Query 020371
Match_columns 327
No_of_seqs 300 out of 1627
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719 Dual specificity phosp 100.0 6.9E-38 1.5E-42 263.2 15.0 173 39-217 1-174 (183)
2 PRK12361 hypothetical protein; 100.0 6.6E-30 1.4E-34 260.9 19.0 174 36-217 63-241 (547)
3 smart00195 DSPc Dual specifici 100.0 1.2E-29 2.7E-34 213.5 16.9 136 66-211 2-137 (138)
4 cd00127 DSPc Dual specificity 100.0 3.9E-28 8.5E-33 203.7 15.8 138 65-210 2-139 (139)
5 KOG1718 Dual specificity phosp 99.9 3.3E-27 7.2E-32 201.4 14.6 148 60-217 12-159 (198)
6 PF00782 DSPc: Dual specificit 99.9 1.4E-27 3E-32 199.5 11.5 132 72-211 1-132 (133)
7 PTZ00242 protein tyrosine phos 99.9 1.4E-24 3E-29 189.6 16.1 145 60-213 6-158 (166)
8 KOG1717 Dual specificity phosp 99.9 8.9E-25 1.9E-29 198.4 12.8 145 65-217 172-316 (343)
9 KOG1716 Dual specificity phosp 99.9 4.5E-24 9.7E-29 201.5 16.6 149 63-218 73-221 (285)
10 PTZ00393 protein tyrosine phos 99.9 8.4E-24 1.8E-28 192.2 16.3 143 62-214 81-230 (241)
11 KOG1720 Protein tyrosine phosp 99.9 1.6E-21 3.6E-26 172.2 15.1 124 84-216 88-211 (225)
12 PF03162 Y_phosphatase2: Tyros 99.8 8.5E-19 1.8E-23 152.8 8.5 139 64-210 6-147 (164)
13 COG2453 CDC14 Predicted protei 99.7 3.6E-16 7.8E-21 138.2 13.4 99 110-213 68-167 (180)
14 PF05706 CDKN3: Cyclin-depende 99.7 2.6E-16 5.6E-21 135.9 8.2 112 71-186 42-168 (168)
15 KOG2836 Protein tyrosine phosp 99.6 3.4E-14 7.3E-19 117.7 13.2 129 72-210 19-153 (173)
16 TIGR01244 conserved hypothetic 99.6 2.5E-14 5.5E-19 120.8 12.6 118 66-194 3-126 (135)
17 smart00012 PTPc_DSPc Protein t 99.5 5.5E-13 1.2E-17 105.4 11.4 93 118-210 6-103 (105)
18 smart00404 PTPc_motif Protein 99.5 5.5E-13 1.2E-17 105.4 11.4 93 118-210 6-103 (105)
19 PF04273 DUF442: Putative phos 99.4 7E-13 1.5E-17 108.2 7.7 97 66-168 3-105 (110)
20 PLN02727 NAD kinase 99.4 3.8E-12 8.2E-17 133.5 11.3 98 71-171 262-364 (986)
21 cd00047 PTPc Protein tyrosine 99.3 1.2E-11 2.7E-16 112.6 11.3 95 115-209 130-228 (231)
22 smart00194 PTPc Protein tyrosi 99.3 1.3E-11 2.8E-16 114.5 11.0 87 123-209 167-255 (258)
23 KOG1572 Predicted protein tyro 99.3 1.3E-11 2.8E-16 111.6 10.3 122 65-193 60-188 (249)
24 PHA02747 protein tyrosine phos 99.2 4.8E-11 1E-15 114.3 10.1 97 115-213 187-298 (312)
25 KOG0790 Protein tyrosine phosp 99.2 4.8E-11 1E-15 115.7 8.7 129 82-210 372-517 (600)
26 PHA02740 protein tyrosine phos 99.2 2.1E-10 4.6E-15 109.2 12.6 97 115-213 181-287 (298)
27 PHA02742 protein tyrosine phos 99.2 2E-10 4.2E-15 109.6 12.1 93 123-215 192-297 (303)
28 PHA02738 hypothetical protein; 99.2 6.4E-11 1.4E-15 113.8 8.8 97 115-213 182-293 (320)
29 PRK15375 pathogenicity island 99.2 2.1E-10 4.6E-15 114.1 11.5 88 122-214 431-530 (535)
30 PHA02746 protein tyrosine phos 99.1 3.7E-10 8.1E-15 108.6 11.1 94 116-211 206-311 (323)
31 PF13350 Y_phosphatase3: Tyros 99.1 2.4E-10 5.1E-15 99.3 8.6 111 67-187 15-158 (164)
32 KOG0792 Protein tyrosine phosp 99.1 2.3E-10 5E-15 120.5 9.6 102 114-217 1030-1133(1144)
33 KOG2283 Clathrin coat dissocia 99.1 2.7E-10 5.8E-15 112.9 9.1 140 65-214 15-175 (434)
34 PF00102 Y_phosphatase: Protei 99.1 8.4E-10 1.8E-14 99.7 11.1 90 121-210 142-233 (235)
35 COG3453 Uncharacterized protei 99.1 1.9E-09 4.1E-14 87.9 10.9 114 66-190 4-123 (130)
36 KOG2386 mRNA capping enzyme, g 99.0 9.1E-10 2E-14 107.0 9.3 137 71-212 40-184 (393)
37 COG5599 PTP2 Protein tyrosine 98.8 8.3E-09 1.8E-13 94.8 8.1 101 115-217 185-297 (302)
38 COG5350 Predicted protein tyro 98.7 8.2E-08 1.8E-12 81.6 9.2 123 78-204 20-146 (172)
39 PF14566 PTPlike_phytase: Inos 98.7 3.8E-08 8.2E-13 84.5 5.8 60 109-170 87-146 (149)
40 COG2365 Protein tyrosine/serin 98.6 6.5E-08 1.4E-12 89.9 7.3 126 66-200 48-184 (249)
41 KOG0791 Protein tyrosine phosp 98.6 1.8E-07 3.9E-12 89.6 10.1 101 115-217 255-357 (374)
42 KOG0789 Protein tyrosine phosp 98.4 1.5E-06 3.2E-11 85.7 10.4 68 148-215 299-368 (415)
43 KOG0793 Protein tyrosine phosp 98.4 7.1E-07 1.5E-11 91.1 7.4 94 117-210 895-991 (1004)
44 KOG4228 Protein tyrosine phosp 98.4 6.1E-07 1.3E-11 95.9 6.6 95 115-210 984-1081(1087)
45 KOG4228 Protein tyrosine phosp 98.1 2.8E-06 6.2E-11 90.9 4.7 86 122-210 703-793 (1087)
46 PF04179 Init_tRNA_PT: Initiat 97.4 0.0028 6.1E-08 63.7 13.4 134 68-209 292-449 (451)
47 PF14671 DSPn: Dual specificit 95.3 0.041 8.8E-07 46.9 5.8 69 123-196 39-114 (141)
48 KOG4471 Phosphatidylinositol 3 93.6 0.14 3E-06 52.6 6.0 35 138-172 364-398 (717)
49 PF06602 Myotub-related: Myotu 85.8 1.9 4.1E-05 42.3 6.2 25 146-170 229-253 (353)
50 PLN02160 thiosulfate sulfurtra 85.4 1.5 3.3E-05 36.7 4.7 20 146-166 79-98 (136)
51 KOG1089 Myotubularin-related p 84.5 1.7 3.8E-05 44.8 5.5 35 136-170 331-366 (573)
52 PRK01415 hypothetical protein; 81.2 3.3 7.1E-05 38.6 5.5 81 73-170 109-191 (247)
53 cd01448 TST_Repeat_1 Thiosulfa 80.9 7.2 0.00016 31.3 6.9 24 146-170 77-100 (122)
54 cd01518 RHOD_YceA Member of th 80.7 8.1 0.00017 29.9 6.9 19 146-165 59-77 (101)
55 COG0607 PspE Rhodanese-related 80.0 5.1 0.00011 31.1 5.6 67 85-170 14-81 (110)
56 COG1054 Predicted sulfurtransf 74.0 10 0.00022 36.3 6.5 87 67-170 104-192 (308)
57 PRK00142 putative rhodanese-re 64.5 12 0.00026 36.0 5.1 22 147-170 170-191 (314)
58 cd01523 RHOD_Lact_B Member of 61.4 9.2 0.0002 29.5 3.1 19 147-166 60-78 (100)
59 cd01533 4RHOD_Repeat_2 Member 58.9 19 0.00042 28.2 4.6 16 148-164 66-81 (109)
60 PF00581 Rhodanese: Rhodanese- 54.3 48 0.001 25.4 6.2 73 88-168 10-86 (113)
61 cd01522 RHOD_1 Member of the R 53.4 24 0.00052 28.3 4.4 20 146-166 62-81 (117)
62 cd01528 RHOD_2 Member of the R 51.1 30 0.00065 26.6 4.5 18 147-165 57-74 (101)
63 cd01520 RHOD_YbbB Member of th 47.8 40 0.00087 27.4 4.9 30 145-180 83-112 (128)
64 PF03668 ATP_bind_2: P-loop AT 47.6 35 0.00076 32.5 5.0 18 150-167 244-261 (284)
65 PF15040 Humanin: Humanin fami 47.1 5.8 0.00013 23.0 -0.2 14 286-299 2-15 (24)
66 PRK05569 flavodoxin; Provision 47.0 1.3E+02 0.0029 24.4 8.1 90 113-213 49-139 (141)
67 PRK05320 rhodanese superfamily 45.9 38 0.00082 31.6 5.0 22 147-170 174-195 (257)
68 TIGR03865 PQQ_CXXCW PQQ-depend 45.4 41 0.0009 28.9 4.8 19 147-165 115-133 (162)
69 PF04343 DUF488: Protein of un 44.2 97 0.0021 25.1 6.7 42 83-124 6-54 (122)
70 PF03861 ANTAR: ANTAR domain; 38.7 37 0.00079 23.8 2.9 24 165-192 17-40 (56)
71 PRK05416 glmZ(sRNA)-inactivati 38.5 51 0.0011 31.3 4.7 35 133-167 223-264 (288)
72 PF02571 CbiJ: Precorrin-6x re 38.3 36 0.00077 31.7 3.5 81 71-153 46-135 (249)
73 PRK09875 putative hydrolase; P 35.5 1.4E+02 0.0031 28.4 7.2 19 82-100 39-57 (292)
74 cd01531 Acr2p Eukaryotic arsen 35.3 87 0.0019 24.6 5.0 21 147-167 61-81 (113)
75 cd01530 Cdc25 Cdc25 phosphatas 35.1 43 0.00093 27.2 3.2 24 146-170 66-89 (121)
76 COG1660 Predicted P-loop-conta 34.2 71 0.0015 30.3 4.7 35 133-167 221-262 (286)
77 cd01443 Cdc25_Acr2p Cdc25 enzy 33.0 1.1E+02 0.0023 24.2 5.1 19 148-166 66-84 (113)
78 cd01526 RHOD_ThiF Member of th 32.8 46 0.00099 26.8 3.0 20 146-166 70-89 (122)
79 PRK05600 thiamine biosynthesis 32.0 68 0.0015 31.6 4.6 20 149-170 333-352 (370)
80 PRK08057 cobalt-precorrin-6x r 31.9 33 0.00071 31.9 2.2 79 71-153 45-132 (248)
81 PRK10287 thiosulfate:cyanide s 31.6 86 0.0019 24.9 4.3 18 148-166 60-77 (104)
82 cd01534 4RHOD_Repeat_3 Member 31.3 57 0.0012 24.8 3.2 16 148-164 56-71 (95)
83 PF10302 DUF2407: DUF2407 ubiq 30.7 27 0.00059 27.7 1.2 10 149-158 86-95 (97)
84 KOG0348 ATP-dependent RNA heli 30.6 1E+02 0.0022 32.3 5.5 51 45-96 217-268 (708)
85 PF13292 DXP_synthase_N: 1-deo 30.3 69 0.0015 30.3 4.0 41 108-156 229-269 (270)
86 cd01519 RHOD_HSP67B2 Member of 30.2 51 0.0011 25.3 2.8 17 147-164 65-81 (106)
87 cd01447 Polysulfide_ST Polysul 30.1 61 0.0013 24.6 3.2 18 146-164 59-76 (103)
88 COG2927 HolC DNA polymerase II 30.0 54 0.0012 28.1 3.0 22 136-157 17-38 (144)
89 KOG1530 Rhodanese-related sulf 29.9 80 0.0017 26.7 3.9 19 148-167 89-107 (136)
90 PF04364 DNA_pol3_chi: DNA pol 29.0 87 0.0019 26.2 4.1 24 134-157 15-38 (137)
91 cd01532 4RHOD_Repeat_1 Member 29.0 80 0.0017 23.9 3.6 23 148-170 50-72 (92)
92 cd01525 RHOD_Kc Member of the 28.9 64 0.0014 24.7 3.1 18 148-166 65-82 (105)
93 TIGR00853 pts-lac PTS system, 28.7 47 0.001 26.0 2.3 17 149-166 4-20 (95)
94 PRK11449 putative deoxyribonuc 28.6 1.1E+02 0.0025 28.3 5.2 34 132-165 111-144 (258)
95 PRK10886 DnaA initiator-associ 27.9 1.2E+02 0.0027 27.0 5.1 36 132-170 25-60 (196)
96 cd01529 4RHOD_Repeats Member o 27.7 53 0.0012 24.9 2.4 23 146-170 54-76 (96)
97 PRK05728 DNA polymerase III su 27.7 84 0.0018 26.5 3.8 25 133-157 14-38 (142)
98 COG0084 TatD Mg-dependent DNas 26.2 81 0.0018 29.5 3.8 51 113-168 95-145 (256)
99 TIGR02981 phageshock_pspE phag 25.9 74 0.0016 25.1 3.0 19 147-166 57-75 (101)
100 smart00400 ZnF_CHCC zinc finge 25.1 85 0.0019 21.7 2.9 32 152-189 23-54 (55)
101 COG0794 GutQ Predicted sugar p 24.7 1.2E+02 0.0026 27.4 4.4 33 132-170 26-58 (202)
102 cd07944 DRE_TIM_HOA_like 4-hyd 24.3 4.4E+02 0.0095 24.5 8.4 119 83-207 115-252 (266)
103 cd01527 RHOD_YgaP Member of th 24.3 85 0.0019 23.8 3.1 18 146-164 52-69 (99)
104 PF02673 BacA: Bacitracin resi 24.2 82 0.0018 29.5 3.4 27 156-188 159-185 (259)
105 PF01904 DUF72: Protein of unk 22.4 5.8E+02 0.013 23.0 10.6 78 80-157 132-213 (230)
106 TIGR02764 spore_ybaN_pdaB poly 22.2 2.6E+02 0.0057 24.1 6.1 53 109-166 115-168 (191)
107 TIGR00204 dxs 1-deoxy-D-xylulo 22.1 90 0.002 32.9 3.6 47 108-162 232-278 (617)
108 PRK06646 DNA polymerase III su 22.0 1.2E+02 0.0027 26.1 3.8 27 132-158 13-39 (154)
109 PF14532 Sigma54_activ_2: Sigm 22.0 1.8E+02 0.0039 23.7 4.8 34 132-165 5-38 (138)
110 PRK12554 undecaprenyl pyrophos 21.9 90 0.0019 29.6 3.2 26 157-188 166-191 (276)
111 cd01521 RHOD_PspE2 Member of t 21.8 1.1E+02 0.0024 23.9 3.3 19 146-164 62-81 (110)
112 TIGR00715 precor6x_red precorr 21.2 61 0.0013 30.3 1.9 81 72-153 47-134 (256)
113 TIGR00753 undec_PP_bacA undeca 20.8 99 0.0021 28.9 3.2 26 157-188 160-185 (255)
114 PRK05772 translation initiatio 20.3 2.1E+02 0.0045 28.3 5.4 14 146-159 165-178 (363)
115 PRK11493 sseA 3-mercaptopyruva 20.3 62 0.0013 30.2 1.8 17 146-163 229-245 (281)
116 cd05567 PTS_IIB_mannitol PTS_I 20.1 1.1E+02 0.0023 23.2 2.8 15 149-163 1-15 (87)
117 PRK00281 undecaprenyl pyrophos 20.1 1.1E+02 0.0023 28.9 3.3 26 157-188 164-189 (268)
No 1
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=6.9e-38 Score=263.20 Aligned_cols=173 Identities=61% Similarity=1.045 Sum_probs=163.9
Q ss_pred hhhhheecchHHHHHHHHHhhccCCCCccccCcEEEcCCCCc-cCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEE
Q 020371 39 AGARVLFYPTLLYNVVRNKIQSEFRWWDRVDQFIILGAVPFP-ADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDH 117 (327)
Q Consensus 39 ~~a~~l~~P~l~~~~~~~~~~~~~~~~s~I~~~LylG~~p~~-~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y 117 (327)
+++|++|||||+||++++| ++.++|| +|++++.+|..|+. .+.++++..|+..|+.+++++|...+...|+..|+++
T Consensus 1 ~~ar~~fyptllynvv~~k-~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~ 78 (183)
T KOG1719|consen 1 MGARVLFYPTLLYNVVREK-ASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEF 78 (183)
T ss_pred CCceeeecHHHHHHHHHHH-Hhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhcccee
Confidence 4789999999999999999 7778888 99999999999986 5788999999999999999999888888999999999
Q ss_pred EEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCc
Q 020371 118 LVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVL 197 (327)
Q Consensus 118 ~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~ 197 (327)
+.+|+.|....|+.+.+.++++||++....|+.|||||++|++||+|+++||| |+.++|++++|+.++|++||.+.
