Your job contains 1 sequence.
>020372
MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK
MEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYG
YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFV
GSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP
GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI
AMMNGCQLGGKKLKVQLKRDNKQNKPY
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020372
(327 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-... 986 2.4e-99 1
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3... 570 1.4e-62 2
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 261 1.2e-42 3
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 275 3.6e-42 2
UNIPROTKB|F1ND14 - symbol:CELF1 "CUGBP Elav-like family m... 277 7.9e-42 3
UNIPROTKB|F1NYP4 - symbol:CELF4 "Uncharacterized protein"... 266 2.5e-41 2
FB|FBgn0264001 - symbol:bru-3 "bruno-3" species:7227 "Dro... 277 2.9e-41 2
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro... 260 3.1e-41 2
RGD|1307630 - symbol:Celf4 "CUGBP, Elav-like family membe... 262 6.6e-41 2
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 265 7.1e-41 2
UNIPROTKB|F1P5J4 - symbol:BRUNOL6 "Uncharacterized protei... 266 1.1e-40 2
UNIPROTKB|E1BIM7 - symbol:LOC100851458 "Uncharacterized p... 276 2.2e-40 2
UNIPROTKB|B4DIB6 - symbol:CELF2 "cDNA FLJ51739, highly si... 276 2.2e-40 2
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ... 275 4.8e-40 2
UNIPROTKB|A7MB95 - symbol:CUGBP1 "Uncharacterized protein... 279 6.7e-40 2
UNIPROTKB|Q92879 - symbol:CELF1 "CUGBP Elav-like family m... 279 6.7e-40 2
MGI|MGI:1342295 - symbol:Celf1 "CUGBP, Elav-like family m... 279 6.7e-40 2
RGD|1307721 - symbol:Celf1 "CUGBP, Elav-like family membe... 279 6.8e-40 2
UNIPROTKB|Q4QQT3 - symbol:Celf1 "CUGBP Elav-like family m... 279 6.8e-40 2
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m... 270 8.5e-40 2
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 279 1.0e-39 2
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 279 1.1e-39 2
UNIPROTKB|Q5F3T7 - symbol:CELF1 "CUGBP Elav-like family m... 277 1.5e-39 2
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m... 276 2.3e-39 2
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m... 276 2.3e-39 2
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family... 260 2.3e-39 2
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m... 276 2.5e-39 2
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"... 276 2.5e-39 2
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m... 276 2.8e-39 2
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m... 276 2.9e-39 2
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m... 276 3.4e-39 2
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m... 276 3.4e-39 2
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ... 276 3.4e-39 2
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m... 276 4.1e-39 2
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m... 264 4.6e-39 2
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"... 268 4.6e-39 2
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 259 4.9e-39 2
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"... 263 6.0e-39 2
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 262 6.7e-39 2
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m... 257 9.6e-39 2
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m... 261 1.0e-38 2
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m... 261 1.0e-38 2
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 260 1.1e-38 2
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"... 262 1.5e-38 2
UNIPROTKB|Q5R995 - symbol:CELF1 "CUGBP Elav-like family m... 279 3.1e-38 2
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 238 3.7e-38 2
WB|WBGene00006807 - symbol:unc-75 species:6239 "Caenorhab... 247 8.8e-38 2
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 260 1.1e-37 2
UNIPROTKB|F1SAI1 - symbol:CELF4 "Uncharacterized protein"... 232 2.6e-37 2
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe... 250 2.8e-37 2
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 399 3.9e-37 1
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 397 6.3e-37 1
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 394 1.3e-36 1
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 257 1.5e-36 2
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 393 1.7e-36 1
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 251 1.7e-36 2
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 391 2.7e-36 1
UNIPROTKB|B3KWE6 - symbol:BRUNOL6 "cDNA FLJ42868 fis, clo... 391 2.7e-36 1
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 283 7.4e-36 2
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 256 1.0e-35 2
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 260 8.1e-35 2
UNIPROTKB|F1SID9 - symbol:CELF1 "Uncharacterized protein"... 266 7.9e-33 2
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 191 5.4e-29 2
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 189 3.8e-27 3
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 186 1.1e-26 2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 189 1.9e-26 3
UNIPROTKB|F1NXF6 - symbol:BRUNOL6 "Uncharacterized protei... 183 7.0e-26 3
UNIPROTKB|F1RUN0 - symbol:CELF2 "Uncharacterized protein"... 276 4.2e-24 1
UNIPROTKB|B4DQL3 - symbol:CELF3 "CUGBP Elav-like family m... 258 3.4e-22 1
UNIPROTKB|K7EJD7 - symbol:CELF4 "CUGBP Elav-like family m... 258 3.4e-22 1
GENEDB_PFALCIPARUM|MAL8P1.40 - symbol:MAL8P1.40 "RNA-bind... 174 4.6e-20 2
UNIPROTKB|Q8IB66 - symbol:MAL8P1.40 "RNA binding protein,... 174 4.6e-20 2
UNIPROTKB|F1M3I9 - symbol:Brunol4 "Protein Brunol4" speci... 189 1.8e-19 2
UNIPROTKB|Q0V9L3 - symbol:celf4 "CUGBP Elav-like family m... 129 5.3e-19 3
UNIPROTKB|F1P311 - symbol:CELF1 "CUGBP Elav-like family m... 171 6.3e-19 2
UNIPROTKB|F1P022 - symbol:CELF2 "CUGBP Elav-like family m... 170 1.3e-18 2
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 229 2.0e-18 1
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 229 2.1e-18 1
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 229 2.1e-18 1
UNIPROTKB|K7EJK3 - symbol:CELF4 "CUGBP Elav-like family m... 189 6.9e-15 1
UNIPROTKB|K7EQ97 - symbol:CELF4 "CUGBP Elav-like family m... 189 6.9e-15 1
ZFIN|ZDB-GENE-120215-101 - symbol:si:dkey-205h23.2 "si:dk... 188 9.3e-15 1
UNIPROTKB|H9L0T2 - symbol:H9L0T2 "Uncharacterized protein... 179 1.1e-13 1
ZFIN|ZDB-GENE-070912-150 - symbol:si:ch211-168n8.1 "si:ch... 178 1.5e-13 1
UNIPROTKB|K7ES14 - symbol:CELF5 "CUGBP Elav-like family m... 187 5.0e-13 1
UNIPROTKB|B4DFI3 - symbol:CELF5 "CUGBP Elav-like family m... 187 8.0e-13 1
FB|FBgn0260400 - symbol:elav "embryonic lethal abnormal v... 119 2.4e-12 2
RGD|1565016 - symbol:Celf5 "CUGBP, Elav-like family membe... 182 7.3e-12 1
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 139 1.2e-11 2
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 128 1.3e-11 2
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 118 2.6e-11 2
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 124 3.1e-11 2
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 128 3.3e-11 2
GENEDB_PFALCIPARUM|PFL1745c - symbol:PFL1745c "clustered-... 172 4.0e-11 2
UNIPROTKB|Q8I562 - symbol:PFL1745c "Clustered-asparagine-... 172 4.0e-11 2
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399... 161 4.3e-11 2
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ... 161 4.3e-11 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 126 4.9e-11 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 126 5.9e-11 2
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 118 6.1e-11 2
WARNING: Descriptions of 392 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 201/330 (60%), Positives = 235/330 (71%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
MLPKNVSEAEV +LFS YGTIKDLQILRG+QQTSKGCAFLKYETKEQA++A+E+INGKHK
Sbjct: 112 MLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHK 171
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 120
MEGS+VPLVVKWADTE+E L N D +PSLFGALPMGY PPYNGYG
Sbjct: 172 MEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYG 231
Query: 121 Y-QASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN--AMRGASPD-LSSNMGPRNYAMPP 176
Y Q G+YG Y LPP+QNQ F +I NQGN A++G SPD + + RN+ MPP
Sbjct: 232 YHQPPGTYG---YMLPPIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPP 288
Query: 177 SGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI 236
++GSGYPA+ G +P YP G++ RPL++SPGS+SP + S P Q
Sbjct: 289 GNYMGSGYPAMRGHPFPFAYPRGIVSPRPLSSSPGSISPGM--STPLGIGLSSVV---QT 343
Query: 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
EGP GANLFIY+IP+EFGDQEL AFQ+FG VLSAKVFVDKATGVSKCFGFVSY+S A+A
Sbjct: 344 EGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAA 403
Query: 297 QNAIAMMNGCXXXXXXXXXXXXRDNKQNKP 326
QNAI MMNG RD+ +P
Sbjct: 404 QNAIDMMNGRHLGGKKLKVQLKRDSNNGQP 433
Score = 115 (45.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+PK++SE+++ LF + + ++ I++ + S+GC FL ++E+A + A + K
Sbjct: 25 IPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKT 84
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G++ L VK+AD E E
Sbjct: 85 LPGANSLLQVKYADGELE 102
Score = 69 (29.3 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ +P+ + E+ + F +G + ++ + A SK F+ YE+ A +A+ +
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 304 NG 305
NG
Sbjct: 167 NG 168
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 124/224 (55%), Positives = 151/224 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
MLPKNVSE EV +LFS YGTIKDLQILRGS QTSKGC FLKYE+KEQA+AA+EA+NG+H
Sbjct: 115 MLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHI 174
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 120
MEG++VPL+VKWADTEKE + L D Q+PS+FGALPM Y PPYNGYG
Sbjct: 175 MEGANVPLIVKWADTEKERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYG 231
Query: 121 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN--AMRGASPDLSSNMGPRNYAMPPSG 178
Y G+YG Y LPP+Q Q FH +I P NQGN A++G + L+ ++ PR P
Sbjct: 232 YHVPGTYG---YMLPPIQTQHAFHNVISP-NQGNGRALQGTA--LTESVPPR--LAPRRN 283
Query: 179 F-VGSGYPAVPGLQYPMPYPGGMLGHR-PLNNSPGSVSPAVANS 220
F G GLQYPM +P GM+ R PL +VSP ++N+
Sbjct: 284 FPTALGNYGYHGLQYPMAFPRGMIPPRLPLT----TVSPGISNN 323
Score = 538 (194.4 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 119/238 (50%), Positives = 147/238 (61%)
Query: 92 NNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 151
+++ D Q+PS+FGALPM Y PPYNGYGY G+YG Y LPP+Q Q FH +I P N
Sbjct: 203 SHVSRLDPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPPIQTQHAFHNVISP-N 258
Query: 152 QGN--AMRGASPDLSSNMGPRNYAMPPSGF-VGSGYPAVPGLQYPMPYPGGMLGHR-PLN 207
QGN A++G + L+ ++ PR P F G GLQYPM +P GM+ R PL
Sbjct: 259 QGNGRALQGTA--LTESVPPR--LAPRRNFPTALGNYGYHGLQYPMAFPRGMIPPRLPLT 314
Query: 208 NSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR 267
+VSP ++N+ Q EGP GANLFIY+IP+EF DQEL FQ FG+
Sbjct: 315 ----TVSPGISNNG------TSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGK 364
Query: 268 VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNK 325
VLSAKVFVDKATG+SKCFGF+SY+S A+AQNAI MNGC RDN Q +
Sbjct: 365 VLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQQQ 422
Score = 119 (46.9 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHK 60
+PK+++E ++ LF + + ++ I++ + + +GC FL T+E A + + + K
Sbjct: 19 VPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSFHNKKT 78
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S PL VK+AD E E
Sbjct: 79 LPGASSPLQVKYADGELE 96
Score = 68 (29.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 299
P LF+ +P+ + E+ + F +G + ++ C F+ YES A A
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCL-FLKYESKEQAVAA 165
Query: 300 IAMMNG 305
+ +NG
Sbjct: 166 MEALNG 171
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 261 (96.9 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
Identities = 52/93 (55%), Positives = 60/93 (64%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP G NLFIYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFGFVS+++P
Sbjct: 428 QREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPG 487
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R N+PY
Sbjct: 488 SAQAAIQSMNGFQIGMKRLKVQLKRPKDANRPY 520
