Query 020367
Match_columns 327
No_of_seqs 307 out of 1455
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 15:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 30.4 13 0.00045 34.1 0.6 35 290-324 208-253 (297)
2 3lsn_A Geranyltranstransferase 26.1 12 0.00043 34.4 -0.4 35 290-324 215-260 (304)
3 3lom_A Geranyltranstransferase 25.4 13 0.00044 34.5 -0.4 34 291-324 223-267 (313)
4 3p8l_A Geranyltranstransferase 24.7 37 0.0013 31.1 2.6 35 291-325 219-264 (302)
5 3ts7_A Geranyltranstransferase 23.5 13 0.00044 34.7 -0.8 34 291-324 222-266 (324)
6 1wy0_A Geranylgeranyl pyrophos 22.5 4.4E+02 0.015 24.0 10.5 51 151-204 73-123 (342)
7 3uca_A Geranyltranstransferase 21.3 47 0.0016 30.8 2.6 34 291-324 244-288 (324)
8 3p8r_A Geranyltranstransferase 21.0 15 0.00053 33.7 -0.8 34 291-324 222-266 (302)
9 3pde_A Farnesyl-diphosphate sy 20.9 42 0.0014 30.9 2.1 34 291-324 218-262 (309)
10 3llw_A Geranyltranstransferase 20.8 18 0.00061 33.5 -0.5 35 290-324 222-265 (311)
11 2h8o_A Geranyltranstransferase 20.7 51 0.0017 30.7 2.7 52 150-204 111-164 (335)
12 4f62_A Geranyltranstransferase 20.1 18 0.00063 33.5 -0.5 36 290-325 214-260 (317)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=30.42 E-value=13 Score=34.08 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCChHH-----------HHHcCCcccceeecccccc
Q 020367 290 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVS 324 (327)
Q Consensus 290 ~~~~~~~~~di~Dieg-----------D~~~G~~Tlpv~lG~~~a~ 324 (327)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++
T Consensus 208 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~ 253 (297)
T 3m0g_A 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAK 253 (297)
T ss_dssp HHHHHHHHTTCC---------------------CCHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHH
Confidence 3456678999999865 6678999999999988775
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=26.11 E-value=12 Score=34.38 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCChHH-----------HHHcCCcccceeecccccc
Q 020367 290 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVS 324 (327)
Q Consensus 290 ~~~~~~~~~di~Dieg-----------D~~~G~~Tlpv~lG~~~a~ 324 (327)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++
T Consensus 215 lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~ 260 (304)
T 3lsn_A 215 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAK 260 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHH
Confidence 3455678888888865 6678999999999988775
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=25.38 E-value=13 Score=34.45 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCChHH-----------HHHcCCcccceeecccccc
Q 020367 291 CVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVS 324 (327)
Q Consensus 291 ~~~~~~~~di~Dieg-----------D~~~G~~Tlpv~lG~~~a~ 324 (327)
..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++
T Consensus 223 GlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~ 267 (313)
T 3lom_A 223 GLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLE 267 (313)
T ss_dssp HHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHH
T ss_pred HHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHH
Confidence 355577788887754 6788999999999988775
No 4
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=24.70 E-value=37 Score=31.11 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCChH-----------HHHHcCCcccceeeccccccc
Q 020367 291 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 291 ~~~~~~~~di~Die-----------gD~~~G~~Tlpv~lG~~~a~~ 325 (327)
..+..+..|+.|+. .|.+.|+.|+|+.+|.+.++.