T Consensus 79 L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYL----mq~~~wtpe~A~~~vr~iRp~Vl 154 (183)
T KOG1719|consen 79 LVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYL----MQHKNWTPEAAVEHVRKIRPRVL 154 (183)
T ss_pred EEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhh----hhhcCCCHHHHHHHHHhcCccee
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhc
Q 020371 198 LASSQWQAVQDYYLQKVKKI 217 (327)
Q Consensus 198 ~n~~q~~~L~~~~~~~~~~~ 217 (327)
+.+.||+.|.+|++....+.
T Consensus 155 L~~~Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 155 LRPAQWDVLKEFYKQIVANA 174 (183)
T ss_pred ecHHHHHHHHHHHHHHHhcc
Confidence 99999999999997776655
No 2
>PRK12361 hypothetical protein; Provisional
Probab=99.97 E-value=6.6e-30 Score=260.88 Aligned_cols=174 Identities=28% Similarity=0.454 Sum_probs=150.2
Q ss_pred HhhhhhhheecchHH----HHHHHHHhhccCCCCccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccc
Q 020371 36 LVGAGARVLFYPTLL----YNVVRNKIQSEFRWWDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYH 111 (327)
Q Consensus 36 ~~~~~a~~l~~P~l~----~~~~~~~~~~~~~~~s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~ 111 (327)
-++++++|+|+||++ +++|.++. .+.+++++|.|+||+|+.+.+.+.+.|+++||++||||+.+.+.. .....
T Consensus 63 ~~~~~~~~l~~P~l~~~~~~~~~~r~~-~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~--~~~~~ 139 (547)
T PRK12361 63 TIPWYIRWVFIPFLLGTRLYNAWARKR-DSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGL--DWSLT 139 (547)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcc-cCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccc--ccccc
Confidence 478999999999995 45444443 456899999999999999999999999999999999999775431 11123
Q ss_pred cCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhh-cCCCHHHHHHHHH
Q 020371 112 DHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEH-RQMAPEAAYEYVR 190 (327)
Q Consensus 112 ~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~-~~~s~~~A~~~vr 190 (327)
..+++|+++|+.|. ..|+.++++++++||+++.+++++|||||++|+|||+++++||| |.+ .++++++|++++|
T Consensus 140 ~~~i~yl~iPi~D~-~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayL----m~~~~~~~~~eA~~~vr 214 (547)
T PRK12361 140 EEDIDYLNIPILDH-SVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYL----LCKDPDLTVEEVLQQIK 214 (547)
T ss_pred ccCceEEEeecCCC-CCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHH----HHhccCCCHHHHHHHHH
Confidence 46799999999997 57788999999999999999999999999999999999999999 865 5799999999999
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHhhhhc
Q 020371 191 SIRPRVLLASSQWQAVQDYYLQKVKKI 217 (327)
Q Consensus 191 ~~Rp~v~~n~~q~~~L~~~~~~~~~~~ 217 (327)
++||.+.+|+.|+++|++|++....+.
T Consensus 215 ~~Rp~v~~n~~q~~~l~~~~~~~~~~~ 241 (547)
T PRK12361 215 QIRKTARLNKRQLRALEKMLEQGKLNI 241 (547)
T ss_pred HHCCCCCCCHHHHHHHHHHHHcCCccc
Confidence 999999999999999999996544433
No 3
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=1.2e-29 Score=213.53 Aligned_cols=136 Identities=24% Similarity=0.414 Sum_probs=126.0
Q ss_pred ccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 020371 66 DRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENA 145 (327)
Q Consensus 66 s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~ 145 (327)
++|.|+||+|++|.+.+.+.|+++||++||||+.+.+. +...+++|+++|+.|....+..+.+.++++||+...
T Consensus 2 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~ 75 (138)
T smart00195 2 SEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAE 75 (138)
T ss_pred cEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999887542 124689999999999656777889999999999999
Q ss_pred hCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHH
Q 020371 146 SLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYL 211 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~ 211 (327)
..+++|||||.+|.||||++++||| |+..++++++|++++|++||.+.+|+.|+++|+.|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl----~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYL----MKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHH----HHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 9999999999999999999999999 9999999999999999999999999999999999984
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=3.9e-28 Score=203.71 Aligned_cols=138 Identities=27% Similarity=0.416 Sum_probs=126.4
Q ss_pred CccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHH
Q 020371 65 WDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHEN 144 (327)
Q Consensus 65 ~s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~ 144 (327)
.++|.++||+|++|.+.+.+.|+++||++||||+.+.+. ..+...|+.|+++|+.|....+....+..+++||+..
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999987553 3445678999999999986566677899999999999
Q ss_pred HhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHH
Q 020371 145 ASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYY 210 (327)
Q Consensus 145 ~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~ 210 (327)
..++++|||||.+|.|||++++++|| |+..++++.+|+++||++||.+.+|+.|+.+|.+|+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l----~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYL----MKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHH----HHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 98899999999999999999999999 998999999999999999999999999999999985
No 5
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=3.3e-27 Score=201.40 Aligned_cols=148 Identities=23% Similarity=0.335 Sum_probs=133.1
Q ss_pred ccCCCCccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHH
Q 020371 60 SEFRWWDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVD 139 (327)
Q Consensus 60 ~~~~~~s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~ 139 (327)
....-+++|+++||+++-..+.+...|++++|++|||.+.|.+. ..+ .+++|..+|+.|.+.++..++|+.+.+
T Consensus 12 ~~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn----~~l--~~~qy~kv~~~D~p~~~l~~hfD~vAD 85 (198)
T KOG1718|consen 12 PSIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPN----TSL--PDIQYMKVPLEDTPQARLYDHFDPVAD 85 (198)
T ss_pred CCccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCC----ccC--CCceeEEEEcccCCcchhhhhhhHHHH
Confidence 34566799999999997777788889999999999999988442 222 468999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhhc
Q 020371 140 FIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQKVKKI 217 (327)
Q Consensus 140 ~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~~~~~~~ 217 (327)
.|+.....||++||||.+|++||+++|.||| ||+.+|++.+|+.+++++||.+.||.+||+||..|++++..+.
T Consensus 86 ~I~~v~~~gG~TLvHC~AGVSRSAsLClAYL----mK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 86 KIHSVIMRGGKTLVHCVAGVSRSASLCLAYL----MKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred HHHHHHhcCCcEEEEEccccchhHHHHHHHH----HHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999996655443
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=1.4e-27 Score=199.52 Aligned_cols=132 Identities=35% Similarity=0.527 Sum_probs=121.9
Q ss_pred EEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeE
Q 020371 72 IILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTT 151 (327)
Q Consensus 72 LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~V 151 (327)
||+|+.+.+. ...|+++||++|||++.+.+.. ..+...++.|+++|+.|....+....+..+++||+++..++++|
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 76 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKV 76 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhccccee
Confidence 7999999999 9999999999999999885431 34456789999999999667888899999999999999999999
Q ss_pred EEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHH
Q 020371 152 YVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYL 211 (327)
Q Consensus 152 LVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~ 211 (327)
||||.+|.||||++++||| |...+|++++|+++++++||.+.+++.|+++|.+|++
T Consensus 77 lVHC~~G~~RS~~v~~ayL----m~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 77 LVHCKAGLSRSGAVAAAYL----MKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp EEEESSSSSHHHHHHHHHH----HHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccchHHHHHHH----HHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 9999999999999999999 9999999999999999999999999999999999984
No 7
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=1.4e-24 Score=189.62 Aligned_cols=145 Identities=25% Similarity=0.291 Sum_probs=125.8
Q ss_pred ccCCCCccccCcEEEcCCCCccC----HHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHH
Q 020371 60 SEFRWWDRVDQFIILGAVPFPAD----VLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADIC 135 (327)
Q Consensus 60 ~~~~~~s~I~~~LylG~~p~~~~----~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~ 135 (327)
+.-+..+.|...++.-..|.... ++.|+++||++||+++++. ++.+.+...|+.|+++|+.|. .+|+.+.+.
T Consensus 6 ~~~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~---~~~~~~~~~gi~~~~~p~~D~-~~P~~~~i~ 81 (166)
T PTZ00242 6 CKDRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT---YDAELLEKNGIEVHDWPFDDG-APPPKAVID 81 (166)
T ss_pred CCCcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC---CCHHHHHHCCCEEEecCCCCC-CCCCHHHHH
Confidence 34556678889999999999854 4888999999999998763 344566778999999999997 688888999
Q ss_pred HHHHHHHHHHhC----CCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHH
Q 020371 136 QAVDFIHENASL----GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYL 211 (327)
Q Consensus 136 ~av~~I~~~~~~----~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~ 211 (327)
++++++++.+.. |++|+|||.+|+|||||+++||| |+..++++.+|++++|++||.++ ++.|+.+|.+|.+
T Consensus 82 ~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL----~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~ 156 (166)
T PTZ00242 82 NWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALAL----VEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKP 156 (166)
T ss_pred HHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHH----HHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHH
Confidence 999999987754 89999999999999999999999 98888999999999999999985 7999999999995
Q ss_pred Hh
Q 020371 212 QK 213 (327)
Q Consensus 212 ~~ 213 (327)
..
T Consensus 157 ~~ 158 (166)
T PTZ00242 157 RK 158 (166)
T ss_pred Hh
Confidence 43
No 8
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.92 E-value=8.9e-25 Score=198.40 Aligned_cols=145 Identities=19% Similarity=0.231 Sum_probs=132.6
Q ss_pred CccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHH
Q 020371 65 WDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHEN 144 (327)
Q Consensus 65 ~s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~ 144 (327)
+-+|+|+||+|+...+++.+.|+++||++|||++...+ ..+-....+.|..||+.|+...+....|.+|+.||+++
T Consensus 172 PV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlp----n~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeA 247 (343)
T KOG1717|consen 172 PVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLP----NNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEA 247 (343)
T ss_pred chhhccchhcccccccccHHHHHhcCceEEEecCCCCc----chhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHh
Confidence 45899999999999999999999999999999987643 33334456899999999998788888999999999999
Q ss_pred HhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhhc
Q 020371 145 ASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQKVKKI 217 (327)
Q Consensus 145 ~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~~~~~~~ 217 (327)
+.++..|||||-+|++||.|+++||| |+....++.+|+.+|+.++.++.||..|+-||..|++.+..++
T Consensus 248 rsk~cgvLVHClaGISRSvTvtvaYL----Mqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s 316 (343)
T KOG1717|consen 248 RSKNCGVLVHCLAGISRSVTVTVAYL----MQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLES 316 (343)
T ss_pred hccCCcEEEeeeccccchhHHHHHHH----HHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccC
Confidence 99999999999999999999999999 9999999999999999999999999999999999998776655
No 9
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.92 E-value=4.5e-24 Score=201.48 Aligned_cols=149 Identities=26% Similarity=0.361 Sum_probs=134.2
Q ss_pred CCCccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHH
Q 020371 63 RWWDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIH 142 (327)
Q Consensus 63 ~~~s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~ 142 (327)
...+.|.|++|+|+...+.+.+.|+++||++|+|+....+... .....+++|+.+|..|....+...+|.++++||+
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~ 149 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIE 149 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCccccHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999988744321 1122389999999999988888999999999999
Q ss_pred HHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhhcC
Q 020371 143 ENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQKVKKIG 218 (327)
Q Consensus 143 ~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~~~~~~~~ 218 (327)
.+..+++.|||||.+|++||+|+++||| |++.+|++++|+++|+.+||.+.||.+++.||.+|++....+..
T Consensus 150 ~a~~~~~~vlVHC~~GvSRSat~viAYl----M~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~ 221 (285)
T KOG1716|consen 150 KAREKGGKVLVHCQAGVSRSATLVIAYL----MKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSP 221 (285)
T ss_pred HHHhCCCeEEEEcCCccchhHHHHHHHH----HHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCc
Confidence 9999999999999999999999999999 99999999999999999999999999999999999977766653
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=8.4e-24 Score=192.18 Aligned_cols=143 Identities=20% Similarity=0.246 Sum_probs=122.8
Q ss_pred CCCCccccCc---EEEcCCCCcc----CHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHH
Q 020371 62 FRWWDRVDQF---IILGAVPFPA----DVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADI 134 (327)
Q Consensus 62 ~~~~s~I~~~---LylG~~p~~~----~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~ 134 (327)
++.+.+|.-+ +.+-..|... .++.|+++||++||+++++. ++.+.++..||+|+++|+.|+ .+|+.+.+
T Consensus 81 ~~~~~~ie~~~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~---Yd~~~~~~~GI~~~~lpipDg-~aPs~~~i 156 (241)
T PTZ00393 81 LNHPTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERT---YNDGEITSAGINVHELIFPDG-DAPTVDIV 156 (241)
T ss_pred cccchhhccCceeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---CCHHHHHHcCCeEEEeecCCC-CCCCHHHH
Confidence 3445555443 6677778764 44889999999999998763 455677889999999999998 78888999
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhh
Q 020371 135 CQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQKV 214 (327)
Q Consensus 135 ~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~~~~ 214 (327)
.++++++++....|++|+|||++|.||||++++||| |. .|+++++|+++||++||+++ +..|+++|++|++...
T Consensus 157 ~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayL----I~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 157 SNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVL----IE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKK 230 (241)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH----HH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcc
Confidence 999999999988899999999999999999999999 87 79999999999999999995 8999999999996543
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.87 E-value=1.6e-21 Score=172.16 Aligned_cols=124 Identities=27% Similarity=0.387 Sum_probs=113.7
Q ss_pred HHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchH
Q 020371 84 LRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRST 163 (327)
Q Consensus 84 ~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSg 163 (327)
..++.+++++++.|+.. .++.+.+...||.++++|+.|. .+|+.+.+.++++.++.+.+ +++|.|||++|.||||
T Consensus 88 ~~~~~~~v~s~vrln~~---~yd~~~f~~~Gi~h~~l~f~Dg-~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG 162 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKR---LYDAKRFTDAGIDHHDLFFADG-STPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTG 162 (225)
T ss_pred HHhhhcccceEEEcCCC---CCChHHhcccCceeeeeecCCC-CCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchh
Confidence 45678999999999887 4567788899999999999998 78999999999999999998 8999999999999999
Q ss_pred HHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhh
Q 020371 164 TIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQKVKK 216 (327)
Q Consensus 164 tvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~~~~~~ 216 (327)
|+++||| |+..++|+.+|+++||.+||+++.+++|...+.++..++...
