Query 020367
Match_columns 327
No_of_seqs 307 out of 1455
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 15:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020367.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020367hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 69.5 5.4 0.0004 34.1 7.4 55 150-205 67-121 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 17.9 9.2 0.00067 32.7 -0.9 56 149-205 69-124 (299)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 12.3 2.1E+02 0.015 21.9 6.4 6 160-165 111-116 (199)
4 d1xmeb2 f.17.2.1 (B:3-36) Bact 10.7 1.3E+02 0.0098 16.3 3.2 23 206-228 11-33 (34)
5 d2q80a1 a.128.1.1 (A:6-296) Ge 9.2 34 0.0025 28.6 0.2 53 150-205 45-97 (291)
6 d1fpsa_ a.128.1.1 (A:) Farnesy 7.8 24 0.0017 30.5 -1.5 33 290-322 230-272 (348)
7 d1te7a_ b.122.1.7 (A:) Hypothe 6.9 91 0.0066 22.1 1.6 16 302-317 11-26 (103)
8 d1v4ea_ a.128.1.1 (A:) Octopre 6.7 23 0.0017 29.7 -2.2 52 151-205 60-111 (280)
9 d1bhua_ b.11.1.3 (A:) Streptom 6.1 78 0.0057 21.3 0.8 19 9-27 51-69 (102)
10 d1nuba2 g.3.11.3 (A:53-77) Dom 5.9 68 0.005 16.7 0.3 10 53-62 2-11 (26)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=69.52 E-value=5.4 Score=34.07 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHHH
Q 020367 150 LVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l 205 (327)
..+.=++|.+.-+..|+.|.|.|..+ |.+|-.........++..+-.++..++-+
T Consensus 67 A~avEllH~asLIHDDI~d~D~~~~R-Rg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 67 AIALEMIHTYSLIHDDLPAMDNDDYR-RGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEE-TTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhh-hcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 34567789999999999988776542 23454444555555655555555554443
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=17.87 E-value=9.2 Score=32.68 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHHH
Q 020367 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205 (327)
Q Consensus 149 a~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l 205 (327)
+..+.=++|.+.-+..|+.|.+.|..+ |.+|-.........|+..+-.++..++-+
T Consensus 69 ~A~aiEllH~asLiHDDI~d~d~~~~R-RG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 69 PAAAVECIHAYSLIHDDLPAMDDDDLR-RGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCCEE-TTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhhhhhcc-cccccceeeeCcchhhhhcchHHHHHHHH
Confidence 345667899999999999998766432 22343333445555555555555444433
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=12.31 E-value=2.1e+02 Score=21.86 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.2
Q ss_pred HHHhhh
Q 020367 160 VVAINQ 165 (327)
Q Consensus 160 ~~~~Nd 165 (327)
.++..+
T Consensus 111 i~i~~~ 116 (199)
T d1iwga7 111 IVVVEN 116 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 4
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=10.73 E-value=1.3e+02 Score=16.27 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=8.7
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhc
Q 020367 206 AVMIRSPPFIWAVIAWIFVGTAY 228 (327)
Q Consensus 206 a~~lg~~~~~~~ll~~~~l~~~Y 228 (327)
++--||..|.+..+..++..++|
T Consensus 11 ayekgwlafslamlfvfialiay 33 (34)
T d1xmeb2 11 AYEKGWLAFSLAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhc
Confidence 34444434433333233333444
No 5
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.19 E-value=34 Score=28.64 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHHH
Q 020367 150 LVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205 (327)
Q Consensus 150 ~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l 205 (327)
..+.=+++.+.-+.+|+.|-+.=|.+ +|-.........++..+-.++..++-+
T Consensus 45 a~aiEllH~asLihDDi~D~~~~RRg---~pt~~~~~G~~~Ail~gd~l~~~a~~~ 97 (291)
T d2q80a1 45 IEVTEMLHNASLLIDDIEDNSKLRRG---FPVAHSIYGIPSVINSANYVYFLGLEK 97 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEETT---EECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccccC---CCccccccchhhhhhHHHHHHHHHHHh
Confidence 34456789999999999766544433 343444455666666665565555443
No 6
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.82 E-value=24 Score=30.50 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCChHH----------HHHcCCcccceeecccc
Q 020367 290 FCVVIAFIKDLHDVDG----------DKKFGIKTLSVMLGKER 322 (327)
Q Consensus 290 ~~~~~~~~~di~Dieg----------D~~~G~~Tlpv~lG~~~ 322 (327)
+..+..+..|+.|+.| |.+.|++|+|+.+..+.
T Consensus 230 lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 230 MGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred cchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
Confidence 3455678888887754 77789999999886654
No 7
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=6.86 E-value=91 Score=22.10 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.4
Q ss_pred ChHHHHHcCCccccee
Q 020367 302 DVDGDKKFGIKTLSVM 317 (327)
Q Consensus 302 DiegD~~~G~~Tlpv~ 317 (327)
-.|.|..+|+||+.+|
T Consensus 11 Rfe~dIlsGkKTITIR 26 (103)
T d1te7a_ 11 RFQDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHHHTCCCEEEEE
T ss_pred hhhHHHhcCCceEEec
Confidence 3578999999999876
No 8
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=6.68 E-value=23 Score=29.65 Aligned_cols=52 Identities=8% Similarity=-0.091 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHHH
Q 020367 151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205 (327)
Q Consensus 151 la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~l 205 (327)
.+.=+++.+.-+..|+.|-+.=| |.+|-.........++..+-.++..++-+
T Consensus 60 aaiEliH~asLIhDDi~D~s~~R---RG~pt~h~~~g~~~ail~gd~l~~~a~~~ 111 (280)
T d1v4ea_ 60 AALELVHLASLLHDDVIDGARFR---RGKETINFMYGDKAAVAAGDLVLVSAFHT 111 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEE---TTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHhhhcccc---cccchhhhccchhhhhhhHHHHHHhhhhc
Confidence 35567899999999997743222 33444444455666666555555554443
No 9
>d1bhua_ b.11.1.3 (A:) Streptomyces metalloproteinase inhibitor, SMPI {Streptomyces nigrescens [TaxId: 1920]}
Probab=6.09 E-value=78 Score=21.34 Aligned_cols=19 Identities=32% Similarity=0.724 Sum_probs=16.6
Q ss_pred cccccccccccccccccCC
Q 020367 9 SFSLKYHPLQKAGCIKTLE 27 (327)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (327)
.|.|.|-|+.+--||+++-
T Consensus 51 hftlrygparkvtcvrfpc 69 (102)
T d1bhua_ 51 HFTLRYGPARKVTCVRFPC 69 (102)
T ss_dssp CCEEEEEECCCCCCSSSCC
T ss_pred eEEEeecCceeeEEEeecc
Confidence 5789999999999999863
No 10
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.86 E-value=68 Score=16.75 Aligned_cols=10 Identities=0% Similarity=-0.300 Sum_probs=6.5
Q ss_pred Ccccchhhhc
Q 020367 53 NSFYNLTNKI 62 (327)
Q Consensus 53 ~~~~~~~~~~ 62 (327)
|-|+||+|.-
T Consensus 2 pclnhhck~g 11 (26)
T d1nuba2 2 PCQNHHCKHG 11 (26)
T ss_dssp TTTTCCCCTT
T ss_pred cccccccccC
Confidence 5578886643
Done!