Query 020368
Match_columns 327
No_of_seqs 352 out of 1574
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:11:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719 Dual specificity phosp 100.0 1.9E-35 4E-40 252.2 11.9 156 54-211 1-174 (183)
2 KOG1718 Dual specificity phosp 99.9 1.9E-25 4.1E-30 193.4 13.0 127 86-218 40-167 (198)
3 smart00195 DSPc Dual specifici 99.9 8.3E-25 1.8E-29 184.8 15.0 114 86-205 24-137 (138)
4 PF00782 DSPc: Dual specificit 99.9 3.7E-25 8E-30 185.4 12.3 118 85-205 15-132 (133)
5 PRK12361 hypothetical protein; 99.9 9.2E-25 2E-29 224.0 13.6 151 52-206 64-236 (547)
6 cd00127 DSPc Dual specificity 99.9 2E-23 4.4E-28 175.5 14.1 115 86-204 25-139 (139)
7 PTZ00242 protein tyrosine phos 99.9 3.6E-23 7.8E-28 182.0 14.5 121 85-210 37-161 (166)
8 PTZ00393 protein tyrosine phos 99.9 1.1E-22 2.5E-27 186.7 14.9 118 84-207 112-229 (241)
9 KOG1716 Dual specificity phosp 99.9 3.7E-22 8E-27 189.5 14.6 126 85-213 97-222 (285)
10 KOG1717 Dual specificity phosp 99.9 3.8E-22 8.3E-27 183.7 11.4 124 84-211 193-316 (343)
11 KOG1720 Protein tyrosine phosp 99.8 1.4E-20 3E-25 168.5 14.6 116 86-206 92-207 (225)
12 COG2453 CDC14 Predicted protei 99.7 2.1E-16 4.5E-21 140.7 13.8 97 107-204 67-164 (180)
13 PF05706 CDKN3: Cyclin-depende 99.5 1.7E-14 3.7E-19 126.1 7.6 94 86-180 69-168 (168)
14 PF03162 Y_phosphatase2: Tyros 99.4 2.3E-13 5.1E-18 119.6 6.6 115 86-204 30-147 (164)
15 KOG2836 Protein tyrosine phosp 99.4 3E-12 6.4E-17 107.9 12.5 118 81-204 34-153 (173)
16 smart00012 PTPc_DSPc Protein t 99.4 4.3E-12 9.2E-17 100.5 11.6 89 115-203 5-102 (105)
17 smart00404 PTPc_motif Protein 99.4 4.3E-12 9.2E-17 100.5 11.6 89 115-203 5-102 (105)
18 cd00047 PTPc Protein tyrosine 99.2 7.6E-11 1.6E-15 107.8 10.9 92 112-203 129-228 (231)
19 PRK15375 pathogenicity island 99.2 1.7E-10 3.7E-15 115.9 12.1 95 113-207 423-530 (535)
20 smart00194 PTPc Protein tyrosi 99.2 1.9E-10 4.2E-15 107.0 10.8 90 113-202 158-254 (258)
21 TIGR01244 conserved hypothetic 99.1 5.3E-10 1.1E-14 95.1 11.6 97 86-189 25-127 (135)
22 PHA02742 protein tyrosine phos 98.9 8.3E-09 1.8E-13 99.1 11.4 85 119-203 190-291 (303)
23 KOG2283 Clathrin coat dissocia 98.9 2.9E-09 6.3E-14 106.5 8.5 117 88-210 53-177 (434)
24 KOG2386 mRNA capping enzyme, g 98.9 2.6E-09 5.6E-14 104.9 7.9 119 86-205 61-183 (393)
25 PHA02740 protein tyrosine phos 98.9 9.6E-09 2.1E-13 98.5 11.6 84 119-202 185-282 (298)
26 PLN02727 NAD kinase 98.9 4.9E-09 1.1E-13 111.5 10.2 86 86-174 279-369 (986)
27 KOG0792 Protein tyrosine phosp 98.9 6.9E-09 1.5E-13 110.7 10.0 93 119-211 1035-1134(1144)
28 PHA02746 protein tyrosine phos 98.9 1.8E-08 3.9E-13 97.7 11.1 91 113-203 202-309 (323)
29 PHA02747 protein tyrosine phos 98.8 1.9E-08 4.1E-13 97.0 11.1 82 119-200 191-288 (312)
30 PF00102 Y_phosphatase: Protei 98.8 2.7E-08 5.9E-13 89.9 10.5 90 114-203 136-232 (235)
31 PHA02738 hypothetical protein; 98.8 4.2E-08 9E-13 95.0 10.9 85 119-203 186-289 (320)
32 PF14566 PTPlike_phytase: Inos 98.8 1.1E-08 2.4E-13 88.5 6.2 63 106-170 86-148 (149)
33 PF13350 Y_phosphatase3: Tyros 98.7 2E-08 4.4E-13 87.7 6.4 99 78-182 33-159 (164)
34 KOG0790 Protein tyrosine phosp 98.7 3.2E-08 7E-13 97.5 7.7 146 53-201 346-514 (600)
35 PF04273 DUF442: Putative phos 98.7 6E-08 1.3E-12 80.0 6.7 75 86-166 25-105 (110)
36 KOG1572 Predicted protein tyro 98.5 1.2E-06 2.6E-11 80.6 12.0 124 57-187 51-188 (249)
37 COG5599 PTP2 Protein tyrosine 98.5 1.7E-07 3.7E-12 87.4 6.4 91 113-207 185-293 (302)
38 COG5350 Predicted protein tyro 98.5 8.6E-07 1.9E-11 76.5 9.9 112 86-198 30-146 (172)
39 KOG0791 Protein tyrosine phosp 98.2 7E-06 1.5E-10 79.7 10.5 89 117-205 257-351 (374)
40 COG2365 Protein tyrosine/serin 98.2 5.8E-06 1.3E-10 77.4 8.2 49 146-194 136-184 (249)
41 KOG0789 Protein tyrosine phosp 98.1 9.1E-06 2E-10 80.3 9.2 86 119-204 271-363 (415)
42 COG3453 Uncharacterized protei 98.1 2.7E-05 6E-10 64.8 9.6 92 86-184 26-123 (130)
43 KOG0793 Protein tyrosine phosp 97.7 6.9E-05 1.5E-09 77.8 6.9 89 114-202 894-989 (1004)
44 KOG4228 Protein tyrosine phosp 97.6 8.6E-05 1.9E-09 80.6 5.8 80 120-202 703-791 (1087)
45 KOG4228 Protein tyrosine phosp 97.4 0.00033 7.1E-09 76.2 6.7 91 113-204 984-1081(1087)
46 PF04179 Init_tRNA_PT: Initiat 97.2 0.0042 9.1E-08 63.0 11.8 113 87-203 317-449 (451)
47 PF14671 DSPn: Dual specificit 96.0 0.018 3.8E-07 49.6 6.4 67 121-188 39-112 (141)
48 KOG4471 Phosphatidylinositol 3 90.9 0.37 7.9E-06 50.2 5.2 32 134-165 362-393 (717)
49 PF06602 Myotub-related: Myotu 82.0 3.1 6.6E-05 41.1 6.0 22 144-165 229-250 (353)
50 cd01518 RHOD_YceA Member of th 79.7 9.7 0.00021 29.7 7.1 28 144-174 59-86 (101)
51 PRK01415 hypothetical protein; 79.6 3.8 8.2E-05 38.6 5.4 28 144-174 169-196 (247)
52 KOG1089 Myotubularin-related p 77.3 4.2 9E-05 42.5 5.4 32 134-165 331-363 (573)
53 COG0607 PspE Rhodanese-related 77.3 4.4 9.6E-05 31.7 4.5 68 87-174 18-86 (110)
54 COG1054 Predicted sulfurtransf 73.6 12 0.00026 36.2 7.0 105 41-169 86-193 (308)
55 PLN02160 thiosulfate sulfurtra 72.7 5.5 0.00012 33.6 4.2 29 143-174 78-106 (136)
56 cd01533 4RHOD_Repeat_2 Member 61.2 20 0.00044 28.3 5.2 27 145-174 65-91 (109)
57 cd01448 TST_Repeat_1 Thiosulfa 58.9 21 0.00045 28.7 4.9 30 144-175 77-106 (122)
58 PF00581 Rhodanese: Rhodanese- 58.1 42 0.00091 25.8 6.5 80 88-174 12-97 (113)
59 PRK00142 putative rhodanese-re 55.2 26 0.00056 34.0 5.6 27 145-174 170-196 (314)
60 PRK05320 rhodanese superfamily 54.8 27 0.00059 32.9 5.6 27 145-174 174-200 (257)
61 TIGR03865 PQQ_CXXCW PQQ-depend 54.1 39 0.00085 29.3 6.1 29 144-174 114-142 (162)
62 cd01523 RHOD_Lact_B Member of 51.4 17 0.00037 28.2 3.1 29 144-175 59-87 (100)
63 cd01528 RHOD_2 Member of the R 47.9 42 0.0009 26.0 4.9 28 145-175 57-84 (101)
64 cd01520 RHOD_YbbB Member of th 46.0 47 0.001 27.2 5.1 30 143-174 83-112 (128)
65 PF13292 DXP_synthase_N: 1-deo 45.0 27 0.00058 33.4 3.8 41 106-154 229-269 (270)
66 cd01522 RHOD_1 Member of the R 43.2 40 0.00088 27.2 4.2 20 144-164 62-81 (117)
67 TIGR00190 thiC thiamine biosyn 41.6 88 0.0019 31.7 6.9 115 86-207 88-249 (423)
68 PF03861 ANTAR: ANTAR domain; 41.0 43 0.00092 23.8 3.6 25 162-186 16-40 (56)
69 PRK13352 thiamine biosynthesis 38.8 88 0.0019 31.8 6.5 75 133-207 143-252 (431)
70 COG0422 ThiC Thiamine biosynth 38.5 1.2E+02 0.0026 30.5 7.3 116 86-208 89-251 (432)
71 PF02673 BacA: Bacitracin resi 36.1 35 0.00077 32.2 3.2 27 154-182 159-185 (259)
72 PF10673 DUF2487: Protein of u 34.2 57 0.0012 28.2 3.9 49 54-102 48-98 (142)
73 smart00400 ZnF_CHCC zinc finge 34.0 46 0.001 23.4 2.8 32 150-183 23-54 (55)
74 PF03668 ATP_bind_2: P-loop AT 33.8 72 0.0016 30.7 4.8 18 148-165 244-261 (284)
75 TIGR01245 trpD anthranilate ph 33.7 1.3E+02 0.0027 29.4 6.7 70 135-209 90-164 (330)
76 cd01534 4RHOD_Repeat_3 Member 33.7 58 0.0013 24.9 3.6 27 145-174 55-81 (95)
77 PRK12554 undecaprenyl pyrophos 31.8 43 0.00093 32.0 3.0 26 155-182 166-191 (276)
78 TIGR03167 tRNA_sel_U_synt tRNA 31.4 1.2E+02 0.0027 29.3 6.2 27 146-174 74-100 (311)
79 TIGR00753 undec_PP_bacA undeca 30.3 48 0.001 31.3 3.0 26 155-182 160-185 (255)
80 PRK00281 undecaprenyl pyrophos 29.6 50 0.0011 31.4 3.0 26 155-182 164-189 (268)
81 PF01964 ThiC: ThiC family; I 28.9 1.9E+02 0.004 29.4 6.9 123 86-208 87-249 (420)
82 cd01532 4RHOD_Repeat_1 Member 28.2 1E+02 0.0022 23.5 4.1 29 145-174 49-77 (92)
83 PRK05416 glmZ(sRNA)-inactivati 28.0 1E+02 0.0022 29.6 4.8 18 148-165 247-264 (288)
84 PF01807 zf-CHC2: CHC2 zinc fi 27.8 62 0.0013 25.7 2.8 36 150-187 54-89 (97)
85 cd01529 4RHOD_Repeats Member o 27.5 80 0.0017 24.1 3.4 28 144-174 54-81 (96)
86 COG2927 HolC DNA polymerase II 27.4 60 0.0013 28.1 2.9 21 134-154 17-37 (144)
87 PF04364 DNA_pol3_chi: DNA pol 27.3 99 0.0022 26.1 4.2 24 132-155 15-38 (137)
88 PRK09284 thiamine biosynthesis 27.2 3.6E+02 0.0078 28.6 8.8 76 132-207 294-402 (607)
89 COG1154 Dxs Deoxyxylulose-5-ph 27.0 79 0.0017 33.6 4.1 48 104-159 235-282 (627)
90 TIGR00204 dxs 1-deoxy-D-xylulo 27.0 81 0.0018 33.5 4.4 47 106-160 232-278 (617)
91 cd01525 RHOD_Kc Member of the 27.0 88 0.0019 24.1 3.6 26 146-174 65-90 (105)
92 cd01447 Polysulfide_ST Polysul 26.4 80 0.0017 24.1 3.3 28 144-174 59-86 (103)
93 PRK10886 DnaA initiator-associ 26.0 1.7E+02 0.0036 26.4 5.6 38 129-169 24-61 (196)
94 PLN02444 HMP-P synthase 25.2 2.1E+02 0.0046 30.3 6.7 115 86-207 248-407 (642)
95 PF10302 DUF2407: DUF2407 ubiq 25.2 34 0.00075 27.5 0.9 10 147-156 86-95 (97)
96 PRK11493 sseA 3-mercaptopyruva 24.8 54 0.0012 30.9 2.3 28 144-174 229-256 (281)
97 cd01519 RHOD_HSP67B2 Member of 24.5 1E+02 0.0023 23.7 3.7 27 145-174 65-91 (106)
98 PF03102 NeuB: NeuB family; I 24.4 61 0.0013 30.3 2.6 76 77-157 55-152 (241)
99 PRK07411 hypothetical protein; 24.3 78 0.0017 31.6 3.5 27 145-174 341-367 (390)
100 TIGR00853 pts-lac PTS system, 24.3 64 0.0014 25.5 2.4 17 147-164 4-20 (95)
101 cd01444 GlpE_ST GlpE sulfurtra 24.2 1.2E+02 0.0027 22.7 3.9 29 143-174 53-81 (96)
102 PRK05728 DNA polymerase III su 24.1 1E+02 0.0022 26.2 3.7 25 131-155 14-38 (142)
103 cd01443 Cdc25_Acr2p Cdc25 enzy 24.0 1.8E+02 0.0039 23.0 5.0 19 146-164 66-84 (113)
104 COG0794 GutQ Predicted sugar p 23.9 1.4E+02 0.0031 27.2 4.8 36 130-171 26-61 (202)
105 cd01526 RHOD_ThiF Member of th 23.7 89 0.0019 25.2 3.2 28 144-174 70-97 (122)
106 cd01531 Acr2p Eukaryotic arsen 23.5 1.7E+02 0.0037 23.1 4.8 22 145-166 61-82 (113)
107 PF04343 DUF488: Protein of un 23.3 2.7E+02 0.0059 22.6 6.0 39 83-121 8-53 (122)
108 PLN02225 1-deoxy-D-xylulose-5- 23.3 1.1E+02 0.0023 33.3 4.4 46 106-159 320-367 (701)
109 COG1660 Predicted P-loop-conta 22.5 1.4E+02 0.0031 28.7 4.6 18 148-165 245-262 (286)
110 PRK05569 flavodoxin; Provision 22.4 2.6E+02 0.0055 22.9 5.8 89 110-205 48-137 (141)
111 cd01527 RHOD_YgaP Member of th 22.0 1.1E+02 0.0024 23.4 3.3 18 144-162 52-69 (99)
112 cd01530 Cdc25 Cdc25 phosphatas 21.4 1E+02 0.0022 25.1 3.1 25 144-170 66-91 (121)
113 PRK10287 thiosulfate:cyanide s 21.0 1.6E+02 0.0035 23.6 4.1 19 145-164 59-77 (104)
114 cd01449 TST_Repeat_2 Thiosulfa 20.5 2.1E+02 0.0045 22.5 4.7 28 144-174 76-103 (118)
115 cd05567 PTS_IIB_mannitol PTS_I 20.2 1E+02 0.0022 23.6 2.7 15 147-161 1-15 (87)
116 PRK05772 translation initiatio 20.0 2.1E+02 0.0045 28.6 5.4 15 143-157 164-178 (363)
117 PRK06646 DNA polymerase III su 20.0 1.3E+02 0.0029 26.1 3.7 26 130-155 13-38 (154)
No 1
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=1.9e-35 Score=252.21 Aligned_cols=156 Identities=61% Similarity=1.006 Sum_probs=146.0
Q ss_pred hcceeeecccchhhhhhccccccchhhhhhhh------------------cCCccEEEEecCCCCccCCcccccccCcEE
Q 020368 54 AGARALFYPTLLYNVVRNKFQAEFRWWDRVDE------------------ELGVGGVITLNEPYETLVPTSLYHAHCIDH 115 (327)
Q Consensus 54 ~~~r~lf~P~l~~nvv~~~~~~~~~~~~ri~~------------------~~GI~~VVnL~~~~e~~~~~~~~~~~gI~y 115 (327)
.|+|++|||||+||+++++ .+.++|| ++++ ++|++.|+++++++|...+...|+..||++
T Consensus 1 ~~ar~~fyptllynvv~~k-~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~ 78 (183)
T KOG1719|consen 1 MGARVLFYPTLLYNVVREK-ASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEF 78 (183)
T ss_pred CCceeeecHHHHHHHHHHH-Hhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhcccee
Confidence 4789999999999999999 7889999 5554 779999999999999888888999999999
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcCCHH
Q 020368 116 LVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASA 195 (327)
Q Consensus 116 l~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~ 195 (327)
+.+|+.|+...|+.+.+.++++||++....|+.|||||+||++||+|+++||||++.+|++++|++++|++||.+.+.++
T Consensus 79 L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~ 158 (183)
T KOG1719|consen 79 LVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPA 158 (183)
T ss_pred EEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 020368 196 QWQAVLEYYNLRVNMA 211 (327)
Q Consensus 196 q~~~L~~f~~l~~~~~ 211 (327)
||+.|.+|++....+.