T Consensus 163 ~liAc~l----my~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~~~~~ 211 (225)
T KOG1720|consen 163 TLIACYL----MYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDLWLAG 211 (225)
T ss_pred HHHHHHH----HHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhhh
Confidence 9999999 999999999999999999999999999999999999764443
No 12
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.77 E-value=8.5e-19 Score=152.79 Aligned_cols=139 Identities=17% Similarity=0.235 Sum_probs=90.4
Q ss_pred CCccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCC---CCcHHHHHHHHHH
Q 020371 64 WWDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLF---APSFADICQAVDF 140 (327)
Q Consensus 64 ~~s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~---~p~~~~~~~av~~ 140 (327)
.|..|.++||+|++|.+.++++|+++|+++||+|+.+........+.+..||+++++++..... ....+.+.++++.
T Consensus 6 nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ 85 (164)
T PF03162_consen 6 NFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEI 85 (164)
T ss_dssp T-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHH
T ss_pred cccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHH
Confidence 4688999999999999999999999999999999977432222235578999999999987532 2456788888888
Q ss_pred HHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHH
Q 020371 141 IHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYY 210 (327)
Q Consensus 141 I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~ 210 (327)
|.+.. +.||||||.+|.+|||++++||. +.+||+..+|++.++.--.. ..+..-.++++.|.
T Consensus 86 ild~~--n~PvLiHC~~G~~rTG~vvg~lR-----k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~ 147 (164)
T PF03162_consen 86 ILDPR--NYPVLIHCNHGKDRTGLVVGCLR-----KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFD 147 (164)
T ss_dssp HH-GG--G-SEEEE-SSSSSHHHHHHHHHH-----HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT--
T ss_pred HhCCC--CCCEEEEeCCCCcchhhHHHHHH-----HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcC
Confidence 76553 48999999999999999999998 45899999999887754322 34566666777776
No 13
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.69 E-value=3.6e-16 Score=138.23 Aligned_cols=99 Identities=30% Similarity=0.417 Sum_probs=86.3
Q ss_pred cccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHHHHHH
Q 020371 110 YHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEAAYEY 188 (327)
Q Consensus 110 ~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~A~~~ 188 (327)
....++.++++|+.|+ ..|+..++.+++++|+.+.++|++|+|||.+|+|||||+++||| |.+.+ +..++|+..
T Consensus 68 ~~~~~~~~~~~~~~D~-~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~l----m~~~~~~~~~~~i~~ 142 (180)
T COG2453 68 EENDGIQVLHLPILDG-TVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYL----MLYGGLSLADEAIAV 142 (180)
T ss_pred eccCCceeeeeeecCC-CCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHH----HHHcCCCCHHHHHHH
Confidence 3457899999999998 78888999999999999999999999999999999999999999 88845 888888888
Q ss_pred HHhhCCCCcCCHHHHHHHHHHHHHh
Q 020371 189 VRSIRPRVLLASSQWQAVQDYYLQK 213 (327)
Q Consensus 189 vr~~Rp~v~~n~~q~~~L~~~~~~~ 213 (327)
++.+||..+....|..+..++...+
T Consensus 143 ~~~~r~~~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 143 KRRRRPGAVVTEIQHLFELEQELFR 167 (180)
T ss_pred HHhcCCcccccHHHHHHHHHHHHHH
Confidence 9999987777887777777766443
No 14
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.65 E-value=2.6e-16 Score=135.85 Aligned_cols=112 Identities=34% Similarity=0.502 Sum_probs=76.0
Q ss_pred cEEEcCCCC----------ccCHHHHHhcCCeEEEEeccCCccc---CC--ccccccCCcEEEEEecCCCCCCCcHHHHH
Q 020371 71 FIILGAVPF----------PADVLRLKELGVSGVVTLNESYETL---VP--TSLYHDHNIDHLVIPTRDYLFAPSFADIC 135 (327)
Q Consensus 71 ~LylG~~p~----------~~~~~~L~~~gI~~VInL~~e~e~~---~~--~~~~~~~gi~y~~ip~~D~~~~p~~~~~~ 135 (327)
.|.++..|- .+|++.|+..|++.||++++..|.. .+ ...++..|+.++++|+.|. .+|+.+.+.
T Consensus 42 ~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~-~aPd~~~~~ 120 (168)
T PF05706_consen 42 FLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDG-SAPDFAAAW 120 (168)
T ss_dssp EEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TT-S---HHHHH
T ss_pred eeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCC-CCCCHHHHH
Confidence 456666665 3577899999999999998776541 12 2467889999999999998 577888888
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHH
Q 020371 136 QAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAY 186 (327)
Q Consensus 136 ~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~ 186 (327)
+++..|...+.+|++|+|||+.|.||||+|++|+|+.++ ..+++++|+
T Consensus 121 ~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~---~~~~p~~AI 168 (168)
T PF05706_consen 121 QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELG---DTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH----SSS-HHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc---CCCChhhcC
Confidence 889999999999999999999999999999999995433 569999986
No 15
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.58 E-value=3.4e-14 Score=117.71 Aligned_cols=129 Identities=27% Similarity=0.330 Sum_probs=104.5
Q ss_pred EEEcCCCCccC----HHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhC
Q 020371 72 IILGAVPFPAD----VLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASL 147 (327)
Q Consensus 72 LylG~~p~~~~----~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~ 147 (327)
..+..-|+... .+.|+++|+++||.+|++. ++....+..||..+.||+.|. .+|..+.++.....+.-...+
T Consensus 19 FLIThnPtnaTln~fieELkKygvttvVRVCe~T---Ydt~~lek~GI~Vldw~f~dg-~ppp~qvv~~w~~l~~~~f~e 94 (173)
T KOG2836|consen 19 FLITHNPTNATLNKFIEELKKYGVTTVVRVCEPT---YDTTPLEKEGITVLDWPFDDG-APPPNQVVDDWLSLVKTKFRE 94 (173)
T ss_pred EEEecCCCchhHHHHHHHHHhcCCeEEEEecccc---cCCchhhhcCceEeecccccC-CCCchHHHHHHHHHHHHHHhh
Confidence 34555565433 4688999999999999884 455556789999999999997 566667777777765544433
Q ss_pred --CCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHH
Q 020371 148 --GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYY 210 (327)
Q Consensus 148 --~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~ 210 (327)
|..|.|||.+|.||.+.+++.-| +. .||..++|++++|.+|.++ .|..|..+|.+|-
T Consensus 95 ~p~~cvavhcvaglgrapvlvalal----ie-~gmkyedave~ir~krrga-~n~kql~~lekyr 153 (173)
T KOG2836|consen 95 EPGCCVAVHCVAGLGRAPVLVALAL----IE-AGMKYEDAVEMIRQKRRGA-INSKQLLYLEKYR 153 (173)
T ss_pred CCCCeEEEEeecccCcchHHHHHHH----HH-ccccHHHHHHHHHHHhhcc-ccHHHHHHHHHhC
Confidence 68899999999999999999988 44 6888999999999999877 7999999999987
No 16
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.58 E-value=2.5e-14 Score=120.79 Aligned_cols=118 Identities=13% Similarity=0.089 Sum_probs=93.9
Q ss_pred ccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccC-Ccc-----ccccCCcEEEEEecCCCCCCCcHHHHHHHHH
Q 020371 66 DRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLV-PTS-----LYHDHNIDHLVIPTRDYLFAPSFADICQAVD 139 (327)
Q Consensus 66 s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~-~~~-----~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~ 139 (327)
.+|++.+|+++.+++.+++.|+++||++|||+....|... +.. .....|+.|+++|+... ..+.+.+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 5789999999999999999999999999999987655322 211 12347999999998864 356667777777
Q ss_pred HHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCC
Q 020371 140 FIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRP 194 (327)
Q Consensus 140 ~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp 194 (327)
+++. ..+|||+||++|. ||+.+.+.++ .. .|++.+++++..+...-
T Consensus 81 ~~~~---~~~pvL~HC~sG~-Rt~~l~al~~----~~-~g~~~~~i~~~~~~~G~ 126 (135)
T TIGR01244 81 AIGA---AEGPVLAYCRSGT-RSSLLWGFRQ----AA-EGVPVEEIVRRAQAAGY 126 (135)
T ss_pred HHHh---CCCCEEEEcCCCh-HHHHHHHHHH----HH-cCCCHHHHHHHHHHcCC
Confidence 7763 3589999999999 9999887766 44 78999999999887653
No 17
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.47 E-value=5.5e-13 Score=105.41 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=73.8
Q ss_pred EEEecCCCCCCCcHHHHHHHHHHHHHHHh---CCCeEEEEcCCCCCchHHHHHHHHhhhhhhhc--CCCHHHHHHHHHhh
Q 020371 118 LVIPTRDYLFAPSFADICQAVDFIHENAS---LGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHR--QMAPEAAYEYVRSI 192 (327)
Q Consensus 118 ~~ip~~D~~~~p~~~~~~~av~~I~~~~~---~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~--~~s~~~A~~~vr~~ 192 (327)
+..++.|...+...+.+.++++.+++... .++||+|||.+|.||||+++++|++..++... ..++.+++..+|.+
T Consensus 6 ~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 85 (105)
T smart00012 6 HYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQ 85 (105)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 33344455344455788888888887764 26899999999999999999999976665543 38999999999999
Q ss_pred CCCCcCCHHHHHHHHHHH
Q 020371 193 RPRVLLASSQWQAVQDYY 210 (327)
Q Consensus 193 Rp~v~~n~~q~~~L~~~~ 210 (327)
||+...+..|+.+++..-
T Consensus 86 r~~~~~~~~q~~~~~~~~ 103 (105)
T smart00012 86 RPGMVQTFEQYLFLYRAL 103 (105)
T ss_pred hhhhCCcHHHHHHHHHHH
Confidence 999999999999987653
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.47 E-value=5.5e-13 Score=105.41 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=73.8
Q ss_pred EEEecCCCCCCCcHHHHHHHHHHHHHHHh---CCCeEEEEcCCCCCchHHHHHHHHhhhhhhhc--CCCHHHHHHHHHhh
Q 020371 118 LVIPTRDYLFAPSFADICQAVDFIHENAS---LGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHR--QMAPEAAYEYVRSI 192 (327)
Q Consensus 118 ~~ip~~D~~~~p~~~~~~~av~~I~~~~~---~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~--~~s~~~A~~~vr~~ 192 (327)
+..++.|...+...+.+.++++.+++... .++||+|||.+|.||||+++++|++..++... ..++.+++..+|.+
T Consensus 6 ~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 85 (105)
T smart00404 6 HYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQ 85 (105)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 33344455344455788888888887764 26899999999999999999999976665543 38999999999999
Q ss_pred CCCCcCCHHHHHHHHHHH
Q 020371 193 RPRVLLASSQWQAVQDYY 210 (327)
Q Consensus 193 Rp~v~~n~~q~~~L~~~~ 210 (327)
||+...+..|+.+++..-
T Consensus 86 r~~~~~~~~q~~~~~~~~ 103 (105)
T smart00404 86 RPGMVQTFEQYLFLYRAL 103 (105)
T ss_pred hhhhCCcHHHHHHHHHHH
Confidence 999999999999987653
No 19
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.40 E-value=7e-13 Score=108.18 Aligned_cols=97 Identities=20% Similarity=0.301 Sum_probs=65.6
Q ss_pred ccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccC-Cc-----cccccCCcEEEEEecCCCCCCCcHHHHHHHHH
Q 020371 66 DRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLV-PT-----SLYHDHNIDHLVIPTRDYLFAPSFADICQAVD 139 (327)
Q Consensus 66 s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~-~~-----~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~ 139 (327)
.+|.+.+++++++.+.+++.|++.|+++|||++...|... +. ...+..|+.|+++|+... .++.+++..+.+
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFAD 80 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHHH
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 5789999999999999999999999999999986654321 11 244678999999999974 567788888877
Q ss_pred HHHHHHhCCCeEEEEcCCCCCchHHHHHH
Q 020371 140 FIHENASLGKTTYVHCKAGRGRSTTIVLC 168 (327)
Q Consensus 140 ~I~~~~~~~~~VLVHC~~G~gRSgtvv~a 168 (327)
.+++. ++|||+||+.|. |++++.+.
T Consensus 81 ~l~~~---~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 81 ALESL---PKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHTT---TTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHhC---CCCEEEECCCCh-hHHHHHHH
Confidence 77764 589999999998 98876543
No 20
>PLN02727 NAD kinase
Probab=99.35 E-value=3.8e-12 Score=133.53 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=82.2
Q ss_pred cEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCC-----ccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 020371 71 FIILGAVPFPADVLRLKELGVSGVVTLNESYETLVP-----TSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENA 145 (327)
Q Consensus 71 ~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~-----~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~ 145 (327)
.+|++++|.+.+++.|.+.||++|||++.+.+...+ ....+..|++|+++|+.+. .+|+.+++.++.+++++..
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHhhc
Confidence 489999999999999999999999999887652111 1123457999999999876 6889999999999995532
Q ss_pred hCCCeEEEEcCCCCCchHHHHHHHHh
Q 020371 146 SLGKTTYVHCKAGRGRSTTIVLCYLF 171 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtvv~ayLl 171 (327)
++|||+||+.|.+|||+|++||+.
T Consensus 341 --pkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 341 --KKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred --CCCEEEECCCCCchHHHHHHHHHH
Confidence 699999999999999999999993
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.32 E-value=1.2e-11 Score=112.65 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=74.8
Q ss_pred cEEEEEe-cCCCCCCCcHHHHHHHHHHHHHHHh--CCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHHHHHHHH
Q 020371 115 IDHLVIP-TRDYLFAPSFADICQAVDFIHENAS--LGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEAAYEYVR 190 (327)
Q Consensus 115 i~y~~ip-~~D~~~~p~~~~~~~av~~I~~~~~--~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~A~~~vr 190 (327)
+.++++. +.|...++....+.+++..+++... .++||+|||.+|.||||++++++++..++...+ +++.+++..+|
T Consensus 130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred EEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4444443 3455445555778888888777653 368999999999999999999998665554444 99999999999
Q ss_pred hhCCCCcCCHHHHHHHHHH
Q 020371 191 SIRPRVLLASSQWQAVQDY 209 (327)
Q Consensus 191 ~~Rp~v~~n~~q~~~L~~~ 209 (327)
.+||.++.++.|+.+++..
T Consensus 210 ~~R~~~v~~~~Qy~f~~~~ 228 (231)
T cd00047 210 SQRPGMVQTEEQYIFLYRA 228 (231)
T ss_pred hccccccCCHHHHHHHHHH
Confidence 9999999999999999864
No 22
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.31 E-value=1.3e-11 Score=114.55 Aligned_cols=87 Identities=23% Similarity=0.247 Sum_probs=71.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHHHHHHHHhhCCCCcCCH
Q 020371 123 RDYLFAPSFADICQAVDFIHENASL-GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEAAYEYVRSIRPRVLLAS 200 (327)
Q Consensus 123 ~D~~~~p~~~~~~~av~~I~~~~~~-~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~A~~~vr~~Rp~v~~n~ 200 (327)
.|...+.....+.+++..++..... ++||+|||.+|.||||++++++++..++...+ .++.+++..+|.+||+++.++
T Consensus 167 ~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~ 246 (258)
T smart00194 167 PDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTE 246 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCH
Confidence 4554444667778777777776553 68999999999999999999999666555444 899999999999999999999
Q ss_pred HHHHHHHHH
Q 020371 201 SQWQAVQDY 209 (327)
Q Consensus 201 ~q~~~L~~~ 209 (327)
.|+.+++..
