Query 020370
Match_columns 327
No_of_seqs 303 out of 1214
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 15:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 2.6E-11 8.9E-16 86.0 4.1 45 59-103 8-52 (53)
2 2e31_A FBS1, F-box only protei 99.1 6.9E-11 2.4E-15 112.5 4.9 75 59-139 50-125 (297)
3 3l2o_B F-box only protein 4; s 98.8 1.5E-09 5.1E-14 103.5 3.6 49 59-107 4-52 (312)
4 2ovr_B FBW7, F-BOX/WD repeat p 98.8 3.6E-09 1.2E-13 100.8 4.3 77 60-136 19-97 (445)
5 1p22_A F-BOX/WD-repeat protein 98.7 7.2E-09 2.5E-13 98.8 3.5 50 60-109 11-64 (435)
6 3v7d_B Cell division control p 98.7 8.8E-09 3E-13 98.0 3.9 49 60-108 15-64 (464)
7 2ast_B S-phase kinase-associat 97.8 6.4E-06 2.2E-10 75.9 2.8 47 60-106 9-55 (336)
8 2p1m_B Transport inhibitor res 96.8 0.00053 1.8E-08 67.7 3.4 34 60-93 6-40 (594)
9 4hfx_A Transcription elongatio 96.4 0.0011 3.8E-08 53.1 1.9 63 62-135 12-74 (97)
10 3ogk_B Coronatine-insensitive 96.1 0.0019 6.5E-08 63.8 2.3 33 61-93 14-47 (592)
11 4gzv_A Hypothetical protein; A 39.5 1.1E+02 0.0037 25.8 7.6 77 175-268 41-122 (142)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.14 E-value=2.6e-11 Score=86.03 Aligned_cols=45 Identities=31% Similarity=0.627 Sum_probs=40.0
Q ss_pred hcccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHH
Q 020370 59 IHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNA 103 (327)
Q Consensus 59 iL~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~l 103 (327)
.+..||+||+.+||++|++.|+.++++|||+|+.++.++.+||.+
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 358999999999999999999999999999999999999999975
No 2
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.07 E-value=6.9e-11 Score=112.49 Aligned_cols=75 Identities=23% Similarity=0.476 Sum_probs=60.4
Q ss_pred hcccCCHHHHHHHhcCCChhhhH-hHhhhcHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhCCc
Q 020370 59 IHRCLPDELLFEVFARMSPYDLG-KASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPR 137 (327)
Q Consensus 59 iL~~LP~EILl~Ils~Ld~~sL~-~ls~VCr~f~~L~~dd~LWr~lC~~~w~~~~~~~~~~l~~~~~~~sWR~Mf~~RPr 137 (327)
.+..||+|||.+||++|++++|+ +|++|||+|+.|+.++.+|+.+|.+.+-..... ......+||++|+.+++
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~------~~~~~~~Wk~~y~~~~~ 123 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS------ADEERDHWQQFYFLSKR 123 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----------CCSCHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccc------cCCCCCChhhhheheec
Confidence 35899999999999999999999 999999999999999999999999883221110 11245789999999865
Q ss_pred cc
Q 020370 138 IR 139 (327)
Q Consensus 138 IR 139 (327)
-|
T Consensus 124 gR 125 (297)
T 2e31_A 124 RR 125 (297)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 3
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.81 E-value=1.5e-09 Score=103.48 Aligned_cols=49 Identities=27% Similarity=0.547 Sum_probs=47.0
Q ss_pred hcccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHhh
Q 020370 59 IHRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKA 107 (327)
Q Consensus 59 iL~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~ 107 (327)
.++.||+||+++||+||+|+||+++++|||.|+.++.|+.|||.+|.+.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 3689999999999999999999999999999999999999999999975
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.76 E-value=3.6e-09 Score=100.80 Aligned_cols=77 Identities=22% Similarity=0.467 Sum_probs=57.3
Q ss_pred cccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHhhccCCcch-hhhhh-hccCCCccHHHHHHhCC
Q 020370 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVV-ENYKI-LQSRYEGSWRKMWLLRP 136 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~w~~~~~~-~~~~l-~~~~~~~sWR~Mf~~RP 136 (327)
+..||+|++.+||+||++.||.++++|||+|+.++.++.+||.+|++........ ..... ........||..|..+.
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~ 97 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQH 97 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhh
Confidence 6899999999999999999999999999999999999999999998753221110 00000 00112357999987654
No 5
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.67 E-value=7.2e-09 Score=98.78 Aligned_cols=50 Identities=16% Similarity=0.424 Sum_probs=47.5
Q ss_pred cccCCHH----HHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHhhcc
Q 020370 60 HRCLPDE----LLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQ 109 (327)
Q Consensus 60 L~~LP~E----ILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~w~ 109 (327)
+..||+| |+++||+|||+.+|.++++|||+|+.++.++.|||.+|.+.+.