Score = 188 (71.2 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K E +V LF +G+I++ ILRG SKGCAF+KY T +A AA+ A++G
Sbjct: 141 MLNKQQCEDDVRRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQT 200
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 201 MPGASSSLVVKFADTDKE 218
Score = 125 (49.1 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A++ +
Sbjct: 54 IPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTALHEQKT 113
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 114 LPGMNRPIQVKPADSE 129
Score = 66 (28.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ + ++ F++FG + + + G SK FV Y + A AQ AI+ +
Sbjct: 137 LFVGMLNKQQCEDDVRRLFESFGSIEECTI-LRGPDGNSKGCAFVKYSTHAEAQAAISAL 195
Query: 304 NG 305
+G
Sbjct: 196 HG 197
Score = 49 (22.3 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
Identities = 17/59 (28%), Positives = 22/59 (37%)
Query: 97 ADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNA 155
A QH + LP P +G G G +P + GF G+ PP G A
Sbjct: 275 AQMQHMATINGLPGAPMTPTSG-GSTPPGITAPTVTSIPSPISVNGFTGLPPPQANGQA 332
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 275 (101.9 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 443 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 502
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
S+Q AI MNG R +KPY
Sbjct: 503 SSQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 535
Score = 201 (75.8 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 62/215 (28%), Positives = 99/215 (46%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS YG I++ +ILRG S+GCAF+ + ++ A +A+++++
Sbjct: 152 MISKKCNENDIRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQT 211
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 120
MEG S P+VVK+ADT+K+ NA S +L G +G P Y
Sbjct: 212 MEGCSSPIVVKFADTQKDKEQKRIAQQLQQQMQQLNAASMWGNLTGLNSLG--PQYLAL- 268
Query: 121 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFV 180
Q S S G L PM + +A + A+P SS + + P S
Sbjct: 269 LQQSASSGNALNNLHPMSGLNAMQNLAALAAAASATQ-ATPTGSSAL--TTSSSPLSVLT 325
Query: 181 GSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 215
SG P+ G + G P +++ SV+P
Sbjct: 326 SSGTPS--GQPAQSAWDAYKAGSSPTSSTSSSVNP 358
Score = 129 (50.5 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P+ SE ++ LF YG + ++ +LR Q SKGC F+ Y T++ AL A A++
Sbjct: 61 IPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQNALHNM 120
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 121 KILPGMHHPIQMKPADSEK 139
Score = 60 (26.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 18/88 (20%), Positives = 40/88 (45%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ I ++ + ++ F +G++ ++ + G+S+ FV++ + AQ+AI M
Sbjct: 148 LFVGMISKKCNENDIRLMFSPYGQIEECRI-LRGPDGLSRGCAFVTFTARQMAQSAIKSM 206
Query: 304 N------GCXXXXXXXXXXXXRDNKQNK 325
+ GC +D +Q +
Sbjct: 207 HQSQTMEGCSSPIVVKFADTQKDKEQKR 234
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 277 (102.6 bits), Expect = 7.9e-42, Sum P(3) = 7.9e-42
Identities = 54/93 (58%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 393 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 452
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 453 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 485
Score = 171 (65.3 bits), Expect = 7.9e-42, Sum P(3) = 7.9e-42
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPIVVKFADTQKD 191
Score = 120 (47.3 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ E ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A A++
Sbjct: 23 VPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KILPGMHHPIQMKPADSEK 101
Score = 71 (30.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F FG++ ++ + G+S+ FV++ + A AQ AI AM
Sbjct: 110 LFIGMISKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQAQTMEGCSSPIVVKFADTQKDKEQKR 196
Score = 37 (18.1 bits), Expect = 7.9e-42, Sum P(3) = 7.9e-42
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 182 SGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 215
SG A+ P+ G P ++S SV+P
Sbjct: 277 SGTAALTSSSSPLSVLTSSAGSSPSSSSSSSVNP 310
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 266 (98.7 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 53/93 (56%), Positives = 61/93 (65%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP G NLFIYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFGFVS+++PA
Sbjct: 269 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPA 328
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R N+PY
Sbjct: 329 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 361
Score = 189 (71.6 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 15 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 74
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 75 MPGASSSLVVKFADTDKE 92
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 277 (102.6 bits), Expect = 2.9e-41, Sum P(2) = 2.9e-41
Identities = 64/152 (42%), Positives = 81/152 (53%)
Query: 176 PSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQ 235
P+G + A PGL P P+PG + P ++ P +A P
Sbjct: 275 PNGDAATLQHAFPGL--P-PFPG-VAFPAVYGQFPQALPPPLAAVAPTQREDFLMFPGCS 330
Query: 236 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 295
I GP G NLFIYH+PQEFGD EL F FG V+S+KVF+D+AT SKCFGFVS+++PAS
Sbjct: 331 ISGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPAS 390
Query: 296 AQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
AQ AI MNG R ++PY
Sbjct: 391 AQAAIQAMNGFQIGMKRLKVQLKRPKDASRPY 422
Score = 180 (68.4 bits), Expect = 2.9e-41, Sum P(2) = 2.9e-41
Identities = 36/78 (46%), Positives = 54/78 (69%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K +E +V +F +GTI++ ILRG SKGCAF+K+ ++++A +A+ ++G
Sbjct: 61 MLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNLHGSQT 120
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADTEKE
Sbjct: 121 MPGASSSLVVKYADTEKE 138
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 260 (96.6 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 60/135 (44%), Positives = 71/135 (52%)
Query: 195 PYPGGMLGHRPLNNSP--GSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 252
PY + G L N G+ S V S QIEGP G+NLFIYH+PQE
Sbjct: 764 PYSSSLSG---LTNGAAYGAASQPVTTS--ALQAAAAGVTGKQIEGPDGSNLFIYHLPQE 818
Query: 253 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 312
F D +L + F FG VLSAKVF+DK T +SKCFGFVSY++P SA AI M+G
Sbjct: 819 FIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGSKR 878
Query: 313 XXXXXXRDNKQNKPY 327
R KPY
Sbjct: 879 LKVQLKRSKDAAKPY 893
Score = 217 (81.4 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 68/220 (30%), Positives = 105/220 (47%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K +EA+V LF+ +GTI++ +LR SKGCAF+ + TK+ A+ A++A++
Sbjct: 388 MLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQT 447
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXN-NLPN---ADSQHPSLFGALPMGYAPPY 116
MEG S PLVVK+ADT+KE N P+ A + P++ A + APP
Sbjct: 448 MEGCSAPLVVKFADTQKEKDQKKMQQIHAFCGINTPSGATAGAATPTINAATALIAAPPS 507
Query: 117 NGYGYQASGSYGLMQYRLPPMQNQPGFHGIIP----PVNQGNAMRGA-SPDLSSNMGPRN 171
G + + S +P +Q Q G P P+N A+ + +P+L +
Sbjct: 508 AG---RTNPSMAAALAAVPQVQ-QAGSAATAPTTLVPLNSTTALSASLTPNLLATNAAHQ 563
Query: 172 YAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPG 211
A + ++G+ A LQ G G P + PG
Sbjct: 564 GAAAAAAYLGADPAAAAHLQLYQQLHG--YGLSPAHYLPG 601
Score = 115 (45.5 bits), Expect = 5.0e-33, Sum P(3) = 5.0e-33
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAINGKHK 60
+PK E + +F +G + L +LR + S+GC F+ Y T++ AL A +A++
Sbjct: 302 IPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDALHNIKT 361
Query: 61 MEGSSVPLVVKWADTE 76
++G P+ +K AD+E
Sbjct: 362 LDGMHHPIQMKPADSE 377
Score = 45 (20.9 bits), Expect = 5.0e-33, Sum P(3) = 5.0e-33
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 132 YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQ 191
Y L P PG + PP N + + SP + G ++ + + P + G
Sbjct: 591 YGLSPAHYLPGLNFHHPPENSAHHSQH-SPGIG---GASAASLSAAAATAASNP-LGGAP 645
Query: 192 YPMPYPGGMLGH 203
P P P GH
Sbjct: 646 PPTPTPTSSAGH 657
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 262 (97.3 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 52/93 (55%), Positives = 60/93 (64%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP G NL IYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFGFVS+++PA
Sbjct: 263 QREGPEGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPA 322
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R N+PY
Sbjct: 323 SAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 355
Score = 189 (71.6 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 7 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 66
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 67 MPGASSSLVVKFADTDKE 84
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 265 (98.3 bits), Expect = 7.1e-41, Sum P(2) = 7.1e-41
Identities = 75/184 (40%), Positives = 93/184 (50%)
Query: 148 PPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPG--GMLGH 203
PPV + AS L +N G Y A P+ + A G+Q Y YP G++G
Sbjct: 283 PPVPAAPNGQSASEALYTN-GVHPYQAQSPA--LDPLQQAYTGMQHYTATYPAAYGLVG- 338
Query: 204 RPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQ 263
+P + P V A P Q EGP G N+FIYH+PQEF D E+ F
Sbjct: 339 QPFPHQPTLV--AQQPQQPQQLQ--------QREGPEGCNIFIYHLPQEFTDSEMLQMFL 388
Query: 264 AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQ 323
FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG R
Sbjct: 389 PFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 448
Query: 324 NKPY 327
N+PY
Sbjct: 449 NRPY 452
Score = 194 (73.4 bits), Expect = 7.1e-41, Sum P(2) = 7.1e-41
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K +S+A+V +F +G+I++ +LRG SKGCAF+KY++ +A AA+ A++G
Sbjct: 100 MLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRT 159
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 160 LPGASSSLVVKFADTEKE 177
Score = 125 (49.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ +F +G I +L +++ KGCAFL Y +E AL A A++ +
Sbjct: 14 IPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 74 LPGMNRPIQVKPADSE 89
Score = 87 (35.7 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
EG LF+ + ++ D ++ F+ FG + V + G SK FV Y+S A A
Sbjct: 89 EGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTV-LRGPDGASKGCAFVKYQSNAEA 147
Query: 297 QNAIAMMNG 305
Q AI+ ++G
Sbjct: 148 QAAISALHG 156
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 266 (98.7 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 53/93 (56%), Positives = 60/93 (64%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD+AT SKCFGFVS+++P
Sbjct: 262 QREGPEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPT 321
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R N+PY
Sbjct: 322 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 354
Score = 183 (69.5 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 38/78 (48%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ +++G
Sbjct: 9 MLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSLHGSQT 68
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 69 MPGASSSLVVKFADTDKE 86
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 276 (102.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 305 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 364
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 365 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 397
Score = 170 (64.9 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 27 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 86
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 87 MEGCSSPIVVKFADTQKD 104
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 276 (102.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 311 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 370
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 371 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 403
Score = 170 (64.9 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 27 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 86
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 87 MEGCSSPIVVKFADTQKD 104
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 275 (101.9 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 493 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 552
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 553 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 585