T Consensus 159 Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 159 QWDVLKEFYKQIVANA 174 (183)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999996544443
No 2
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.93 E-value=1.9e-25 Score=193.41 Aligned_cols=127 Identities=22% Similarity=0.325 Sum_probs=115.5
Q ss_pred cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHH
Q 020368 86 ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~ 165 (327)
+.||++|||.+.+. |...+ .+++|..+|+.|....++.++|+.+.|.|+....+|+++||||.||++||++++.
T Consensus 40 ~~~It~IiNat~E~----pn~~l--~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLCl 113 (198)
T KOG1718|consen 40 KRKITCIINATTEV----PNTSL--PDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCL 113 (198)
T ss_pred hcCceEEEEcccCC----CCccC--CCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHH
Confidence 57999999999974 33333 3789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHH-HHhhhccccCCCcC
Q 020368 166 CYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYY-NLRVNMACLYGHVA 218 (327)
Q Consensus 166 aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~-~l~~~~~~~~~~~~ 218 (327)
||||++.+|++.||+.+++++||.+.||.+||+||..|| +++++++++-..++
T Consensus 114 AYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~sV~MV~~p 167 (198)
T KOG1718|consen 114 AYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNASVRMVQTP 167 (198)
T ss_pred HHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCeEEEEecc
Confidence 999999999999999999999999999999999999999 78888877654433
No 3
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.93 E-value=8.3e-25 Score=184.77 Aligned_cols=114 Identities=26% Similarity=0.418 Sum_probs=105.3
Q ss_pred cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHH
Q 020368 86 ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~ 165 (327)
++||++||||+.+.+. +...+++|+++|+.|....+..+.+.++++||+....+|++|||||.+|+|||+++++
T Consensus 24 ~~gi~~Vi~l~~~~~~------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 24 KLGITHVINVTNEVPN------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred HcCCCEEEEccCCCCC------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 5899999999987542 1357899999999997667888999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHH
Q 020368 166 CYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYN 205 (327)
Q Consensus 166 aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~ 205 (327)
||||+..++++++|+++++++||.+.||++|+++|+.|++
T Consensus 98 ~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 98 AYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred HHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999985
No 4
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.92 E-value=3.7e-25 Score=185.40 Aligned_cols=118 Identities=33% Similarity=0.484 Sum_probs=108.5
Q ss_pred hcCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHH
Q 020368 85 EELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVV 164 (327)
Q Consensus 85 ~~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv 164 (327)
.++||++|||++.+.+.. ..+...++.|+++|+.|....+..+.+..+++||+++..+|++|||||.+|+|||++++
T Consensus 15 ~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 91 (133)
T PF00782_consen 15 KNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVA 91 (133)
T ss_dssp HHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHH
T ss_pred HHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHH
Confidence 358999999999985421 34556789999999999777889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHH
Q 020368 165 ICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYN 205 (327)
Q Consensus 165 ~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~ 205 (327)
+||||...+|++++|+++++++||.+.|++.|+++|.+|++
T Consensus 92 ~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 92 AAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999985
No 5
>PRK12361 hypothetical protein; Provisional
Probab=99.92 E-value=9.2e-25 Score=224.00 Aligned_cols=151 Identities=25% Similarity=0.375 Sum_probs=126.0
Q ss_pred hhhcceeeecccchhhhh----hccccccchhhhhhhh-----------------cCCccEEEEecCCCCccCCcccccc
Q 020368 52 IGAGARALFYPTLLYNVV----RNKFQAEFRWWDRVDE-----------------ELGVGGVITLNEPYETLVPTSLYHA 110 (327)
Q Consensus 52 ~~~~~r~lf~P~l~~nvv----~~~~~~~~~~~~ri~~-----------------~~GI~~VVnL~~~~e~~~~~~~~~~ 110 (327)
.+..+||+|+||+++.++ ..+. ++.+++++|.+ ++||++||||+.+.+.. ......
T Consensus 64 ~~~~~~~l~~P~l~~~~~~~~~~r~~-~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~--~~~~~~ 140 (547)
T PRK12361 64 IPWYIRWVFIPFLLGTRLYNAWARKR-DSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGL--DWSLTE 140 (547)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcc-cCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccc--cccccc
Confidence 367899999999955444 3333 23456666665 48999999999876531 112224
Q ss_pred cCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHHh-cCCCHHHHHHHHHhhCCC
Q 020368 111 HCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHH-KQMTPDAAYDYVRSIRPR 189 (327)
Q Consensus 111 ~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~aYLm~~-~g~s~~eAl~~Vr~~RP~ 189 (327)
.+++|+++|+.|.. .|..++++++++||++.+++|++|||||.+|+|||+++++||||.+ .++++++|+++||++||.
T Consensus 141 ~~i~yl~iPi~D~~-~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~ 219 (547)
T PRK12361 141 EDIDYLNIPILDHS-VPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKT 219 (547)
T ss_pred cCceEEEeecCCCC-CCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCC
Confidence 67999999999965 7889999999999999999999999999999999999999999976 589999999999999999
Q ss_pred CcCCHHHHHHHHHHHHH
Q 020368 190 VLLASAQWQAVLEYYNL 206 (327)
Q Consensus 190 i~~n~~q~~~L~~f~~l 206 (327)
+.||+.|+++|++|++.
T Consensus 220 v~~n~~q~~~l~~~~~~ 236 (547)
T PRK12361 220 ARLNKRQLRALEKMLEQ 236 (547)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 99999999999999853
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.90 E-value=2e-23 Score=175.46 Aligned_cols=115 Identities=27% Similarity=0.368 Sum_probs=105.3
Q ss_pred cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHH
Q 020368 86 ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~ 165 (327)
.+||++||||+.+.+. ..+...|++|+++|+.|....+....+..+++||+....++++|||||.+|+|||+++++
T Consensus 25 ~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 100 (139)
T cd00127 25 KLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVI 100 (139)
T ss_pred HcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHH
Confidence 5899999999998653 344567999999999998766777889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHH
Q 020368 166 CYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYY 204 (327)
Q Consensus 166 aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~ 204 (327)
+|||...++++++|++++|++||.+.||+.|+.||.+|+
T Consensus 101 ~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 101 AYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999985
No 7
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.90 E-value=3.6e-23 Score=182.04 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=107.1
Q ss_pred hcCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhC----CCcEEEEcCCCCChH
Q 020368 85 EELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALS----RQTTYVHCKAGRGRS 160 (327)
Q Consensus 85 ~~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~----g~~VLVHC~aG~gRS 160 (327)
.++||++||+++++. ++...+...|++|+++|+.|.. +|+.+.+.++++++++.+.. |++|+|||.+|+|||
T Consensus 37 ~~~gI~~Iv~l~~~~---~~~~~~~~~gi~~~~~p~~D~~-~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRS 112 (166)
T PTZ00242 37 QRYNVTHLVRVCGPT---YDAELLEKNGIEVHDWPFDDGA-PPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRA 112 (166)
T ss_pred HhCCCeEEEecCCCC---CCHHHHHHCCCEEEecCCCCCC-CCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHH
Confidence 468999999998753 3555677889999999999964 88999999999999988755 899999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhc
Q 020368 161 TTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNM 210 (327)
Q Consensus 161 gtvv~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~l~~~~ 210 (327)
||++++|||.+.++++++|++++|++||.++ ++.|+.+|++|.+..+++
T Consensus 113 gt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 113 PILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhccC
Confidence 9999999999888999999999999999876 799999999999765554
No 8
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.89 E-value=1.1e-22 Score=186.74 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=107.2
Q ss_pred hhcCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHH
Q 020368 84 DEELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTV 163 (327)
Q Consensus 84 ~~~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtv 163 (327)
.+++||++||+++++ .++...++..||+++++|++|. .+|..+.+++++++++..+..|++|+|||.+|+||||++
T Consensus 112 Lk~~gV~~lVrlcE~---~Yd~~~~~~~GI~~~~lpipDg-~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl 187 (241)
T PTZ00393 112 MKNYNVTDLVRTCER---TYNDGEITSAGINVHELIFPDG-DAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVL 187 (241)
T ss_pred HHHcCCCEEEECCCC---CCCHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 347899999999885 3566677889999999999996 488999999999999999989999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHh
Q 020368 164 VICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLR 207 (327)
Q Consensus 164 v~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~l~ 207 (327)
+++|||. .|+++++|+++||++||.++ +..|+++|++|++..
T Consensus 188 ~AayLI~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~ 229 (241)
T PTZ00393 188 ASIVLIE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKK 229 (241)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Confidence 9999998 79999999999999999985 889999999999543
No 9
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.88 E-value=3.7e-22 Score=189.52 Aligned_cols=126 Identities=25% Similarity=0.358 Sum_probs=112.2
Q ss_pred hcCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHH
Q 020368 85 EELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVV 164 (327)
Q Consensus 85 ~~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv 164 (327)
.++||++|+|+....+... .....+++|+++|+.|....++..+|+++++||+.+..+|++|||||.+|++||+|++
T Consensus 97 ~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~v 173 (285)
T KOG1716|consen 97 KKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLV 173 (285)
T ss_pred HHcCCCEEEEecccCCccc---cccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHH
Confidence 4789999999999754221 1223389999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhcccc
Q 020368 165 ICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNMACL 213 (327)
Q Consensus 165 ~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~l~~~~~~~ 213 (327)
+||||++.++++++|+++|+.+||.+.||.+|+.||.+|++.+..+...
T Consensus 174 iAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~ 222 (285)
T KOG1716|consen 174 IAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPS 222 (285)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCcc
Confidence 9999999999999999999999999999999999999999766655433
No 10
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.87 E-value=3.8e-22 Score=183.71 Aligned_cols=124 Identities=22% Similarity=0.259 Sum_probs=112.4
Q ss_pred hhcCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHH
Q 020368 84 DEELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTV 163 (327)
Q Consensus 84 ~~~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtv 163 (327)
..++||++|||++... |..+.+...+.|..||+.|+........|++++.||++++.++..|||||-+|++||.|+
T Consensus 193 Lkk~gI~yviNVTpnl----pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTv 268 (343)
T KOG1717|consen 193 LKKYGIKYVINVTPNL----PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTV 268 (343)
T ss_pred HHhcCceEEEecCCCC----cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHH
Confidence 3478999999999864 333444566899999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhcc
Q 020368 164 VICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNMA 211 (327)
Q Consensus 164 v~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~l~~~~~ 211 (327)
++||||++..+++.+|+++|+.++..+.||..|+.||..|++.+..+.
T Consensus 269 tvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s 316 (343)
T KOG1717|consen 269 TVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLES 316 (343)
T ss_pred HHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999997776554
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.85 E-value=1.4e-20 Score=168.48 Aligned_cols=116 Identities=26% Similarity=0.373 Sum_probs=109.3
Q ss_pred cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHH
Q 020368 86 ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~ 165 (327)
..+++.++.|++. .++.+.+...||.++++|+.|. .+|.++.+.++++.++.+.+ |++|.|||++|.|||||+++
T Consensus 92 ~~~v~s~vrln~~---~yd~~~f~~~Gi~h~~l~f~Dg-~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liA 166 (225)
T KOG1720|consen 92 NNNVTSIVRLNKR---LYDAKRFTDAGIDHHDLFFADG-STPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIA 166 (225)
T ss_pred hcccceEEEcCCC---CCChHHhcccCceeeeeecCCC-CCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHH
Confidence 5789999999996 5788888999999999999995 59999999999999999988 99999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHH
Q 020368 166 CYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNL 206 (327)
Q Consensus 166 aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~l 206 (327)
||||+..++|+.||++++|..||+++.++.|...+.+|..+
T Consensus 167 c~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~ 207 (225)
T KOG1720|consen 167 CYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDL 207 (225)
T ss_pred HHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.70 E-value=2.1e-16 Score=140.67 Aligned_cols=97 Identities=32% Similarity=0.402 Sum_probs=83.8
Q ss_pred cccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHHh-cCCCHHHHHHHHHh
Q 020368 107 LYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHH-KQMTPDAAYDYVRS 185 (327)
Q Consensus 107 ~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~aYLm~~-~g~s~~eAl~~Vr~ 185 (327)
.....++.++++|+.|+. .|...++.+++++|++..++|++|+|||.+|+|||||+++||||.+ ..+..++++..++.