T Consensus 247 ~Qy~f~~~~ 255 (258)
T smart00194 247 EQYIFLYRA 255 (258)
T ss_pred HHHHHHHHH
Confidence 999998764
No 23
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.30 E-value=1.3e-11 Score=111.56 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=94.5
Q ss_pred CccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCC---C---C-cHHHHHHH
Q 020371 65 WDRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLF---A---P-SFADICQA 137 (327)
Q Consensus 65 ~s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~---~---p-~~~~~~~a 137 (327)
|+.|+++||.|++|.+.++.+|+.+++++||.|+.+........+++.++|++++|.+...-. . + ..+.+..+
T Consensus 60 Fs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~ 139 (249)
T KOG1572|consen 60 FSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKA 139 (249)
T ss_pred ccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHH
Confidence 355688999999999999999999999999999988522222337788999999999976531 1 2 23456777
Q ss_pred HHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhC
Q 020371 138 VDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIR 193 (327)
Q Consensus 138 v~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~R 193 (327)
++++-.. .+.|+||||..|..|||++|.|.. +-++|++...+...+..-
T Consensus 140 l~~lld~--~N~P~Lihc~rGkhRtg~lVgclR-----klq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 140 LKVLLDK--RNYPILIHCKRGKHRTGCLVGCLR-----KLQNWSLSSILDEYLRFA 188 (249)
T ss_pred HHHHhcc--cCCceEEecCCCCcchhhhHHHHH-----HHhccchhHHHHHHHHhc
Confidence 7764332 368999999999999999999977 557899999987554443
No 24
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.22 E-value=4.8e-11 Score=114.28 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=73.3
Q ss_pred cEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh-----------CCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCH
Q 020371 115 IDHLVIPTRDYLFAPSFADICQAVDFIHENAS-----------LGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAP 182 (327)
Q Consensus 115 i~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~-----------~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~ 182 (327)
+.|..|| |++.+.+...|.+++..++.... ..+||+|||.+|.|||||++++...+.++...+ .++
T Consensus 187 ~~y~~Wp--d~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v 264 (312)
T PHA02747 187 FQCSEWF--EDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICL 264 (312)
T ss_pred EEECCCC--CCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCH
Confidence 4444555 55445556667666666654422 127999999999999999999988766666555 899
Q ss_pred HHHHHHHHhhCCCCcCCHHHHHHH---HHHHHHh
Q 020371 183 EAAYEYVRSIRPRVLLASSQWQAV---QDYYLQK 213 (327)
Q Consensus 183 ~~A~~~vr~~Rp~v~~n~~q~~~L---~~~~~~~ 213 (327)
.+++..+|.+|+.++.+..|+.++ ++.-..+
T Consensus 265 ~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~ 298 (312)
T PHA02747 265 AKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYF 298 (312)
T ss_pred HHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 6654333
No 25
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=99.19 E-value=4.8e-11 Score=115.74 Aligned_cols=129 Identities=18% Similarity=0.187 Sum_probs=88.4
Q ss_pred CHHHHHhcCCeEEEEeccCCcccCC------cccc----ccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh---CC
Q 020371 82 DVLRLKELGVSGVVTLNESYETLVP------TSLY----HDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENAS---LG 148 (327)
Q Consensus 82 ~~~~L~~~gI~~VInL~~e~e~~~~------~~~~----~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~---~~ 148 (327)
+...++.+|+-.|=|+.+..-..+. ...+ ...-.+|+.+-+.|++.+...--+..+++-++.... .-
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~A 451 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDA 451 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhcccccc
Confidence 3445677888888877553211000 0011 111134555555577555555555555555554322 24
Q ss_pred CeEEEEcCCCCCchHHHHHHHHhhhhhhhcC----CCHHHHHHHHHhhCCCCcCCHHHHHHHHHHH
Q 020371 149 KTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ----MAPEAAYEYVRSIRPRVLLASSQWQAVQDYY 210 (327)
Q Consensus 149 ~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~----~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~ 210 (327)
+||.|||.+|+|||||++..-+|..+++..| +++...+++||++|.+++.+..|++|++.--
T Consensus 452 gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Av 517 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAV 517 (600)
T ss_pred CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHH
Confidence 7999999999999999998888888888877 6888999999999999999999999998544
No 26
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.19 E-value=2.1e-10 Score=109.16 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=74.5
Q ss_pred cEEEEEecCCCCCCCcHHHHHHHHHHHHHHH---------hCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHH
Q 020371 115 IDHLVIPTRDYLFAPSFADICQAVDFIHENA---------SLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEA 184 (327)
Q Consensus 115 i~y~~ip~~D~~~~p~~~~~~~av~~I~~~~---------~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~ 184 (327)
++|..|| |++.+.....|.+++..+++.. ...+||+|||.+|+|||||++++.....++...+ .++.+
T Consensus 181 fqyt~WP--d~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~ 258 (298)
T PHA02740 181 FQYTAWP--ADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIAN 258 (298)
T ss_pred EeecCCC--CCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHH
Confidence 3444555 5545556666666665555431 1247999999999999999999988777776666 89999
Q ss_pred HHHHHHhhCCCCcCCHHHHHHHHHHHHHh
Q 020371 185 AYEYVRSIRPRVLLASSQWQAVQDYYLQK 213 (327)
Q Consensus 185 A~~~vr~~Rp~v~~n~~q~~~L~~~~~~~ 213 (327)
++..+|.+|+.++.+.+|+.++++--..+
T Consensus 259 ~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y 287 (298)
T PHA02740 259 ALKKVRQKKYGCMNCLDDYVFCYHLIAAY 287 (298)
T ss_pred HHHHHHhhCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998755333
No 27
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.18 E-value=2e-10 Score=109.63 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=73.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHh------------CCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHHHHHHH
Q 020371 123 RDYLFAPSFADICQAVDFIHENAS------------LGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEAAYEYV 189 (327)
Q Consensus 123 ~D~~~~p~~~~~~~av~~I~~~~~------------~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~A~~~v 189 (327)
.|++.+.+...|.+++..+++... ..+||+|||.+|+|||||++++..++.++...+ .++.+++..+
T Consensus 192 pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~l 271 (303)
T PHA02742 192 PHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDL 271 (303)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 466555566777777776665321 137999999999999999999988777776555 7999999999
Q ss_pred HhhCCCCcCCHHHHHHHHHHHHHhhh
Q 020371 190 RSIRPRVLLASSQWQAVQDYYLQKVK 215 (327)
Q Consensus 190 r~~Rp~v~~n~~q~~~L~~~~~~~~~ 215 (327)
|.+|+.++.+..|+.++++.-..+.+
T Consensus 272 R~qR~~~Vqt~~QY~F~y~~l~~y~~ 297 (303)
T PHA02742 272 RKQRHNCLSLPQQYIFCYFIVLIFAK 297 (303)
T ss_pred HhhcccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999876644444
No 28
>PHA02738 hypothetical protein; Provisional
Probab=99.18 E-value=6.4e-11 Score=113.80 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=74.4
Q ss_pred cEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh--------------CCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-
Q 020371 115 IDHLVIPTRDYLFAPSFADICQAVDFIHENAS--------------LGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ- 179 (327)
Q Consensus 115 i~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~--------------~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~- 179 (327)
+.|..|| |++.+.+...|.+++..+++... ..+||+|||.+|.|||||+++...++.++...+
T Consensus 182 ~~y~~Wp--d~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~ 259 (320)
T PHA02738 182 FNFTAWP--DHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACAT 259 (320)
T ss_pred EEECCCC--CCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCC
Confidence 4445555 55455566677767666665321 136999999999999999999988777776555
Q ss_pred CCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHh
Q 020371 180 MAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQK 213 (327)
Q Consensus 180 ~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~~~ 213 (327)
.++.+++..+|.+|+.++.+..|+.++++--..+
T Consensus 260 vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y 293 (320)
T PHA02738 260 VSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRY 293 (320)
T ss_pred cCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988755433
No 29
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.16 E-value=2.1e-10 Score=114.11 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=71.5
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHhC----------CCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHHHHHHHH
Q 020371 122 TRDYLFAPSFADICQAVDFIHENASL----------GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEAAYEYVR 190 (327)
Q Consensus 122 ~~D~~~~p~~~~~~~av~~I~~~~~~----------~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~A~~~vr 190 (327)
++|+..++....+..+++.++..... ++| +|||++|+|||||+|++++ ++..+ .++++.+..+|
T Consensus 431 WPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~P-VVHCSAGVGRTGTFIAi~l----lk~~~~~sle~IV~dlR 505 (535)
T PRK15375 431 WPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLP-MIHCLGGVGRTGTMAAALV----LKDNPHSNLEQVRADFR 505 (535)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCc-eEEcCCCCchHHHHHHHHH----HhccccCCHHHHHHHHH
Confidence 46775666666677777777765322 234 7999999999999999999 76545 89999999999
Q ss_pred hhCCC-CcCCHHHHHHHHHHHHHhh
Q 020371 191 SIRPR-VLLASSQWQAVQDYYLQKV 214 (327)
Q Consensus 191 ~~Rp~-v~~n~~q~~~L~~~~~~~~ 214 (327)
..|++ ++.+.+|+.+|++...++.
T Consensus 506 ~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 506 NSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred hcCCccccccHHHHHHHHHHHHHHh
Confidence 99998 9999999999999985544
No 30
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.12 E-value=3.7e-10 Score=108.65 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=73.3
Q ss_pred EEEEEecCCCCCCCcHHHHHHHHHHHHHHHh-------C----CCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHH
Q 020371 116 DHLVIPTRDYLFAPSFADICQAVDFIHENAS-------L----GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPE 183 (327)
Q Consensus 116 ~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~-------~----~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~ 183 (327)
+|..|| |++.+.....|.+++..+++... . .+||+|||.+|+||||++|++..+..+++..+ .++.
T Consensus 206 ~y~~Wp--d~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~ 283 (323)
T PHA02746 206 WFPDWP--DNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLG 283 (323)
T ss_pred EECCCC--CCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHH
Confidence 344444 55455556677777766665431 1 27999999999999999999888766666555 9999
Q ss_pred HHHHHHHhhCCCCcCCHHHHHHHHHHHH
Q 020371 184 AAYEYVRSIRPRVLLASSQWQAVQDYYL 211 (327)
Q Consensus 184 ~A~~~vr~~Rp~v~~n~~q~~~L~~~~~ 211 (327)
+++..+|.+|++++.+..|+.++++.-.
T Consensus 284 ~~V~~lR~qR~~~Vqt~~QY~F~y~~l~ 311 (323)
T PHA02746 284 EIVLKIRKQRHSSVFLPEQYAFCYKALK 311 (323)
T ss_pred HHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999987653
No 31
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.11 E-value=2.4e-10 Score=99.32 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=60.4
Q ss_pred cccCc-EEEcCCCCc---cCHHHHHhcCCeEEEEeccCCcccC-CccccccCCcEEEEEecCCCCCCC---c--------
Q 020371 67 RVDQF-IILGAVPFP---ADVLRLKELGVSGVVTLNESYETLV-PTSLYHDHNIDHLVIPTRDYLFAP---S-------- 130 (327)
Q Consensus 67 ~I~~~-LylG~~p~~---~~~~~L~~~gI~~VInL~~e~e~~~-~~~~~~~~gi~y~~ip~~D~~~~p---~-------- 130 (327)
.|-++ ||+++.+.. .+...|.++||++||||..+.|... |.. ...|+.|+++|+.+..... .
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~--~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 92 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDP--LIDGVQYVHIPIFGDDASSPDKLAELLQSSA 92 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS------TT-EEEE--SS-S-TTH----------HH
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCC--CcCCceeeeeccccccccccccccccccccc
Confidence 35556 999999874 6778999999999999998866422 222 2348999999998753220 0
Q ss_pred -----------------HHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHH
Q 020371 131 -----------------FADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYE 187 (327)
Q Consensus 131 -----------------~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~ 187 (327)
.+.+.++++. .....+|+|+||++|+.|||.+++..| .-.|++.+++++
T Consensus 93 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~---l~~~~~p~l~HC~aGKDRTG~~~alll-----~~lGV~~~~I~~ 158 (164)
T PF13350_consen 93 DAPRGMLEFYREMLESYAEAYRKIFEL---LADAPGPVLFHCTAGKDRTGVVAALLL-----SLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHHHHGGGSTHHHHHHHHHH---HH-TT--EEEE-SSSSSHHHHHHHHHH-----HHTT--HHHHHH
T ss_pred chhhHHHHHHHHHHHhhhHHHHHHHHH---hccCCCcEEEECCCCCccHHHHHHHHH-----HHcCCCHHHHHH
Confidence 0111112222 222357999999999999999888777 336777777664
No 32
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=99.11 E-value=2.3e-10 Score=120.54 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=81.6
Q ss_pred CcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcCCCCCchHHHHHHHHhhhhhhh-cCCCHHHHHHHHHh
Q 020371 114 NIDHLVIPTRDYLFAPSFADICQAVDFIHENASL-GKTTYVHCKAGRGRSTTIVLCYLFSLQVEH-RQMAPEAAYEYVRS 191 (327)
Q Consensus 114 gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~-~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~-~~~s~~~A~~~vr~ 191 (327)
.++|..|| |++.+.+.++|.++++.|+..+.. +.||+|||.+|+||||+++++-++..=+.. ..+.+-+.+..+|.
T Consensus 1030 hLQYtaWP--DHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~ 1107 (1144)
T KOG0792|consen 1030 HLQYTAWP--DHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRD 1107 (1144)
T ss_pred eeeecccc--cCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 46787888 444677888999999998888776 679999999999999998865442221432 33899999999999
Q ss_pred hCCCCcCCHHHHHHHHHHHHHhhhhc
Q 020371 192 IRPRVLLASSQWQAVQDYYLQKVKKI 217 (327)
Q Consensus 192 ~Rp~v~~n~~q~~~L~~~~~~~~~~~ 217 (327)
+|..++++.+||+|+++--....++.
T Consensus 1108 QR~~mVQT~~QYkFVyevil~~l~~~ 1133 (1144)
T KOG0792|consen 1108 QRAMMVQTLSQYKFVYEVILRVLKRG 1133 (1144)
T ss_pred HHhhhccchHHhhHHHHHHHHHHHhc
Confidence 99999999999999998775555544
No 33
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.10 E-value=2.7e-10 Score=112.95 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=107.2
Q ss_pred CccccCcEEEcCCCCccCHH-----------HHHh--cCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcH
Q 020371 65 WDRVDQFIILGAVPFPADVL-----------RLKE--LGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSF 131 (327)
Q Consensus 65 ~s~I~~~LylG~~p~~~~~~-----------~L~~--~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~ 131 (327)
.+-|+++|...++|...... +|.. .|==.|.||+.+ ..++...+. -+...+++.|+ .+|.+
T Consensus 15 ltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~e--r~yd~~~f~---g~V~~~~~~Dh-~~P~L 88 (434)
T KOG2283|consen 15 LTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSE--RLYDPSRFH---GRVARFGFDDH-NPPPL 88 (434)
T ss_pred ceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCcc--ccCCccccc---cceeecCCCCC-CCCcH
Confidence 36689999999999863222 2221 233358888863 233433332 24556899998 79999
Q ss_pred HHHHHHHHHHHHHHhC--CCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHHHHHHHHhhC---C--CCcCCHHHH
Q 020371 132 ADICQAVDFIHENASL--GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEAAYEYVRSIR---P--RVLLASSQW 203 (327)
Q Consensus 132 ~~~~~av~~I~~~~~~--~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~A~~~vr~~R---p--~v~~n~~q~ 203 (327)
+.+..+++-++.++.+ ...|.|||++|++|||+|++||| +.... -++++|+.++-.+| . .....|.|.