Score = 183 (69.5 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 45/129 (34%), Positives = 67/129 (51%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS YG I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 213 MVSKKCNENDIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 272
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 120
MEG S P+VVK+ADT+K+ N+ S SL G G P Y
Sbjct: 273 MEGCSSPMVVKFADTQKDKEQRRLQQQLAQQMQQLNSASAWGSLTGLT--GLTPQYLALL 330
Query: 121 YQASGSYGL 129
QA+ S L
Sbjct: 331 QQATSSSNL 339
Score = 129 (50.5 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + ILR Q SKGC F+ + T++ AL A A++
Sbjct: 122 IPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 181
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 182 KTLTGMHHPIQMKPADSEK 200
Score = 74 (31.1 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F +G++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 209 LFIGMVSKKCNENDIRVMFSPYGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 267
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 268 HQSQTMEGCSSPMVVKFADTQKDKEQRR 295
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 279 (103.3 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 215 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 274
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 375 PTLYNQN-LLAQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 433
Query: 275 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 434 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486
Score = 172 (65.6 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPMVVKFADTQKD 191
Score = 125 (49.1 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A A++
Sbjct: 23 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KVLPGMHHPIQMKPADSEK 101
Score = 71 (30.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F +FG++ ++ + G+S+ FV++ + A AQ AI AM
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRI-LRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQAQTMEGCSSPMVVKFADTQKDKEQKR 196
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 279 (103.3 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 215 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 274
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 375 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 433
Query: 275 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 434 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486
Score = 172 (65.6 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPMVVKFADTQKD 191
Score = 125 (49.1 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A A++
Sbjct: 23 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KVLPGMHHPIQMKPADSEK 101
Score = 71 (30.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F +FG++ ++ + G+S+ FV++ + A AQ AI AM
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRI-LRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQAQTMEGCSSPMVVKFADTQKDKEQKR 196
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 279 (103.3 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 215 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 274
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 375 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 433
Query: 275 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 434 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486
Score = 172 (65.6 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPMVVKFADTQKD 191
Score = 126 (49.4 bits), Expect = 4.5e-35, Sum P(2) = 4.5e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P+ SE ++ LF YG + ++ ILR Q SKGC F+ + T++ AL A A++
Sbjct: 23 VPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KVLPGMHHPIQMKPADSEK 101
Score = 67 (28.6 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F +FG++ ++ + G+S+ FV++ + AQ AI AM
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRI-LRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQAQTMEGCSSPMVVKFADTQKDKEQKR 196
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 279 (103.3 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 215 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 274
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 376 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 434
Query: 275 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 435 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 487
Score = 172 (65.6 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPMVVKFADTQKD 191
Score = 126 (49.4 bits), Expect = 4.6e-35, Sum P(2) = 4.6e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P+ SE ++ LF YG + ++ ILR Q SKGC F+ + T++ AL A A++
Sbjct: 23 VPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KVLPGMHHPIQMKPADSEK 101
Score = 67 (28.6 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F +FG++ ++ + G+S+ FV++ + AQ AI AM
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRI-LRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQAQTMEGCSSPMVVKFADTQKDKEQKR 196
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 279 (103.3 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 215 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 274
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 376 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 434
Query: 275 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 435 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 487
Score = 172 (65.6 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPMVVKFADTQKD 191
Score = 126 (49.4 bits), Expect = 4.6e-35, Sum P(2) = 4.6e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P+ SE ++ LF YG + ++ ILR Q SKGC F+ + T++ AL A A++
Sbjct: 23 VPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KVLPGMHHPIQMKPADSEK 101
Score = 67 (28.6 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F +FG++ ++ + G+S+ FV++ + AQ AI AM
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRI-LRGPDGLSRGCAFVTFTTRTMAQTAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQAQTMEGCSSPMVVKFADTQKDKEQKR 196
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 270 (100.1 bits), Expect = 8.5e-40, Sum P(2) = 8.5e-40
Identities = 71/187 (37%), Positives = 87/187 (46%)
Query: 142 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQYPMPYPGGM 200
G +G P Q +PD G Y A P+ V A G+Q+ YP
Sbjct: 278 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAYPAAY 335
Query: 201 LGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGN 260
P P ++ A P Q EGP G N+FIYH+PQEF D E+
Sbjct: 336 SLVAPAFPQPPALV-AQQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQ 394
Query: 261 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRD 320
F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG R
Sbjct: 395 MFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 454
Query: 321 NKQNKPY 327
N+PY
Sbjct: 455 KDANRPY 461
Score = 179 (68.1 bits), Expect = 8.5e-40, Sum P(2) = 8.5e-40
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++
Sbjct: 101 MLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT 160
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 161 LPGASSSLVVKFADTEKE 178
Score = 116 (45.9 bits), Expect = 3.5e-33, Sum P(2) = 3.5e-33
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A++ +
Sbjct: 14 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 74 LPGMNRPIQVKPADSE 89
Score = 63 (27.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
LF+ + ++ D+++ F+ FG + V + G SK FV +++ A AQ AI
Sbjct: 97 LFVGMLGKQQTDEDVRKMFEPFGTIDECTV-LRGPDGTSKGCAFVKFQTHAEAQAAI 152
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 279 (103.3 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 215 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 274
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 402 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 460
Query: 275 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 461 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 513
Score = 172 (65.6 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 141 MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 200
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 201 MEGCSSPMVVKFADTQKD 218
Score = 125 (49.1 bits), Expect = 8.9e-35, Sum P(2) = 8.9e-35
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A A++
Sbjct: 50 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 109
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 110 KVLPGMHHPIQMKPADSEK 128
Score = 71 (30.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F +FG++ ++ + G+S+ FV++ + A AQ AI AM
Sbjct: 137 LFIGMISKKCTENDIRVMFSSFGQIEECRI-LRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 196 HQAQTMEGCSSPMVVKFADTQKDKEQKR 223
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 279 (103.3 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 215 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 274
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 403 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 461
Query: 275 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 462 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 514
Score = 172 (65.6 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 141 MISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 200
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 201 MEGCSSPMVVKFADTQKD 218
Score = 125 (49.1 bits), Expect = 9.0e-35, Sum P(2) = 9.0e-35
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A A++
Sbjct: 50 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 109
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 110 KVLPGMHHPIQMKPADSEK 128
Score = 71 (30.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F +FG++ ++ + G+S+ FV++ + A AQ AI AM
Sbjct: 137 LFIGMISKKCTENDIRVMFSSFGQIEECRI-LRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 196 HQAQTMEGCSSPMVVKFADTQKDKEQKR 223
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 277 (102.6 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 54/93 (58%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 397 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 456
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 457 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 489
Score = 171 (65.3 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPIVVKFADTQKD 191
Score = 120 (47.3 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ E ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A A++
Sbjct: 23 VPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KILPGMHHPIQMKPADSEK 101
Score = 71 (30.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F FG++ ++ + G+S+ FV++ + A AQ AI AM
Sbjct: 110 LFIGMISKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFTTRAMAQTAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQAQTMEGCSSPIVVKFADTQKDKEQKR 196
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 276 (102.2 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 392 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 451
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 452 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 484
Score = 170 (64.9 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPIVVKFADTQKD 191
Score = 128 (50.1 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 23 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KTLPGMHHPIQMKPADSEK 101
Score = 77 (32.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQSQTMEGCSSPIVVKFADTQKDKEQRR 196
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 276 (102.2 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 392 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 451
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 452 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 484
Score = 170 (64.9 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPIVVKFADTQKD 191
Score = 128 (50.1 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 23 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KTLPGMHHPIQMKPADSEK 101
Score = 77 (32.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQSQTMEGCSSPIVVKFADTQKDKEQRR 196
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 260 (96.6 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 56/117 (47%), Positives = 65/117 (55%)