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~ 64 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR 64 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 5889999 9999999999999999999999999999999999999998753
No 6
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.67 E-value=8.8e-09 Score=97.98 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=46.3
Q ss_pred cccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCC-CchhHHHHHhhc
Q 020370 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRN-PVFWRNACLKAW 108 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~d-d~LWr~lC~~~w 108 (327)
+..||+||+++||+|||+++|.++++|||+|+.++.+ +.|||.+|++..
T Consensus 15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~ 64 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64 (464)
T ss_dssp HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence 5899999999999999999999999999999999998 799999998764
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.82 E-value=6.4e-06 Score=75.86 Aligned_cols=47 Identities=32% Similarity=0.620 Sum_probs=42.6
Q ss_pred cccCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHh
Q 020370 60 HRCLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 106 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~ 106 (327)
+..||+|++.+||++|+..++.++++|||+|+.++.++.+|+.+-..
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~ 55 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLT 55 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECT
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccc
Confidence 58999999999999999999999999999999999888889765443
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.83 E-value=0.00053 Score=67.69 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=29.4
Q ss_pred cccCCHHHHHHHhcCCC-hhhhHhHhhhcHHHHHh
Q 020370 60 HRCLPDELLFEVFARMS-PYDLGKASCVCRKWKYT 93 (327)
Q Consensus 60 L~~LP~EILl~Ils~Ld-~~sL~~ls~VCr~f~~L 93 (327)
++.||+|||.+||++|+ .+++.++++|||+|+.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 57899999999999999 99999999999999988
No 9
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=96.40 E-value=0.0011 Score=53.09 Aligned_cols=63 Identities=21% Similarity=0.358 Sum_probs=36.4
Q ss_pred cCCHHHHHHHhcCCChhhhHhHhhhcHHHHHhcCCCchhHHHHHhhccCCcchhhhhhhccCCCccHHHHHHhC
Q 020370 62 CLPDELLFEVFARMSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLR 135 (327)
Q Consensus 62 ~LP~EILl~Ils~Ld~~sL~~ls~VCr~f~~L~~dd~LWr~lC~~~w~~~~~~~~~~l~~~~~~~sWR~Mf~~R 135 (327)
..|.++|.-||...++..|.++-.-|- +.+-.++.||+.+|.+.|+... +....+||+||...
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP--~L~~dTdeLWk~~c~rdF~~~~---------p~e~esWRelY~rl 74 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNH--VLIEETDQLWKVHCHRDFKEER---------PEEYESWREMYLRL 74 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC---------CCSSSCHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCc--ccchhhHHHHHHHHHhHCcccC---------CCCCCCHHHHHHHH
Confidence 468899999999999999999888876 3345677999999999997532 23347999999853
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.12 E-value=0.0019 Score=63.76 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHhcCC-ChhhhHhHhhhcHHHHHh
Q 020370 61 RCLPDELLFEVFARM-SPYDLGKASCVCRKWKYT 93 (327)
Q Consensus 61 ~~LP~EILl~Ils~L-d~~sL~~ls~VCr~f~~L 93 (327)
..||+|+|.+||++| +.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 479999999999999 899999999999999987
No 11
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=39.51 E-value=1.1e+02 Score=25.77 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=46.1
Q ss_pred ecCCCceEEeecccchhhhcccccccccCCCceEEEEEEEeCCEEEEEEe-----cCCCCceEEEEEEEEecCCCCCcce
Q 020370 175 FFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVL-----YPGLRPTVLRIRLRLRGTTAGANNR 249 (327)
Q Consensus 175 F~pDG~~l~lls~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~~~-----~~~~~~~~f~~~L~l~~~~~g~~nk 249 (327)
..+|||+.-++.......+ =...|.|.+..|....+-+ .|-...+.-.+++.+.. +|.
T Consensus 41 lS~DgtF~N~~m~~~~~ai------------It~yGtY~l~SD~~Y~E~i~kni~~p~~~g~~n~L~fe~~~-----dn~ 103 (142)
T 4gzv_A 41 LSDDGRIVNFTIIPGADAI------------ITGYGTYKQLTDDSYKESIEKNIHLPMLDNQDNILEFEIKD-----NDY 103 (142)
T ss_dssp ECTTSEEEEEECCTTSCCE------------EEEEEEEEEEETTEEEEEEEEESSSGGGTTEEEEEEEEEET-----TTE
T ss_pred ECCCCcEEEEEEeCCCCcE------------EEEeEEEEecCCCeeeeeecccccCccccCCccEEEEEEcc-----CCE
Confidence 5789998777732111111 2457999998884333322 13223333356666665 377
Q ss_pred eEEeEeEeecCCCCCCCCC
Q 020370 250 MDLLSLVTSGMNDNEVNGH 268 (327)
Q Consensus 250 L~~~~~~s~~~~~~~~~~~ 268 (327)
|...-+..-+.+++|++.|
T Consensus 104 l~lsy~~~~~~~G~e~~~w 122 (142)
T 4gzv_A 104 LHLKYFIKSDLNGNELNTW 122 (142)
T ss_dssp EEEEEEEEECTTCCEEEEE
T ss_pred EEEEEEccCCCCCcccCCc
Confidence 7777778888888876554
Done!