T Consensus 89 ~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L----~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~ 164 (434)
T KOG2283|consen 89 ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYL----IYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQR 164 (434)
T ss_pred HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHH----HhhhhcCCHHHHHHHHhhhhccccccCCccCchhh
Confidence 9999999999999987 46899999999999999999999 66555 46999999999999 4 467899999
Q ss_pred HHHHHHHHHhh
Q 020371 204 QAVQDYYLQKV 214 (327)
Q Consensus 204 ~~L~~~~~~~~ 214 (327)
++++.|+..+.
T Consensus 165 RYv~Y~~~~l~ 175 (434)
T KOG2283|consen 165 RYVGYFSRVLL 175 (434)
T ss_pred HHHHHHHHHhh
Confidence 99999997533
No 34
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.08 E-value=8.4e-10 Score=99.67 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=73.2
Q ss_pred ecCCCCCCCcHHHHHHHHHHHHHHH-hCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHHHHHHHHhhCCCCcC
Q 020371 121 PTRDYLFAPSFADICQAVDFIHENA-SLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEAAYEYVRSIRPRVLL 198 (327)
Q Consensus 121 p~~D~~~~p~~~~~~~av~~I~~~~-~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~A~~~vr~~Rp~v~~ 198 (327)
.+.|...++....+.++++.+.+.. ..++||+|||..|.||||+++++.++..+|...+ .++.+++..+|.+||+++.
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~ 221 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQ 221 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSS
T ss_pred eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccC
Confidence 3344433445666777777777665 2358999999999999999999999888887655 9999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 020371 199 ASSQWQAVQDYY 210 (327)
Q Consensus 199 n~~q~~~L~~~~ 210 (327)
+..|+.+++..-
T Consensus 222 ~~~qy~f~~~~~ 233 (235)
T PF00102_consen 222 SPEQYRFCYMAV 233 (235)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998753
No 35
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.06 E-value=1.9e-09 Score=87.91 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=88.8
Q ss_pred ccccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCc------cccccCCcEEEEEecCCCCCCCcHHHHHHHHH
Q 020371 66 DRVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPT------SLYHDHNIDHLVIPTRDYLFAPSFADICQAVD 139 (327)
Q Consensus 66 s~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~------~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~ 139 (327)
.+|.+.++++++++..+++.++.+|+++|||.....|....+ ...+..|+.|.++|+... ..+.++++.+.+
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~ 81 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQR 81 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHH
Confidence 578999999999999999999999999999987665543222 244678999999999974 567778887777
Q ss_pred HHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHH
Q 020371 140 FIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVR 190 (327)
Q Consensus 140 ~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr 190 (327)
.|+++ ++|||.||+.|. ||.++ |.+.. ...||+.+++..+=+
T Consensus 82 Al~ea---egPVlayCrsGt-Rs~~l---y~~~~--~~~gm~~de~~a~g~ 123 (130)
T COG3453 82 ALDEA---EGPVLAYCRSGT-RSLNL---YGLGE--LDGGMSRDEIEALGQ 123 (130)
T ss_pred HHHHh---CCCEEeeecCCc-hHHHH---HHHHH--HhcCCCHHHHHHHHH
Confidence 77776 699999999995 77654 54332 446799988876543
No 36
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=99.03 E-value=9.1e-10 Score=107.03 Aligned_cols=137 Identities=16% Similarity=0.145 Sum_probs=109.7
Q ss_pred cEEEcC-CCCc-cCHHHHHh--cCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 020371 71 FIILGA-VPFP-ADVLRLKE--LGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENAS 146 (327)
Q Consensus 71 ~LylG~-~p~~-~~~~~L~~--~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~ 146 (327)
.++-|. ...+ ..+..|+. .-|.-++||++.... ++.+.+...|+.|+.+.+..+...|.......++..+++...
T Consensus 40 k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~ry-y~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~ 118 (393)
T KOG2386|consen 40 KTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLRY-YDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVD 118 (393)
T ss_pred CCCCCccccCHHHHHHHHHhcCceEEEEEeccceeee-eccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHh
Confidence 344444 3333 34455544 567889999887654 367778889999999999998777777777666666555544
Q ss_pred ----CCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHH
Q 020371 147 ----LGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQ 212 (327)
Q Consensus 147 ----~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~~ 212 (327)
.++-|+|||.+|.+|||-++++|| |...+|+..+|++.+...||..+.....+..|+..+..
T Consensus 119 ~~~~~~~LI~vhcthG~NrtgyLI~~yL----~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~ 184 (393)
T KOG2386|consen 119 DTKLDDELIGVHCTHGLNRTGYLICAYL----ADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHD 184 (393)
T ss_pred cccCCCCEEEEeCCCcccccceeeeeee----eeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccc
Confidence 478999999999999999999999 88888999999999999999999999999999988844
No 37
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.85 E-value=8.3e-09 Score=94.82 Aligned_cols=101 Identities=19% Similarity=0.281 Sum_probs=65.4
Q ss_pred cEEEEEec-CCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-----------CCH
Q 020371 115 IDHLVIPT-RDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-----------MAP 182 (327)
Q Consensus 115 i~y~~ip~-~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-----------~s~ 182 (327)
|.|+.++. .|. ..|+...+.+...-+...-...+|++|||.||.|||||+++.-.+.. |.... -..
T Consensus 185 Ihhf~y~nW~D~-~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~-~~~~~~~~t~~~~~t~D~i 262 (302)
T COG5599 185 IHHFQYINWVDF-NVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLR-MPNDTLNHTDTWEDTQDLI 262 (302)
T ss_pred EEEEEecCcccc-CCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHh-ccccccCCCchhhhhhhHH
Confidence 34444332 354 45544444444444443322469999999999999999998876321 11111 123
Q ss_pred HHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhhc
Q 020371 183 EAAYEYVRSIRPRVLLASSQWQAVQDYYLQKVKKI 217 (327)
Q Consensus 183 ~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~~~~~~~ 217 (327)
.+.+..+|++|-.++.|..|+.+|+.-...+.++.
T Consensus 263 f~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~~~q 297 (302)
T COG5599 263 FQIVLSLRSQRMKMVQNKTQFKFLYDAFLELNKSQ 297 (302)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999998775544443
No 38
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.71 E-value=8.2e-08 Score=81.60 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=83.6
Q ss_pred CCccCHHHHHhcCCeEEEEeccCCccc-CCcccccc--CCcEEEEEecCCCC-CCCcHHHHHHHHHHHHHHHhCCCeEEE
Q 020371 78 PFPADVLRLKELGVSGVVTLNESYETL-VPTSLYHD--HNIDHLVIPTRDYL-FAPSFADICQAVDFIHENASLGKTTYV 153 (327)
Q Consensus 78 p~~~~~~~L~~~gI~~VInL~~e~e~~-~~~~~~~~--~gi~y~~ip~~D~~-~~p~~~~~~~av~~I~~~~~~~~~VLV 153 (327)
|...-.+.-.+.|-+++|+|....... .+.....+ ..+.+..+-..|.+ .+|...++...++|++++-.. .|+||
T Consensus 20 Pl~~~ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllI 98 (172)
T COG5350 20 PLSVIAETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLI 98 (172)
T ss_pred hHHHHHHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceee
Confidence 333334445678999999998754321 11111111 11222333333333 667889999999999998765 89999
Q ss_pred EcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCHHHHH
Q 020371 154 HCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLASSQWQ 204 (327)
Q Consensus 154 HC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~~q~~ 204 (327)
||.+|+|||++++..--+ .-...++..+..+.+|..+|.+.||+--+.
T Consensus 99 HC~aGISRStA~A~i~a~---ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 99 HCYAGISRSTAAALIAAL---ALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred eeccccccchHHHHHHHH---hhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 999999999876543211 234679999999999999999999996543
No 39
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.66 E-value=3.8e-08 Score=84.52 Aligned_cols=60 Identities=32% Similarity=0.480 Sum_probs=47.1
Q ss_pred ccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHH
Q 020371 109 LYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 109 ~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
..+..|+.|+++|+.|+ ..|..+.|+++++++... ..+..+.+||.+|.|||+|..++|.
T Consensus 87 ~~~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~ 146 (149)
T PF14566_consen 87 LVEGNGLRYYRIPITDH-QAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYD 146 (149)
T ss_dssp HHHHTT-EEEEEEE-TT-S---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHH
T ss_pred HHhcCCceEEEEeCCCc-CCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999998 799999999999999988 5578999999999999999888887
No 40
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.64 E-value=6.5e-08 Score=89.88 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=79.0
Q ss_pred ccccC-cEEEcCCCCccCHH--HHHhcCCeEEEEeccCCcccCCccccc--------cCCcEEEEEecCCCCCCCcHHHH
Q 020371 66 DRVDQ-FIILGAVPFPADVL--RLKELGVSGVVTLNESYETLVPTSLYH--------DHNIDHLVIPTRDYLFAPSFADI 134 (327)
Q Consensus 66 s~I~~-~LylG~~p~~~~~~--~L~~~gI~~VInL~~e~e~~~~~~~~~--------~~gi~y~~ip~~D~~~~p~~~~~ 134 (327)
..|.+ ..|+++.|.+.+.. ....+++++++++..+.. .....+. ..++....++.... .....+.+
T Consensus 48 ~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~ 124 (249)
T COG2365 48 LGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESN--TNVELYTDHLINWDKAAIIMFESYRSFPT-REDAAERL 124 (249)
T ss_pred ccccceeEcCCCCcccccCCccccccccccccccccccch--hhhhhhhhhhhhhccccchhhhhhccCcc-chhhHHHH
Confidence 34444 48999999997776 678899999999987211 1111121 22233333333222 22233344
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCCCcCCH
Q 020371 135 CQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPRVLLAS 200 (327)
Q Consensus 135 ~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~v~~n~ 200 (327)
...+.++.... ++|||+||++|..|||.++++|+ ....++....+-.++..-++......
T Consensus 125 ~~~~~l~~~~e--~~PvL~HC~~GkdRTGl~~al~r----~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 125 VELLQLLADAE--NGPVLIHCTAGKDRTGLVAALYR----KLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHHHhhcc--cCCEEEecCCCCcchHHHHHHHH----HHhCCchhHHHHHHHHcCCccchhhH
Confidence 44444333321 49999999999999999999999 66555555566778888887665444
No 41
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.63 E-value=1.8e-07 Score=89.63 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=76.6
Q ss_pred cEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcCCCCCchHHHHHHHHhhhhhhhc-CCCHHHHHHHHHhh
Q 020371 115 IDHLVIPTRDYLFAPSFADICQAVDFIHENASL-GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHR-QMAPEAAYEYVRSI 192 (327)
Q Consensus 115 i~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~-~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~-~~s~~~A~~~vr~~ 192 (327)
+.|..|| |++.+.....+.++++.+.+.... .+|++|||.+|.|||||+++.-.|..+.... -.+...++..+|+.
T Consensus 255 f~y~~wP--d~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~ 332 (374)
T KOG0791|consen 255 FHYTAWP--DFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSA 332 (374)
T ss_pred EEEeecc--ccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhc
Confidence 3444455 664443445666666666666655 5799999999999999999998866555444 27888889999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhhhc
Q 020371 193 RPRVLLASSQWQAVQDYYLQKVKKI 217 (327)
Q Consensus 193 Rp~v~~n~~q~~~L~~~~~~~~~~~ 217 (327)
|+.+++|..|+-+|++.....+.+.
T Consensus 333 R~~mVqte~Qyvfl~~c~~~~l~~~ 357 (374)
T KOG0791|consen 333 RMLMVQTEDQYVFLHQCVLESLQGK 357 (374)
T ss_pred cccccchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999886655544
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.40 E-value=1.5e-06 Score=85.65 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHhhhhhhhc--CCCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhh
Q 020371 148 GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHR--QMAPEAAYEYVRSIRPRVLLASSQWQAVQDYYLQKVK 215 (327)
Q Consensus 148 ~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~--~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~~~~~~~~~ 215 (327)
.+|+.|||.+|.|||||+++.......+... ..+....+..+|.+|++++.+..|+.+++.-...+.+
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~~~ 368 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKYIK 368 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 5899999999999999999877544334322 2568888999999999999999999999877644443
No 43
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.38 E-value=7.1e-07 Score=91.11 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=73.9
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcCCCCCchHHHHHHHHhhhhhhhc--CCCHHHHHHHHHhhC
Q 020371 117 HLVIPTRDYLFAPSFADICQAVDFIHENASL-GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHR--QMAPEAAYEYVRSIR 193 (327)
Q Consensus 117 y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~-~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~--~~s~~~A~~~vr~~R 193 (327)
+|.+.+.+.+.+.+...+.++-+.++++... ..||+|||..|.|||||.|+.-+|+..|.+. ..+....++++|.+|
T Consensus 895 FHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR 974 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQR 974 (1004)
T ss_pred eeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcC
Confidence 3444444554566667777777777777653 5799999999999999999888877777532 278888999999999
Q ss_pred CCCcCCHHHHHHHHHHH
Q 020371 194 PRVLLASSQWQAVQDYY 210 (327)
Q Consensus 194 p~v~~n~~q~~~L~~~~ 210 (327)
|+++-+.+|.+++..--
T Consensus 975 ~GmVaTkdQFef~l~aV 991 (1004)
T KOG0793|consen 975 PGMVATKDQFEFALTAV 991 (1004)
T ss_pred CcceeehhhhHHHHHHH
Confidence 99999999999987554
No 44
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.36 E-value=6.1e-07 Score=95.95 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=72.8
Q ss_pred cEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhC--CCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHHHHHHHHh
Q 020371 115 IDHLVIPTRDYLFAPSFADICQAVDFIHENASL--GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEAAYEYVRS 191 (327)
Q Consensus 115 i~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~--~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~A~~~vr~ 191 (327)
++|..||.... .+.....+...........+. .+|+.|||.+|.||||+++++-+|+.+|+..+ +++.++++.+|.
T Consensus 984 fq~~~WP~~~~-~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~ 1062 (1087)
T KOG4228|consen 984 FQFTGWPEYGK-PPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRF 1062 (1087)
T ss_pred EEecCCcccCc-CCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhh
Confidence 35556666552 222223333333333333322 58999999999999999999999999999888 999999999999
Q ss_pred hCCCCcCCHHHHHHHHHHH
Q 020371 192 IRPRVLLASSQWQAVQDYY 210 (327)
Q Consensus 192 ~Rp~v~~n~~q~~~L~~~~ 210 (327)
.||+++.+.+|++++++-.
