Query 020370
Match_columns 327
No_of_seqs 303 out of 1214
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2997 F-box protein FBX9 [Ge 100.0 6.2E-66 1.3E-70 488.2 13.6 290 6-315 45-366 (366)
2 PF12937 F-box-like: F-box-lik 99.3 1.3E-12 2.8E-17 92.0 3.7 46 61-106 2-47 (47)
3 PF00646 F-box: F-box domain; 98.8 3.9E-09 8.4E-14 73.9 2.8 46 60-105 3-48 (48)
4 smart00256 FBOX A Receptor for 98.7 2.2E-08 4.7E-13 67.1 3.5 40 63-102 1-40 (41)
5 KOG3926 F-box proteins [Amino 98.1 1.6E-06 3.6E-11 82.2 3.6 105 57-164 199-309 (332)
6 KOG2120 SCF ubiquitin ligase, 97.8 9.6E-06 2.1E-10 78.7 2.1 51 56-106 94-144 (419)
7 KOG0281 Beta-TrCP (transducin 97.0 0.00064 1.4E-08 67.0 3.8 47 60-106 75-125 (499)
8 PF06881 Elongin_A: RNA polyme 96.6 0.0024 5.3E-08 52.8 4.1 69 60-135 4-72 (109)
9 KOG0274 Cdc4 and related F-box 95.9 0.0037 7.9E-08 65.2 1.7 48 60-107 108-155 (537)
10 KOG4341 F-box protein containi 95.8 0.0039 8.5E-08 63.0 1.6 51 60-110 72-122 (483)
11 KOG4408 Putative Mg2+ and Co2+ 94.7 0.0045 9.7E-08 60.8 -1.9 55 58-112 6-60 (386)
12 PF13013 F-box-like_2: F-box-l 88.6 0.52 1.1E-05 39.5 3.5 34 59-92 21-54 (109)
13 PLN03215 ascorbic acid mannose 87.1 0.51 1.1E-05 47.4 3.1 37 60-96 4-41 (373)
14 KOG2997 F-box protein FBX9 [Ge 67.1 6.9 0.00015 38.8 3.9 30 77-107 148-187 (366)
15 PF09372 PRANC: PRANC domain; 52.7 11 0.00024 30.0 2.3 24 60-83 72-95 (97)
16 PHA02123 hypothetical protein 38.9 23 0.00049 30.0 2.1 43 135-188 95-139 (146)
17 PF13924 Lipocalin_5: Lipocali 36.4 2.7E+02 0.0058 23.6 10.3 57 161-223 25-89 (140)
18 PHA03100 ankyrin repeat protei 26.9 43 0.00093 33.4 2.2 29 60-88 448-476 (480)
19 PF11794 HpaB_N: 4-hydroxyphen 25.4 32 0.00069 33.1 0.9 13 233-245 206-218 (264)
20 TIGR03067 Planc_TIGR03067 Plan 22.6 3.8E+02 0.0082 21.9 6.7 67 166-233 34-106 (107)
No 1
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=100.00 E-value=6.2e-66 Score=488.19 Aligned_cols=290 Identities=34% Similarity=0.541 Sum_probs=264.0
Q ss_pred cccccccchhhhc-cccccceecccccccccCCccccCCC---CCCCCC-CCCCC--cchhc-ccCCHHHHHHHhc----
Q 020370 6 AMTIPAELESSLR-LKTVHHFVTQRPWLDLYGINVRPVAP---FGSVSR-KPYVD--TALIH-RCLPDELLFEVFA---- 73 (327)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~r~~L~~~gl~i~~~~p---~~~~s~-~~~~~--pc~iL-~~LP~EILl~Ils---- 73 (327)
|++|+|++|+.-+ +++++++.++++||++.+-..+++++ |+.... ++.++ ||+++ ..||+|||+.||.
