gi~sl~v~~G~~ 209 (289)
T PLN02809 184 TIYAHQDKEDDLKVGVKSTALRFGDD 209 (289)
T ss_pred HHHHHhchhhHHhCCCcccchhhcHH
Confidence 444556999999754 5666655553
No 110
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=35.98 E-value=3e+02 Score=24.06 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=42.2
Q ss_pred HHHHHHHhhhccccchhccCCC-CCCccccccChHHHH----HHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHh
Q 020367 156 MHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGI----AITLASALMSLAYAVMIRS-----PPFIWAVIAWIFVG 225 (327)
Q Consensus 156 ~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a~----~~~~~~~~l~l~la~~lg~-----~~~~~~ll~~~~l~ 225 (327)
...+.+..++..+...++.+|| .+| +..++ .+..++.+++..+.|.-+. +..+...++-.++.
T Consensus 19 ~a~gs~~~~~~~~~wy~~L~kP~w~p-------p~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln 91 (161)
T COG3476 19 VALGSFFISSRDPNWYNNLKKPFWLP-------PEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLLQLILN 91 (161)
T ss_pred HHHHHHHhccccHHHHHhccCCCCCC-------hHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH
Confidence 3344445555555556666666 333 33333 2344455556666665432 22222334456678
Q ss_pred hhccCCCCccccc-cccchhhHHHHHhH
Q 020367 226 TAYSVQLPLLRWK-GNSFLAAFCMVSLN 252 (327)
Q Consensus 226 ~~YS~~lpp~rlK-r~~~l~~l~~~~~~ 252 (327)
.+||. +-+| |++..+.+.+...+
T Consensus 92 ~awsp----iff~l~~l~~a~i~~lll~ 115 (161)
T COG3476 92 FAWSP----IFFGLRSLGAALIIILLLW 115 (161)
T ss_pred HHHHH----HHHhhcCcchHHHHHHHHH
Confidence 88883 2233 44445555544433
No 111
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.91 E-value=2.1e+02 Score=23.44 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=23.3
Q ss_pred hhccCCCCCCccccccChHHHHHHHHHHHHHHHHHH
Q 020367 171 VDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206 (327)
Q Consensus 171 ~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la 206 (327)
-||.|+ -|.+-+.++..|....+.+..++++.++
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g 38 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLG 38 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHH
Confidence 477775 4666677888888887766666555544
No 112
>PF14256 YwiC: YwiC-like protein
Probab=29.06 E-value=3.4e+02 Score=22.56 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHH
Q 020367 117 CAGVIIATTSNS 128 (327)
Q Consensus 117 ~~~~~l~~~~g~ 128 (327)
|...+.+++.|.
T Consensus 8 W~Ml~~P~l~G~ 19 (129)
T PF14256_consen 8 WAMLLVPFLLGM 19 (129)
T ss_pred HHHHHHHHHHHH
Confidence 666777888876
No 113
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=26.73 E-value=3.8e+02 Score=22.35 Aligned_cols=7 Identities=0% Similarity=0.083 Sum_probs=3.2
Q ss_pred HHHHhhH
Q 020367 205 YAVMIRS 211 (327)
Q Consensus 205 la~~lg~ 211 (327)
++...++
T Consensus 54 ~~ll~~P 60 (153)
T PF03208_consen 54 IFLLTNP 60 (153)
T ss_pred HHHHHHH
Confidence 3444454
No 114
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=26.12 E-value=84 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=17.4
Q ss_pred HHHHhcCChHHHHHcCCcccceeec
Q 020367 295 AFIKDLHDVDGDKKFGIKTLSVMLG 319 (327)
Q Consensus 295 ~~~~di~DiegD~~~G~~Tlpv~lG 319 (327)
+-+-+-|++..+.|.|++.+-..-|
T Consensus 116 ~~iL~~p~V~~~~K~~i~~i~~~Kg 140 (155)
T PF10777_consen 116 DKILQSPQVPDEIKQGIQRIISTKG 140 (155)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 3344679999999988877654433
No 115
>PRK08238 hypothetical protein; Validated
Probab=26.00 E-value=61 Score=33.18 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHcC
Q 020367 288 SCFCVVIAFIKDLHDVDGDKKFG 310 (327)
Q Consensus 288 ~~~~~~~~~~~di~DiegD~~~G 310 (327)
++...+...+||+-|+|.|++.-
T Consensus 236 ~l~~sa~~~~ND~~D~e~Dr~~~ 258 (479)
T PRK08238 236 SLCASAVYILNDLLDLEADRAHP 258 (479)
T ss_pred HHHHHHHHHHHhhHHhhhhccCC
Confidence 34446678999999999999973
No 116
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=25.42 E-value=4.2e+02 Score=22.49 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=20.5
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHhhhccC
Q 020367 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWA--VIAWIFVGTAYSV 230 (327)
Q Consensus 184 G~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~--ll~~~~l~~~YS~ 230 (327)
|-.|+..-+-+.+...+.-+.++...++|.+++. +++..+.++.|-+
T Consensus 82 GfFsP~SwWPl~la~~~al~~lGla~g~Wl~~iG~~~~i~~~~G~vfEy 130 (137)
T PF12270_consen 82 GFFSPHSWWPLVLAAAAALVFLGLAFGWWLILIGAVLLIVAVVGWVFEY 130 (137)
T ss_pred CcCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 4566666554433333322223333343333322 2334455666654
No 117
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.63 E-value=71 Score=23.81 Aligned_cols=29 Identities=7% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhccC
Q 020367 147 MEALVPAVLMHIYVVAINQLSDVEVDKVN 175 (327)
Q Consensus 147 lla~la~~l~~~a~~~~Nd~~D~e~Dr~n 175 (327)
.+++++.+++...++..|=|+.+.+||.+
T Consensus 35 aIGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 34567778888889999999999999854
No 118
>PLN02776 prenyltransferase
Probab=23.92 E-value=4.1e+02 Score=26.01 Aligned_cols=39 Identities=13% Similarity=-0.044 Sum_probs=19.2
Q ss_pred cccchhcc-CCCCCCcccc--ccChHHHHHHHHHHHHHHHHH
Q 020367 167 SDVEVDKV-NKPYLPLASG--EISMGTGIAITLASALMSLAY 205 (327)
Q Consensus 167 ~D~e~Dr~-nk~~RPlasG--~ls~~~a~~~~~~~~~l~l~l 205 (327)
.|+|.|+. .-|.-|++.+ +-...+.......+..++++.