T Consensus 219 GlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~ 264 (302)
T 3p8l_A 219 GLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKD 264 (302)
T ss_dssp HHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHH
Confidence 35556778887774 578889999999999887753
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=23.47 E-value=13 Score=34.67 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCChHH-----------HHHcCCcccceeecccccc
Q 020367 291 CVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVS 324 (327)
Q Consensus 291 ~~~~~~~~di~Dieg-----------D~~~G~~Tlpv~lG~~~a~ 324 (327)
..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++
T Consensus 222 GlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~ 266 (324)
T 3ts7_A 222 GLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAK 266 (324)
T ss_dssp HHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHH
Confidence 345567778877754 7788999999999988775
No 6
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=22.47 E-value=4.4e+02 Score=23.98 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHH
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLA 204 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~ 204 (327)
.+.=+++.+.-+..|+.|-+.- +|.+|-+........++..+-.++..++-
T Consensus 73 ~avEliH~asLiHDDi~D~s~~---RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 123 (342)
T 1wy0_A 73 VAIELIHNYSLVHDDIMDMDET---RRGKPTVHRIWGVNMAILAGDLLFSKAFE 123 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC---STTSCCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcccCCCC---CCCCCccccccChhHHHHHHHHHHHHHHH
Confidence 4556789999999999664332 33445444445555565555455544443
No 7
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=21.34 E-value=47 Score=30.81 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCChH-----------HHHHcCCcccceeecccccc
Q 020367 291 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVS 324 (327)
Q Consensus 291 ~~~~~~~~di~Die-----------gD~~~G~~Tlpv~lG~~~a~ 324 (327)
..+..+..|+.|+. .|.+.|+.|+|+.+|.++++
T Consensus 244 GlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~ 288 (324)
T 3uca_A 244 GLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECK 288 (324)
T ss_dssp HHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHH
Confidence 35556777887774 57788999999999988765
No 8
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=21.05 E-value=15 Score=33.69 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCChH-----------HHHHcCCcccceeecccccc
Q 020367 291 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVS 324 (327)
Q Consensus 291 ~~~~~~~~di~Die-----------gD~~~G~~Tlpv~lG~~~a~ 324 (327)
..+..+..|+.|+. .|.+.|+.|+|+.+|.+.++
T Consensus 222 G~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~ 266 (302)
T 3p8r_A 222 GLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQ 266 (302)
T ss_dssp HHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHH
Confidence 34456777777764 46788999999999988775
No 9
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=20.86 E-value=42 Score=30.89 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCChH-----------HHHHcCCcccceeecccccc
Q 020367 291 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVS 324 (327)
Q Consensus 291 ~~~~~~~~di~Die-----------gD~~~G~~Tlpv~lG~~~a~ 324 (327)
..+..+..|+.|+. .|.+.|+.|+|+.+|.+++.
T Consensus 218 GlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~ 262 (309)
T 3pde_A 218 GLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGAN 262 (309)
T ss_dssp HHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhH
Confidence 35557778888874 47788999999999988764
No 10
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=20.77 E-value=18 Score=33.47 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCChHHHH---------HcCCcccceeecccccc
Q 020367 290 FCVVIAFIKDLHDVDGDK---------KFGIKTLSVMLGKERVS 324 (327)
Q Consensus 290 ~~~~~~~~~di~DiegD~---------~~G~~Tlpv~lG~~~a~ 324 (327)
+..+..+..|+.|+.+|. +.|+.|+|+.+|.+++.
T Consensus 222 lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~ 265 (311)
T 3llw_A 222 MGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERAN 265 (311)
T ss_dssp HHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHH
Confidence 345667889999998775 57999999999988764
No 11
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=20.70 E-value=51 Score=30.66 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhc--cccchhccCCCCCCccccccChHHHHHHHHHHHHHHHH
Q 020367 150 LVPAVLMHIYVVAINQL--SDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLA 204 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~--~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~ 204 (327)
..+.=+++.+.-+..|+ .|-+.=| +.+|-.........++..+=.++..++-
T Consensus 111 A~aiEliH~asLIHDDiPamD~s~~R---RG~pt~h~~~G~~~AIlaGD~Ll~~A~~ 164 (335)
T 2h8o_A 111 GAALECLHCYSLVHDDLPAMDDDDLR---RGQPTVHRKFDEATAILAGDSLLTLAFD 164 (335)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCSEE---TTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchhccCCCcC---CCCCcHhhhcChHHHHHHHHHHHHHHHH
Confidence 34556789999999999 7765434 3344444445556665555455544443
No 12
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=20.06 E-value=18 Score=33.49 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCChHH-----------HHHcCCcccceeeccccccc
Q 020367 290 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVSK 325 (327)
Q Consensus 290 ~~~~~~~~~di~Dieg-----------D~~~G~~Tlpv~lG~~~a~~ 325 (327)
+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+.++.
T Consensus 214 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~ 260 (317)
T 4f62_A 214 IGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKA 260 (317)
T ss_dssp HHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHH
Confidence 3455677888888754 67789999999999887753
Done!