Query: 211 GSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS 270
G VSPA P Q EGP G N+FIYH+PQEF D E+ F FG V+S
Sbjct: 347 GLVSPAFTQP-PAILTQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVIS 405
Query: 271 AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
AKVFVD+AT SKCFGFVS+++P SAQ AI MNG R N+PY
Sbjct: 406 AKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPKDANRPY 462
Score = 186 (70.5 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +G I + +LRG TSKGCAF+K++T +A AA+ A++G
Sbjct: 101 MLGKQQTDEDVRRMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRT 160
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 161 LPGASSSLVVKFADTEKE 178
Score = 124 (48.7 bits), Expect = 7.4e-33, Sum P(2) = 7.4e-33
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ +F +G I +L +++ KGCAFL Y +E AL A A++ +
Sbjct: 14 IPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 74 LPGMNRPIQVKPADSE 89
Score = 67 (28.6 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ D+++ F+ FG + V + G SK FV +++ AQ AI +
Sbjct: 97 LFVGMLGKQQTDEDVRRMFETFGNIDECTV-LRGPDGTSKGCAFVKFQTHTEAQAAINAL 155
Query: 304 NG 305
+G
Sbjct: 156 HG 157
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 276 (102.2 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 396 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 455
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 456 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488
Score = 170 (64.9 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPIVVKFADTQKD 191
Score = 128 (50.1 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 23 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KTLPGMHHPIQMKPADSEK 101
Score = 77 (32.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQSQTMEGCSSPIVVKFADTQKDKEQRR 196
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 276 (102.2 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 396 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 455
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 456 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488
Score = 170 (64.9 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPIVVKFADTQKD 191
Score = 128 (50.1 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 23 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KTLPGMHHPIQMKPADSEK 101
Score = 77 (32.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQSQTMEGCSSPIVVKFADTQKDKEQRR 196
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 276 (102.2 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 402 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 461
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 462 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 494
Score = 170 (64.9 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 120 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 179
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 180 MEGCSSPIVVKFADTQKD 197
Score = 128 (50.1 bits), Expect = 7.0e-35, Sum P(2) = 7.0e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 29 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 88
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 89 KTLPGMHHPIQMKPADSEK 107
Score = 77 (32.2 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 116 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 174
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 175 HQSQTMEGCSSPIVVKFADTQKDKEQRR 202
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 276 (102.2 bits), Expect = 2.9e-39, Sum P(2) = 2.9e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 406 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 465
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 466 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 498
Score = 170 (64.9 bits), Expect = 2.9e-39, Sum P(2) = 2.9e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 114 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 173
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 174 MEGCSSPIVVKFADTQKD 191
Score = 128 (50.1 bits), Expect = 7.5e-35, Sum P(2) = 7.5e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 23 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 82
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 83 KTLPGMHHPIQMKPADSEK 101
Score = 77 (32.2 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 168
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 169 HQSQTMEGCSSPIVVKFADTQKDKEQRR 196
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 276 (102.2 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 416 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 475
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 476 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
Score = 170 (64.9 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 138 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 197
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 198 MEGCSSPIVVKFADTQKD 215
Score = 128 (50.1 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 47 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 106
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 107 KTLPGMHHPIQMKPADSEK 125
Score = 77 (32.2 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 134 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 192
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 193 HQSQTMEGCSSPIVVKFADTQKDKEQRR 220
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 276 (102.2 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 416 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 475
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 476 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
Score = 170 (64.9 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 138 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 197
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 198 MEGCSSPIVVKFADTQKD 215
Score = 128 (50.1 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 47 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 106
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 107 KTLPGMHHPIQMKPADSEK 125
Score = 77 (32.2 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 134 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 192
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 193 HQSQTMEGCSSPIVVKFADTQKDKEQRR 220
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 276 (102.2 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 416 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 475
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 476 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
Score = 170 (64.9 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 138 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 197
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 198 MEGCSSPIVVKFADTQKD 215
Score = 128 (50.1 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 47 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 106
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 107 KTLPGMHHPIQMKPADSEK 125
Score = 77 (32.2 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 134 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 192
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 193 HQSQTMEGCSSPIVVKFADTQKDKEQRR 220
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 276 (102.2 bits), Expect = 4.1e-39, Sum P(2) = 4.1e-39
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 429 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 488
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 489 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521
Score = 170 (64.9 bits), Expect = 4.1e-39, Sum P(2) = 4.1e-39
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 145 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 204
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 205 MEGCSSPIVVKFADTQKD 222
Score = 128 (50.1 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P++ SE E+ LF YG + + +LR Q SKGC F+ + T++ AL A A++
Sbjct: 54 IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNI 113
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 114 KTLPGMHHPIQMKPADSEK 132
Score = 77 (32.2 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI + ++ + ++ F FG++ ++ + G+S+ FV++ + A AQNAI AM
Sbjct: 141 LFIGMVSKKCNENDIRVMFSPFGQIEECRI-LRGPDGLSRGCAFVTFSTRAMAQNAIKAM 199
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 200 HQSQTMEGCSSPIVVKFADTQKDKEQRR 227
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 264 (98.0 bits), Expect = 4.6e-39, Sum P(2) = 4.6e-39
Identities = 71/191 (37%), Positives = 86/191 (45%)
Query: 142 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 199
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 277 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 334
Query: 200 MLGHRPLNNSPGSV---SPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQ 256
P P ++ P Q EGP G N+FIYH+PQEF D
Sbjct: 335 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDS 394
Query: 257 ELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXX 316
E+ F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 395 EILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 454
Query: 317 XXRDNKQNKPY 327
R N+PY
Sbjct: 455 LKRPKDANRPY 465
Score = 179 (68.1 bits), Expect = 4.6e-39, Sum P(2) = 4.6e-39
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++
Sbjct: 100 MLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT 159
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 160 LPGASSSLVVKFADTEKE 177
Score = 116 (45.9 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A++ +
Sbjct: 14 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 74 LPGMNRPIQVKPADSE 89
Score = 63 (27.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
LF+ + ++ D+++ F+ FG + V + G SK FV +++ A AQ AI
Sbjct: 96 LFVGMLGKQQTDEDVRKMFEPFGTIDECTV-LRGPDGTSKGCAFVKFQTHAEAQAAI 151
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 268 (99.4 bits), Expect = 4.6e-39, Sum P(2) = 4.6e-39
Identities = 72/188 (38%), Positives = 87/188 (46%)
Query: 142 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 199
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 355 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 412
Query: 200 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELG 259
P P ++ A P Q EGP G N+FIYH+PQEF D E+
Sbjct: 413 YSLVAPAFPQPPALV-AQQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEIL 471
Query: 260 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXR 319
F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG R
Sbjct: 472 QMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 531
Query: 320 DNKQNKPY 327
N+PY
Sbjct: 532 PKDANRPY 539
Score = 179 (68.1 bits), Expect = 4.6e-39, Sum P(2) = 4.6e-39
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++
Sbjct: 178 MLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT 237
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 238 LPGASSSLVVKFADTEKE 255
Score = 116 (45.9 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A++ +
Sbjct: 91 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 150
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 151 LPGMNRPIQVKPADSE 166
Score = 63 (27.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
LF+ + ++ D+++ F+ FG + V + G SK FV +++ A AQ AI
Sbjct: 174 LFVGMLGKQQTDEDVRKMFEPFGTIDECTV-LRGPDGTSKGCAFVKFQTHAEAQAAI 229
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 259 (96.2 bits), Expect = 4.9e-39, Sum P(2) = 4.9e-39
Identities = 56/117 (47%), Positives = 65/117 (55%)
Query: 211 GSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS 270
G VSPA P Q EGP G N+FIYH+PQEF D E+ F FG V+S
Sbjct: 347 GLVSPAFTQP-PAILQQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVIS 405
Query: 271 AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
AKVFVD+AT SKCFGFVS+++P SAQ AI MNG R N+PY
Sbjct: 406 AKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 462
Score = 184 (69.8 bits), Expect = 4.9e-39, Sum P(2) = 4.9e-39
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +G I + +LRG TSKGCAF+K++T +A AA+ A++G
Sbjct: 101 MLGKQQTDEDVRRMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRT 160