T Consensus 174 ~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~ 215 (341)
T PLN02776 174 MCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLA 215 (341)
T ss_pred HhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333 4466677664 334444444455555555543
No 119
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=23.89 E-value=2.4e+02 Score=24.01 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=12.1
Q ss_pred CCccccccChHHHH
Q 020367 179 LPLASGEISMGTGI 192 (327)
Q Consensus 179 RPlasG~ls~~~a~ 192 (327)
-|+++|+++.++..
T Consensus 59 vPiAtGki~~~~l~ 72 (140)
T PF04284_consen 59 VPIATGKIGFKDLL 72 (140)
T ss_pred ccccCCCcCHHHHH
Confidence 59999999988874
No 120
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.93 E-value=3e+02 Score=20.70 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 020367 193 AITLASALMSLAYAVMIRS 211 (327)
Q Consensus 193 ~~~~~~~~l~l~la~~lg~ 211 (327)
.+..+..++|++.++..+.
T Consensus 15 ~il~~~~iisfi~Gy~~q~ 33 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQS 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556677777777654
No 121
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=21.96 E-value=5.2e+02 Score=22.34 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 020367 147 MEALVPAVLMHIYVVAINQLS 167 (327)
Q Consensus 147 lla~la~~l~~~a~~~~Nd~~ 167 (327)
+++-++..+.-...+..++|.
T Consensus 31 ~~~Gla~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 31 ILAGLGGGVANGMSNAFGAFT 51 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666677776
No 122
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=21.76 E-value=6.2e+02 Score=23.12 Aligned_cols=20 Identities=15% Similarity=-0.071 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhccccch
Q 020367 152 PAVLMHIYVVAINQLSDVEV 171 (327)
Q Consensus 152 a~~l~~~a~~~~Nd~~D~e~ 171 (327)
+...+..--..+|+.++.+.
T Consensus 96 as~~~~~l~~aln~i~~~~~ 115 (263)
T TIGR00766 96 GLNWMGNLREAISDVWERPP 115 (263)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 33455666678999988754
No 123
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=21.43 E-value=3.5e+02 Score=21.16 Aligned_cols=31 Identities=3% Similarity=-0.123 Sum_probs=18.8
Q ss_pred hccCCCCCCccccccChHHHHHHHHHHHHHHHHHH
Q 020367 172 DKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206 (327)
Q Consensus 172 Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la 206 (327)
|++|+|.|-+ -.+..|+ ..+...+++|+.++
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~~ 37 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILSG 37 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHHh
Confidence 4566666654 5677887 55555555555554
No 124
>COG4125 Predicted membrane protein [Function unknown]
Probab=20.43 E-value=5.5e+02 Score=21.96 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhccccchhcc
Q 020367 149 ALVPAVLMHIYVVAINQLSDVEVDKV 174 (327)
Q Consensus 149 a~la~~l~~~a~~~~Nd~~D~e~Dr~ 174 (327)
+++.........+++|-.+|+-.-|.
T Consensus 46 ~i~~atvAm~WN~vyN~lFd~~~rr~ 71 (149)
T COG4125 46 TILSATVAMIWNFVYNLLFDRAERRM 71 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666778888888876554
No 125
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=20.15 E-value=2.5e+02 Score=28.12 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhcc---CCCCCCccccccC
Q 020367 146 LMEALVPAVLMHIYVVAINQLSDVEVDKV---NKPYLPLASGEIS 187 (327)
Q Consensus 146 ~lla~la~~l~~~a~~~~Nd~~D~e~Dr~---nk~~RPlasG~ls 187 (327)
.+..|.+.+-.+.....+|++.+...|+. +.-+||.+.+.-+
T Consensus 327 yv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~ 371 (452)
T PF04547_consen 327 YVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASS 371 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccc
Confidence 34444555556666678999999999986 3467898875544
Done!