T Consensus 67 ~~~~~~~~~~~~~~~D~~-~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~ 145 (180)
T COG2453 67 IEENDGIQVLHLPILDGT-VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRR 145 (180)
T ss_pred eeccCCceeeeeeecCCC-CCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 344678999999999975 8888999999999999999999999999999999999999999998 45588888888888
Q ss_pred hCCCCcCCHHHHHHHHHHH
Q 020368 186 IRPRVLLASAQWQAVLEYY 204 (327)
Q Consensus 186 ~RP~i~~n~~q~~~L~~f~ 204 (327)
+||..+....|..+..++.
T Consensus 146 ~r~~~v~~~~q~~~~~e~~ 164 (180)
T COG2453 146 RRPGAVVTEIQHLFELEQE 164 (180)
T ss_pred cCCcccccHHHHHHHHHHH
Confidence 8987666666666666555
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.53 E-value=1.7e-14 Score=126.10 Aligned_cols=94 Identities=27% Similarity=0.429 Sum_probs=65.3
Q ss_pred cCCccEEEEecCCCCcc---CC--cccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChH
Q 020368 86 ELGVGGVITLNEPYETL---VP--TSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRS 160 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~---~~--~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRS 160 (327)
..|++.||+|.+..|.. .+ ...+++.|+.++|+|+.|.. +|....+.++++.|...+++|++|+|||.+|.|||
T Consensus 69 ~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~-aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRt 147 (168)
T PF05706_consen 69 DWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS-APDFAAAWQILEELAARLENGRKVLVHCRGGLGRT 147 (168)
T ss_dssp HTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS----HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHH
T ss_pred HCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHH
Confidence 57999999999987651 12 23678899999999999976 77788888899999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCHHHHH
Q 020368 161 TTVVICYLVHHK-QMTPDAAY 180 (327)
Q Consensus 161 gtvv~aYLm~~~-g~s~~eAl 180 (327)
|+|++|+|+.-. .+++++|+
T Consensus 148 GlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 148 GLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHcCCCChhhcC
Confidence 999999999743 47999986
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.42 E-value=2.3e-13 Score=119.60 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=71.1
Q ss_pred cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCC---CCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHH
Q 020368 86 ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCF---APSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTT 162 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~---~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgt 162 (327)
++|+++||+|+.+........+.++.||+++++++..... ....+.+.++++.|.+. .+.||||||..|..|||+
T Consensus 30 ~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~--~n~PvLiHC~~G~~rTG~ 107 (164)
T PF03162_consen 30 RLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP--RNYPVLIHCNHGKDRTGL 107 (164)
T ss_dssp HHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G--GG-SEEEE-SSSSSHHHH
T ss_pred HCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC--CCCCEEEEeCCCCcchhh
Confidence 4899999999987432222235678999999999987542 34567788888887653 357999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHH
Q 020368 163 VVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYY 204 (327)
Q Consensus 163 vv~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~ 204 (327)
+++||- +.+||+..+|++..+..-.. ..+..-.++++.|.
T Consensus 108 vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~ 147 (164)
T PF03162_consen 108 VVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFD 147 (164)
T ss_dssp HHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT--
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcC
Confidence 999999 67999999999998875422 34555666666666
No 15
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.42 E-value=3e-12 Score=107.89 Aligned_cols=118 Identities=23% Similarity=0.234 Sum_probs=97.0
Q ss_pred hhhhhcCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhC--CCcEEEEcCCCCC
Q 020368 81 DRVDEELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALS--RQTTYVHCKAGRG 158 (327)
Q Consensus 81 ~ri~~~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~--g~~VLVHC~aG~g 158 (327)
..-++++|+++||-+|+.. ++....+..||..+.+|..|. .+|..+-++..+..+....++ |.-|.|||.+|.|
T Consensus 34 ieELkKygvttvVRVCe~T---Ydt~~lek~GI~Vldw~f~dg-~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglg 109 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEPT---YDTTPLEKEGITVLDWPFDDG-APPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLG 109 (173)
T ss_pred HHHHHhcCCeEEEEecccc---cCCchhhhcCceEeecccccC-CCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccC
Confidence 3334578999999999973 566677889999999999994 466666677766665444333 6889999999999
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHH
Q 020368 159 RSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYY 204 (327)
Q Consensus 159 RSgtvv~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~ 204 (327)
|++.+++.-|+. .||..++|++++|.+|-++ .|..|..+|.+|.
T Consensus 110 rapvlvalalie-~gmkyedave~ir~krrga-~n~kql~~lekyr 153 (173)
T KOG2836|consen 110 RAPVLVALALIE-AGMKYEDAVEMIRQKRRGA-INSKQLLYLEKYR 153 (173)
T ss_pred cchHHHHHHHHH-ccccHHHHHHHHHHHhhcc-ccHHHHHHHHHhC
Confidence 999999999997 8999999999999999655 5888999998886
No 16
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.39 E-value=4.3e-12 Score=100.51 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=72.0
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHHHh---CCCcEEEEcCCCCChHHHHHHHHHHHhc------CCCHHHHHHHHHh
Q 020368 115 HLVIPTRDYCFAPSLGDICRAVDFICENAL---SRQTTYVHCKAGRGRSTTVVICYLVHHK------QMTPDAAYDYVRS 185 (327)
Q Consensus 115 yl~iPi~D~~~~p~~~~~~~av~fI~~~~~---~g~~VLVHC~aG~gRSgtvv~aYLm~~~------g~s~~eAl~~Vr~ 185 (327)
|.+.+++|+..+...+.+.++++.+++... .+++|+|||.+|+||||+++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 445556676544455788888888877654 2679999999999999999999999653 3689999999999
Q ss_pred hCCCCcCCHHHHHHHHHH
Q 020368 186 IRPRVLLASAQWQAVLEY 203 (327)
Q Consensus 186 ~RP~i~~n~~q~~~L~~f 203 (327)
.||....+..|+.++...
T Consensus 85 ~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 85 QRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhCCcHHHHHHHHHH
Confidence 999999999999887654
No 17
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.39 E-value=4.3e-12 Score=100.51 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=72.0
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHHHh---CCCcEEEEcCCCCChHHHHHHHHHHHhc------CCCHHHHHHHHHh
Q 020368 115 HLVIPTRDYCFAPSLGDICRAVDFICENAL---SRQTTYVHCKAGRGRSTTVVICYLVHHK------QMTPDAAYDYVRS 185 (327)
Q Consensus 115 yl~iPi~D~~~~p~~~~~~~av~fI~~~~~---~g~~VLVHC~aG~gRSgtvv~aYLm~~~------g~s~~eAl~~Vr~ 185 (327)
|.+.+++|+..+...+.+.++++.+++... .+++|+|||.+|+||||+++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 445556676544455788888888877654 2679999999999999999999999653 3689999999999
Q ss_pred hCCCCcCCHHHHHHHHHH
Q 020368 186 IRPRVLLASAQWQAVLEY 203 (327)
Q Consensus 186 ~RP~i~~n~~q~~~L~~f 203 (327)
.||....+..|+.++...
T Consensus 85 ~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 85 QRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhCCcHHHHHHHHHH
Confidence 999999999999887654
No 18
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.22 E-value=7.6e-11 Score=107.83 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=73.3
Q ss_pred CcEEEEEe-cCCCCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEcCCCCChHHHHHHHHHHHh-----cCCCHHHHHHHH
Q 020368 112 CIDHLVIP-TRDYCFAPSLGDICRAVDFICENAL--SRQTTYVHCKAGRGRSTTVVICYLVHH-----KQMTPDAAYDYV 183 (327)
Q Consensus 112 gI~yl~iP-i~D~~~~p~~~~~~~av~fI~~~~~--~g~~VLVHC~aG~gRSgtvv~aYLm~~-----~g~s~~eAl~~V 183 (327)
.+.+++++ +.|+..++....+.++++.+++... .++||+|||.+|+||||++++++++.. ..+++.+++..+
T Consensus 129 ~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~i 208 (231)
T cd00047 129 TVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKEL 208 (231)
T ss_pred EEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35555554 5676645555778888888776553 367999999999999999999988743 257999999999
Q ss_pred HhhCCCCcCCHHHHHHHHHH
Q 020368 184 RSIRPRVLLASAQWQAVLEY 203 (327)
Q Consensus 184 r~~RP~i~~n~~q~~~L~~f 203 (327)
|++||.++.++.|+.++...
T Consensus 209 R~~R~~~v~~~~Qy~f~~~~ 228 (231)
T cd00047 209 RSQRPGMVQTEEQYIFLYRA 228 (231)
T ss_pred HhccccccCCHHHHHHHHHH
Confidence 99999999999999998753
No 19
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.18 E-value=1.7e-10 Score=115.90 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=75.6
Q ss_pred cEEEEEe-cCCCCCCCCHHHHHHHHHHHHHHHhCC---------CcEEEEcCCCCChHHHHHHHHHHHhcC-CCHHHHHH
Q 020368 113 IDHLVIP-TRDYCFAPSLGDICRAVDFICENALSR---------QTTYVHCKAGRGRSTTVVICYLVHHKQ-MTPDAAYD 181 (327)
Q Consensus 113 I~yl~iP-i~D~~~~p~~~~~~~av~fI~~~~~~g---------~~VLVHC~aG~gRSgtvv~aYLm~~~g-~s~~eAl~ 181 (327)
+.++|+. ++|++.++....+..+++.++.....+ .+.+|||.+|+|||||++++++|...+ .++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 4455554 688886667677888888777653221 224799999999999999999997655 49999999
Q ss_pred HHHhhCCC-CcCCHHHHHHHHHHH-HHh
Q 020368 182 YVRSIRPR-VLLASAQWQAVLEYY-NLR 207 (327)
Q Consensus 182 ~Vr~~RP~-i~~n~~q~~~L~~f~-~l~ 207 (327)
.+|..|++ ++.+++|+.+|.+.. +++
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHHHHh
Confidence 99999998 999999999999888 443
No 20
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.16 E-value=1.9e-10 Score=107.02 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=71.0
Q ss_pred cEEEEEe-cCCCCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEcCCCCChHHHHHHHHHHHh-----cCCCHHHHHHHHHh
Q 020368 113 IDHLVIP-TRDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVICYLVHH-----KQMTPDAAYDYVRS 185 (327)
Q Consensus 113 I~yl~iP-i~D~~~~p~~~~~~~av~fI~~~~~~-g~~VLVHC~aG~gRSgtvv~aYLm~~-----~g~s~~eAl~~Vr~ 185 (327)
+.++++. ++|++.+.....+.+++..++..... ++||+|||.+|+||||++++++++.. ...++.+++..+|+
T Consensus 158 v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~ 237 (258)
T smart00194 158 VTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRS 237 (258)
T ss_pred EEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3444433 55665444667777777777765543 68999999999999999999988732 45799999999999
Q ss_pred hCCCCcCCHHHHHHHHH
Q 020368 186 IRPRVLLASAQWQAVLE 202 (327)
Q Consensus 186 ~RP~i~~n~~q~~~L~~ 202 (327)
+||.++.+..|+.++.+
T Consensus 238 ~R~~~v~~~~Qy~f~~~ 254 (258)
T smart00194 238 QRPGMVQTEEQYIFLYR 254 (258)
T ss_pred ccccccCCHHHHHHHHH
Confidence 99999999999999865
No 21
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.14 E-value=5.3e-10 Score=95.13 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=74.5
Q ss_pred cCCccEEEEecCCCCccC-Ccc-----cccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCCh
Q 020368 86 ELGVGGVITLNEPYETLV-PTS-----LYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGR 159 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~-~~~-----~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gR 159 (327)
++||++||||+.+.|... |.. .....|++|+++|+... .+..+.+..+.++++. ..+|||+||++|. |
T Consensus 25 ~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~~~~~---~~~pvL~HC~sG~-R 98 (135)
T TIGR01244 25 QLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRAAIGA---AEGPVLAYCRSGT-R 98 (135)
T ss_pred HCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHHHHHh---CCCCEEEEcCCCh-H
Confidence 589999999998766422 211 22357999999998864 3466677777777753 3589999999999 9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhhCCC
Q 020368 160 STTVVICYLVHHKQMTPDAAYDYVRSIRPR 189 (327)
Q Consensus 160 Sgtvv~aYLm~~~g~s~~eAl~~Vr~~RP~ 189 (327)
|+.+.+.++.. .|++.+++++..+..-..
T Consensus 99 t~~l~al~~~~-~g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 99 SSLLWGFRQAA-EGVPVEEIVRRAQAAGYD 127 (135)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHcCCC
Confidence 99998877766 899999999998776543
No 22
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.92 E-value=8.3e-09 Score=99.08 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=65.7
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHh------------CCCcEEEEcCCCCChHHHHHHHHHHHh-----cCCCHHHHHH
Q 020368 119 PTRDYCFAPSLGDICRAVDFICENAL------------SRQTTYVHCKAGRGRSTTVVICYLVHH-----KQMTPDAAYD 181 (327)
Q Consensus 119 Pi~D~~~~p~~~~~~~av~fI~~~~~------------~g~~VLVHC~aG~gRSgtvv~aYLm~~-----~g~s~~eAl~ 181 (327)
.++|++.+.....|.+++..+++... ..+||+|||.+|+|||||+++...+.. ...++.+++.
T Consensus 190 ~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~ 269 (303)
T PHA02742 190 DWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVR 269 (303)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 35677755566777777776665321 137999999999999999998766632 2458999999
Q ss_pred HHHhhCCCCcCCHHHHHHHHHH
Q 020368 182 YVRSIRPRVLLASAQWQAVLEY 203 (327)
Q Consensus 182 ~Vr~~RP~i~~n~~q~~~L~~f 203 (327)
.+|++|+.++.+..|+.++.+-
T Consensus 270 ~lR~qR~~~Vqt~~QY~F~y~~ 291 (303)
T PHA02742 270 DLRKQRHNCLSLPQQYIFCYFI 291 (303)
T ss_pred HHHhhcccccCCHHHHHHHHHH
Confidence 9999999999999999987643
No 23
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.92 E-value=2.9e-09 Score=106.54 Aligned_cols=117 Identities=23% Similarity=0.286 Sum_probs=94.3
Q ss_pred CccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCC--CcEEEEcCCCCChHHHHHH
Q 020368 88 GVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSR--QTTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 88 GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g--~~VLVHC~aG~gRSgtvv~ 165 (327)
|=-.|.||+.+ ..++...+.. +...+++.|+. +|.++.+..+++-++.++... ..|.|||++|.+|||+|++
T Consensus 53 ~~y~vyNL~~e--r~yd~~~f~g---~V~~~~~~Dh~-~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~ic 126 (434)
T KOG2283|consen 53 DHYKVYNLSSE--RLYDPSRFHG---RVARFGFDDHN-PPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMIC 126 (434)
T ss_pred CceEEEecCcc--ccCCcccccc---ceeecCCCCCC-CCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEe
Confidence 44459999973 4455554442 34458999985 999999999999999998874 6799999999999999999
Q ss_pred HHHHHhcCC-CHHHHHHHHHhhC---C--CCcCCHHHHHHHHHHHHHhhhc
Q 020368 166 CYLVHHKQM-TPDAAYDYVRSIR---P--RVLLASAQWQAVLEYYNLRVNM 210 (327)
Q Consensus 166 aYLm~~~g~-s~~eAl~~Vr~~R---P--~i~~n~~q~~~L~~f~~l~~~~ 210 (327)
||||+.... ++++|++++..+| . .....|.|.+.+..|..++...