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 161 LPGASSSLVVKFADTEKE 178
Score = 124 (48.7 bits), Expect = 9.6e-33, Sum P(2) = 9.6e-33
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ +F +G I +L +++ KGCAFL Y +E AL A A++ +
Sbjct: 14 IPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 74 LPGMNRPIQVKPADSE 89
Score = 66 (28.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ D+++ F+ FG + V + G SK FV +++ AQ AI +
Sbjct: 97 LFVGMLGKQQTDEDVRRMFEPFGNIDECTV-LRGPDGTSKGCAFVKFQTHTEAQAAINAL 155
Query: 304 NG 305
+G
Sbjct: 156 HG 157
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 263 (97.6 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 71/189 (37%), Positives = 86/189 (45%)
Query: 142 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 199
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 279 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 336
Query: 200 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI-EGPPGANLFIYHIPQEFGDQEL 258
P P ++ P Q EGP G N+FIYH+PQEF D E+
Sbjct: 337 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEI 396
Query: 259 GNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXX 318
F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 397 LQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 456
Query: 319 RDNKQNKPY 327
R N+PY
Sbjct: 457 RPKDANRPY 465
Score = 179 (68.1 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++
Sbjct: 102 MLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT 161
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 162 LPGASSSLVVKFADTEKE 179
Score = 116 (45.9 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A++ +
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 74
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 75 LPGMNRPIQVKPADSE 90
Score = 63 (27.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
LF+ + ++ D+++ F+ FG + V + G SK FV +++ A AQ AI
Sbjct: 98 LFVGMLGKQQTDEDVRKMFEPFGTIDECTV-LRGPDGTSKGCAFVKFQTHAEAQAAI 153
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 262 (97.3 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
Identities = 71/195 (36%), Positives = 98/195 (50%)
Query: 135 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 193
PP+ G++ P+ G A G P + P + +G V YPA P +
Sbjct: 302 PPLLGTTAVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 355
Query: 194 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 252
+ P G+ + + + +++P +A+S P Q EGP G NLFIYH+PQE
Sbjct: 356 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 410
Query: 253 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 312
FGD EL F FG ++S+KVF+D+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 411 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKR 470
Query: 313 XXXXXXRDNKQNKPY 327
R PY
Sbjct: 471 LKVQLKRPKDPGHPY 485
Score = 181 (68.8 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
Identities = 37/78 (47%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I + +LRG +SKGCAF+K+ + +A AA+ A++G
Sbjct: 140 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 199
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 200 MPGASSSLVVKFADTDKE 217
Score = 122 (48.0 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y ++ A+ A A++ +
Sbjct: 52 IPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKT 111
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 112 LPGMARPIQVKPADSE 127
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 257 (95.5 bits), Expect = 9.6e-39, Sum P(2) = 9.6e-39
Identities = 51/93 (54%), Positives = 60/93 (64%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP G N+FIYH+PQEF D E+ F FG V+SAKVFVD+AT SKCFGFVS+++PA
Sbjct: 323 QREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPA 382
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R N+PY
Sbjct: 383 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 415
Score = 179 (68.1 bits), Expect = 9.6e-39, Sum P(2) = 9.6e-39
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++
Sbjct: 101 MLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT 160
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 161 LPGASSSLVVKFADTEKE 178
Score = 116 (45.9 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A++ +
Sbjct: 14 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 74 LPGMNRPIQVKPADSE 89
Score = 63 (27.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
LF+ + ++ D+++ F+ FG + V + G SK FV +++ A AQ AI
Sbjct: 97 LFVGMLGKQQTDEDVRKMFEPFGTIDECTV-LRGPDGTSKGCAFVKFQTHAEAQAAI 152
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 261 (96.9 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 71/190 (37%), Positives = 86/190 (45%)
Query: 142 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 199
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 278 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 335
Query: 200 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI--EGPPGANLFIYHIPQEFGDQE 257
P P ++ P Q EGP G N+FIYH+PQEF D E
Sbjct: 336 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSE 395
Query: 258 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXX 317
+ F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 396 ILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 455
Query: 318 XRDNKQNKPY 327
R N+PY
Sbjct: 456 KRPKDANRPY 465
Score = 179 (68.1 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++
Sbjct: 101 MLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT 160
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 161 LPGASSSLVVKFADTEKE 178
Score = 116 (45.9 bits), Expect = 4.1e-32, Sum P(2) = 4.1e-32
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A++ +
Sbjct: 14 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 74 LPGMNRPIQVKPADSE 89
Score = 63 (27.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
LF+ + ++ D+++ F+ FG + V + G SK FV +++ A AQ AI
Sbjct: 97 LFVGMLGKQQTDEDVRKMFEPFGTIDECTV-LRGPDGTSKGCAFVKFQTHAEAQAAI 152
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 261 (96.9 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 71/190 (37%), Positives = 86/190 (45%)
Query: 142 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 199
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 279 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 336
Query: 200 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI--EGPPGANLFIYHIPQEFGDQE 257
P P ++ P Q EGP G N+FIYH+PQEF D E
Sbjct: 337 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSE 396
Query: 258 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXX 317
+ F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 397 ILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 456
Query: 318 XRDNKQNKPY 327
R N+PY
Sbjct: 457 KRPKDANRPY 466
Score = 179 (68.1 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++
Sbjct: 102 MLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT 161
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 162 LPGASSSLVVKFADTEKE 179
Score = 116 (45.9 bits), Expect = 4.2e-32, Sum P(2) = 4.2e-32
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A++ +
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 75
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 76 LPGMNRPIQVKPADSE 91
Score = 63 (27.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
LF+ + ++ D+++ F+ FG + V + G SK FV +++ A AQ AI
Sbjct: 98 LFVGMLGKQQTDEDVRKMFEPFGTIDECTV-LRGPDGTSKGCAFVKFQTHAEAQAAI 153
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 260 (96.6 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 71/195 (36%), Positives = 98/195 (50%)
Query: 135 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 193
PP+ G++ P+ G A G P + P + +G V YPA P +
Sbjct: 302 PPLLGTTAVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 355
Query: 194 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 252
+ P G+ + + + +++P +A+S P Q EGP G NLFIYH+PQE
Sbjct: 356 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 410
Query: 253 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 312
FGD EL F FG ++S+KVF+D+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 411 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 470
Query: 313 XXXXXXRDNKQNKPY 327
R PY
Sbjct: 471 LKVQLKRPKDPGHPY 485
Score = 181 (68.8 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 37/78 (47%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I + +LRG +SKGCAF+K+ + +A AA+ A++G
Sbjct: 140 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 199
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 200 MPGASSSLVVKFADTDKE 217
Score = 117 (46.2 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ LF +G I +L +L+ KGCAFL Y ++ A+ A A++ +
Sbjct: 52 IPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKT 111
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 112 LPGMARPIQVKPADSE 127
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 262 (97.3 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 71/195 (36%), Positives = 98/195 (50%)
Query: 135 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 193
PP+ G++ P+ G A G P + P + +G V YPA P +
Sbjct: 237 PPLLGTAAVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 290
Query: 194 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 252
+ P G+ + + + +++P +A+S P Q EGP G NLFIYH+PQE
Sbjct: 291 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 345
Query: 253 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 312
FGD EL F FG ++S+KVF+D+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 346 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKR 405
Query: 313 XXXXXXRDNKQNKPY 327
R PY
Sbjct: 406 LKVQLKRPKDPGHPY 420
Score = 172 (65.6 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKH 59
ML K SE +V LF +G I + +LRG +SK GCAF+K+ + +A AA+ A++G
Sbjct: 74 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQ 133
Query: 60 KMEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 134 TMPGASSSLVVKFADTDKE 152
Score = 86 (35.3 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 33 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76
T KGCAFL Y ++ A+ A A++ + + G + P+ VK AD+E
Sbjct: 19 THKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSE 62
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 279 (103.3 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 215 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 274
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 402 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 460
Query: 275 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 461 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 513
Score = 158 (60.7 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +IL G S+GCA + + T+ A A++A++
Sbjct: 141 MISKKCTENDIRVMFSSFGQIEECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQT 200
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 201 MEGCSSPMVVKFADTQKD 218
Score = 125 (49.1 bits), Expect = 8.9e-35, Sum P(2) = 8.9e-35
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAALEAINGK 58
+P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A A++
Sbjct: 50 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 109
Query: 59 HKMEGSSVPLVVKWADTEK 77
+ G P+ +K AD+EK
Sbjct: 110 KVLPGMHHPIQMKPADSEK 128
Score = 64 (27.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI-AM 302
LFI I ++ + ++ F +FG++ ++ G+S+ V++ + A AQ AI AM
Sbjct: 137 LFIGMISKKCTENDIRVMFSSFGQIEECRILWGP-DGLSRGCALVTFTTRAMAQTAIKAM 195
Query: 303 -----MNGCXXXXXXXXXXXXRDNKQNK 325
M GC +D +Q +
Sbjct: 196 HQAQTMEGCSSPMVVKFADTQKDKEQKR 223
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 238 (88.8 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
Identities = 78/223 (34%), Positives = 103/223 (46%)
Query: 92 NNLPNADSQHPSLFGALPMGYAPPYNGYGY-QASGSYGLMQYRLPPMQNQPGFHGIIPPV 150
N +P+ DS PSL G P+ Y+ Y Q Y N +G
Sbjct: 247 NFIPSIDSS-PSLLGTPPIIGDGIYDIYSNSQFDNKYNNNGGMGGNGGNNGNMYG--RNF 303
Query: 151 NQGN--AMRGASPDLSSNMGPRNYAMPPSGFVGSGY----PAVPGLQYPMPYPGGMLGHR 204
N GN M G + + +N GP M G +G+G P G+ P GM G+
Sbjct: 304 NNGNNGPMGGMNGNGMNNGGPMGNGMNNGGPMGNGMNNGGPMGNGMNNGGPMGNGMNGNG 363
Query: 205 PLNNSPGSVSPAVANSNPXXXXXXX--XXXXXQIEGPPGANLFIYHIPQEFGDQELGNAF 262
N G N+ Q GP G+NLF+Y+IP F D +L F
Sbjct: 364 MNGNGMGGPMGNGMNNGMGGMNQGGPMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLF 423