T Consensus 1063 ~rp~mv~t~~QY~fcYdv~ 1081 (1087)
T KOG4228|consen 1063 QRPGMVDTSDQYQFCYDVA 1081 (1087)
T ss_pred cCccccCcHHHHHHHHHHH
Confidence 9999999999999998765
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.09 E-value=2.8e-06 Score=90.94 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=62.2
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHhC----CCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC-CCHHHHHHHHHhhCCCC
Q 020371 122 TRDYLFAPSFADICQAVDFIHENASL----GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ-MAPEAAYEYVRSIRPRV 196 (327)
Q Consensus 122 ~~D~~~~p~~~~~~~av~~I~~~~~~----~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~-~s~~~A~~~vr~~Rp~v 196 (327)
+.|++.+-.. -..+.|+++...- .||++|||.+|.||||++++.=-+..+|...+ .+...-+..+|.+|+.+
T Consensus 703 Wpd~gvPe~~---t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 703 WPDHGVPETP---TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred CCCCCCcccc---hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 4565333332 3445555555433 39999999999999999776544333355455 88999999999999999
Q ss_pred cCCHHHHHHHHHHH
Q 020371 197 LLASSQWQAVQDYY 210 (327)
Q Consensus 197 ~~n~~q~~~L~~~~ 210 (327)
+.+.+|+-++++--
T Consensus 780 VQt~eQYiFi~~Al 793 (1087)
T KOG4228|consen 780 VQTEEQYIFIHEAL 793 (1087)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999887533
No 46
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.40 E-value=0.0028 Score=63.71 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=92.4
Q ss_pred ccCcEEEcCCCCccCH----HHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCC--CcHHHHHHHHHHH
Q 020371 68 VDQFIILGAVPFPADV----LRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFA--PSFADICQAVDFI 141 (327)
Q Consensus 68 I~~~LylG~~p~~~~~----~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~--p~~~~~~~av~~I 141 (327)
++.+||+|.....-.. ..-.......||++....... . -......|+++|+...-.. .....+.+++.|+
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~--~--~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv 367 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK--E--SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFV 367 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc--c--ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHH
Confidence 4568999998773211 111245778899987663210 1 1124567888888765211 2345688889999
Q ss_pred HHHHhC--CCeEEEEcCCCCCchHHHHHHHHhhhhhhhcC--CC--------------HHHHHHHHHhhCCCCcCCHHHH
Q 020371 142 HENASL--GKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQ--MA--------------PEAAYEYVRSIRPRVLLASSQW 203 (327)
Q Consensus 142 ~~~~~~--~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~--~s--------------~~~A~~~vr~~Rp~v~~n~~q~ 203 (327)
...+.. +++|+|+|..|...|..++.|.| ..... +. ..+-+.++-..+|.+.|+...+
T Consensus 368 ~~~L~~~~~~~iLV~C~sGkDlSVgVaLaIL----c~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTL 443 (451)
T PF04179_consen 368 RSHLSSDPGKPILVCCDSGKDLSVGVALAIL----CKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATL 443 (451)
T ss_pred HHHhcccCCCcEEEEcCCcchHHHHHHHHHH----HHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 998887 89999999999999999998887 54333 11 2234666777788888888888
Q ss_pred HHHHHH
Q 020371 204 QAVQDY 209 (327)
Q Consensus 204 ~~L~~~ 209 (327)
+.+..|
T Consensus 444 qsVNsF 449 (451)
T PF04179_consen 444 QSVNSF 449 (451)
T ss_pred HHHHHh
Confidence 888766
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=95.34 E-value=0.041 Score=46.87 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=45.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhC---CCeEEEEcCCCCCc----hHHHHHHHHhhhhhhhcCCCHHHHHHHHHhhCCC
Q 020371 123 RDYLFAPSFADICQAVDFIHENASL---GKTTYVHCKAGRGR----STTIVLCYLFSLQVEHRQMAPEAAYEYVRSIRPR 195 (327)
Q Consensus 123 ~D~~~~p~~~~~~~av~~I~~~~~~---~~~VLVHC~~G~gR----Sgtvv~ayLl~~~m~~~~~s~~~A~~~vr~~Rp~ 195 (327)
.|. ++..+.++-+++..+++.++. .++.+|||...-.+ ++.+++||+ |.+.+||+++|++.+...-|.
T Consensus 39 ~DF-GPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~----Vi~l~~spe~A~~~l~~~~p~ 113 (141)
T PF14671_consen 39 ADF-GPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYA----VIYLGMSPEEAYKPLASIQPP 113 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHH----HHTS---HHHHHHHHTTTT--
T ss_pred CcC-CCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHH----HHhcCCCHHHHHHHHHhcCCC
Confidence 355 577788899999888888776 57788888877655 566889999 889999999999999877653
Q ss_pred C
Q 020371 196 V 196 (327)
Q Consensus 196 v 196 (327)
.
T Consensus 114 ~ 114 (141)
T PF14671_consen 114 F 114 (141)
T ss_dssp -
T ss_pred C
Confidence 3
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=0.14 Score=52.60 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHHhh
Q 020371 138 VDFIHENASLGKTTYVHCKAGRGRSTTIVLCYLFS 172 (327)
Q Consensus 138 v~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayLl~ 172 (327)
+...++....+.+|||||.-|..||+-+++.-.|+
T Consensus 364 ~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 364 VRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 33344444457899999999999999988755543
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=85.76 E-value=1.9 Score=42.25 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=19.1
Q ss_pred hCCCeEEEEcCCCCCchHHHHHHHH
Q 020371 146 SLGKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
..+..|||||..|..||+.+++.-.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~q 253 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQ 253 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHH
Confidence 4588999999999999988776544
No 50
>PLN02160 thiosulfate sulfurtransferase
Probab=85.40 E-value=1.5 Score=36.70 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=15.7
Q ss_pred hCCCeEEEEcCCCCCchHHHH
Q 020371 146 SLGKTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtvv 166 (327)
..+++|+|||..| .||...+
T Consensus 79 ~~~~~IivyC~sG-~RS~~Aa 98 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKAT 98 (136)
T ss_pred CCCCcEEEECCCc-HHHHHHH
Confidence 4568999999999 5887553
No 51
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=84.52 E-value=1.7 Score=44.83 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhC-CCeEEEEcCCCCCchHHHHHHHH
Q 020371 136 QAVDFIHENASL-GKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 136 ~av~~I~~~~~~-~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
++..+|.+++.. +.+|||||..|..||..|+..--
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQ 366 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQ 366 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHH
Confidence 334455555653 58999999999999998876543
No 52
>PRK01415 hypothetical protein; Validated
Probab=81.20 E-value=3.3 Score=38.58 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=42.4
Q ss_pred EEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHH--HHhCCCe
Q 020371 73 ILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHE--NASLGKT 150 (327)
Q Consensus 73 ylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~--~~~~~~~ 150 (327)
-.|....+.+...+-+..=..|||+.+++|... . +|| +. ..+....|.++-.++.+ ....+++
T Consensus 109 ~~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~--G----------hi~--gA-inip~~~f~e~~~~~~~~~~~~k~k~ 173 (247)
T PRK01415 109 FKGEYIEPKDWDEFITKQDVIVIDTRNDYEVEV--G----------TFK--SA-INPNTKTFKQFPAWVQQNQELLKGKK 173 (247)
T ss_pred cCccccCHHHHHHHHhCCCcEEEECCCHHHHhc--C----------CcC--CC-CCCChHHHhhhHHHHhhhhhhcCCCe
Confidence 345555555555554444456889888765311 1 111 11 12223334443333322 1234789
Q ss_pred EEEEcCCCCCchHHHHHHHH
Q 020371 151 TYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 151 VLVHC~~G~gRSgtvv~ayL 170 (327)
|+++|+.|+ ||.. ++++|
T Consensus 174 Iv~yCtgGi-Rs~k-Aa~~L 191 (247)
T PRK01415 174 IAMVCTGGI-RCEK-STSLL 191 (247)
T ss_pred EEEECCCCh-HHHH-HHHHH
Confidence 999999985 7754 44555
No 53
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=80.87 E-value=7.2 Score=31.28 Aligned_cols=24 Identities=25% Similarity=0.095 Sum_probs=17.0
Q ss_pred hCCCeEEEEcCCCCCchHHHHHHHH
Q 020371 146 SLGKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
..+.+|+|+|..| +++++.++..|
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l 100 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL 100 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH
Confidence 3468999999998 55555555444
No 54
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=80.68 E-value=8.1 Score=29.94 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=14.9
Q ss_pred hCCCeEEEEcCCCCCchHHH
Q 020371 146 SLGKTTYVHCKAGRGRSTTI 165 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtv 165 (327)
..+++|+|+|..| .||...
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a 77 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA 77 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH
Confidence 3468999999988 588754
No 55
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=80.01 E-value=5.1 Score=31.14 Aligned_cols=67 Identities=19% Similarity=0.093 Sum_probs=37.8
Q ss_pred HHHhcCCeEEEEeccCCcccCCccccccCCcE-EEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchH
Q 020371 85 RLKELGVSGVVTLNESYETLVPTSLYHDHNID-HLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRST 163 (327)
Q Consensus 85 ~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~-y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSg 163 (327)
.+...+-..+|++.++.+... .+-.. ..++|+.+.... ..... ...+++++|+|+.|. ||.
T Consensus 14 ~~~~~~~~~liDvR~~~e~~~------~~i~~~~~~ip~~~~~~~--~~~~~---------~~~~~~ivv~C~~G~-rS~ 75 (110)
T COG0607 14 LLLAGEDAVLLDVREPEEYER------GHIPGAAINIPLSELKAA--ENLLE---------LPDDDPIVVYCASGV-RSA 75 (110)
T ss_pred HhhccCCCEEEeccChhHhhh------cCCCcceeeeecccchhh--hcccc---------cCCCCeEEEEeCCCC-ChH
Confidence 344556678999988744211 01122 566776653111 00001 455799999999997 775
Q ss_pred HHHHHHH
Q 020371 164 TIVLCYL 170 (327)
Q Consensus 164 tvv~ayL 170 (327)
..+ .+|
T Consensus 76 ~aa-~~L 81 (110)
T COG0607 76 AAA-AAL 81 (110)
T ss_pred HHH-HHH
Confidence 444 444
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=73.98 E-value=10 Score=36.34 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=59.4
Q ss_pred cccCcEEEcCCCCccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 020371 67 RVDQFIILGAVPFPADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENAS 146 (327)
Q Consensus 67 ~I~~~LylG~~p~~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~ 146 (327)
.|+|.-.+|.+..|.+...+-.-.=+-|||..+.+|... - ++ .+...|....|.++..++.+...
T Consensus 104 dv~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~i----------G--~F---~gAv~p~~~tFrefP~~v~~~~~ 168 (308)
T COG1054 104 DVDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAI----------G--HF---EGAVEPDIETFREFPAWVEENLD 168 (308)
T ss_pred CcCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEee----------e--ee---cCccCCChhhhhhhHHHHHHHHH
Confidence 366766778888887776664433377888888765321 1 11 22256777889999999988765
Q ss_pred C--CCeEEEEcCCCCCchHHHHHHHH
Q 020371 147 L--GKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 147 ~--~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
. +++|...|+.|+ |.=- +.+||
T Consensus 169 ~~~~KkVvmyCTGGI-RCEK-as~~m 192 (308)
T COG1054 169 LLKDKKVVMYCTGGI-RCEK-ASAWM 192 (308)
T ss_pred hccCCcEEEEcCCce-eehh-hHHHH
Confidence 4 789999999998 6543 34555
No 57
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=64.45 E-value=12 Score=35.97 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=16.4
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHH
Q 020371 147 LGKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 147 ~~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
.+++|+|||..|. ||.. ++.||
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L 191 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWM 191 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHH
Confidence 4689999999885 7754 45566
No 58
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=61.45 E-value=9.2 Score=29.50 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=14.5
Q ss_pred CCCeEEEEcCCCCCchHHHH
Q 020371 147 LGKTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 147 ~~~~VLVHC~~G~gRSgtvv 166 (327)
.+++|+|+|..|. ||..++
T Consensus 60 ~~~~ivv~C~~G~-rs~~aa 78 (100)
T cd01523 60 DDQEVTVICAKEG-SSQFVA 78 (100)
T ss_pred CCCeEEEEcCCCC-cHHHHH
Confidence 4689999999984 775433
No 59
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=58.88 E-value=19 Score=28.24 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.1
Q ss_pred CCeEEEEcCCCCCchHH
Q 020371 148 GKTTYVHCKAGRGRSTT 164 (327)
Q Consensus 148 ~~~VLVHC~~G~gRSgt 164 (327)
+.+|+|||..|. ||..
T Consensus 66 ~~~ivv~C~~G~-rs~~ 81 (109)
T cd01533 66 RTPIVVNCAGRT-RSII 81 (109)
T ss_pred CCeEEEECCCCc-hHHH
Confidence 579999999996 7744
No 60
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=54.30 E-value=48 Score=25.36 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=39.8
Q ss_pred hcCCeEEEEeccCCcccCCccccccCCc-EEEEEecCCC---CCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchH
Q 020371 88 ELGVSGVVTLNESYETLVPTSLYHDHNI-DHLVIPTRDY---LFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRST 163 (327)
Q Consensus 88 ~~gI~~VInL~~e~e~~~~~~~~~~~gi-~y~~ip~~D~---~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSg 163 (327)
..+=..|||+..+.+. ....| .-+++|.... ........+.............+.+|+++|..|. |++
T Consensus 10 ~~~~~~liD~R~~~~~-------~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~ 81 (113)
T PF00581_consen 10 ENESVLLIDVRSPEEY-------ERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSG 81 (113)
T ss_dssp TTTTEEEEEESSHHHH-------HHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHH
T ss_pred hCCCeEEEEeCCHHHH-------HcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccc
Confidence 4456688998866432 11111 1256666321 1233444555555555544556789999995554 555
Q ss_pred HHHHH
Q 020371 164 TIVLC 168 (327)
Q Consensus 164 tvv~a 168 (327)
..+.+
T Consensus 82 ~~~~~ 86 (113)
T PF00581_consen 82 SAAAA 86 (113)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 55444
No 61
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=53.42 E-value=24 Score=28.33 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=15.4
Q ss_pred hCCCeEEEEcCCCCCchHHHH
Q 020371 146 SLGKTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtvv 166 (327)
..+++|+|+|..| .||..++
T Consensus 62 ~~~~~ivv~C~~G-~rs~~aa 81 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAAA 81 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHHH
Confidence 4568999999988 5777553
No 62
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=51.15 E-value=30 Score=26.65 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=14.1
Q ss_pred CCCeEEEEcCCCCCchHHH
Q 020371 147 LGKTTYVHCKAGRGRSTTI 165 (327)
Q Consensus 147 ~~~~VLVHC~~G~gRSgtv 165 (327)
.+++|+|+|..| .||...
T Consensus 57 ~~~~vv~~c~~g-~rs~~~ 74 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV 74 (101)
T ss_pred CCCeEEEEeCCC-chHHHH
Confidence 368999999998 577554
No 63
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=47.76 E-value=40 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=19.9
Q ss_pred HhCCCeEEEEcCCCCCchHHHHHHHHhhhhhhhcCC
Q 020371 145 ASLGKTTYVHCKAGRGRSTTIVLCYLFSLQVEHRQM 180 (327)
Q Consensus 145 ~~~~~~VLVHC~~G~gRSgtvv~ayLl~~~m~~~~~ 180 (327)
...+.+|+|+|..|-.||..++ ++ ++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~----L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WL----LESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HH----HHHcCC
Confidence 3456899999986656877444 66 444454
No 64
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=47.55 E-value=35 Score=32.49 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.9
Q ss_pred eEEEEcCCCCCchHHHHH
Q 020371 150 TTYVHCKAGRGRSTTIVL 167 (327)
Q Consensus 150 ~VLVHC~~G~gRSgtvv~ 167 (327)
.|-|=|+.|.+||.+++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 688999999999998764
No 65
>PF15040 Humanin: Humanin family; PDB: 2GD3_A 1Y32_A.