T Consensus 127 A~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~l~~~ 177 (434)
T KOG2283|consen 127 AYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRVLLNG 177 (434)
T ss_pred HHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHHhhcC
Confidence 999996665 6999999999999 3 3566889999999998754433
No 24
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.92 E-value=2.6e-09 Score=104.89 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=102.2
Q ss_pred cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH----hCCCcEEEEcCCCCChHH
Q 020368 86 ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENA----LSRQTTYVHCKAGRGRST 161 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~----~~g~~VLVHC~aG~gRSg 161 (327)
..-|.-++||+.... +++...+...|+.|+.+.+..++..|.......++..+++.. ..++-|+|||.+|++|||
T Consensus 61 ~~~vgl~iDltnt~r-yy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nrtg 139 (393)
T KOG2386|consen 61 NYKVGLKIDLTNTLR-YYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTG 139 (393)
T ss_pred CceEEEEEeccceee-eeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccc
Confidence 447889999999864 456777888999999999999887777777666665555443 357899999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHH
Q 020368 162 TVVICYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQAVLEYYN 205 (327)
Q Consensus 162 tvv~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~ 205 (327)
.++++|||...+++..+|++.+...||..+.....+..|...+.
T Consensus 140 yLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~ 183 (393)
T KOG2386|consen 140 YLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYH 183 (393)
T ss_pred eeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccc
Confidence 99999999999999999999999999999999999999998884
No 25
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.91 E-value=9.6e-09 Score=98.51 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=64.9
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHH---------hCCCcEEEEcCCCCChHHHHHHHHHHH-----hcCCCHHHHHHHHH
Q 020368 119 PTRDYCFAPSLGDICRAVDFICENA---------LSRQTTYVHCKAGRGRSTTVVICYLVH-----HKQMTPDAAYDYVR 184 (327)
Q Consensus 119 Pi~D~~~~p~~~~~~~av~fI~~~~---------~~g~~VLVHC~aG~gRSgtvv~aYLm~-----~~g~s~~eAl~~Vr 184 (327)
.++|++.+.....|.+++..+++.. ...+|++|||.+|+||||++++...+. ....++.+++..+|
T Consensus 185 ~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR 264 (298)
T PHA02740 185 AWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVR 264 (298)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3567775656666766666555421 123799999999999999999876653 23459999999999
Q ss_pred hhCCCCcCCHHHHHHHHH
Q 020368 185 SIRPRVLLASAQWQAVLE 202 (327)
Q Consensus 185 ~~RP~i~~n~~q~~~L~~ 202 (327)
++|+.++.++.|+.++.+
T Consensus 265 ~qR~~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 265 QKKYGCMNCLDDYVFCYH 282 (298)
T ss_pred hhCccccCCHHHHHHHHH
Confidence 999999999999999865
No 26
>PLN02727 NAD kinase
Probab=98.91 E-value=4.9e-09 Score=111.55 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=69.9
Q ss_pred cCCccEEEEecCCCCccCC-----cccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChH
Q 020368 86 ELGVGGVITLNEPYETLVP-----TSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRS 160 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~-----~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRS 160 (327)
+.||++||||+.+.+...+ ....++.|++|+++|+.+. .+|..+++.++.+++++ ...+|||+||+.|..|+
T Consensus 279 ~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~--slpkPVLvHCKSGarRA 355 (986)
T PLN02727 279 EKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSD--SSKKPIYLHSKEGVWRT 355 (986)
T ss_pred HCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHh--hcCCCEEEECCCCCchH
Confidence 5799999999998763111 1134458999999999874 48899999999999955 33689999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 020368 161 TTVVICYLVHHKQM 174 (327)
Q Consensus 161 gtvv~aYLm~~~g~ 174 (327)
|+|++||+.+..+.
T Consensus 356 GamvA~yl~~~~~~ 369 (986)
T PLN02727 356 SAMVSRWKQYMTRS 369 (986)
T ss_pred HHHHHHHHHHHccc
Confidence 99999999976554
No 27
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.88 E-value=6.9e-09 Score=110.66 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=76.1
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEcCCCCChHHHHHHH----HHHHh-cCCCHHHHHHHHHhhCCCCcC
Q 020368 119 PTRDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVIC----YLVHH-KQMTPDAAYDYVRSIRPRVLL 192 (327)
Q Consensus 119 Pi~D~~~~p~~~~~~~av~fI~~~~~~-g~~VLVHC~aG~gRSgtvv~a----YLm~~-~g~s~~eAl~~Vr~~RP~i~~ 192 (327)
.++|++.+...++|..+++.|...+.. +-||+|||.||+||||+++++ ||+.+ ..+.+-+.+..+|.+|-.+++
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQ 1114 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQ 1114 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcc
Confidence 356888888889999999999888776 679999999999999999854 44433 456999999999999999999
Q ss_pred CHHHHHHHHHHH-HHhhhcc
Q 020368 193 ASAQWQAVLEYY-NLRVNMA 211 (327)
Q Consensus 193 n~~q~~~L~~f~-~l~~~~~ 211 (327)
+..|+.|+.+-- ..+.+..
T Consensus 1115 T~~QYkFVyevil~~l~~~~ 1134 (1144)
T KOG0792|consen 1115 TLSQYKFVYEVILRVLKRGR 1134 (1144)
T ss_pred chHHhhHHHHHHHHHHHhcc
Confidence 999999987655 4444433
No 28
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.85 E-value=1.8e-08 Score=97.65 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=68.0
Q ss_pred cEEEEE-ecCCCCCCCCHHHHHHHHHHHHHHHh-------C----CCcEEEEcCCCCChHHHHHHHHHHH-----hcCCC
Q 020368 113 IDHLVI-PTRDYCFAPSLGDICRAVDFICENAL-------S----RQTTYVHCKAGRGRSTTVVICYLVH-----HKQMT 175 (327)
Q Consensus 113 I~yl~i-Pi~D~~~~p~~~~~~~av~fI~~~~~-------~----g~~VLVHC~aG~gRSgtvv~aYLm~-----~~g~s 175 (327)
+.|+++ .++|++.+.....|.+++..+++... . .+|++|||.+|+||||++++...+. ...++
T Consensus 202 V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vd 281 (323)
T PHA02746 202 IHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVC 281 (323)
T ss_pred EEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCC
Confidence 344333 35677655556677777776665431 1 2699999999999999999865542 23469
Q ss_pred HHHHHHHHHhhCCCCcCCHHHHHHHHHH
Q 020368 176 PDAAYDYVRSIRPRVLLASAQWQAVLEY 203 (327)
Q Consensus 176 ~~eAl~~Vr~~RP~i~~n~~q~~~L~~f 203 (327)
+.+++..+|.+|+.++.+..|+.++.+-
T Consensus 282 v~~~V~~lR~qR~~~Vqt~~QY~F~y~~ 309 (323)
T PHA02746 282 LGEIVLKIRKQRHSSVFLPEQYAFCYKA 309 (323)
T ss_pred HHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 9999999999999999999999998754
No 29
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.85 E-value=1.9e-08 Score=96.99 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=63.5
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHhC-----------CCcEEEEcCCCCChHHHHHHHHHHH-----hcCCCHHHHHHH
Q 020368 119 PTRDYCFAPSLGDICRAVDFICENALS-----------RQTTYVHCKAGRGRSTTVVICYLVH-----HKQMTPDAAYDY 182 (327)
Q Consensus 119 Pi~D~~~~p~~~~~~~av~fI~~~~~~-----------g~~VLVHC~aG~gRSgtvv~aYLm~-----~~g~s~~eAl~~ 182 (327)
.++|++.+.....|.+++..++...+. .+|++|||.+|+||||++++..++. ....++.+++..
T Consensus 191 ~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~ 270 (312)
T PHA02747 191 EWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEK 270 (312)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 356766555566676666666543321 2699999999999999999876542 235699999999
Q ss_pred HHhhCCCCcCCHHHHHHH
Q 020368 183 VRSIRPRVLLASAQWQAV 200 (327)
Q Consensus 183 Vr~~RP~i~~n~~q~~~L 200 (327)
+|++|+.++.+..|+.++
T Consensus 271 lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 271 IREQRHAGIMNFDDYLFI 288 (312)
T ss_pred HHhccccccCCHHHHHHH
Confidence 999999999999999998
No 30
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.82 E-value=2.7e-08 Score=89.86 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=68.9
Q ss_pred EEEEE-ecCCCCCCCCHHHHHHHHHHHHHHH-hCCCcEEEEcCCCCChHHHHHHHHHHHh-----cCCCHHHHHHHHHhh
Q 020368 114 DHLVI-PTRDYCFAPSLGDICRAVDFICENA-LSRQTTYVHCKAGRGRSTTVVICYLVHH-----KQMTPDAAYDYVRSI 186 (327)
Q Consensus 114 ~yl~i-Pi~D~~~~p~~~~~~~av~fI~~~~-~~g~~VLVHC~aG~gRSgtvv~aYLm~~-----~g~s~~eAl~~Vr~~ 186 (327)
.++++ .+.|...++....+..+++.+.+.. ....|++|||..|.||||+++++.++.. ...++.+++..+|++
T Consensus 136 ~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~ 215 (235)
T PF00102_consen 136 THFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQ 215 (235)
T ss_dssp EEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTT
T ss_pred cceeeeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhh
Confidence 34443 3455443445666666666666655 3458999999999999999999888742 346999999999999
Q ss_pred CCCCcCCHHHHHHHHHH
Q 020368 187 RPRVLLASAQWQAVLEY 203 (327)
Q Consensus 187 RP~i~~n~~q~~~L~~f 203 (327)
||+++.+..|+.++...
T Consensus 216 R~~~i~~~~qy~f~~~~ 232 (235)
T PF00102_consen 216 RPGAIQSPEQYRFCYMA 232 (235)
T ss_dssp STTSSSSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHH
Confidence 99999999999998754
No 31
>PHA02738 hypothetical protein; Provisional
Probab=98.78 E-value=4.2e-08 Score=94.97 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=64.8
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHh--------------CCCcEEEEcCCCCChHHHHHHHHHHH-----hcCCCHHHH
Q 020368 119 PTRDYCFAPSLGDICRAVDFICENAL--------------SRQTTYVHCKAGRGRSTTVVICYLVH-----HKQMTPDAA 179 (327)
Q Consensus 119 Pi~D~~~~p~~~~~~~av~fI~~~~~--------------~g~~VLVHC~aG~gRSgtvv~aYLm~-----~~g~s~~eA 179 (327)
.++|++.+.....|.+++..+++... ..+||+|||.+|+||||++++...+. ....++.++
T Consensus 186 ~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~ 265 (320)
T PHA02738 186 AWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSI 265 (320)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHH
Confidence 35677655566677777666665321 13699999999999999998766542 234599999
Q ss_pred HHHHHhhCCCCcCCHHHHHHHHHH
Q 020368 180 YDYVRSIRPRVLLASAQWQAVLEY 203 (327)
Q Consensus 180 l~~Vr~~RP~i~~n~~q~~~L~~f 203 (327)
+..+|.+|+.++.+..|+.++.+-
T Consensus 266 V~~lR~qR~~~vqt~~QY~F~y~~ 289 (320)
T PHA02738 266 VSSIRNQRYYSLFIPFQYFFCYRA 289 (320)
T ss_pred HHHHHhhhhhccCCHHHHHHHHHH
Confidence 999999999999999999887643
No 32
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.77 E-value=1.1e-08 Score=88.47 Aligned_cols=63 Identities=30% Similarity=0.427 Sum_probs=49.2
Q ss_pred ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHH
Q 020368 106 SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVH 170 (327)
Q Consensus 106 ~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~aYLm~ 170 (327)
...+..|+.|++||+.|+. .|..+.|+++++|+... .++..+.+||.+|.|||+|+.++|.|.
T Consensus 86 ~~~~~~g~~Y~Ripitd~~-~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 86 ELVEGNGLRYYRIPITDHQ-APDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEEEeCCCcC-CCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3455789999999999975 99999999999999987 667889999999999999999988874
No 33
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.73 E-value=2e-08 Score=87.66 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=52.2
Q ss_pred hhhhhhhhcCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCC---C-------------------------H
Q 020368 78 RWWDRVDEELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAP---S-------------------------L 129 (327)
Q Consensus 78 ~~~~ri~~~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p---~-------------------------~ 129 (327)
..+..+. ++||++||||+.+.|....+... ..|++++++|+.+..... . .
T Consensus 33 ~d~~~L~-~lgI~tIiDLRs~~E~~~~p~~~-~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~ 110 (164)
T PF13350_consen 33 ADLERLR-ELGIRTIIDLRSPTERERAPDPL-IDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYA 110 (164)
T ss_dssp HHHHHHH-HTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTH
T ss_pred HHHHHHH-hCCCCEEEECCCccccccCCCCC-cCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhh
Confidence 3444555 79999999999988752222211 248999999987754321 0 0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHH
Q 020368 130 GDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDY 182 (327)
Q Consensus 130 ~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~s~~eAl~~ 182 (327)
+.+.++++.| ....++|||||++|+.|||.+++..|.. .|++.++.++.
T Consensus 111 ~~~~~~~~~l---~~~~~p~l~HC~aGKDRTG~~~alll~~-lGV~~~~I~~D 159 (164)
T PF13350_consen 111 EAYRKIFELL---ADAPGPVLFHCTAGKDRTGVVAALLLSL-LGVPDEDIIAD 159 (164)
T ss_dssp HHHHHHHHHH---H-TT--EEEE-SSSSSHHHHHHHHHHHH-TT--HHHHHHH
T ss_pred HHHHHHHHHh---ccCCCcEEEECCCCCccHHHHHHHHHHH-cCCCHHHHHHH
Confidence 1122222222 2234799999999999999998887655 89998887654
No 34
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.71 E-value=3.2e-08 Score=97.53 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=93.0
Q ss_pred hhcceeeecccchhhhhhccccccchhhhhhh--hcCCccEEEEecCCCCccCCc----------ccccccCcEEEEEec
Q 020368 53 GAGARALFYPTLLYNVVRNKFQAEFRWWDRVD--EELGVGGVITLNEPYETLVPT----------SLYHAHCIDHLVIPT 120 (327)
Q Consensus 53 ~~~~r~lf~P~l~~nvv~~~~~~~~~~~~ri~--~~~GI~~VVnL~~~~e~~~~~----------~~~~~~gI~yl~iPi 120 (327)
---+|++.-||--..--.++| .++|-... +++|+-.|=|+.+.....+.. ......-+.|+.+-+
T Consensus 346 QENsrVIVMtTkE~ERgK~KC---~~YWPee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tW 422 (600)
T KOG0790|consen 346 QENSRVIVMTTKEVERGKSKC---VKYWPEEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTW 422 (600)
T ss_pred hccceEEEEehhhhhcccccc---cccCCcccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeec
Confidence 334566666665444333343 23444222 267888888877753321110 011112245666667
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHh---CCCcEEEEcCCCCChHHHHHHHHHH----HhcC----CCHHHHHHHHHhhCCC
Q 020368 121 RDYCFAPSLGDICRAVDFICENAL---SRQTTYVHCKAGRGRSTTVVICYLV----HHKQ----MTPDAAYDYVRSIRPR 189 (327)
Q Consensus 121 ~D~~~~p~~~~~~~av~fI~~~~~---~g~~VLVHC~aG~gRSgtvv~aYLm----~~~g----~s~~eAl~~Vr~~RP~ 189 (327)
+|++.+..+--+..+++-++.... .-+||.|||.||+|||||+++.-++ +..| ++....+++||++|.+
T Consensus 423 PDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSG 502 (600)
T KOG0790|consen 423 PDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSG 502 (600)
T ss_pred ccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcc
Confidence 798865556666666666655322 2479999999999999997754333 3344 5888999999999999
Q ss_pred CcCCHHHHHHHH
Q 020368 190 VLLASAQWQAVL 201 (327)
Q Consensus 190 i~~n~~q~~~L~ 201 (327)
++.++.|++|+.