Query: 263 QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
Q +G V+SAKV+VDK TGVSK FGFVSY++PASA AI+ ++G
Sbjct: 424 QQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNLHG 466
Score = 200 (75.5 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
MLP++ E ++ LF +G ++D+ ILRG SKGC F+K++ +E AL+A+ +NG K
Sbjct: 97 MLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGM-K 155
Query: 61 MEGSSVPLVVKWADTEKE 78
++GS PLVVK+ADTEK+
Sbjct: 156 LDGSPNPLVVKFADTEKD 173
Score = 118 (46.6 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTS-KGCAFLKYETKEQALAALEAINGKHK 60
+PK+ +E E+ LF+ I+ + +++ +GCAF+ ++E+A A+E ++ K
Sbjct: 10 IPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQLHNSKK 69
Query: 61 MEGSSVPLVVKWADTEKE 78
+G L VK+AD+E+E
Sbjct: 70 FQGVLNNLQVKYADSEQE 87
Score = 75 (31.5 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
+ LF+ +P+ + ++++ F+ G V+ + SK GF+ +++ SA +AIA
Sbjct: 91 SKLFVGMLPRSYEEEQIRELFEPHG-VVEDICILRGPNSESKGCGFIKFDNRESALSAIA 149
Query: 302 MMNG 305
+NG
Sbjct: 150 TLNG 153
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 247 (92.0 bits), Expect = 8.8e-38, Sum P(2) = 8.8e-38
Identities = 48/93 (51%), Positives = 60/93 (64%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
++ GP G NLFIYH+PQEFGD EL F FG ++SAKVFVD+AT SKCFGFVSY++
Sbjct: 422 EVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIH 481
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
S+Q AI MNG R +++PY
Sbjct: 482 SSQAAITAMNGFQIGMKRLKVQLKRPRNESRPY 514
Score = 188 (71.2 bits), Expect = 8.8e-38, Sum P(2) = 8.8e-38
Identities = 39/78 (50%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE EV ALF+ +G + ++ +LRG+ SKGCAF+KY+ A A+ A++G
Sbjct: 130 MLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQT 189
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADTEKE
Sbjct: 190 MPGASSSLVVKYADTEKE 207
Score = 101 (40.6 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I + IL+ KGCAFL Y ++ A+ ++ +
Sbjct: 36 IPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKT 95
Query: 61 MEGSSVPLVVKWADTE 76
+ G + + VK ADT+
Sbjct: 96 LPGMNRAMQVKPADTD 111
Score = 64 (27.6 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LFI + ++ + E+ F FG + V + A G SK FV Y+ A AI+ +
Sbjct: 126 LFIGMLSKQQSEDEVRALFATFGELDEVTV-LRGADGASKGCAFVKYKHGLDAHMAISAL 184
Query: 304 NG 305
+G
Sbjct: 185 HG 186
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 260 (96.6 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 71/195 (36%), Positives = 98/195 (50%)
Query: 135 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 193
PP+ G++ P+ G A G P + P + +G V YPA P +
Sbjct: 306 PPLLGTATVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 359
Query: 194 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 252
+ P G+ + + + +++P +A+S P Q EGP G NLFIYH+PQE
Sbjct: 360 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 414
Query: 253 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 312
FGD EL F FG ++S+KVF+D+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 415 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKR 474
Query: 313 XXXXXXRDNKQNKPY 327
R PY
Sbjct: 475 LKVQLKRPKDPGHPY 489
Score = 172 (65.6 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKH 59
ML K SE +V LF +G I + +LRG +SK GCAF+K+ + +A AA+ A++G
Sbjct: 143 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQ 202
Query: 60 KMEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 203 TMPGASSSLVVKFADTDKE 221
Score = 58 (25.5 bits), Expect = 9.3e-26, Sum P(2) = 9.3e-26
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILR----GSQQTSKGCAFLKYETKEQALAA 51
+P+N+ E ++ LF +G I +L +L+ G + + ++ + E+A AA
Sbjct: 56 IPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGLRWWTHIRRDNPEEAPAA 109
>UNIPROTKB|F1SAI1 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
Uniprot:F1SAI1
Length = 371
Score = 232 (86.7 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 65/180 (36%), Positives = 81/180 (45%)
Query: 159 ASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVS 214
A P + S +G + +PP +G PA + PYP PL + V
Sbjct: 195 AVPSIPSPIGVNGFTGLPPQA---NGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQ 251
Query: 215 PAVANSNPXXXXXXXXXX--------XXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFG 266
A + P Q EGP G NLFI H+PQEFGD EL F FG
Sbjct: 252 QYAAAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFICHLPQEFGDAELMQMFLPFG 311
Query: 267 RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKP 326
+S+K FVD+ T SKCFGFVS+++PASAQ AI MNG R N+P
Sbjct: 312 NGISSKAFVDR-TNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRP 370
Score = 189 (71.6 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 25 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 84
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 85 MPGASSSLVVKFADTDKE 102
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 250 (93.1 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 74/224 (33%), Positives = 99/224 (44%)
Query: 111 GYAP-PYNGYGYQASGS-Y--GLMQYRLPPM--QNQPGFHGIIPPVNQGNAMRGASPDLS 164
GY+P P G A + Y G+ Y + + G I+P + M A+ +
Sbjct: 281 GYSPVPTQPTGQPAPDALYPNGVHPYPDEALSAERSAGEAPIMPQTHSWLVMLSAAQSPA 340
Query: 165 SNMGPRNYAMPPSGFVGSGYPAVPGLQYP-MPYPGGMLGHRPLNNSPGSVSPAVANSNPX 223
+ + P A + YPA L P P P ++ +P P
Sbjct: 341 APVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQP---------PPPPQQQQQ 391
Query: 224 XXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSK 283
Q + P G N+FIYH+PQEF D E+ F FG V+SAKVFVD+AT SK
Sbjct: 392 QQQQQQQQQQQQ-QRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 450
Query: 284 CFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
CFGFVS+++PASAQ AI MNG R N+PY
Sbjct: 451 CFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 494
Score = 179 (68.1 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++ +V +F +GTI + +LRG TSKGCAF+K++T +A AA+ ++
Sbjct: 101 MLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT 160
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 161 LPGASSSLVVKFADTEKE 178
Score = 116 (45.9 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A++ +
Sbjct: 14 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 74 LPGMNRPIQVKPADSE 89
Score = 63 (27.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
LF+ + ++ D+++ F+ FG + V + G SK FV +++ A AQ AI
Sbjct: 97 LFVGMLGKQQTDEDVRKMFEPFGTIDECTV-LRGPDGTSKGCAFVKFQTHAEAQAAI 152
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 122/342 (35%), Positives = 160/342 (46%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K E +V LF +G I++ +LR TSKGCAF+K+ ++ +A AA++ ++G
Sbjct: 140 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRT 199
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 120
M G+S LVVK ADT++E HP+ LP+G Y
Sbjct: 200 MTGASSSLVVKLADTDRERALRRMQQMAGQLGAF------HPA---PLPLGACGAYTTAI 250
Query: 121 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFV 180
Q + L Q PG + Q + S +++ + P PSG
Sbjct: 251 LQHQAAL------LAAAQG-PGLGQVAAVAAQMQHVAAFSL-VAAPLLPAAANTSPSG-- 300
Query: 181 GSGYPAVPGLQYPMPYPG-GMLGHRPLNNSPGS-------VSP-------AVANSNPXXX 225
+G A+PGL PM G G L + N PGS +SP A A +
Sbjct: 301 -NGPGALPGLPAPMGVNGFGSLNPQT-NGQPGSDSLYNNGLSPYPAAYPSAYAPVSTAFP 358
Query: 226 XXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF 285
Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD+AT SKCF
Sbjct: 359 QQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCF 418
Query: 286 GFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
GFVS+++P SAQ AI MNG R N+PY
Sbjct: 419 GFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 460
Score = 110 (43.8 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A++ +
Sbjct: 53 IPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKT 112
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK A +E
Sbjct: 113 LPGMNRPIQVKPAASE 128
Score = 75 (31.5 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ G++++ FQ FG + V + G SK FV + S AQ AI +
Sbjct: 136 LFVGMLGKQQGEEDVRRLFQPFGHIEECTV-LRSPDGTSKGCAFVKFGSQGEAQAAIQGL 194
Query: 304 NG 305
+G
Sbjct: 195 HG 196
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 123/351 (35%), Positives = 165/351 (47%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K E +V LF +G I++ +LR TSKGCAF+K+ ++ +A AA+++++G
Sbjct: 140 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRT 199
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN-----LP--------NADSQHPSLFGA 107
M G+S LVVK ADT++E LP A QH + A
Sbjct: 200 MAGASSSLVVKLADTDRERALRRMQQMAGQLGAFHPAPLPLGACGAYTTAILQHQAALLA 259
Query: 108 LPMGYA-PPYNGYGYQAS--GSYGLMQYRLPPMQ---NQP--GFHGIIPPVNQGNAMRGA 159
G P Q ++ L+ L P N P G G +P + + G
Sbjct: 260 AAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAAANSPPGGGPGTLPGLPAPIGVNGF 319
Query: 160 SPDLSSNMG-PRNYAMPPSGFVGSGYPAV-PGLQYPMPYP-GGMLGHRPLNNSPGSVSPA 216
P G P + ++ +G S YPA PG+ P+ GM H P + +P
Sbjct: 320 GPLTPQTNGQPGSDSLYNNGL--SPYPAQSPGVADPLQQAYAGM--HHYAAAYPSAYAP- 374
Query: 217 VANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD 276
V+ + P Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD
Sbjct: 375 VSTTFPQQPSALPQQ---QREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVD 431
Query: 277 KATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+AT SKCFGFVS+++P SAQ AI MNG R N+PY
Sbjct: 432 RATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 482
Score = 110 (43.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A++ +
Sbjct: 53 IPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKT 112
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK A +E
Sbjct: 113 LPGMNRPIQVKPAASE 128
Score = 77 (32.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ G++++ FQ FG + V + G SK FV + S AQ AI +
Sbjct: 136 LFVGMLGKQQGEEDVRRLFQPFGHIEECTV-LRSPDGTSKGCAFVKFGSQGEAQAAIQSL 194
Query: 304 NG 305
+G
Sbjct: 195 HG 196
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 112/333 (33%), Positives = 150/333 (45%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K E +V LF +G I++ +LR TSKGCAF+K+ ++ +A AA++ ++G
Sbjct: 140 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRT 199
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 120
M G+S LVVK ADT++E HP+ LP+G Y
Sbjct: 200 MTGASSSLVVKLADTDRERALRRMQQMAGQLGAF------HPA---PLPLGACGAYTTAI 250
Query: 121 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFV 180
Q + L + P + + V + + ++N P P
Sbjct: 251 LQHQAAL-LAAAQGPGLGQVAAVAAQMQHVAAFSLVAAPLLPAAANTSPGGNG--PGALP 307
Query: 181 GSGYP-AVPGLQYPMPYPGGMLGHRPLNNS-----PGSVSPAVANSNPXXXXXXXXXXXX 234
G P V G P G G L N+ P + A A ++
Sbjct: 308 GLPAPMGVNGFGSLTPQSNGQPGSDTLYNNGVSPYPAAYPSAYAPASTAFSQQPSALPQQ 367
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD+AT SKCFGFVS+++P
Sbjct: 368 QREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPT 427
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R N+PY
Sbjct: 428 SAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 460
Score = 110 (43.8 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A++ +
Sbjct: 53 IPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKT 112
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK A +E
Sbjct: 113 LPGMNRPIQVKPAASE 128
Score = 75 (31.5 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ G++++ FQ FG + V + G SK FV + S AQ AI +
Sbjct: 136 LFVGMLGKQQGEEDVRRLFQPFGHIEECTV-LRSPDGTSKGCAFVKFGSQGEAQAAIQGL 194
Query: 304 NG 305
+G
Sbjct: 195 HG 196
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 257 (95.5 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 51/93 (54%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
QIEGP G NLFIYH+PQEF D +L + F FG V+SAKVF+DK T +SKCFGFVS+++P
Sbjct: 719 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPD 778
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG + K +KPY
Sbjct: 779 SAQVAIKAMNGFQVGTKRLKVQLKKP-KDSKPY 810
Score = 174 (66.3 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 35/79 (44%), Positives = 54/79 (68%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K ++E +V LF ++G I++ +LR SKGCAF+ + TK A++A++ ++K
Sbjct: 450 MLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNK 509
Query: 61 -MEGSSVPLVVKWADTEKE 78
MEG + PLVVK+ADT+KE
Sbjct: 510 IMEGCTSPLVVKFADTQKE 528
Score = 121 (47.7 bits), Expect = 5.4e-31, Sum P(2) = 5.4e-31
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+PK++ E+++ +F YG + + +LR SKGC F+ + T+ AL A +A++
Sbjct: 364 VPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKT 423