T Consensus 45 AlqI~~diEs~~r~l~~~~~~~~k~~~l~l~~D~~~~~~~~s~f~~tLt~qe~v~~qp~~~~~~~LPdEvLm~I~~~vv~ 124 (366)
T KOG2997|consen 45 ALQIVPDIESKYRYLRSPQGDGVKNSYLELNDDASKMADLLSYFQQTLTFQESVLCQPELISISVLPDEVLMRIFRWVVS 124 (366)
T ss_pred hhcCCchHHHHHHHHhhhhhcccCcchhhccccchhhcCchhccccccccccccccchhhhhhhhCCHHHHHHHHHHHHh
Confidence 8999999999988 99999999999999999999999998 766655 55555 99987 8999999999995
Q ss_pred -CCChhhhHhHhhhcHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhCCccccCcEEEeccceec
Q 020370 74 -RMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIR 152 (327)
Q Consensus 74 -~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~w~~~~~~~~~~l~~~~~~~sWR~Mf~~RPrIRf~G~YIS~~~YiR 152 (327)
.||.+||.++|+|||+|+.+|+++.+||..|.+.|+......+.++..+.+.++||+||++|||+||||||||+++|+|
T Consensus 125 ~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~RpRvrFdG~YIS~~tYiR 204 (366)
T KOG2997|consen 125 SLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLERPRVRFDGVYISKTTYIR 204 (366)
T ss_pred hhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhhCcceeecceEEEEEeEee
Confidence 6799999999999999999999999999999999999777666666667888999999999999999999999999999
Q ss_pred CCcccc-cccCceeEEEeeeeeeecCCCceEEeecccchhhhcccccccccCCCceEEEEEEEeCCEEEEEEecCCC---
Q 020370 153 AGVAEW-KITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGL--- 228 (327)
Q Consensus 153 ~G~~~~-~~~~Pvh~VtYYRYlRF~pDG~~l~lls~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~~~~~~~--- 228 (327)
+|++++ +|++|||+||||||+||||||+||+++|++||++||++|+.++.+...++.|+|+++++.|++++..++.
T Consensus 205 ~G~~~~~~~~~PVHlV~YYRYiRFyP~G~~l~~~SsdEP~dvVk~~s~~Nt~~~s~~~g~y~ls~~dv~~al~~~~~~~p 284 (366)
T KOG2997|consen 205 QGENSLDSFYRPVHLVEYYRYIRFYPDGHVLMLTSSDEPQDVVKRLSTRNTRRDSILLGHYRLSQSDVFAALTKSKERTP 284 (366)
T ss_pred cCchhhhhhcCcceeeEEEEEEEecCCCcEEEEeCCcChHHHHHhhhhccCcchhhhcccccccCCchhhhhccCcccCc
Confidence 999999 9999999999999999999999999999999999999999999988999999999999888877763221
Q ss_pred ---------------CceEEEEEEEEecCCCCCcceeEEeEeEeecCCCCCCCCCCCcccccccccccCCCCCCCCCccc
Q 020370 229 ---------------RPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVS 293 (327)
Q Consensus 229 ---------------~~~~f~~~L~l~~~~~g~~nkL~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (327)
..++|.++|+|++++..+.|+|+|.++. +++|+++|++.++.|++.
T Consensus 285 s~~~~~r~~~~~v~~~s~tfl~~l~l~~~g~rr~~~L~W~~~~-------------------~~~~~d~et~~se~~l~~ 345 (366)
T KOG2997|consen 285 SDYKYRRGRRVPVQEASQTFLVELQLCGSGHRRFNKLKWIHHS-------------------ITYKSDKETAVSEFPLTK 345 (366)
T ss_pred hhhhhhcccccccccccceeEEEEEEecccchhhhhheeeeee-------------------eeEeecccccccCCcccc
Confidence 2367999999999999999999998875 247888899999999999
Q ss_pred ccCCCCceeeeecccccccccC
Q 020370 294 HKRGLTPFVFVPFEEVETSVLN 315 (327)
Q Consensus 294 ~~rg~~~~~fv~~~~~~~~~~n 315 (327)
|++| .-|++|++++++.++||
T Consensus 346 ~k~~-~~FsrV~Sy~~d~e~l~ 366 (366)
T KOG2997|consen 346 MKTP-LFFSRVKSYTADSERLL 366 (366)
T ss_pred ccCc-ceEEEeeeeeccccccC
Confidence 9999 88999999999988876
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.31 E-value=1.3e-12 Score=91.96 Aligned_cols=46 Identities=41% Similarity=0.956 Sum_probs=40.7
Q ss_pred ccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHh
Q 020370 61 RCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 106 (327)
Q Consensus 61 ~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~ 106 (327)
..||+||+.+||++|+++|+.++++|||+|+.++.++.+|+++|.+
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 5899999999999999999999999999999999999999999864
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.78 E-value=3.9e-09 Score=73.91 Aligned_cols=46 Identities=30% Similarity=0.650 Sum_probs=40.4
Q ss_pred cccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHH
Q 020370 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACL 105 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~ 105 (327)
+..||+|++.+||++|++.++.++++|||+|+.++.+..+|+..|+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 5789999999999999999999999999999999999999999874
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.66 E-value=2.2e-08 Score=67.13 Aligned_cols=40 Identities=38% Similarity=0.757 Sum_probs=38.5