T Consensus 503 mVQTEaQYkFiY 514 (600)
T KOG0790|consen 503 MVQTEAQYKFIY 514 (600)
T ss_pred hhhhHHhHHHHH
Confidence 999999999985
No 35
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.65 E-value=6e-08 Score=79.98 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=46.7
Q ss_pred cCCccEEEEecCCCCccC-Cc-----ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCCh
Q 020368 86 ELGVGGVITLNEPYETLV-PT-----SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGR 159 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~-~~-----~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gR 159 (327)
+.|+++|||++.+.|... +. ...++.|+.|+++|+... .+..+++..+.+.++. ..+|||+||+.|. |
T Consensus 25 ~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~~~l~~---~~~Pvl~hC~sG~-R 98 (110)
T PF04273_consen 25 AQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFADALES---LPKPVLAHCRSGT-R 98 (110)
T ss_dssp HCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHHHHHHT---TTTSEEEE-SCSH-H
T ss_pred HCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHHHHHHh---CCCCEEEECCCCh-h
Confidence 589999999998866421 21 245679999999999863 5677888888777765 2479999999998 9
Q ss_pred HHHHHHH
Q 020368 160 STTVVIC 166 (327)
Q Consensus 160 Sgtvv~a 166 (327)
++++.++
T Consensus 99 a~~l~~l 105 (110)
T PF04273_consen 99 ASALWAL 105 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877554
No 36
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.52 E-value=1.2e-06 Score=80.59 Aligned_cols=124 Identities=17% Similarity=0.261 Sum_probs=87.2
Q ss_pred eeeecccchhhhhh-----ccccc--cchhhhhhhhcCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCC-----
Q 020368 57 RALFYPTLLYNVVR-----NKFQA--EFRWWDRVDEELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYC----- 124 (327)
Q Consensus 57 r~lf~P~l~~nvv~-----~~~~~--~~~~~~ri~~~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~----- 124 (327)
..-+.|++.|..+. .++|+ ++.+.. .++.+.||.|+.+........+++..+|++.+|-+....
T Consensus 51 ~~~lipPlnFs~V~~~lyRSg~P~~~NfsFL~----~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~ 126 (249)
T KOG1572|consen 51 EMVLIPPLNFSMVDNGLYRSGFPRPENFSFLK----TLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKE 126 (249)
T ss_pred CceecCCccccccccceeecCCCCccchHHHH----HhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccC
Confidence 34455666666554 44443 334444 379999999999853222223778899999999987643
Q ss_pred -CCCCH-HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 020368 125 -FAPSL-GDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIR 187 (327)
Q Consensus 125 -~~p~~-~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~s~~eAl~~Vr~~R 187 (327)
..+.. +.+.++++++-. ..+.|+||||..|..|+|+++.|.- +-++|++.-.++..++.-
T Consensus 127 P~~~~~~~~i~~~l~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 127 PFVNIPDHSIRKALKVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFA 188 (249)
T ss_pred CCCCChHHHHHHHHHHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhc
Confidence 12333 346677777543 4579999999999999999999977 668999988887765544
No 37
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.52 E-value=1.7e-07 Score=87.43 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=63.1
Q ss_pred cEEEEEe-cCCCCCCCCHHHHHHHHHHHHHHH---hCCCcEEEEcCCCCChHHHHHHHHHHHhcCC--------------
Q 020368 113 IDHLVIP-TRDYCFAPSLGDICRAVDFICENA---LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM-------------- 174 (327)
Q Consensus 113 I~yl~iP-i~D~~~~p~~~~~~~av~fI~~~~---~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~-------------- 174 (327)
|.|++++ +.|.. .|. +....++++... .+++|++|||.||+|||||+++.-.+...--
T Consensus 185 Ihhf~y~nW~D~~-~p~---i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D 260 (302)
T COG5599 185 IHHFQYINWVDFN-VPD---IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQD 260 (302)
T ss_pred EEEEEecCccccC-CcC---HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhh
Confidence 3344444 55654 553 444455555443 2568999999999999999998776653321
Q ss_pred CHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHh
Q 020368 175 TPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLR 207 (327)
Q Consensus 175 s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~l~ 207 (327)
...+.+..+|++|-.++.|..|+.+|..-...+
T Consensus 261 ~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l 293 (302)
T COG5599 261 LIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLEL 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 134567788999999999999999998776433
No 38
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.50 E-value=8.6e-07 Score=76.55 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=78.3
Q ss_pred cCCccEEEEecCCCCc-cCCccccccc--CcEEEEEecCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHH
Q 020368 86 ELGVGGVITLNEPYET-LVPTSLYHAH--CIDHLVIPTRDYC-FAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRST 161 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~-~~~~~~~~~~--gI~yl~iPi~D~~-~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSg 161 (327)
..|-+++|+|....+. ..+.....+. -+.+-.|-..|.+ ..|...++...++|++++- +-.++||||.+|+|||+
T Consensus 30 rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp-~~apllIHC~aGISRSt 108 (172)
T COG5350 30 RHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWP-RFAPLLIHCYAGISRST 108 (172)
T ss_pred hcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCc-cccceeeeeccccccch
Confidence 5689999999986432 1222211111 1222222333333 5778899999999999865 44789999999999998
Q ss_pred HHHH-HHHHHhcCCCHHHHHHHHHhhCCCCcCCHHHHH
Q 020368 162 TVVI-CYLVHHKQMTPDAAYDYVRSIRPRVLLASAQWQ 198 (327)
Q Consensus 162 tvv~-aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~~q~~ 198 (327)
+.+. +-|.....++..++.+.+|..+|.+.||+....
T Consensus 109 A~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 109 AAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred HHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 7653 334455789999999999999999999985543
No 39
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.24 E-value=7e-06 Score=79.72 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=66.2
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHhC-CCcEEEEcCCCCChHHHHHHHHHHHhc-----CCCHHHHHHHHHhhCCCC
Q 020368 117 VIPTRDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVICYLVHHK-----QMTPDAAYDYVRSIRPRV 190 (327)
Q Consensus 117 ~iPi~D~~~~p~~~~~~~av~fI~~~~~~-g~~VLVHC~aG~gRSgtvv~aYLm~~~-----g~s~~eAl~~Vr~~RP~i 190 (327)
..-++|++.+.....+.+++..+.+.... .++++|||.+|+|||||+++.--+.++ -.+....+-.+|..|+.+
T Consensus 257 y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~m 336 (374)
T KOG0791|consen 257 YTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLM 336 (374)
T ss_pred EeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccc
Confidence 34466877443445555666655555544 489999999999999999987665432 236777888889999999
Q ss_pred cCCHHHHHHHHHHHH
Q 020368 191 LLASAQWQAVLEYYN 205 (327)
Q Consensus 191 ~~n~~q~~~L~~f~~ 205 (327)
++|..|+-+|.+--.
T Consensus 337 Vqte~Qyvfl~~c~~ 351 (374)
T KOG0791|consen 337 VQTEDQYVFLHQCVL 351 (374)
T ss_pred cchHHHHHHHHHHHH
Confidence 999999999987763
No 40
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.18 E-value=5.8e-06 Score=77.44 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=40.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCcCCH
Q 020368 146 RQTTYVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIRPRVLLAS 194 (327)
Q Consensus 146 g~~VLVHC~aG~gRSgtvv~aYLm~~~g~s~~eAl~~Vr~~RP~i~~n~ 194 (327)
++|||+||++|..|||.++++|+....+..-..+-+++...++......
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 4899999999999999999999999666666677788877777655554
No 41
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.14 E-value=9.1e-06 Score=80.26 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=58.5
Q ss_pred ecCCCCCCCCHHHHHHHHHH-HHHHHhCCCcEEEEcCCCCChHHHHHHHHHH-Hh--c---CCCHHHHHHHHHhhCCCCc
Q 020368 119 PTRDYCFAPSLGDICRAVDF-ICENALSRQTTYVHCKAGRGRSTTVVICYLV-HH--K---QMTPDAAYDYVRSIRPRVL 191 (327)
Q Consensus 119 Pi~D~~~~p~~~~~~~av~f-I~~~~~~g~~VLVHC~aG~gRSgtvv~aYLm-~~--~---g~s~~eAl~~Vr~~RP~i~ 191 (327)
.++|++.+.....+..++.. ........+|+.|||.+|+|||||+++...+ .. . ..+..+.+..+|.+|+.++
T Consensus 271 ~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~v 350 (415)
T KOG0789|consen 271 NWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAV 350 (415)
T ss_pred CCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcc
Confidence 35566433334444444433 1222223589999999999999999975522 21 2 2358888999999999999
Q ss_pred CCHHHHHHHHHHH
Q 020368 192 LASAQWQAVLEYY 204 (327)
Q Consensus 192 ~n~~q~~~L~~f~ 204 (327)
.+..|+.++..-.
T Consensus 351 qt~~Qy~f~~~~~ 363 (415)
T KOG0789|consen 351 QSPLQYLFIYAAT 363 (415)
T ss_pred cchhHHHHHHHHH
Confidence 9999998887655
No 42
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=2.7e-05 Score=64.77 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=68.3
Q ss_pred cCCccEEEEecCCCCccCCc------ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCCh
Q 020368 86 ELGVGGVITLNEPYETLVPT------SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGR 159 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~------~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gR 159 (327)
.+|++.|||...+.|....+ ...+..|+.|.++|+... .....+++.+.+.|+++ ++|||.||+.|- |
T Consensus 26 a~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~Al~ea---egPVlayCrsGt-R 99 (130)
T COG3453 26 ALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQRALDEA---EGPVLAYCRSGT-R 99 (130)
T ss_pred HhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHHHHHHh---CCCEEeeecCCc-h
Confidence 57999999999988753222 245578999999999874 56667777777777663 589999999996 8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH
Q 020368 160 STTVVICYLVHHKQMTPDAAYDYVR 184 (327)
Q Consensus 160 Sgtvv~aYLm~~~g~s~~eAl~~Vr 184 (327)
|.++=..-. ...||+.+++.++=+
T Consensus 100 s~~ly~~~~-~~~gm~~de~~a~g~ 123 (130)
T COG3453 100 SLNLYGLGE-LDGGMSRDEIEALGQ 123 (130)
T ss_pred HHHHHHHHH-HhcCCCHHHHHHHHH
Confidence 866644333 457899988776644
No 43
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.71 E-value=6.9e-05 Score=77.79 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=65.1
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHHHh-CCCcEEEEcCCCCChHHHHHHHHHHHh---c---CCCHHHHHHHHHhh
Q 020368 114 DHLVIPTRDYCFAPSLGDICRAVDFICENAL-SRQTTYVHCKAGRGRSTTVVICYLVHH---K---QMTPDAAYDYVRSI 186 (327)
Q Consensus 114 ~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~-~g~~VLVHC~aG~gRSgtvv~aYLm~~---~---g~s~~eAl~~Vr~~ 186 (327)
+++.+.+.+.+.+-+...+.++-+.++++.. +..+|+|||..|-||||+.++.-++.. + .++....++++|.+
T Consensus 894 QFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 3444555676655556666666666666543 248999999999999999775544421 2 34888899999999
Q ss_pred CCCCcCCHHHHHHHHH
Q 020368 187 RPRVLLASAQWQAVLE 202 (327)
Q Consensus 187 RP~i~~n~~q~~~L~~ 202 (327)
||+++-+..|+++...
T Consensus 974 R~GmVaTkdQFef~l~ 989 (1004)
T KOG0793|consen 974 RPGMVATKDQFEFALT 989 (1004)
T ss_pred CCcceeehhhhHHHHH
Confidence 9999999999888753
No 44
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.59 E-value=8.6e-05 Score=80.61 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=57.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhC----CCcEEEEcCCCCChHHHHHHHHHH-----HhcCCCHHHHHHHHHhhCCCC
Q 020368 120 TRDYCFAPSLGDICRAVDFICENALS----RQTTYVHCKAGRGRSTTVVICYLV-----HHKQMTPDAAYDYVRSIRPRV 190 (327)
Q Consensus 120 i~D~~~~p~~~~~~~av~fI~~~~~~----g~~VLVHC~aG~gRSgtvv~aYLm-----~~~g~s~~eAl~~Vr~~RP~i 190 (327)
++|++.+-... ..+.|+++...- .+|++|||.+|.||||++++.=-| .....+...-+..+|.+|+.+
T Consensus 703 Wpd~gvPe~~t---~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 703 WPDHGVPETPT---GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred CCCCCCcccch---HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 66776443334 444555554433 389999999999999998743322 223447888889999999999
Q ss_pred cCCHHHHHHHHH
Q 020368 191 LLASAQWQAVLE 202 (327)
Q Consensus 191 ~~n~~q~~~L~~ 202 (327)
+.+.+|+-++.+
T Consensus 780 VQt~eQYiFi~~ 791 (1087)
T KOG4228|consen 780 VQTEEQYIFIHE 791 (1087)
T ss_pred cccHHHHHHHHH
Confidence 999999988653
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.37 E-value=0.00033 Score=76.24 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=62.4
Q ss_pred cEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhC--CCcEEEEcCCCCChHHHHHHHHHH----HhcC-CCHHHHHHHHHh
Q 020368 113 IDHLVIPTRDYCFAPSLGDICRAVDFICENALS--RQTTYVHCKAGRGRSTTVVICYLV----HHKQ-MTPDAAYDYVRS 185 (327)
Q Consensus 113 I~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~--g~~VLVHC~aG~gRSgtvv~aYLm----~~~g-~s~~eAl~~Vr~ 185 (327)
++|..+|..+. .+.....+...........+. .+|+.|||..|.||||+++++-++ ++.+ ++..++.+.+|.