Probab=47.06 E-value=5.8 Score=23.04 Aligned_cols=14 Identities=36% Similarity=0.359 Sum_probs=10.5
Q ss_pred HHHHhhhccccccc
Q 020371 286 AIARLSCLWPRWQE 299 (327)
Q Consensus 286 ~~~~~~~~~~~~~~ 299 (327)
+.+.||||+|+..+
T Consensus 2 a~rGFsCLlL~~~e 15 (24)
T PF15040_consen 2 ATRGFSCLLLLTSE 15 (24)
T ss_dssp --HHHHHHHHHHCC
T ss_pred CCCccEEEEEEecc
Confidence 45899999998865
No 66
>PRK05569 flavodoxin; Provisional
Probab=47.02 E-value=1.3e+02 Score=24.45 Aligned_cols=90 Identities=6% Similarity=-0.050 Sum_probs=51.3
Q ss_pred CCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCC-chHHHHHHHHhhhhhhhcCCCHHHHHHHHHh
Q 020371 113 HNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRG-RSTTIVLCYLFSLQVEHRQMAPEAAYEYVRS 191 (327)
Q Consensus 113 ~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~g-RSgtvv~ayLl~~~m~~~~~s~~~A~~~vr~ 191 (327)
...-.+-.|+.... ......+..+++.+.....+++++.+-+..|.+ ..+.-.+.-+ +...|+..-.. +..
T Consensus 49 ~d~iilgsPty~~~-~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~----l~~~g~~~~~~---~~~ 120 (141)
T PRK05569 49 ADAVAFGSPSMDNN-NIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDR----MKDYGFNVIGD---LAV 120 (141)
T ss_pred CCEEEEECCCcCCC-cCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHH----HHHCCCeEeee---EEE
Confidence 34566777776642 222245556666554433458999999999876 2322222333 34455544332 111
Q ss_pred hCCCCcCCHHHHHHHHHHHHHh
Q 020371 192 IRPRVLLASSQWQAVQDYYLQK 213 (327)
Q Consensus 192 ~Rp~v~~n~~q~~~L~~~~~~~ 213 (327)
...|+...++.+++|.+.+
T Consensus 121 ---~~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 121 ---NESPNKEELNSAKELGKKL 139 (141)
T ss_pred ---ccCCCHHHHHHHHHHHHHH
Confidence 2348888899988887543
No 67
>PRK05320 rhodanese superfamily protein; Provisional
Probab=45.95 E-value=38 Score=31.61 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=16.5
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHH
Q 020371 147 LGKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 147 ~~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
.+++|+++|+.|. ||.. ++.+|
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L 195 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHM 195 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHH
Confidence 4689999999994 7765 44555
No 68
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=45.41 E-value=41 Score=28.92 Aligned_cols=19 Identities=16% Similarity=-0.020 Sum_probs=15.7
Q ss_pred CCCeEEEEcCCCCCchHHH
Q 020371 147 LGKTTYVHCKAGRGRSTTI 165 (327)
Q Consensus 147 ~~~~VLVHC~~G~gRSgtv 165 (327)
.+.+|+|+|..|..||...
T Consensus 115 ~d~~IVvYC~~G~~~S~~a 133 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNA 133 (162)
T ss_pred CCCEEEEEECCCCHHHHHH
Confidence 4689999999988788763
No 69
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=44.16 E-value=97 Score=25.08 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHHHhcCCeEEEEeccCCccc---CCc----cccccCCcEEEEEecCC
Q 020371 83 VLRLKELGVSGVVTLNESYETL---VPT----SLYHDHNIDHLVIPTRD 124 (327)
Q Consensus 83 ~~~L~~~gI~~VInL~~e~e~~---~~~----~~~~~~gi~y~~ip~~D 124 (327)
+..|+..||+.|||+..-.... ... ......||.|.++|...
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 3568899999999986432111 111 23356799999999754
No 70
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=38.75 E-value=37 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhhhcCCCHHHHHHHHHhh
Q 020371 165 IVLCYLFSLQVEHRQMAPEAAYEYVRSI 192 (327)
Q Consensus 165 vv~ayLl~~~m~~~~~s~~~A~~~vr~~ 192 (327)
-+...| |...|+|.++|+.+++..
T Consensus 17 ~AkgiL----m~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 17 QAKGIL----MARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHH----HHHHT--HHHHHHHHHHH
T ss_pred HHHHHH----HHHhCcCHHHHHHHHHHH
Confidence 345567 898999999999999864
No 71
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=38.47 E-value=51 Score=31.35 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHH----hCCC---eEEEEcCCCCCchHHHHH
Q 020371 133 DICQAVDFIHENA----SLGK---TTYVHCKAGRGRSTTIVL 167 (327)
Q Consensus 133 ~~~~av~~I~~~~----~~~~---~VLVHC~~G~gRSgtvv~ 167 (327)
.++.+.++++.++ ++|+ .|-|=|+.|.+||.+++-
T Consensus 223 ~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 223 FLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 3444444544433 3343 588999999999998764
No 72
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=38.25 E-value=36 Score=31.68 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=51.7
Q ss_pred cEEEcCCCCc-cCHHHHHhcCCeEEEEeccCCcccCC---ccccccCCcEEEEEecCCCCC-----CCcHHHHHHHHHHH
Q 020371 71 FIILGAVPFP-ADVLRLKELGVSGVVTLNESYETLVP---TSLYHDHNIDHLVIPTRDYLF-----APSFADICQAVDFI 141 (327)
Q Consensus 71 ~LylG~~p~~-~~~~~L~~~gI~~VInL~~e~e~~~~---~~~~~~~gi~y~~ip~~D~~~-----~p~~~~~~~av~~I 141 (327)
.+..|++-.. .-..++++++|+.|||.+.++-.... .......||.|+++--..... --....+.++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 4788988444 44467789999999999988643221 224466789888886543311 12245677777777
Q ss_pred HHHHhCCCeEEE
Q 020371 142 HENASLGKTTYV 153 (327)
Q Consensus 142 ~~~~~~~~~VLV 153 (327)
.+. .+++||.
T Consensus 126 ~~~--~~~~ifl 135 (249)
T PF02571_consen 126 KEL--GGGRIFL 135 (249)
T ss_pred hhc--CCCCEEE
Confidence 543 1266664
No 73
>PRK09875 putative hydrolase; Provisional
Probab=35.47 E-value=1.4e+02 Score=28.38 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=14.7
Q ss_pred CHHHHHhcCCeEEEEeccC
Q 020371 82 DVLRLKELGVSGVVTLNES 100 (327)
Q Consensus 82 ~~~~L~~~gI~~VInL~~e 100 (327)
.+..+++.|.++||+++..
T Consensus 39 el~~~~~~Gg~tiVd~T~~ 57 (292)
T PRK09875 39 EMNDLMTRGVRNVIEMTNR 57 (292)
T ss_pred HHHHHHHhCCCeEEecCCC
Confidence 4566788999999998744
No 74
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=35.26 E-value=87 Score=24.59 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=15.0
Q ss_pred CCCeEEEEcCCCCCchHHHHH
Q 020371 147 LGKTTYVHCKAGRGRSTTIVL 167 (327)
Q Consensus 147 ~~~~VLVHC~~G~gRSgtvv~ 167 (327)
.+.+|+|||..+-.|+...+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCCeEEEEeecCCcchHHHHH
Confidence 357999999955567776543
No 75
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=35.05 E-value=43 Score=27.15 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=15.9
Q ss_pred hCCCeEEEEcCCCCCchHHHHHHHH
Q 020371 146 SLGKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
..+.+|+|||..+-.||+.++. +|
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~-~L 89 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMAR-HL 89 (121)
T ss_pred CCCCEEEEECCCccccHHHHHH-HH
Confidence 3468999999844467765433 44
No 76
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=34.17 E-value=71 Score=30.26 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHH----hCCC---eEEEEcCCCCCchHHHHH
Q 020371 133 DICQAVDFIHENA----SLGK---TTYVHCKAGRGRSTTIVL 167 (327)
Q Consensus 133 ~~~~av~~I~~~~----~~~~---~VLVHC~~G~gRSgtvv~ 167 (327)
.+.+..+++..++ ++|+ .|.|=|+.|.+||.+++=
T Consensus 221 f~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~iae 262 (286)
T COG1660 221 FYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred HHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHHH
Confidence 3344444444443 3354 588999999999998863
No 77
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=33.00 E-value=1.1e+02 Score=24.15 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=14.7
Q ss_pred CCeEEEEcCCCCCchHHHH
Q 020371 148 GKTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 148 ~~~VLVHC~~G~gRSgtvv 166 (327)
..+|+|||..|-.||...+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4789999998767876543
No 78
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=32.78 E-value=46 Score=26.75 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=14.9
Q ss_pred hCCCeEEEEcCCCCCchHHHH
Q 020371 146 SLGKTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtvv 166 (327)
..+++|+|+|..|. ||...+
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa 89 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV 89 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH
Confidence 34689999999985 876443
No 79
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=32.01 E-value=68 Score=31.57 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=14.8
Q ss_pred CeEEEEcCCCCCchHHHHHHHH
Q 020371 149 KTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 149 ~~VLVHC~~G~gRSgtvv~ayL 170 (327)
.+|+|||+.|. ||... +.+|
T Consensus 333 ~~Ivv~C~sG~-RS~~A-a~~L 352 (370)
T PRK05600 333 DNVVVYCASGI-RSADF-IEKY 352 (370)
T ss_pred CcEEEECCCCh-hHHHH-HHHH
Confidence 48999999994 87754 3444
No 80
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=31.93 E-value=33 Score=31.91 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=48.9
Q ss_pred cEEEcCCCCc-cCHHHHHhcCCeEEEEeccCCcccCC---ccccccCCcEEEEEecCCCC-----CCCcHHHHHHHHHHH
Q 020371 71 FIILGAVPFP-ADVLRLKELGVSGVVTLNESYETLVP---TSLYHDHNIDHLVIPTRDYL-----FAPSFADICQAVDFI 141 (327)
Q Consensus 71 ~LylG~~p~~-~~~~~L~~~gI~~VInL~~e~e~~~~---~~~~~~~gi~y~~ip~~D~~-----~~p~~~~~~~av~~I 141 (327)
.+..|++-.. .-..++++++|+.|||.+.++-.... .......|+.|+++--.... .--....++++++.+
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 3778887444 34456789999999999998643221 12445678888888644320 111234677777776
Q ss_pred HHHHhCCCeEEE
Q 020371 142 HENASLGKTTYV 153 (327)
Q Consensus 142 ~~~~~~~~~VLV 153 (327)
.+. ++||.
T Consensus 125 ~~~----~~vll 132 (248)
T PRK08057 125 APF----RRVLL 132 (248)
T ss_pred hcc----CCEEE
Confidence 543 45554
No 81
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=31.61 E-value=86 Score=24.90 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=13.4
Q ss_pred CCeEEEEcCCCCCchHHHH
Q 020371 148 GKTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 148 ~~~VLVHC~~G~gRSgtvv 166 (327)
+.+|+|+|..| .||...+
T Consensus 60 ~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 60 NDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCeEEEEeCCC-hHHHHHH
Confidence 57899999988 4665553
No 82
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=31.34 E-value=57 Score=24.77 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=12.7
Q ss_pred CCeEEEEcCCCCCchHH
Q 020371 148 GKTTYVHCKAGRGRSTT 164 (327)
Q Consensus 148 ~~~VLVHC~~G~gRSgt 164 (327)
+.+|+++|..|. ||..
T Consensus 56 ~~~iv~~c~~G~-rs~~ 71 (95)
T cd01534 56 GARIVLADDDGV-RADM 71 (95)
T ss_pred CCeEEEECCCCC-hHHH
Confidence 579999999985 6654
No 83
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=30.72 E-value=27 Score=27.72 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=8.9
Q ss_pred CeEEEEcCCC
Q 020371 149 KTTYVHCKAG 158 (327)
Q Consensus 149 ~~VLVHC~~G 158 (327)
..+||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6899999877
No 84
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.59 E-value=1e+02 Score=32.26 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=33.6
Q ss_pred ecchHH-HHHHHHHhhccCCCCccccCcEEEcCCCCccCHHHHHhcCCeEEEE
Q 020371 45 FYPTLL-YNVVRNKIQSEFRWWDRVDQFIILGAVPFPADVLRLKELGVSGVVT 96 (327)
Q Consensus 45 ~~P~l~-~~~~~~~~~~~~~~~s~I~~~LylG~~p~~~~~~~L~~~gI~~VIn 96 (327)
+.||.- +..+.+.++.=..+++||.|++.+|+..-.+.-.+|+ .||.-+|.
T Consensus 217 ivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLR-KGiNILIg 268 (708)
T KOG0348|consen 217 IVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLR-KGINILIG 268 (708)
T ss_pred EechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHh-cCceEEEc
Confidence 348762 2222222232234579999999999998888777775 58887773
No 85
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=30.28 E-value=69 Score=30.27 Aligned_cols=41 Identities=12% Similarity=0.330 Sum_probs=26.3
Q ss_pred cccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcC
Q 020371 108 SLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCK 156 (327)
Q Consensus 108 ~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~ 156 (327)
..|+..|+.|+ -|++.+ ++.+.++.+..+....+||+||..
T Consensus 229 ~lFe~LG~~Y~-GPiDGH-------dl~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGH-------DLEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEE-EEEETT--------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEE-eccCCC-------CHHHHHHHHHHHhcCCCCEEEEEe
Confidence 57888899985 466554 344444555555555799999963
No 86
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=30.16 E-value=51 Score=25.30 Aligned_cols=17 Identities=41% Similarity=0.516 Sum_probs=13.1
Q ss_pred CCCeEEEEcCCCCCchHH
Q 020371 147 LGKTTYVHCKAGRGRSTT 164 (327)
Q Consensus 147 ~~~~VLVHC~~G~gRSgt 164 (327)
.+.+|+|+|..|. ||..
T Consensus 65 ~~~~ivv~c~~g~-~s~~ 81 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA 81 (106)
T ss_pred CCCeEEEECCCcH-HHHH
Confidence 3689999999885 6643
No 87
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=30.06 E-value=61 Score=24.60 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=13.6
Q ss_pred hCCCeEEEEcCCCCCchHH
Q 020371 146 SLGKTTYVHCKAGRGRSTT 164 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgt 164 (327)
..+.+|+|+|..| .||..
T Consensus 59 ~~~~~ivv~c~~g-~~s~~ 76 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL 76 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH
Confidence 4468999999887 57643
No 88
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=30.03 E-value=54 Score=28.05 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCeEEEEcCC
Q 020371 136 QAVDFIHENASLGKTTYVHCKA 157 (327)
Q Consensus 136 ~av~~I~~~~~~~~~VLVHC~~ 157 (327)
-++.++.++...|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7789999999999999999943
No 89
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=29.86 E-value=80 Score=26.70 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCCCchHHHHH
Q 020371 148 GKTTYVHCKAGRGRSTTIVL 167 (327)
Q Consensus 148 ~~~VLVHC~~G~gRSgtvv~ 167 (327)
.+.|+++|+.|. ||.+..-
T Consensus 89 d~eiIf~C~SG~-Rs~~A~~ 107 (136)
T KOG1530|consen 89 DKEIIFGCASGV-RSLKATK 107 (136)
T ss_pred CCcEEEEeccCc-chhHHHH
Confidence 468999999997 8876543
No 90
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=29.00 E-value=87 Score=26.19 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCC
Q 020371 134 ICQAVDFIHENASLGKTTYVHCKA 157 (327)
Q Consensus 134 ~~~av~~I~~~~~~~~~VLVHC~~ 157 (327)
..-+++.++++..+|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 566789999999999999999954
No 91
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=28.95 E-value=80 Score=23.88 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCCCchHHHHHHHH
Q 020371 148 GKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 148 ~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
+.+|+|+|..|...++..++..|
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L 72 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRL 72 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHH
Confidence 67999999998644344444444
No 92
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=28.87 E-value=64 Score=24.74 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=13.9
Q ss_pred CCeEEEEcCCCCCchHHHH
Q 020371 148 GKTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 148 ~~~VLVHC~~G~gRSgtvv 166 (327)
+.+|+|+|..|. ||..++
T Consensus 65 ~~~vv~~c~~g~-~s~~~a 82 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFA 82 (105)
T ss_pred CCeEEEEeCCCc-cHHHHH
Confidence 589999999986 765543
No 93
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.72 E-value=47 Score=26.02 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.8
Q ss_pred CeEEEEcCCCCCchHHHH
Q 020371 149 KTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 149 ~~VLVHC~~G~gRSgtvv 166 (327)
++||+-|.+|.+ |..++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 689999999998 66544
No 94
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=28.59 E-value=1.1e+02 Score=28.28 Aligned_cols=34 Identities=3% Similarity=-0.028 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHH
Q 020371 132 ADICQAVDFIHENASLGKTTYVHCKAGRGRSTTI 165 (327)
Q Consensus 132 ~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtv 165 (327)
.+..-+.++|+-+...+.||.|||+...+..--+
T Consensus 111 ~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~i 144 (258)
T PRK11449 111 RQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMH 144 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHH
Confidence 3445555666666666899999998755444333
No 95
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.94 E-value=1.2e+02 Score=27.01 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHH
Q 020371 132 ADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 132 ~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
+.+.++++.|.+++.++++|++. |.|+|+.++..+-
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a 60 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFA 60 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHH
Confidence 66888999999998888999884 8888988765544
No 96
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=27.74 E-value=53 Score=24.93 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=15.6
Q ss_pred hCCCeEEEEcCCCCCchHHHHHHHH
Q 020371 146 SLGKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
..+.+|+|+|..| +||..+ +.+|
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l 76 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL 76 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH
Confidence 3468999999876 577554 3344
No 97
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=27.67 E-value=84 Score=26.47 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcCC
Q 020371 133 DICQAVDFIHENASLGKTTYVHCKA 157 (327)
Q Consensus 133 ~~~~av~~I~~~~~~~~~VLVHC~~ 157 (327)
...-++.++.++..+|.+|+|+|..