Query: 61 MEGSSVPLVVKWADTE 76
+ G P+ +K AD+E
Sbjct: 424 LNGMYHPIQMKPADSE 439
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 121/351 (34%), Positives = 162/351 (46%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K E +V LF +G I++ +LR TSKGCAF+K+ ++ +A AA+++++G
Sbjct: 140 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRT 199
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN-----LP--------NADSQHPSLFGA 107
M G+S LVVK ADT++E LP A QH + A
Sbjct: 200 MAGASSSLVVKLADTDRERALRRMQQMAGQLGAFHPAPLPLGACGAYTTAILQHQAALLA 259
Query: 108 LPMGYA-PPYNGYGYQAS--GSYGLMQYRLPPMQ---NQP--GFHGIIPPVNQGNAMRGA 159
G P Q ++ L+ L P N P G G +P + + G
Sbjct: 260 AAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAAANSPPGGGPGTLPGLPAPIGVNGF 319
Query: 160 SPDLSSNMG-PRNYAMPPSGFVGSGYPAV-PGLQYPMPYP-GGMLGHRPLNNSPGSVSPA 216
P G P + ++ +G S YPA PG+ P+ GM H P + +P
Sbjct: 320 GPLTPQTNGQPGSDSLYNNGL--SPYPAQSPGVADPLQQAYAGM--HHYAAAYPSAYAPV 375
Query: 217 VANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD 276
+ Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD
Sbjct: 376 ----STTFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVD 431
Query: 277 KATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+AT SKCFGFVS+++P SAQ AI MNG R N+PY
Sbjct: 432 RATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 482
Score = 110 (43.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A++ +
Sbjct: 53 IPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKT 112
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK A +E
Sbjct: 113 LPGMNRPIQVKPAASE 128
Score = 77 (32.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ G++++ FQ FG + V + G SK FV + S AQ AI +
Sbjct: 136 LFVGMLGKQQGEEDVRRLFQPFGHIEECTV-LRSPDGTSKGCAFVKFGSQGEAQAAIQSL 194
Query: 304 NG 305
+G
Sbjct: 195 HG 196
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 251 (93.4 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 49/90 (54%), Positives = 58/90 (64%)
Query: 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 297
GP G N+FIYH+PQEF D E+ F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ
Sbjct: 353 GPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQ 412
Query: 298 NAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
AI MNG R N+PY
Sbjct: 413 TAIQAMNGFQIGMKRLKVQLKRPKDANRPY 442
Score = 167 (63.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKH 59
ML K S+ +V +F +G I + +LRG TSK GCAF+K+++ +A +A+ +++G
Sbjct: 101 MLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSR 160
Query: 60 KMEGSSVPLVVKWADTEKE 78
+ G+S LVVK+ADTEKE
Sbjct: 161 TLPGASSSLVVKFADTEKE 179
Score = 122 (48.0 bits), Expect = 9.0e-32, Sum P(2) = 9.0e-32
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ +F YG I +L +++ KGCAFL Y +E A+ A A++
Sbjct: 14 IPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSALHYSSG 73
Query: 61 MEGSSVPLVVKWADTE 76
G + P+ VK AD+E
Sbjct: 74 YSGMNRPIQVKPADSE 89
Score = 67 (28.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKC-FGFVSYESPASAQNAIAM 302
LF+ + ++ D+++ F+ FG + V + G SK FV ++S + AQ+AI
Sbjct: 97 LFVGMLGKQQSDEDVRKIFEPFGGIDECTV-LRGPDGTSKAGCAFVKFQSHSEAQSAINS 155
Query: 303 MNG 305
++G
Sbjct: 156 LHG 158
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 122/350 (34%), Positives = 162/350 (46%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K E +V LF +G I++ +LR TSKGCAF+K+ ++ +A AA+ ++G
Sbjct: 140 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRT 199
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN-----LP--------NADSQHPSLFGA 107
M G+S LVVK ADT++E LP A QH + A
Sbjct: 200 MAGASSSLVVKLADTDRERALRRMQQMAGHLGAFHPAPLPLGACGAYTTAILQHQAALLA 259
Query: 108 LPMGYA-PPYNGYGYQAS--GSYGLMQYRLPPM---QNQPGFH-GIIPPVNQGNAMRGAS 160
G P Q ++ L+ L P + PG G +P + + G
Sbjct: 260 AAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFG 319
Query: 161 PDLSSNMG-PRNYAMPPSGFVGSGYPAV-PGLQYPMPYP-GGMLGHRPLNNSPGSVSPAV 217
P G P + + +G S YPA PG+ P+ GM H P + +P V
Sbjct: 320 PLTPQTNGQPGSDTLYNNGL--SPYPAQSPGVADPLQQAYAGM--HHYAAAYPSAYAP-V 374
Query: 218 ANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 277
+ + P Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD+
Sbjct: 375 STAFPQQPSALPQQ---QREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDR 431
Query: 278 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
AT SKCFGFVS+++P SAQ AI MNG R N+PY
Sbjct: 432 ATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 481
Score = 110 (43.8 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A++ +
Sbjct: 53 IPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKT 112
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK A +E
Sbjct: 113 LPGMNRPIQVKPAASE 128
Score = 75 (31.5 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ G++++ FQ FG + V + G SK FV + S AQ AI +
Sbjct: 136 LFVGMLGKQQGEEDVRRLFQPFGHIEECTV-LRSPDGTSKGCAFVKFGSQGEAQAAIRGL 194
Query: 304 NG 305
+G
Sbjct: 195 HG 196
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 122/350 (34%), Positives = 162/350 (46%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K E +V LF +G I++ +LR TSKGCAF+K+ ++ +A AA+ ++G
Sbjct: 1 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRT 60
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN-----LP--------NADSQHPSLFGA 107
M G+S LVVK ADT++E LP A QH + A
Sbjct: 61 MAGASSSLVVKLADTDRERALRRMQQMAGHLGAFHPAPLPLGACGAYTTAILQHQAALLA 120
Query: 108 LPMGYA-PPYNGYGYQAS--GSYGLMQYRLPPM---QNQPGFH-GIIPPVNQGNAMRGAS 160
G P Q ++ L+ L P + PG G +P + + G
Sbjct: 121 AAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFG 180
Query: 161 PDLSSNMG-PRNYAMPPSGFVGSGYPAV-PGLQYPMPYP-GGMLGHRPLNNSPGSVSPAV 217
P G P + + +G S YPA PG+ P+ GM H P + +P V
Sbjct: 181 PLTPQTNGQPGSDTLYNNGL--SPYPAQSPGVADPLQQAYAGM--HHYAAAYPSAYAP-V 235
Query: 218 ANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 277
+ + P Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD+
Sbjct: 236 STAFPQQPSALPQQ---QREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDR 292
Query: 278 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
AT SKCFGFVS+++P SAQ AI MNG R N+PY
Sbjct: 293 ATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 342
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 283 (104.7 bits), Expect = 7.4e-36, Sum P(2) = 7.4e-36
Identities = 77/198 (38%), Positives = 98/198 (49%)
Query: 133 RLPPMQNQPGFH-GIIPPVNQGNAMRGASPDLSSNMG-PRNYAMPPSGFVGSGYPAV-PG 189
R P +QPG G +P + + G P G P + + +G S YPA PG
Sbjct: 238 RPPAATSQPGGGPGSLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGL--SPYPAQSPG 295
Query: 190 LQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHI 249
+ P+ + H P + +P V+ + P Q EGP G NLFIYH+
Sbjct: 296 VADPLQQAYAGMHHYAAY--PSAYAP-VSTAFPQQSSALPQQ---QREGPEGCNLFIYHL 349
Query: 250 PQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXX 309
PQEFGD EL F FG V+SAKVFVD+AT SKCFGFVS+++P SAQ AI MNG
Sbjct: 350 PQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIG 409
Query: 310 XXXXXXXXXRDNKQNKPY 327
R N+PY
Sbjct: 410 MKRLKVQLKRPKDANRPY 427
Score = 122 (48.0 bits), Expect = 7.4e-36, Sum P(2) = 7.4e-36
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K E +V LF +G I++ +LR TSKGCAF+K+ ++ +A AA+++++G
Sbjct: 101 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRT 160
Query: 61 M 61
M
Sbjct: 161 M 161
Score = 110 (43.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A++ +
Sbjct: 14 IPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK A +E
Sbjct: 74 LPGMNRPIQVKPAASE 89
Score = 77 (32.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ G++++ FQ FG + V + G SK FV + S AQ AI +
Sbjct: 97 LFVGMLGKQQGEEDVRRLFQPFGHIEECTV-LRSPDGTSKGCAFVKFGSQGEAQAAIQSL 155
Query: 304 NG 305
+G
Sbjct: 156 HG 157
Score = 56 (24.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 31/89 (34%), Positives = 41/89 (46%)
Query: 138 QNQPGFHGIIPPVNQGNAMRGASPDLSS---NMGPRNYAMPPSGFVGSGYPAVPGLQYPM 194
Q + G G+ P + A+ GA+ L N+GP SG V + PA+P + P
Sbjct: 170 QGEAG--GVGPGFSSPRAI-GAAQGLMGTALNLGPGL----GSGLVTAASPALP--RAPR 220
Query: 195 PYPG-GMLGHRPLNNSPGSVSPAVANSNP 222
P G G G RP +SP PA A S P
Sbjct: 221 PGAGRGGAGPRP--DSPTPRPPA-ATSQP 246
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 256 (95.2 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 50/91 (54%), Positives = 60/91 (65%)
Query: 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
EGP G NLFIYH+PQEFGD EL F FG V+S+KVF+D+AT SKCFGFVS+++PASA
Sbjct: 507 EGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASA 566
Query: 297 QNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
Q AI MNG R ++PY
Sbjct: 567 QAAIQAMNGFQIGMKRLKVQLKRPKDASRPY 597
Score = 162 (62.1 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 37/87 (42%), Positives = 53/87 (60%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K +E +V LF YG I++ +LRG SKGCAF+K+ T +A +A+ A++G
Sbjct: 230 MLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQT 289
Query: 61 M---------EGSSVPLVVKWADTEKE 78
M +G+S LVVK+ADT+KE
Sbjct: 290 MPTGSDSLLPQGASSSLVVKFADTDKE 316
Score = 127 (49.8 bits), Expect = 4.8e-32, Sum P(2) = 4.8e-32
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E A+ A A++ +
Sbjct: 143 IPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNALHEQKT 202
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 203 LPGMTRPIQVKPADSE 218
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 260 (96.6 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 47/70 (67%), Positives = 57/70 (81%)
Query: 236 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 295
++GP GANLFIYH+PQ+FGD +L N F FG +LSAKVF+DK T +SKCFGFVSYE+ S
Sbjct: 497 VKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQS 556
Query: 296 AQNAIAMMNG 305
A NAI+ MNG
Sbjct: 557 ATNAISAMNG 566
Score = 149 (57.5 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 45/166 (27%), Positives = 74/166 (44%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L K +E + +F+ +G I+D +LR S+GCAF+ + + A+ A + ++ M
Sbjct: 149 LSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTM 208
Query: 62 EGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGAL-PMGYAPPYNGYG 120
EG S PLVVK+ADT+K+ P + SL L P G
Sbjct: 209 EGCSAPLVVKFADTQKDKDVKTKSMITGSGAGSPKGGAA--SLLQNLNPALLQQLGGGQN 266
Query: 121 YQASGSY-GLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSS 165
YQA S L+ + Q ++ + GN + G +P +++
Sbjct: 267 YQAVASLLSLINGQQGQQQQHQQQQNVLGILGTGNPLLG-NPAMAA 311
Score = 117 (46.2 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+ +E + LF YG++ ILR S Q SKGC F+ + ++ A+ A A++
Sbjct: 62 IPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKV 121
Query: 61 MEGSSVPLVVKWADTE 76
+EG P+ +K ADTE
Sbjct: 122 IEGMHHPVQMKPADTE 137
Score = 54 (24.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LFI + ++ ++ L F FG + V D+ G S+ FV++ + + A A M
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 304 N 304
+
Sbjct: 203 H 203
>UNIPROTKB|F1SID9 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043484 GO:GO:0042835 GeneTree:ENSGT00560000076837
EMBL:CU856103 Ensembl:ENSSSCT00000014453 OMA:INQPITQ Uniprot:F1SID9
Length = 344
Score = 266 (98.7 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 57/116 (49%), Positives = 66/116 (56%)
Query: 215 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 274
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 230 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 288
Query: 275 VDKATGVSKCFG---FVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+DK T +SKCFG FVSY++P SAQ AI MNG R +KPY
Sbjct: 289 IDKQTNLSKCFGHTGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 344
Score = 108 (43.1 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 36 GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78
GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 1 GCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 43
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 191 (72.3 bits), Expect = 5.4e-29, Sum P(2) = 5.4e-29
Identities = 36/52 (69%), Positives = 40/52 (76%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFG 286
Q EGP G NLFIYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFG
Sbjct: 402 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFG 453
Score = 189 (71.6 bits), Expect = 5.4e-29, Sum P(2) = 5.4e-29
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 147 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 206