T Consensus 984 fq~~~WP~~~~-~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~ 1062 (1087)
T KOG4228|consen 984 FQFTGWPEYGK-PPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRF 1062 (1087)
T ss_pred EEecCCcccCc-CCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhh
Confidence 44445555442 122333333333333333222 589999999999999999876554 3333 499999999999
Q ss_pred hCCCCcCCHHHHHHHHHHH
Q 020368 186 IRPRVLLASAQWQAVLEYY 204 (327)
Q Consensus 186 ~RP~i~~n~~q~~~L~~f~ 204 (327)
.||.++.+.+|++++.+-.
T Consensus 1063 ~rp~mv~t~~QY~fcYdv~ 1081 (1087)
T KOG4228|consen 1063 QRPGMVDTSDQYQFCYDVA 1081 (1087)
T ss_pred cCccccCcHHHHHHHHHHH
Confidence 9999999999999987644
No 46
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.16 E-value=0.0042 Score=63.00 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=84.3
Q ss_pred CCccEEEEecCCCCccCCcccccccCcEEEEEecCCCC--CCCCHHHHHHHHHHHHHHHhC--CCcEEEEcCCCCChHHH
Q 020368 87 LGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYC--FAPSLGDICRAVDFICENALS--RQTTYVHCKAGRGRSTT 162 (327)
Q Consensus 87 ~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~--~~p~~~~~~~av~fI~~~~~~--g~~VLVHC~aG~gRSgt 162 (327)
..+..||++.+..... . -......++++|+.... .-.+...+.+++.|+...+.+ +++++|+|..|...|..
T Consensus 317 ~~~~~vI~~s~~~~~~---~-~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVg 392 (451)
T PF04179_consen 317 SEFDCVINCSESPTPK---E-SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVG 392 (451)
T ss_pred CCcCEEEEcCCCcccc---c-ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHH
Confidence 4678899998864311 1 12345788899987653 123456788999999998888 89999999999999999
Q ss_pred HHHHHHHHhcCC----------------CHHHHHHHHHhhCCCCcCCHHHHHHHHHH
Q 020368 163 VVICYLVHHKQM----------------TPDAAYDYVRSIRPRVLLASAQWQAVLEY 203 (327)
Q Consensus 163 vv~aYLm~~~g~----------------s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f 203 (327)
++.|.|...+.. ...+-+.++.+.+|.+.|+.+..+++..|
T Consensus 393 VaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 393 VALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 999999876543 13345677777888888888888877766
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.05 E-value=0.018 Score=49.65 Aligned_cols=67 Identities=22% Similarity=0.348 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhC---CCcEEEEcCCCCCh----HHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Q 020368 121 RDYCFAPSLGDICRAVDFICENALS---RQTTYVHCKAGRGR----STTVVICYLVHHKQMTPDAAYDYVRSIRP 188 (327)
Q Consensus 121 ~D~~~~p~~~~~~~av~fI~~~~~~---g~~VLVHC~aG~gR----Sgtvv~aYLm~~~g~s~~eAl~~Vr~~RP 188 (327)
.|++ +..+.++-+++..+++.++. .++.+|||...-.+ ++.+++||+|.+.+||+++|++-+...-|
T Consensus 39 ~DFG-PlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFG-PLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCC-CccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 5665 77788888888888888876 57889999876654 67789999999999999999999977754
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.88 E-value=0.37 Score=50.19 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCChHHHHHH
Q 020368 134 RAVDFICENALSRQTTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 134 ~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~ 165 (327)
-++...++.-..+.+|||||.-|..||+-+++
T Consensus 362 ga~~Ia~kVe~~~~sVlVHCSDGWDRT~Qlvs 393 (717)
T KOG4471|consen 362 GAVRIADKVESESRSVLVHCSDGWDRTAQLVS 393 (717)
T ss_pred HHHHHHHHHhcCCceEEEEcCCCccchHHHHH
Confidence 34455555556679999999999999998774
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=81.99 E-value=3.1 Score=41.07 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=17.3
Q ss_pred hCCCcEEEEcCCCCChHHHHHH
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~ 165 (327)
.+|..|||||..|..||+-++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH
Confidence 4689999999999999977664
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=79.66 E-value=9.7 Score=29.71 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=19.0
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
.++++|+|+|..| .||... +.+| ...|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCC
Confidence 4568999999988 488654 3344 44555
No 51
>PRK01415 hypothetical protein; Validated
Probab=79.59 E-value=3.8 Score=38.56 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=19.6
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
.++++|+++|++|+ ||. .++.+|.. .|.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~-kAa~~L~~-~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCE-KSTSLLKS-IGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HHH-HHHHHHHH-cCC
Confidence 45789999999996 874 44555544 444
No 52
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=77.34 E-value=4.2 Score=42.54 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=24.2
Q ss_pred HHHHHHHHHHh-CCCcEEEEcCCCCChHHHHHH
Q 020368 134 RAVDFICENAL-SRQTTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 134 ~av~fI~~~~~-~g~~VLVHC~aG~gRSgtvv~ 165 (327)
+...+|.+++. +|-+|||||.-|..||.-|+.
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence 34445555565 468999999999999988874
No 53
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=77.29 E-value=4.4 Score=31.66 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCccEEEEecCCCCccCCcccccccCcE-EEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHH
Q 020368 87 LGVGGVITLNEPYETLVPTSLYHAHCID-HLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 87 ~GI~~VVnL~~~~e~~~~~~~~~~~gI~-yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~ 165 (327)
.+-..||+++++.+. .. .+-.. ..++|+.+.... ..... ..++++++|+|..|. ||. .++
T Consensus 18 ~~~~~liDvR~~~e~--~~----~~i~~~~~~ip~~~~~~~---------~~~~~--~~~~~~ivv~C~~G~-rS~-~aa 78 (110)
T COG0607 18 GEDAVLLDVREPEEY--ER----GHIPGAAINIPLSELKAA---------ENLLE--LPDDDPIVVYCASGV-RSA-AAA 78 (110)
T ss_pred cCCCEEEeccChhHh--hh----cCCCcceeeeecccchhh---------hcccc--cCCCCeEEEEeCCCC-ChH-HHH
Confidence 355679999987442 10 11122 556776664211 00000 556789999999997 884 444
Q ss_pred HHHHHhcCC
Q 020368 166 CYLVHHKQM 174 (327)
Q Consensus 166 aYLm~~~g~ 174 (327)
.+|.. .|.
T Consensus 79 ~~L~~-~G~ 86 (110)
T COG0607 79 AALKL-AGF 86 (110)
T ss_pred HHHHH-cCC
Confidence 44554 343
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=73.59 E-value=12 Score=36.20 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=62.2
Q ss_pred ceeeehhHHHhhhhccee-eecccchhhhhhccccccchhhhhhhhcCCccEEEEecCCCCccCCcccccccCcEEEEEe
Q 020368 41 SFVVSDVKRVLIGAGARA-LFYPTLLYNVVRNKFQAEFRWWDRVDEELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIP 119 (327)
Q Consensus 41 ~~~~~~~kr~~~~~~~r~-lf~P~l~~nvv~~~~~~~~~~~~ri~~~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iP 119 (327)
..+....|+..+..+--- ++-+...+..+ +...|+.+..+-+ +-|||.++.+|.... ++
T Consensus 86 ~r~kVk~kkEIV~lg~~ddv~p~~~vG~yl------~p~~wn~~l~D~~-~vviDtRN~YE~~iG------------~F- 145 (308)
T COG1054 86 WRLKVKLKKEIVALGVEDDVDPLENVGTYL------SPKDWNELLSDPD-VVVIDTRNDYEVAIG------------HF- 145 (308)
T ss_pred ceEEEeehhhheecCCCCCcCccccccCcc------CHHHHHHHhcCCC-eEEEEcCcceeEeee------------ee-
Confidence 445667777777655433 22223333333 3355665555445 788898888763111 11
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHh--CCCcEEEEcCCCCChHHHHHHHHHH
Q 020368 120 TRDYCFAPSLGDICRAVDFICENAL--SRQTTYVHCKAGRGRSTTVVICYLV 169 (327)
Q Consensus 120 i~D~~~~p~~~~~~~av~fI~~~~~--~g~~VLVHC~aG~gRSgtvv~aYLm 169 (327)
.....|....|.++-.++.+... ++++|..-|++|+ |.=- +.+||.
T Consensus 146 --~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RCEK-as~~m~ 193 (308)
T COG1054 146 --EGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI-RCEK-ASAWMK 193 (308)
T ss_pred --cCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-eehh-hHHHHH
Confidence 22345667778888888776544 4689999999999 7533 334444
No 55
>PLN02160 thiosulfate sulfurtransferase
Probab=72.69 E-value=5.5 Score=33.61 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=19.4
Q ss_pred HhCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 143 ALSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 143 ~~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
+..+.+|+|||..|. ||...+. .+...|.
T Consensus 78 ~~~~~~IivyC~sG~-RS~~Aa~--~L~~~G~ 106 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKATT--ELVAAGY 106 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHHHH--HHHHcCC
Confidence 346789999999994 8875532 3344555
No 56
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=61.23 E-value=20 Score=28.32 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 145 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
++.+|+|||..|. ||.. ++..| +..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 3578999999997 7743 33334 44565
No 57
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=58.87 E-value=21 Score=28.73 Aligned_cols=30 Identities=17% Similarity=-0.016 Sum_probs=20.0
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 175 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~s 175 (327)
..+.+|+|+|..| +++++.++.+| +..|++
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 4578999999998 55555555444 445653
No 58
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=58.07 E-value=42 Score=25.81 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=41.7
Q ss_pred CccEEEEecCCCCccCCcccccccCcEEEEEecCCC---CCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHH
Q 020368 88 GVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDY---CFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVV 164 (327)
Q Consensus 88 GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~---~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv 164 (327)
+=..|||++...+. ..... -.-+++|.... ........+............++..|+++|..|. |+...+
T Consensus 12 ~~~~liD~R~~~~~--~~~hI----~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~ 84 (113)
T PF00581_consen 12 ESVLLIDVRSPEEY--ERGHI----PGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAA 84 (113)
T ss_dssp TTEEEEEESSHHHH--HHSBE----TTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHH
T ss_pred CCeEEEEeCCHHHH--HcCCC----CCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhH
Confidence 34567888865431 11111 11256666332 2233344455555555554566788999997666 555555
Q ss_pred HH---HHHHhcCC
Q 020368 165 IC---YLVHHKQM 174 (327)
Q Consensus 165 ~a---YLm~~~g~ 174 (327)
.+ +.+...|.
T Consensus 85 ~~~~~~~l~~~g~ 97 (113)
T PF00581_consen 85 AARVAWILKKLGF 97 (113)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC
Confidence 44 33444454
No 59
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=55.23 E-value=26 Score=34.01 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 145 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
++++|+|+|..|+ ||.. ++.||.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHH-cCC
Confidence 5689999999996 8854 4555554 454
No 60
>PRK05320 rhodanese superfamily protein; Provisional
Probab=54.84 E-value=27 Score=32.86 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 145 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
++++|+++|..|+ ||.. ++.+|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCC
Confidence 5789999999996 7755 4555654 454
No 61
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=54.11 E-value=39 Score=29.34 Aligned_cols=29 Identities=10% Similarity=-0.162 Sum_probs=20.6
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
.++.+|+|.|..|..||.. +++++...|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 3568999999998878776 3445554554
No 62
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=51.45 E-value=17 Score=28.17 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=18.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 175 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~s 175 (327)
..+++|+|+|..|. ||..++ ..| ...|.+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa-~~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVA-ELL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHH-HHH-HHcCce
Confidence 45689999999995 775433 334 335553
No 63
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=47.91 E-value=42 Score=26.02 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=18.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhcCCC
Q 020368 145 SRQTTYVHCKAGRGRSTTVVICYLVHHKQMT 175 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~s 175 (327)
.+.+|+|+|..| .||... +.+|.+ .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 468999999998 477444 344443 5553
No 64
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=46.03 E-value=47 Score=27.25 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=20.7
Q ss_pred HhCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 143 ALSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 143 ~~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
+.++.+|+|.|..|-.||...+ ++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4557899999985545776444 66666665
No 65
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=44.99 E-value=27 Score=33.36 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=28.7
Q ss_pred ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcC
Q 020368 106 SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCK 154 (327)
Q Consensus 106 ~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~ 154 (327)
.+|++.|+.|+- |++.++ +++.++.++....-.+||+||..
T Consensus 229 ~lFe~LG~~Y~G-PiDGHd-------l~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYIG-PIDGHD-------LEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEEE-EEETT--------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEEe-ccCCCC-------HHHHHHHHHHHhcCCCCEEEEEe
Confidence 678899999985 777764 45555556555556799999963
No 66
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=43.22 E-value=40 Score=27.21 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=15.5
Q ss_pred hCCCcEEEEcCCCCChHHHHH
Q 020368 144 LSRQTTYVHCKAGRGRSTTVV 164 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv 164 (327)
....+|+|+|..|. ||...+
T Consensus 62 ~~~~~ivv~C~~G~-rs~~aa 81 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAAA 81 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHHH
Confidence 45789999999984 887653
No 67
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=41.56 E-value=88 Score=31.67 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=69.4
Q ss_pred cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHH------------HHHHHHHHHHHHhCC-CcEEEE
Q 020368 86 ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGD------------ICRAVDFICENALSR-QTTYVH 152 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~------------~~~av~fI~~~~~~g-~~VLVH 152 (327)
++|..+|.+|...... ...+..=++...+|+- +.|..+. -+.+++.|+++.++| --+-||
T Consensus 88 ~~GADtiMDLStGgdl----~~iR~~il~~s~vpvG---TVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTiH 160 (423)
T TIGR00190 88 KYGADTVMDLSTGGDL----DEIRKAILDAVPVPVG---TVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTIH 160 (423)
T ss_pred HcCCCeEeeccCCCCH----HHHHHHHHHcCCCCcc---CccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 7899999999986532 1111111111112211 1222221 346677788888888 678999
Q ss_pred cC-----------CC-----CChHHHHHHHHHHHhcCC-----CHHHHHHHHH----------hhCCCCcCC---HHHHH
Q 020368 153 CK-----------AG-----RGRSTTVVICYLVHHKQM-----TPDAAYDYVR----------SIRPRVLLA---SAQWQ 198 (327)
Q Consensus 153 C~-----------aG-----~gRSgtvv~aYLm~~~g~-----s~~eAl~~Vr----------~~RP~i~~n---~~q~~ 198 (327)
|. .| +||-|++.++|++.+..- .+++.++..+ ..||+.... ..|++
T Consensus 161 ~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~ 240 (423)
T TIGR00190 161 AGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQIS 240 (423)
T ss_pred cchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHH
Confidence 95 22 589999999999987554 2445555555 368877764 45666
Q ss_pred HHHHHHHHh
Q 020368 199 AVLEYYNLR 207 (327)
Q Consensus 199 ~L~~f~~l~ 207 (327)
.|....+|-
T Consensus 241 El~~lgeL~ 249 (423)
T TIGR00190 241 ELITLGELV 249 (423)
T ss_pred HHHHHHHHH
Confidence 666555443
No 68
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=41.04 E-value=43 Score=23.76 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHhh
Q 020368 162 TVVICYLVHHKQMTPDAAYDYVRSI 186 (327)
Q Consensus 162 tvv~aYLm~~~g~s~~eAl~~Vr~~ 186 (327)
.-+...||...|++.++|+++++..