Q ss_pred CCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHH
Q 020370 63 LPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRN 102 (327)
Q Consensus 63 LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~ 102 (327)
||+|++.+||++|++.|+.++++|||.|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=98.13 E-value=1.6e-06 Score=82.21 Aligned_cols=105 Identities=18% Similarity=0.317 Sum_probs=75.8
Q ss_pred chhcccCCHHHHHHHhcCC-ChhhhHhHhhhcHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhC
Q 020370 57 ALIHRCLPDELLFEVFARM-SPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLR 135 (327)
Q Consensus 57 c~iL~~LP~EILl~Ils~L-d~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~w~~~~~~~~~~l~~~~~~~sWR~Mf~~R 135 (327)
.+.+.+||.|+++.|+..| |.+||..+|++--.++.+++++.|||.+|+..|+...+.. ..++......+||+||+.-
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~-~l~l~k~~q~dWkqmyf~L 277 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHT-ILILSKKGQKDWKQMYFQL 277 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hhhhccccchhHHHHHHHH
Confidence 3467899999999999888 8999999999999999999999999999999887533322 2233455567899999875
Q ss_pred CccccCc---EEEeccceecCCcc-cc-cccCce
Q 020370 136 PRIRIDG---LYVSRNTYIRAGVA-EW-KITNPV 164 (327)
Q Consensus 136 PrIRf~G---~YIS~~~YiR~G~~-~~-~~~~Pv 164 (327)
. |..| .|..+...+|+=.. -| +..+|+
T Consensus 278 ~--r~yg~keqyad~lhlCrhC~~LfWks~gHPC 309 (332)
T KOG3926|consen 278 R--RTYGVKEQYADTLHLCRHCCILFWKSDGHPC 309 (332)
T ss_pred H--HhcChHHHHHHHHHHHhhceEeeecCCCCCc
Confidence 3 2323 34444555555433 23 335554
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=9.6e-06 Score=78.72 Aligned_cols=51 Identities=25% Similarity=0.516 Sum_probs=45.8
Q ss_pred cchhcccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHh
Q 020370 56 TALIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 106 (327)
Q Consensus 56 pc~iL~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~ 106 (327)
|-.....|||||++.||+.|.-.+|.+.+.|||+|+.++.++.+|..+-..
T Consensus 94 pgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~ 144 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLT 144 (419)
T ss_pred CCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccC
Confidence 444468999999999999999999999999999999999999999887554
No 7
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.98 E-value=0.00064 Score=67.00 Aligned_cols=47 Identities=19% Similarity=0.562 Sum_probs=44.9
Q ss_pred cccCC----HHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHh
Q 020370 60 HRCLP----DELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 106 (327)
Q Consensus 60 L~~LP----~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~ 106 (327)
.+.|| ++|...||+|||..||.+|-+|||+|+.+..+..+||.+..+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~ 125 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIER 125 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHH
Confidence 47899 999999999999999999999999999999999999999876
No 8
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=96.61 E-value=0.0024 Score=52.80 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=52.5
Q ss_pred cccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhC
Q 020370 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLR 135 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~w~~~~~~~~~~l~~~~~~~sWR~Mf~~R 135 (327)
+..+|.+++..||..++++.|.++-..|..+. -.++.||+.+|.+.|+...... .+.-..+||++|...
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~~-----~~~~~~~Wr~~Y~~~ 72 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKRQ-----KPKEPESWRELYEKL 72 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhcc-----cccccchHHHHHHHH
Confidence 35799999999999999999999999885433 3467999999999997522110 122236999999864
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.88 E-value=0.0037 Score=65.24 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=45.3
Q ss_pred cccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHhh
Q 020370 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA 107 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~ 107 (327)
+..||.|+..+||.+||++++.++++||+.|+.++.++..|.+.|...