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4566788999999999999999954
No 98
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=26.23 E-value=81 Score=29.50 Aligned_cols=51 Identities=8% Similarity=-0.060 Sum_probs=31.2
Q ss_pred CCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHH
Q 020371 113 HNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLC 168 (327)
Q Consensus 113 ~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~a 168 (327)
.|+.|++-... +-..+..-+..+|+-+.+.+.||.|||+.-...+-.++--
T Consensus 95 iGLDy~~~~~~-----~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~ 145 (256)
T COG0084 95 IGLDYYWDKEP-----DKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKE 145 (256)
T ss_pred cccCccccccc-----cHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHh
Confidence 46666543322 2223555556777777777899999998765555444333
No 99
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=25.90 E-value=74 Score=25.08 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=14.2
Q ss_pred CCCeEEEEcCCCCCchHHHH
Q 020371 147 LGKTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 147 ~~~~VLVHC~~G~gRSgtvv 166 (327)
.+.+|+|+|..|. ||...+
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa 75 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAK 75 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHH
Confidence 3578999999984 776553
No 100
>smart00400 ZnF_CHCC zinc finger.
Probab=25.12 E-value=85 Score=21.71 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=22.8
Q ss_pred EEEcCCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHHH
Q 020371 152 YVHCKAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEYV 189 (327)
Q Consensus 152 LVHC~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~v 189 (327)
..||.+ -|+.|-++- ++ |+..+++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~i~-fv----~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNVIS-FL----MKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCHHH-HH----HHHHCcCHHHHHHHh
Confidence 467874 456666644 44 677899999999875
No 101
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=24.68 E-value=1.2e+02 Score=27.41 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHHHHHH
Q 020371 132 ADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIVLCYL 170 (327)
Q Consensus 132 ~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv~ayL 170 (327)
+.|.++++.|-++ .++|+| .|.||||.+.-++-
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V---~G~GkSG~Igkk~A 58 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFV---TGVGKSGLIGKKFA 58 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEE---EcCChhHHHHHHHH
Confidence 5666677766655 477877 59999999886655
No 102
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.32 E-value=4.4e+02 Score=24.49 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=69.4
Q ss_pred HHHHHhcCCeEEEEeccCCcccCCc-------cccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q 020371 83 VLRLKELGVSGVVTLNESYETLVPT-------SLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHC 155 (327)
Q Consensus 83 ~~~L~~~gI~~VInL~~e~e~~~~~-------~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC 155 (327)
.+..+++|+...+++...... +. ....+.|...+.++ |....-.+.++.+.+..+.+....+-++-+||
T Consensus 115 i~~ak~~G~~v~~~~~~a~~~--~~~~~~~~~~~~~~~g~~~i~l~--DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~ 190 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISGY--SDEELLELLELVNEIKPDVFYIV--DSFGSMYPEDIKRIISLLRSNLDKDIKLGFHA 190 (266)
T ss_pred HHHHHHCCCeEEEEEEeecCC--CHHHHHHHHHHHHhCCCCEEEEe--cCCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 345578999988888665431 21 12234577766666 65566777889999988887664447899999
Q ss_pred CCCCCchHHHHHHHHhhhhhh------------hcCCCHHHHHHHHHhhCCCCcCCHHHHHHHH
Q 020371 156 KAGRGRSTTIVLCYLFSLQVE------------HRQMAPEAAYEYVRSIRPRVLLASSQWQAVQ 207 (327)
Q Consensus 156 ~~G~gRSgtvv~ayLl~~~m~------------~~~~s~~~A~~~vr~~Rp~v~~n~~q~~~L~ 207 (327)
..-.|=+.+-+.+-+ ..|.. ..+.+.++.+..++... ....+......+.
T Consensus 191 Hn~~Gla~AN~laA~-~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~~-~~~~dl~~l~~~~ 252 (266)
T cd07944 191 HNNLQLALANTLEAI-ELGVEIIDATVYGMGRGAGNLPTELLLDYLNNKF-GKKYNLEPVLELI 252 (266)
T ss_pred CCCccHHHHHHHHHH-HcCCCEEEEecccCCCCcCcHHHHHHHHHHHHhh-ccCCCHHHHHHHH
Confidence 876655544333332 11110 11245566666666653 2334554443333
No 103
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=24.31 E-value=85 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=13.3
Q ss_pred hCCCeEEEEcCCCCCchHH
Q 020371 146 SLGKTTYVHCKAGRGRSTT 164 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSgt 164 (327)
..+++|+|+|..|. ||..
T Consensus 52 ~~~~~iv~~c~~g~-~s~~ 69 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ 69 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH
Confidence 34689999999884 5553
No 104
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=24.16 E-value=82 Score=29.49 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=20.7
Q ss_pred CCCCCchHHHHHHHHhhhhhhhcCCCHHHHHHH
Q 020371 156 KAGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEY 188 (327)
Q Consensus 156 ~~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~ 188 (327)
--|.||||+.+.+-+ + .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l----~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGL----L--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHH----H--CCCCHHHHHHH
Confidence 469999999888877 3 57888887654
No 105
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=22.42 E-value=5.8e+02 Score=23.03 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=41.9
Q ss_pred ccCHHHHHhcCCeEEEEeccCCcccCCccccccCCcEEEEEecCCCC----CCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q 020371 80 PADVLRLKELGVSGVVTLNESYETLVPTSLYHDHNIDHLVIPTRDYL----FAPSFADICQAVDFIHENASLGKTTYVHC 155 (327)
Q Consensus 80 ~~~~~~L~~~gI~~VInL~~e~e~~~~~~~~~~~gi~y~~ip~~D~~----~~p~~~~~~~av~~I~~~~~~~~~VLVHC 155 (327)
..-.+.|+++|+..|++-........+.......++.|+++--.... ..=+.+.+++..+.|.++..+++.|+|-.
T Consensus 132 ~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~f 211 (230)
T PF01904_consen 132 EEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFF 211 (230)
T ss_dssp HHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34467889999999987655422111111111136777776644421 11255789999999999988777777766
Q ss_pred CC
Q 020371 156 KA 157 (327)
Q Consensus 156 ~~ 157 (327)
..
T Consensus 212 nN 213 (230)
T PF01904_consen 212 NN 213 (230)
T ss_dssp -S
T ss_pred eC
Confidence 55
No 106
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.23 E-value=2.6e+02 Score=24.10 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=28.3
Q ss_pred ccccCCcEEEEEecCCCC-CCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHHH
Q 020371 109 LYHDHNIDHLVIPTRDYL-FAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRSTTIV 166 (327)
Q Consensus 109 ~~~~~gi~y~~ip~~D~~-~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtvv 166 (327)
...+.|+.+..|-+...+ ..+..+ ++++.+.+....|.-||.|+.. .+..|+-
T Consensus 115 ~l~~~G~~~v~w~~~~~D~~~~~~~---~i~~~~~~~~~~g~Iil~Hd~~--~~~~t~~ 168 (191)
T TIGR02764 115 AAESLGYTVVHWSVDSRDWKNPGVE---SIVDRVVKNTKPGDIILLHASD--SAKQTVK 168 (191)
T ss_pred HHHHcCCeEEEecCCCCccCCCCHH---HHHHHHHhcCCCCCEEEEeCCC--CcHhHHH
Confidence 335667777666553221 123332 3344444455567889999943 4544443
No 107
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=22.12 E-value=90 Score=32.94 Aligned_cols=47 Identities=9% Similarity=0.350 Sum_probs=29.9
Q ss_pred cccccCCcEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCch
Q 020371 108 SLYHDHNIDHLVIPTRDYLFAPSFADICQAVDFIHENASLGKTTYVHCKAGRGRS 162 (327)
Q Consensus 108 ~~~~~~gi~y~~ip~~D~~~~p~~~~~~~av~~I~~~~~~~~~VLVHC~~G~gRS 162 (327)
..|+..|+.|.. |++.+ +.+.+.++++.+ ...++|++|||+.=+|+-
T Consensus 232 ~~f~~~G~~~~~-~vDGh----d~~~l~~al~~a---k~~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 232 TFFEELGFNYIG-PVDGH----DLLELIETLKNA---KKLKGPVFLHIQTKKGKG 278 (617)
T ss_pred chHHHcCCcEEc-ccCCC----CHHHHHHHHHHH---hcCCCCEEEEEEecCCCC
Confidence 347778998876 77554 445555555543 334579999987655554
No 108
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=21.98 E-value=1.2e+02 Score=26.05 Aligned_cols=27 Identities=4% Similarity=-0.113 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCC
Q 020371 132 ADICQAVDFIHENASLGKTTYVHCKAG 158 (327)
Q Consensus 132 ~~~~~av~~I~~~~~~~~~VLVHC~~G 158 (327)
....-+++++.++..+|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 355667888999999999999999554
No 109
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=21.97 E-value=1.8e+02 Score=23.68 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCchHHH
Q 020371 132 ADICQAVDFIHENASLGKTTYVHCKAGRGRSTTI 165 (327)
Q Consensus 132 ~~~~~av~~I~~~~~~~~~VLVHC~~G~gRSgtv 165 (327)
..+.++.+.+.+....+.||+|..-.|.|++-..
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHH
Confidence 3567777888888888899999999999999743
No 110
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=21.87 E-value=90 Score=29.57 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=19.6
Q ss_pred CCCCchHHHHHHHHhhhhhhhcCCCHHHHHHH
Q 020371 157 AGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEY 188 (327)
Q Consensus 157 ~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~ 188 (327)
-|.||||+-+.+-| + .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l----~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGL----L--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHH----H--cCCCHHHHHHH
Confidence 59999998877766 3 58888887653
No 111
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=21.80 E-value=1.1e+02 Score=23.88 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=13.9
Q ss_pred hCCCeEEEEcCCCCC-chHH
Q 020371 146 SLGKTTYVHCKAGRG-RSTT 164 (327)
Q Consensus 146 ~~~~~VLVHC~~G~g-RSgt 164 (327)
..+.+|+|+|..|.. |+..
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~ 81 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATK 81 (110)
T ss_pred CCCCeEEEEECCCCCchHHH
Confidence 446899999998864 4443
No 112
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.17 E-value=61 Score=30.26 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=46.6
Q ss_pred EEEcCCCCccCH-HHHHhcCCeEEEEeccCCcccCC---ccccccCCcEEEEEecCC---CCCCCcHHHHHHHHHHHHHH
Q 020371 72 IILGAVPFPADV-LRLKELGVSGVVTLNESYETLVP---TSLYHDHNIDHLVIPTRD---YLFAPSFADICQAVDFIHEN 144 (327)
Q Consensus 72 LylG~~p~~~~~-~~L~~~gI~~VInL~~e~e~~~~---~~~~~~~gi~y~~ip~~D---~~~~p~~~~~~~av~~I~~~ 144 (327)
+..|.. ....+ +.+++.+|+.|||.+.++-.... ....+..|+.|+++--.. .+.-.....+.++++.+.+.
T Consensus 47 v~~g~l-~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~ 125 (256)
T TIGR00715 47 VHTGAL-DPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQP 125 (256)
T ss_pred EEECCC-CHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhc
Confidence 455554 33334 67789999999999988643111 124456789999884321 11112234567777766441
Q ss_pred HhCCCeEEE
Q 020371 145 ASLGKTTYV 153 (327)
Q Consensus 145 ~~~~~~VLV 153 (327)
...++.|+.
T Consensus 126 ~~~~~~i~l 134 (256)
T TIGR00715 126 YLRGKRVFL 134 (256)
T ss_pred cccCCcEEE
Confidence 112356664
No 113
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=20.79 E-value=99 Score=28.93 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHhhhhhhhcCCCHHHHHHH
Q 020371 157 AGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEY 188 (327)
Q Consensus 157 ~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~ 188 (327)
-|.||||+-+.+-| + .|++.++|.++
T Consensus 160 PGiSRSG~TI~a~l----~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGL----F--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHH----H--cCCCHHHHHHH
Confidence 59999998777766 2 57888887653
No 114
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.26 E-value=2.1e+02 Score=28.32 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=11.2
Q ss_pred hCCCeEEEEcCCCC
Q 020371 146 SLGKTTYVHCKAGR 159 (327)
Q Consensus 146 ~~~~~VLVHC~~G~ 159 (327)
..|..||.||.+|.
T Consensus 165 ~dg~~ILThcnsg~ 178 (363)
T PRK05772 165 NDGDTVLTQCNAGG 178 (363)
T ss_pred CCCCEEEEecCCcc
Confidence 34678999999874
No 115
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=20.26 E-value=62 Score=30.24 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=12.5
Q ss_pred hCCCeEEEEcCCCCCchH
Q 020371 146 SLGKTTYVHCKAGRGRST 163 (327)
Q Consensus 146 ~~~~~VLVHC~~G~gRSg 163 (327)
..+++|+++|..|. |++
T Consensus 229 ~~~~~ii~yC~~G~-~A~ 245 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAA 245 (281)
T ss_pred CCCCCEEEECCcHH-HHH
Confidence 34679999998876 443
No 116
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.15 E-value=1.1e+02 Score=23.24 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=11.8
Q ss_pred CeEEEEcCCCCCchH
Q 020371 149 KTTYVHCKAGRGRST 163 (327)
Q Consensus 149 ~~VLVHC~~G~gRSg 163 (327)
++|++.|..|.|=|.
T Consensus 1 ~kilvvCg~G~gtS~ 15 (87)
T cd05567 1 KKIVFACDAGMGSSA 15 (87)
T ss_pred CEEEEECCCCccHHH
Confidence 469999999997543
No 117
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=20.07 E-value=1.1e+02 Score=28.93 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=19.7
Q ss_pred CCCCchHHHHHHHHhhhhhhhcCCCHHHHHHH
Q 020371 157 AGRGRSTTIVLCYLFSLQVEHRQMAPEAAYEY 188 (327)
Q Consensus 157 ~G~gRSgtvv~ayLl~~~m~~~~~s~~~A~~~ 188 (327)
-|.||||+-+.+-| + .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l----~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGL----L--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHH----H--cCCCHHHHHHH
Confidence 59999998777766 2 58888887653
Done!