T Consensus 16 ~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 16 EQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3456789999999999999999764
No 69
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=38.77 E-value=88 Score=31.77 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCC-CcEEEEcC----------------CCCChHHHHHHHHHHHhcCC-----CHHHHHHHHH------
Q 020368 133 CRAVDFICENALSR-QTTYVHCK----------------AGRGRSTTVVICYLVHHKQM-----TPDAAYDYVR------ 184 (327)
Q Consensus 133 ~~av~fI~~~~~~g-~~VLVHC~----------------aG~gRSgtvv~aYLm~~~g~-----s~~eAl~~Vr------ 184 (327)
+.+++.|+++.++| --+-|||. .=+||-|++.++|++.+..- .+++.++..+
T Consensus 143 d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtl 222 (431)
T PRK13352 143 DDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTL 222 (431)
T ss_pred HHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeee
Confidence 45677788888888 67899995 12689999999999986654 3445555555
Q ss_pred ----hhCCCCcCC---HHHHHHHHHHHHHh
Q 020368 185 ----SIRPRVLLA---SAQWQAVLEYYNLR 207 (327)
Q Consensus 185 ----~~RP~i~~n---~~q~~~L~~f~~l~ 207 (327)
..||+.... ..|++.|....+|-
T Consensus 223 SLGDglRPG~i~Da~D~aQi~El~~lgeL~ 252 (431)
T PRK13352 223 SLGDGLRPGCIADATDRAQIQELITLGELV 252 (431)
T ss_pred eccCCcCCCccccCCcHHHHHHHHHHHHHH
Confidence 358877654 46666666555443
No 70
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=38.55 E-value=1.2e+02 Score=30.55 Aligned_cols=116 Identities=15% Similarity=0.227 Sum_probs=69.9
Q ss_pred cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHHH------------HHHHHHHHHHHhCC-CcEEEE
Q 020368 86 ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDI------------CRAVDFICENALSR-QTTYVH 152 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~~------------~~av~fI~~~~~~g-~~VLVH 152 (327)
++|..+|.+|...... ...+..-++-..+|+- +.|..+.+ +.+.+.+.++.++| --+-||
T Consensus 89 ~~GADtvMDLStGgdl----~eiR~~ii~~s~vPvG---TVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfmTIH 161 (432)
T COG0422 89 KWGADTVMDLSTGGDL----HEIREWIIRNSPVPVG---TVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFMTIH 161 (432)
T ss_pred HhCcceeEecccCCCH----HHHHHHHHhcCCCCcC---CchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEEEee
Confidence 7899999999986431 1111111222223322 24444433 34556677777777 668899
Q ss_pred cC----------------CCCChHHHHHHHHHHHhcCC-----CHHHHHHHHH----------hhCCCCcCC---HHHHH
Q 020368 153 CK----------------AGRGRSTTVVICYLVHHKQM-----TPDAAYDYVR----------SIRPRVLLA---SAQWQ 198 (327)
Q Consensus 153 C~----------------aG~gRSgtvv~aYLm~~~g~-----s~~eAl~~Vr----------~~RP~i~~n---~~q~~ 198 (327)
|. .=+||-|+++++|++.+..- .+++.++.++ ..||+.+.. ..|+.
T Consensus 162 aGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~~ 241 (432)
T COG0422 162 AGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQFA 241 (432)
T ss_pred hhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHHH
Confidence 92 12689999999999986543 4556666665 358877764 35666
Q ss_pred HHHHHHHHhh
Q 020368 199 AVLEYYNLRV 208 (327)
Q Consensus 199 ~L~~f~~l~~ 208 (327)
.|....+|..
T Consensus 242 EL~tlgeL~k 251 (432)
T COG0422 242 ELITLGELTK 251 (432)
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 71
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=36.09 E-value=35 Score=32.22 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHH
Q 020368 154 KAGRGRSTTVVICYLVHHKQMTPDAAYDY 182 (327)
Q Consensus 154 ~aG~gRSgtvv~aYLm~~~g~s~~eAl~~ 182 (327)
--|+||||+.+.+-++. |++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 56999999999887774 8988888765
No 72
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=34.23 E-value=57 Score=28.16 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=32.2
Q ss_pred hcceeeecccchhhhhhccc--cccchhhhhhhhcCCccEEEEecCCCCcc
Q 020368 54 AGARALFYPTLLYNVVRNKF--QAEFRWWDRVDEELGVGGVITLNEPYETL 102 (327)
Q Consensus 54 ~~~r~lf~P~l~~nvv~~~~--~~~~~~~~ri~~~~GI~~VVnL~~~~e~~ 102 (327)
.-.|++++|.+.|..-...- .....-|..-..+.|++||+=++.+....
T Consensus 48 fKGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~Wk 98 (142)
T PF10673_consen 48 FKGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDSEWK 98 (142)
T ss_pred cCceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcccc
Confidence 44689999998877552211 11123455555578999999999986543
No 73
>smart00400 ZnF_CHCC zinc finger.
Probab=33.96 E-value=46 Score=23.42 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=23.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHH
Q 020368 150 YVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYV 183 (327)
Q Consensus 150 LVHC~aG~gRSgtvv~aYLm~~~g~s~~eAl~~V 183 (327)
..||.+ -|+.|-+ +-++|+..++++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 477874 4566655 5566777899999999875
No 74
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=33.77 E-value=72 Score=30.74 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.9
Q ss_pred cEEEEcCCCCChHHHHHH
Q 020368 148 TTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 148 ~VLVHC~aG~gRSgtvv~ 165 (327)
.|-|=|++|..||.+++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 588999999999999873
No 75
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=33.75 E-value=1.3e+02 Score=29.40 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCC-hHHHHHHHHHHHhcC----CCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhh
Q 020368 135 AVDFICENALSRQTTYVHCKAGRG-RSTTVVICYLVHHKQ----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVN 209 (327)
Q Consensus 135 av~fI~~~~~~g~~VLVHC~aG~g-RSgtvv~aYLm~~~g----~s~~eAl~~Vr~~RP~i~~n~~q~~~L~~f~~l~~~ 209 (327)
++.++-. ..|-+|+.|...|++ ++|+ +=++...| .+++++.+.+.+......+.+.|...+.....++..
T Consensus 90 ~~a~vlA--~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l~~lR~~ 164 (330)
T TIGR01245 90 ASAFVAA--AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHVAPVRRE 164 (330)
T ss_pred HHHHHHH--hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHHHHHHHH
Confidence 4455533 558999999998888 8775 23455555 478899999998887777777777777776655443
No 76
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=33.73 E-value=58 Score=24.91 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=17.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 145 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
++.+|+++|..|. ||.. ++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 3578999999986 7654 34444 44555
No 77
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=31.84 E-value=43 Score=32.03 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHH
Q 020368 155 AGRGRSTTVVICYLVHHKQMTPDAAYDY 182 (327)
Q Consensus 155 aG~gRSgtvv~aYLm~~~g~s~~eAl~~ 182 (327)
-|+||||+-+.+-|+. |++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 5999999988887774 9998888665
No 78
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=31.44 E-value=1.2e+02 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 146 RQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 146 g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
+..|+|+|..|-.||..++ +++...|+
T Consensus 74 ~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 4459999965556887664 34444565
No 79
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=30.31 E-value=48 Score=31.33 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHH
Q 020368 155 AGRGRSTTVVICYLVHHKQMTPDAAYDY 182 (327)
Q Consensus 155 aG~gRSgtvv~aYLm~~~g~s~~eAl~~ 182 (327)
-|+||||+.+.+-|+. |++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLFI--GLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 5999999988887774 8888888665
No 80
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=29.62 E-value=50 Score=31.43 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHH
Q 020368 155 AGRGRSTTVVICYLVHHKQMTPDAAYDY 182 (327)
Q Consensus 155 aG~gRSgtvv~aYLm~~~g~s~~eAl~~ 182 (327)
-|+||||+-+.+-++. |++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~~--G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLLL--GLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHHH
Confidence 5999999988887774 9998888665
No 81
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=28.94 E-value=1.9e+02 Score=29.43 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=64.8
Q ss_pred cCCccEEEEecCCCCccCC-cccccccCcEEEEEecCCC----CCCCCHHHHHHHHHHHHHHHhCC-CcEEEEcC-----
Q 020368 86 ELGVGGVITLNEPYETLVP-TSLYHAHCIDHLVIPTRDY----CFAPSLGDICRAVDFICENALSR-QTTYVHCK----- 154 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~-~~~~~~~gI~yl~iPi~D~----~~~p~~~~~~~av~fI~~~~~~g-~~VLVHC~----- 154 (327)
++|..+|.+|......... ....+...+..=.+|+.+- ...+..-.-+.+++.|+++.++| --+-|||.
T Consensus 87 ~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~~~ 166 (420)
T PF01964_consen 87 KAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITRET 166 (420)
T ss_dssp HTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--GGG
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhHHH
Confidence 7899999999986532100 1122222333334444221 11122223457888888888888 77899995
Q ss_pred -----------CCCChHHHHHHHHHHHhcCC-----CHHHHHHHHH----------hhCCCCcCC---HHHHHHHHHHHH
Q 020368 155 -----------AGRGRSTTVVICYLVHHKQM-----TPDAAYDYVR----------SIRPRVLLA---SAQWQAVLEYYN 205 (327)
Q Consensus 155 -----------aG~gRSgtvv~aYLm~~~g~-----s~~eAl~~Vr----------~~RP~i~~n---~~q~~~L~~f~~ 205 (327)
.=+||.|++++.|++.+..- .+++.++..| ..||+.... ..|+..|....+
T Consensus 167 ~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL~~lge 246 (420)
T PF01964_consen 167 LERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQELIILGE 246 (420)
T ss_dssp GGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHHHHHHH
T ss_pred HHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHHHHHHH
Confidence 12689999999999987655 3556666665 468877764 466666665554
Q ss_pred Hhh
Q 020368 206 LRV 208 (327)
Q Consensus 206 l~~ 208 (327)
|-.
T Consensus 247 L~~ 249 (420)
T PF01964_consen 247 LVK 249 (420)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 82
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=28.17 E-value=1e+02 Score=23.53 Aligned_cols=29 Identities=10% Similarity=-0.051 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 145 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
...+|+|+|..|...++..++..|. ..|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~-~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLS-ELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHH-HcCc
Confidence 3679999999986443444444443 3444
No 83
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=28.03 E-value=1e+02 Score=29.61 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.6
Q ss_pred cEEEEcCCCCChHHHHHH
Q 020368 148 TTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 148 ~VLVHC~aG~gRSgtvv~ 165 (327)
.|-|=|++|..||.+++=
T Consensus 247 ~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEEecCCCcccHHHHHH
Confidence 478899999999998873
No 84
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=27.79 E-value=62 Score=25.69 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=24.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 020368 150 YVHCKAGRGRSTTVVICYLVHHKQMTPDAAYDYVRSIR 187 (327)
Q Consensus 150 LVHC~aG~gRSgtvv~aYLm~~~g~s~~eAl~~Vr~~R 187 (327)
..||.+ -|.+|-+ +.++|.+.++++.+|++++.+.-
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHHh
Confidence 688984 6777766 55568889999999999987653
No 85
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=27.45 E-value=80 Score=24.10 Aligned_cols=28 Identities=7% Similarity=-0.152 Sum_probs=18.3
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
..+.+|+|+|..| +||..+ +.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH-HHcCC
Confidence 4568899999877 477554 4444 44554
No 86
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=27.42 E-value=60 Score=28.14 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcC
Q 020368 134 RAVDFICENALSRQTTYVHCK 154 (327)
Q Consensus 134 ~av~fI~~~~~~g~~VLVHC~ 154 (327)
.++.++.++...|++|+|+|.
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeC
Confidence 788999999999999999994
No 87
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=27.32 E-value=99 Score=26.08 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCC
Q 020368 132 ICRAVDFICENALSRQTTYVHCKA 155 (327)
Q Consensus 132 ~~~av~fI~~~~~~g~~VLVHC~a 155 (327)
...+++.++++.++|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 567788999999999999999943
No 88
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=27.16 E-value=3.6e+02 Score=28.60 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEcC--------------CCCChHHHHHHHHHHHhcCC-----CHHHHHHHHH-------
Q 020368 132 ICRAVDFICENALSR-QTTYVHCK--------------AGRGRSTTVVICYLVHHKQM-----TPDAAYDYVR------- 184 (327)
Q Consensus 132 ~~~av~fI~~~~~~g-~~VLVHC~--------------aG~gRSgtvv~aYLm~~~g~-----s~~eAl~~Vr------- 184 (327)
.+.+.+.|.++.++| --+-|||. .=+||-|++++.|++.+..- .+++.++.++
T Consensus 294 ~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~R~tgIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~YDVtlS 373 (607)
T PRK09284 294 WEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAAYDVSFS 373 (607)
T ss_pred HHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCcccCcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHhCeeee
Confidence 345666777777777 67889995 22689999999999987654 3556666665
Q ss_pred ---hhCCCCcCC---HHHHHHHHHHHHHh
Q 020368 185 ---SIRPRVLLA---SAQWQAVLEYYNLR 207 (327)
Q Consensus 185 ---~~RP~i~~n---~~q~~~L~~f~~l~ 207 (327)
..||+.+-. ..|+..|....+|.
T Consensus 374 LGDGLRPG~iaDA~D~AQ~~EL~tLGELt 402 (607)
T PRK09284 374 LGDGLRPGSIADANDEAQFAELETLGELT 402 (607)
T ss_pred ccCCcCCCccccCCcHHHHHHHHHHHHHH
Confidence 358877653 46666666555443
No 89
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=26.98 E-value=79 Score=33.62 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=33.0
Q ss_pred CcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCCh
Q 020368 104 PTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGR 159 (327)
Q Consensus 104 ~~~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gR 159 (327)
+..+|++.|+.|+. |++.++ +++.+..+.+.....+||+||...=+|+
T Consensus 235 ~~~lFeelGf~YiG-PiDGHn-------i~~Li~~Lk~~kd~~gPvllHv~T~KGK 282 (627)
T COG1154 235 PGTLFEELGFNYIG-PIDGHN-------LEELIPTLKNAKDLKGPVLLHVVTKKGK 282 (627)
T ss_pred chhhHHHhCCeeEC-CcCCCC-------HHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 44578899999984 776654 4455555555566678999999654443
No 90
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=26.97 E-value=81 Score=33.52 Aligned_cols=47 Identities=9% Similarity=0.270 Sum_probs=29.6
Q ss_pred ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCChH
Q 020368 106 SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRS 160 (327)
Q Consensus 106 ~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRS 160 (327)
..|++.|+.|.. |++.++ .+.+.++++ .+...++|++|||+.=+|+-
T Consensus 232 ~~f~~~G~~~~~-~vDGhd----~~~l~~al~---~ak~~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 232 TFFEELGFNYIG-PVDGHD----LLELIETLK---NAKKLKGPVFLHIQTKKGKG 278 (617)
T ss_pred chHHHcCCcEEc-ccCCCC----HHHHHHHHH---HHhcCCCCEEEEEEecCCCC
Confidence 358889998886 775543 444445444 33344579999996544443
No 91
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=26.95 E-value=88 Score=24.09 Aligned_cols=26 Identities=0% Similarity=0.041 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 146 RQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 146 g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
+.+|+|+|..|. ||..++. .+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~--~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA--FLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH--HHHHcCC
Confidence 678999999986 7655433 3344554
No 92
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=26.36 E-value=80 Score=24.09 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=18.0
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
....+|+|+|..| .||.. + +.++...|.