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~ 155 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCREL 155 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhh
Confidence 589999999999999999999999999999999999999999888775
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.82 E-value=0.0039 Score=62.97 Aligned_cols=51 Identities=29% Similarity=0.545 Sum_probs=47.4
Q ss_pred cccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHhhccC
Q 020370 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQL 110 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~w~~ 110 (327)
--.||.|++++||++||..++.++|++|+.|+.++.|-.-|.++-+-+++.
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r 122 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR 122 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh
Confidence 357999999999999999999999999999999999999999998887764
No 11
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.0045 Score=60.79 Aligned_cols=55 Identities=25% Similarity=0.281 Sum_probs=50.5
Q ss_pred hhcccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHhhccCCc
Q 020370 58 LIHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSG 112 (327)
Q Consensus 58 ~iL~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~w~~~~ 112 (327)
..++.+|..+++.|++++..+++.++|+|.+++..+.....+|.+.|.+.|....
T Consensus 6 ~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~is~ 60 (386)
T KOG4408|consen 6 LGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLLISE 60 (386)
T ss_pred cchhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccccccc
Confidence 3568899999999999999999999999999999999999999999999887644
No 12
>PF13013 F-box-like_2: F-box-like domain
Probab=88.56 E-value=0.52 Score=39.45 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=29.3
Q ss_pred hcccCCHHHHHHHhcCCChhhhHhHhhhcHHHHH
Q 020370 59 IHRCLPDELLFEVFARMSPYDLGKASCVCRKWKY 92 (327)
Q Consensus 59 iL~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~ 92 (327)
.+.+||.||+..|+.+.+..++..++.+|+..+.
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~ 54 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRS 54 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHH
Confidence 3678999999999999999999989999985543
No 13
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=87.12 E-value=0.51 Score=47.36 Aligned_cols=37 Identities=30% Similarity=0.688 Sum_probs=32.3
Q ss_pred cccCCHHHHHHHhcCC-ChhhhHhHhhhcHHHHHhcCC
Q 020370 60 HRCLPDELLFEVFARM-SPYDLGKASCVCRKWKYTIRN 96 (327)
Q Consensus 60 L~~LP~EILl~Ils~L-d~~sL~~ls~VCr~f~~L~~d 96 (327)
.+.||.|||..|...| ..-|+.+++.||+.|+..+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3589999999999999 567999999999999987553
No 14
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=67.09 E-value=6.9 Score=38.84 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=17.8
Q ss_pred hhhhHhHhhhcHHHHHhcCC----------CchhHHHHHhh
Q 020370 77 PYDLGKASCVCRKWKYTIRN----------PVFWRNACLKA 107 (327)
Q Consensus 77 ~~sL~~ls~VCr~f~~L~~d----------d~LWr~lC~~~ 107 (327)
..++-+++|+ |-|..-+.+ ...||...++.
T Consensus 148 ~~~lwR~aC~-KvW~~s~~~ln~~~~~sky~~SWR~Mfl~R 187 (366)
T KOG2997|consen 148 DPELWRLACL-KVWQRSCIKLNPKILQSKYYTSWREMFLER 187 (366)
T ss_pred ChHHHHHHHH-HHHHHhhhccchhhhhhHHHhHHHHHHhhC
Confidence 3456666666 666654322 35688877764
No 15
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=52.73 E-value=11 Score=30.03 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred cccCCHHHHHHHhcCCChhhhHhH
Q 020370 60 HRCLPDELLFEVFARMSPYDLGKA 83 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld~~sL~~l 83 (327)
+..||.||...|+++|+-.||..+
T Consensus 72 w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 72 WNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHH
Confidence 578999999999999999998754
No 16
>PHA02123 hypothetical protein
Probab=38.89 E-value=23 Score=30.01 Aligned_cols=43 Identities=35% Similarity=0.607 Sum_probs=32.9
Q ss_pred CCccccCcEEEeccceecCCccc--ccccCceeEEEeeeeeeecCCCceEEeeccc
Q 020370 135 RPRIRIDGLYVSRNTYIRAGVAE--WKITNPVHIVCYYRYMRFFPSGRFIYKNSSQ 188 (327)
Q Consensus 135 RPrIRf~G~YIS~~~YiR~G~~~--~~~~~Pvh~VtYYRYlRF~pDG~~l~lls~~ 188 (327)
|--|-|||+ +.-+.|+|.|.+. |+..||. |.|-|.+++.+|+.