T Consensus 59 ~~~~~ivv~c~~g-~~s~~-~-~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL-A-GKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH-H-HHHHHHcCh
Confidence 4568999999887 47643 2 344444553
No 93
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.01 E-value=1.7e+02 Score=26.43 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHH
Q 020368 129 LGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLV 169 (327)
Q Consensus 129 ~~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~aYLm 169 (327)
.+.+.++++.|.+.+.++++|++- |.|+|+.++..+-+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 366889999999999999999884 88899887755444
No 94
>PLN02444 HMP-P synthase
Probab=25.22 E-value=2.1e+02 Score=30.34 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=69.2
Q ss_pred cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCCCCCHHH------------HHHHHHHHHHHHhCC-CcEEEE
Q 020368 86 ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGD------------ICRAVDFICENALSR-QTTYVH 152 (327)
Q Consensus 86 ~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~~p~~~~------------~~~av~fI~~~~~~g-~~VLVH 152 (327)
++|..+|.+|...... ...++.-++...+|+ ++.|+.+. .+.+.+.|.++.++| --+-||
T Consensus 248 ~~GADTvMDLSTGgdi----~~iR~~Il~~spvPV---GTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVDfmTIH 320 (642)
T PLN02444 248 MWGADTVMDLSTGRHI----HETREWILRNSPVPV---GTVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVDYFTIH 320 (642)
T ss_pred HcCCCeEeeccCCCCH----HHHHHHHHHcCCCCc---cCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 7899999999986431 001111111111221 12333222 345666777777777 678999
Q ss_pred cC--------------CCCChHHHHHHHHHHHhcCC-----CHHHHHHHHHh----------hCCCCcCC---HHHHHHH
Q 020368 153 CK--------------AGRGRSTTVVICYLVHHKQM-----TPDAAYDYVRS----------IRPRVLLA---SAQWQAV 200 (327)
Q Consensus 153 C~--------------aG~gRSgtvv~aYLm~~~g~-----s~~eAl~~Vr~----------~RP~i~~n---~~q~~~L 200 (327)
|. .=+||-|++.+.|++.+..- .+++.++.+++ .||+.+-. ..|+..|
T Consensus 321 ~Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL 400 (642)
T PLN02444 321 AGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDIALSIGDGLRPGSIYDANDTAQFAEL 400 (642)
T ss_pred hhhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHH
Confidence 95 22589999999999986654 35566666653 58877653 4666666
Q ss_pred HHHHHHh
Q 020368 201 LEYYNLR 207 (327)
Q Consensus 201 ~~f~~l~ 207 (327)
...-+|-
T Consensus 401 ~tLGELt 407 (642)
T PLN02444 401 LTQGELT 407 (642)
T ss_pred HHHHHHH
Confidence 6555443
No 95
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=25.19 E-value=34 Score=27.47 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=8.7
Q ss_pred CcEEEEcCCC
Q 020368 147 QTTYVHCKAG 156 (327)
Q Consensus 147 ~~VLVHC~aG 156 (327)
.++||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5899999877
No 96
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=24.82 E-value=54 Score=30.88 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=17.4
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
..+++|+++|..|+ |++. +..+| ...|.
T Consensus 229 ~~~~~ii~yC~~G~-~A~~-~~~~l-~~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAAV-VVLAL-ATLDV 256 (281)
T ss_pred CCCCCEEEECCcHH-HHHH-HHHHH-HHcCC
Confidence 45679999999887 5543 33333 34454
No 97
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=24.53 E-value=1e+02 Score=23.65 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 145 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
++.+|+|+|..|. ||..+ ++++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~~--~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKAA--AELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHHH--HHHHHHcCC
Confidence 4689999999986 66443 344454564
No 98
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.43 E-value=61 Score=30.35 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=42.4
Q ss_pred chhhhhhhh---cCCccEEEEecCCCCccCCcccccccCcEEEEEecCCCCC-------------------CCCHHHHHH
Q 020368 77 FRWWDRVDE---ELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCF-------------------APSLGDICR 134 (327)
Q Consensus 77 ~~~~~ri~~---~~GI~~VVnL~~~~e~~~~~~~~~~~gI~yl~iPi~D~~~-------------------~p~~~~~~~ 134 (327)
..||.++.+ +.||.-+.+.-.. ....+..+.++..+.|+-.|-.. .-..+++++
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~----~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~ 130 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDE----ESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIER 130 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SH----HHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCH----HHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHH
Confidence 466666655 7898887776553 12334456677777777655432 235667788
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCC
Q 020368 135 AVDFICENALSRQTTYVHCKAGR 157 (327)
Q Consensus 135 av~fI~~~~~~g~~VLVHC~aG~ 157 (327)
+++++.+. ....-+|.||..+.
T Consensus 131 Av~~~~~~-~~~~l~llHC~s~Y 152 (241)
T PF03102_consen 131 AVEVLREA-GNEDLVLLHCVSSY 152 (241)
T ss_dssp HHHHHHHH-CT--EEEEEE-SSS
T ss_pred HHHHHHhc-CCCCEEEEecCCCC
Confidence 88888543 23467899997763
No 99
>PRK07411 hypothetical protein; Validated
Probab=24.35 E-value=78 Score=31.55 Aligned_cols=27 Identities=22% Similarity=0.492 Sum_probs=18.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 145 SRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
++.+|+|||..|. ||.. ++. .++..|.
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~-~L~~~G~ 367 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALG-ILKEAGI 367 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHH-HHHHcCC
Confidence 4678999999886 8855 333 3344665
No 100
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=24.27 E-value=64 Score=25.53 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCChHHHHH
Q 020368 147 QTTYVHCKAGRGRSTTVV 164 (327)
Q Consensus 147 ~~VLVHC~aG~gRSgtvv 164 (327)
.+||+-|.+|++ |+.++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 579999999998 55544
No 101
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=24.17 E-value=1.2e+02 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=17.4
Q ss_pred HhCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 143 ALSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 143 ~~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
...+.+++|+|..|. ||..+ + ..++..|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~a-~-~~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQL-A-QALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHHH-H-HHHHHcCC
Confidence 346789999999664 54443 3 33333454
No 102
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=24.05 E-value=1e+02 Score=26.24 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcCC
Q 020368 131 DICRAVDFICENALSRQTTYVHCKA 155 (327)
Q Consensus 131 ~~~~av~fI~~~~~~g~~VLVHC~a 155 (327)
...-+++.+.++..+|.+|+|+|..
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4566888899999999999999943
No 103
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=24.02 E-value=1.8e+02 Score=23.00 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCChHHHHH
Q 020368 146 RQTTYVHCKAGRGRSTTVV 164 (327)
Q Consensus 146 g~~VLVHC~aG~gRSgtvv 164 (327)
..+|++||..|-.||...+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4789999998666776543
No 104
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=23.91 E-value=1.4e+02 Score=27.25 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCCCCChHHHHHHHHHHHh
Q 020368 130 GDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLVHH 171 (327)
Q Consensus 130 ~~~~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvv~aYLm~~ 171 (327)
+.|.++++.|-++ .++|+| .|+||||.++=++-|+-
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V---~G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFV---TGVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEE---EcCChhHHHHHHHHHHH
Confidence 4566666666543 467887 59999999997777753
No 105
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=23.68 E-value=89 Score=25.23 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=18.3
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
..+++++|+|..|. ||...+ .+ ++..|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~~-L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-RK-LKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-HH-HHHcCC
Confidence 45689999999995 875333 33 343555
No 106
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=23.51 E-value=1.7e+02 Score=23.09 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHH
Q 020368 145 SRQTTYVHCKAGRGRSTTVVIC 166 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv~a 166 (327)
...+|+|||..+-.|+...+-.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~ 82 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARK 82 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHH
Confidence 3578999998544577665433
No 107
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=23.31 E-value=2.7e+02 Score=22.60 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=25.6
Q ss_pred hhhcCCccEEEEecCCCCcc---CC----cccccccCcEEEEEecC
Q 020368 83 VDEELGVGGVITLNEPYETL---VP----TSLYHAHCIDHLVIPTR 121 (327)
Q Consensus 83 i~~~~GI~~VVnL~~~~e~~---~~----~~~~~~~gI~yl~iPi~ 121 (327)
..++.||+.|||+..-.... +. .......||.|.++|-.
T Consensus 8 ~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 8 LLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 34468999999987753311 11 12344689999999853
No 108
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=23.30 E-value=1.1e+02 Score=33.33 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=30.3
Q ss_pred ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCC--CcEEEEcCCCCCh
Q 020368 106 SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSR--QTTYVHCKAGRGR 159 (327)
Q Consensus 106 ~~~~~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g--~~VLVHC~aG~gR 159 (327)
.+|++.|+.|+- |++.++ .+.+.++++.+ .... +||+||-..-+|+
T Consensus 320 ~lFe~lG~~Y~G-pvDGHd----i~~Li~~l~~~---k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYIG-PVDGHN----IEDLVCVLREV---SSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEEC-ccCCCC----HHHHHHHHHHH---HcCCCCCCEEEEEEecCCC
Confidence 578899999984 777654 34444444444 3343 8999998655554
No 109
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=22.47 E-value=1.4e+02 Score=28.66 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.6
Q ss_pred cEEEEcCCCCChHHHHHH
Q 020368 148 TTYVHCKAGRGRSTTVVI 165 (327)
Q Consensus 148 ~VLVHC~aG~gRSgtvv~ 165 (327)
.|-|=|++|..||.+++=
T Consensus 245 TIaIGCTGGqHRSV~iae 262 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred EEEEccCCCccchHHHHH
Confidence 477899999999999873
No 110
>PRK05569 flavodoxin; Provisional
Probab=22.37 E-value=2.6e+02 Score=22.92 Aligned_cols=89 Identities=6% Similarity=-0.105 Sum_probs=51.1
Q ss_pred ccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCC-hHHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Q 020368 110 AHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRG-RSTTVVICYLVHHKQMTPDAAYDYVRSIRP 188 (327)
Q Consensus 110 ~~gI~yl~iPi~D~~~~p~~~~~~~av~fI~~~~~~g~~VLVHC~aG~g-RSgtvv~aYLm~~~g~s~~eAl~~Vr~~RP 188 (327)
....-.+-.|+.... ......+..+++.+.....+|+++.+-+..|.+ ..+.-.+.-++...|+..-..+ .-
T Consensus 48 ~~d~iilgsPty~~~-~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~------~~ 120 (141)
T PRK05569 48 EADAVAFGSPSMDNN-NIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDL------AV 120 (141)
T ss_pred hCCEEEEECCCcCCC-cCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeE------EE
Confidence 344556666776643 222345666666665433468899999999876 2322223334444565443221 11
Q ss_pred CCcCCHHHHHHHHHHHH
Q 020368 189 RVLLASAQWQAVLEYYN 205 (327)
Q Consensus 189 ~i~~n~~q~~~L~~f~~ 205 (327)
...|+..-.+++++|.+
T Consensus 121 ~~~p~~~~~~~~~~~g~ 137 (141)
T PRK05569 121 NESPNKEELNSAKELGK 137 (141)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 23478888888888874
No 111
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=22.04 E-value=1.1e+02 Score=23.36 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=13.6
Q ss_pred hCCCcEEEEcCCCCChHHH
Q 020368 144 LSRQTTYVHCKAGRGRSTT 162 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgt 162 (327)
..+.+|+|+|..|. ||..
T Consensus 52 ~~~~~iv~~c~~g~-~s~~ 69 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ 69 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH
Confidence 45689999999985 5553
No 112
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=21.36 E-value=1e+02 Score=25.11 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=16.5
Q ss_pred hCCCcEEEEcC-CCCChHHHHHHHHHHH
Q 020368 144 LSRQTTYVHCK-AGRGRSTTVVICYLVH 170 (327)
Q Consensus 144 ~~g~~VLVHC~-aG~gRSgtvv~aYLm~ 170 (327)
.+..+|+|||. +| .||+.+ +.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~a-a~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPRM-ARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHHH-HHHHHH
Confidence 45689999997 55 577554 334443
No 113
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=21.02 E-value=1.6e+02 Score=23.56 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=13.8
Q ss_pred CCCcEEEEcCCCCChHHHHH
Q 020368 145 SRQTTYVHCKAGRGRSTTVV 164 (327)
Q Consensus 145 ~g~~VLVHC~aG~gRSgtvv 164 (327)
.+.+++|+|..| .||...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 356899999988 4665554
No 114
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=20.48 E-value=2.1e+02 Score=22.46 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=18.5
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHhcCC
Q 020368 144 LSRQTTYVHCKAGRGRSTTVVICYLVHHKQM 174 (327)
Q Consensus 144 ~~g~~VLVHC~aG~gRSgtvv~aYLm~~~g~ 174 (327)
..+.+|+|+|..|. ||..+ ++.+...|.
T Consensus 76 ~~~~~iv~yc~~g~-~s~~~--~~~l~~~G~ 103 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACVL--LLALELLGY 103 (118)
T ss_pred CCCCCEEEECCcHH-HHHHH--HHHHHHcCC
Confidence 35689999999875 66543 344454555
No 115
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.19 E-value=1e+02 Score=23.57 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=11.9
Q ss_pred CcEEEEcCCCCChHH
Q 020368 147 QTTYVHCKAGRGRST 161 (327)
Q Consensus 147 ~~VLVHC~aG~gRSg 161 (327)
++|++.|.+|+|=|.
T Consensus 1 ~kilvvCg~G~gtS~ 15 (87)
T cd05567 1 KKIVFACDAGMGSSA 15 (87)
T ss_pred CEEEEECCCCccHHH
Confidence 369999999997543
No 116
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.05 E-value=2.1e+02 Score=28.57 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=11.8
Q ss_pred HhCCCcEEEEcCCCC
Q 020368 143 ALSRQTTYVHCKAGR 157 (327)
Q Consensus 143 ~~~g~~VLVHC~aG~ 157 (327)
+..|..||.||.+|-
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 345778999999874
No 117
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=20.01 E-value=1.3e+02 Score=26.10 Aligned_cols=26 Identities=8% Similarity=-0.133 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEcCC
Q 020368 130 GDICRAVDFICENALSRQTTYVHCKA 155 (327)
Q Consensus 130 ~~~~~av~fI~~~~~~g~~VLVHC~a 155 (327)
.....++++++++..+|.+|+|+|..
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d 38 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTAD 38 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 34567788889999999999999954
Done!