T Consensus 95 rvmis~~gi-vqnv~yirsgsaivi~r~dnp~----------fnp~g~v~sitt~~ 139 (146)
T PHA02123 95 RVMISLNGI-VQNVDYIRSGSAIVIRRMDNPT----------FNPIGDVLSITTSS 139 (146)
T ss_pred EEEEEecce-EeeeEEEecCcEEEEEecCCCC----------CCcccceEEEecCC
Confidence 334778887 4557899999774 4667884 88999999999764
No 17
>PF13924 Lipocalin_5: Lipocalin-like domain
Probab=36.37 E-value=2.7e+02 Score=23.64 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=32.2
Q ss_pred cCceeEEEeeeeeeecCCCceEEeecccchhhhccccccc--------ccCCCceEEEEEEEeCCEEEEEE
Q 020370 161 TNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFR--------AAKADCVFTGHYTLSEEKVEAAV 223 (327)
Q Consensus 161 ~~Pvh~VtYYRYlRF~pDG~~l~lls~~~P~~VV~~l~~~--------~~~~~~~~~G~~~l~~d~v~~~~ 223 (327)
.+|..++. |.+||.+-..++...+..+...-... ..+.--++.|+|+++++.|+-.+
T Consensus 25 ~~p~G~l~------Yt~dG~ms~~i~~~~r~~~~~~~~~~~t~~e~~~~~~~~~aY~G~y~v~~~~v~h~v 89 (140)
T PF13924_consen 25 PDPSGLLI------YTPDGYMSAQIMRPDRPPFASPDKWNATDAEWAAAARGYLAYSGRYEVDEDTVTHHV 89 (140)
T ss_pred CCCcEEEE------ECCCCeEEEEEecCCCCCcCcCccccCCHHHHHHHhhhheEEEEEEEEcCcEEEEEE
Confidence 36777655 46999875555444433321111111 11234588999999999655443
No 18
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.95 E-value=43 Score=33.41 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.1
Q ss_pred cccCCHHHHHHHhcCCChhhhHhHhhhcH
Q 020370 60 HRCLPDELLFEVFARMSPYDLGKASCVCR 88 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld~~sL~~ls~VCr 88 (327)
+..||.||...|+++|+-.||..+..-|+
T Consensus 448 w~~lP~Eik~~Il~~l~~~dl~~~~~~~~ 476 (480)
T PHA03100 448 WNILPIEIKYKILEYLSNRDLKSLIENFT 476 (480)
T ss_pred hhhCcHHHHHHHHHhCCHHHHHHHHhhhc
Confidence 35899999999999999999977655543
No 19
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=25.38 E-value=32 Score=33.07 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=7.9
Q ss_pred EEEEEEEecCCCC
Q 020370 233 LRIRLRLRGTTAG 245 (327)
Q Consensus 233 f~~~L~l~~~~~g 245 (327)
|-+-+.+-...+|
T Consensus 206 yAv~FavP~~tpG 218 (264)
T PF11794_consen 206 YAVAFAVPMNTPG 218 (264)
T ss_dssp G-EEEEEETT-TT
T ss_pred eEEEEEccCCCCC
Confidence 4567777777777
No 20
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=22.56 E-value=3.8e+02 Score=21.92 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=35.9
Q ss_pred EEEeeeeeeecCCCceE----EeecccchhhhcccccccccCCCceEEEEEEEeCCEEEEEEecCCC--CceEE
Q 020370 166 IVCYYRYMRFFPSGRFI----YKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGL--RPTVL 233 (327)
Q Consensus 166 ~VtYYRYlRF~pDG~~l----~lls~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~~~~~~~--~~~~f 233 (327)
.++-=+|---..+++.+ .|-.+.+|+.+==.... .+.....++|-|+|++|+..+-...+|. +++.|
T Consensus 34 ~~~g~~~~~~~~~~~~~~~~~~Ld~~~~Pk~id~~~~~-g~~~g~~~~gIY~l~gd~L~vC~~~~g~~~RPt~F 106 (107)
T TIGR03067 34 TFKGDKLTVKDGEGDQGKGTFKLDPAANPKTIDLTSPD-GPDKGKTIKGIYKLDGDTLTVCFSGGGDKPRPTEF 106 (107)
T ss_pred EEeCCEEEEEcCCCcceeEEEEECCCCCccEEEEEccC-CCCCCCEEEEEEEEcCCEEEEEECCCCCCCCCCCC
Confidence 34444455455666532 22244455443221111 1222358999999999977665545554 66654
Done!