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 207 MPGASSSLVVKFADTDKE 224
Score = 126 (49.4 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A++ +
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 121 LPGMNRPIQVKPADSE 136
Score = 73 (30.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ + ++ F+AFG + + + G SK FV Y S A AQ AI +
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINAL 201
Query: 304 NG 305
+G
Sbjct: 202 HG 203
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 189 (71.6 bits), Expect = 3.8e-27, Sum P(3) = 3.8e-27
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 147 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 206
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 207 MPGASSSLVVKFADTDKE 224
Score = 126 (49.4 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A++ +
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 121 LPGMNRPIQVKPADSE 136
Score = 117 (46.2 bits), Expect = 3.8e-27, Sum P(3) = 3.8e-27
Identities = 23/34 (67%), Positives = 24/34 (70%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV 268
Q EGP G NLFIYH+PQEFGD EL F FG V
Sbjct: 402 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 435
Score = 89 (36.4 bits), Expect = 3.8e-27, Sum P(3) = 3.8e-27
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 285 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
FGFVS+++PASAQ AI MNG R N+PY
Sbjct: 432 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 474
Score = 73 (30.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ + ++ F+AFG + + + G SK FV Y S A AQ AI +
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINAL 201
Query: 304 NG 305
+G
Sbjct: 202 HG 203
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 186 (70.5 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 185 PAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN- 243
P G M G G+R P +V+ + N Q + P +N
Sbjct: 230 PFFYGQNSQMSQAMGNNGYRGYQQQP-NVNFGMMQGNQAFDYNQQQQQQQQQQQPNESND 288
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LFIY++P +GD+EL F +G V+S+KVF+DK T SKCFGFVSY++ SA AI +
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348
Query: 304 NG 305
NG
Sbjct: 349 NG 350
Score = 169 (64.5 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 8 EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 67
E ++ LF YG I+DL I+R KG F+KY T++++ AL I+GKH + GS++P
Sbjct: 119 EDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLP 178
Query: 68 LVVKWADTEKE 78
++VK+ADTE++
Sbjct: 179 IIVKFADTERQ 189
Score = 135 (52.6 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAALEAINGKHK 60
+P +++E VS +F+ +G I D+ I++ + SKGCAF+ + TKE+A AL N
Sbjct: 25 IPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTTNESGT 84
Query: 61 -MEGSSVPLVVKWADTEKE 78
+E + PL VK++D E E
Sbjct: 85 FLENMNKPLQVKYSDNEIE 103
Score = 51 (23.0 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LFI + DQ + F +G + + +K G K +GF+ Y + ++NA+ +
Sbjct: 109 LFIGMLGTSDEDQ-IRILFGNYGIIEDLNIVREK-DGKPKGYGFIKYSTRDESENALREI 166
Query: 304 NG 305
+G
Sbjct: 167 DG 168
Score = 47 (21.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 114 PPYNGYG-YQASGSYGLMQYRLPPMQNQ--PGFHGIIPPVNQG---NAMRGASPDLSSNM 167
PP N + YQ + Q + QNQ P F+G ++Q N RG + N
Sbjct: 200 PPQNPFNFYQQNQQQQQQQQQQQQQQNQYQPFFYGQNSQMSQAMGNNGYRGYQQQPNVNF 259
Query: 168 G 168
G
Sbjct: 260 G 260
Score = 41 (19.5 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 116 YNGYGYQASGSYGLMQ 131
Y GY Q + ++G+MQ
Sbjct: 248 YRGYQQQPNVNFGMMQ 263
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 189 (71.6 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 158 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 217
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 218 MPGASSSLVVKFADTDKE 235
Score = 126 (49.4 bits), Expect = 6.0e-18, Sum P(3) = 6.0e-18
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A++ +
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 121 LPGMNRPIQVKPADSE 136
Score = 111 (44.1 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 22/34 (64%), Positives = 23/34 (67%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV 268
Q EGP G NL IYH+PQEFGD EL F FG V
Sbjct: 414 QREGPEGCNLLIYHLPQEFGDAELMQMFLPFGFV 447
Score = 89 (36.4 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 285 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
FGFVS+++PASAQ AI MNG R N+PY
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
Score = 76 (31.8 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 239 PPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
PP + LF+ + ++ + ++ F+AFG + + + G SK FV Y S A A
Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEA 205
Query: 297 QNAIAMMNG 305
Q AI ++G
Sbjct: 206 QAAINALHG 214
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 183 (69.5 bits), Expect = 7.0e-26, Sum P(3) = 7.0e-26
Identities = 38/78 (48%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ +++G
Sbjct: 149 MLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSLHGSQT 208
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 209 MPGASSSLVVKFADTDKE 226
Score = 120 (47.3 bits), Expect = 7.0e-26, Sum P(3) = 7.0e-26
Identities = 45/147 (30%), Positives = 60/147 (40%)
Query: 128 GLMQYRLPPMQNQ---PGFHGI-IPPVNQGNAMRGASP-DLSSNMGPRNYAMPPSGFVGS 182
GL+ L P PG +P + + G SP +N P + + +G
Sbjct: 296 GLVAAPLTPSSGTSTPPGISTAPVPSIATPIGVNGFSPLPPQTNGQPTSETIYTNGI--H 353
Query: 183 GYPAV-PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPG 241
YPA P + P+ + H + P + A A + Q EGP G
Sbjct: 354 PYPAQSPTVADPLQQAYAGMQHYAV---PAAYPTAYAPISQAFPQQAPIIPQQQREGPEG 410
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRV 268
NLFIYH+PQEFGD EL F FG V
Sbjct: 411 CNLFIYHLPQEFGDAELTQMFLPFGFV 437
Score = 103 (41.3 bits), Expect = 7.9e-16, Sum P(3) = 7.9e-16
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E+++ LF +G I +L +L+ KGCAFL Y ++ AL A A++ +
Sbjct: 55 IPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSALHEQKT 114
Query: 61 MEGSS 65
+ G S
Sbjct: 115 LPGVS 119
Score = 83 (34.3 bits), Expect = 7.0e-26, Sum P(3) = 7.0e-26
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 285 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
FGFVS+++P SAQ AI MNG R N+PY
Sbjct: 434 FGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 476
Score = 79 (32.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
P LF+ + ++ + ++ F+ FG++ + + G SK FV Y S A AQ
Sbjct: 140 PEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTI-LRGPDGASKGCAFVKYSSHAEAQA 198
Query: 299 AIAMMNG 305
AI+ ++G
Sbjct: 199 AISSLHG 205
Score = 41 (19.5 bits), Expect = 9.4e-18, Sum P(3) = 9.4e-18
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 97 ADSQHPSLFGALPMGYAPPYNGYGYQA 123
A QH ++ A P YAP + QA
Sbjct: 371 AGMQHYAVPAAYPTAYAPISQAFPQQA 397
>UNIPROTKB|F1RUN0 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 EMBL:CU896684
Ensembl:ENSSSCT00000012171 OMA:PANNENR Uniprot:F1RUN0
Length = 236
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 144 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 203
Query: 295 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
SAQ AI MNG R +KPY
Sbjct: 204 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 236
>UNIPROTKB|B4DQL3 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AL589765 UniGene:Hs.26047 HGNC:HGNC:11967
EMBL:AK298852 IPI:IPI00909704 SMR:B4DQL3 STRING:B4DQL3
Ensembl:ENST00000392706 UCSC:uc010pdh.2 Uniprot:B4DQL3
Length = 260
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 67/170 (39%), Positives = 81/170 (47%)
Query: 167 MGPRNYAMPPSGFVGSGYPAVPGLQYPM---PYPGGMLGHRPLNNSPGSVSPAVANSNP- 222
+G Y+ P+ +G PA P YP PYP L PA+ P
Sbjct: 94 LGVNGYSPVPTQ--PTGQPA-PDALYPNGVHPYPAAYPAAYSLVAPAFPQPPALVAQQPP 150
Query: 223 -----XXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 277
Q EGP G N+FIYH+PQEF D E+ F FG V+SAKVFVD+
Sbjct: 151 PPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR 210
Query: 278 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
AT SKCFGFVS+++PASAQ AI MNG R N+PY
Sbjct: 211 ATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 260
>UNIPROTKB|K7EJD7 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589386 Uniprot:K7EJD7
Length = 185
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 49/71 (69%), Positives = 56/71 (78%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
Q EGP G NLFIYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFGFVS+++PA
Sbjct: 107 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPA 166
Query: 295 SAQNAIAMMNG 305
SAQ AI MNG
Sbjct: 167 SAQTAIQAMNG 177
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 174 (66.3 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 297
GPPGAN+F++H+P + D EL FQ FG V+SA++ D A G +K +GFVS+ +P SA
Sbjct: 146 GPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRD-ANGRNKGYGFVSFNNPESAL 204
Query: 298 NAIAMMNG 305
NAI M+G
Sbjct: 205 NAIKGMHG 212
Score = 114 (45.2 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
+PK+V+E E+ + YGTI + + + Q+ +G AF+ YE + +A A+EA++ K
Sbjct: 14 IPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEALDYKCIF 73
Query: 62 EGSSVPLVVKWA 73
S PL V++A
Sbjct: 74 PNSQRPLDVRFA 85
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 174 (66.3 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 297
GPPGAN+F++H+P + D EL FQ FG V+SA++ D A G +K +GFVS+ +P SA
Sbjct: 146 GPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRD-ANGRNKGYGFVSFNNPESAL 204
Query: 298 NAIAMMNG 305
NAI M+G
Sbjct: 205 NAIKGMHG 212
Score = 114 (45.2 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
+PK+V+E E+ + YGTI + + + Q+ +G AF+ YE + +A A+EA++ K
Sbjct: 14 IPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEALDYKCIF 73
Query: 62 EGSSVPLVVKWA 73
S PL V++A
Sbjct: 74 PNSQRPLDVRFA 85
>UNIPROTKB|F1M3I9 [details] [associations]
symbol:Brunol4 "Protein Brunol4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00358672
Ensembl:ENSRNOT00000019548 ArrayExpress:F1M3I9 Uniprot:F1M3I9
Length = 306
Score = 189 (71.6 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 7 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 66
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 67 MPGASSSLVVKFADTDKE 84
Score = 89 (36.4 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 58/229 (25%), Positives = 85/229 (37%)
Query: 109 PMGYAPPYNGYGYQASGSYGLMQYRLPPMQN--QPGFHGIIPPVNQGNAMRGASPDLS-- 164
PM A P+ YG A LMQ + M + Q G+ + + A+ +++
Sbjct: 102 PM--AIPFGAYGAYAQA---LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGL 156
Query: 165 --SNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 222
+ M P + P G PAVP + P P G+ G L P AN P
Sbjct: 157 AAAPMTPTSGGSTPPGITA---PAVPSI----PSPIGVNGFTGL--------PPQANGQP 201
Query: 223 XXXXXXXXXXX-XQIEGPPGANLFIYHIPQEFG--DQELGNAFQA-FGRVLSAKVFVDKA 278
+ P A+ + Q + Q G A+ A +G++ A
Sbjct: 202 AAEAVFANGIHPYPAQSPTAAD----PLQQAYAGVQQYAGPAYPAAYGQISQAFPQPPPM 257
Query: 279 TGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
+ GFVS+++PASAQ AI MNG R N+PY
Sbjct: 258 IPQQQREGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 306
>UNIPROTKB|Q0V9L3 [details] [associations]
symbol:celf4 "CUGBP Elav-like family member 4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
Uniprot:Q0V9L3
Length = 424
Score = 129 (50.5 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 19 GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78
G + +Q+ ++ GCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 116 GMNRPIQVKPADSESRGGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 175
Score = 126 (49.4 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A++ +
Sbjct: 54 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 113
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 114 LPGMNRPIQVKPADSE 129
Score = 117 (46.2 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 23/34 (67%), Positives = 24/34 (70%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV 268
Q EGP G NLFIYH+PQEFGD EL F FG V
Sbjct: 352 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 385
Score = 87 (35.7 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 285 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
FGFVS+++PASAQ AI MNG R N+PY
Sbjct: 382 FGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 424
Score = 44 (20.5 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 287 FVSYESPASAQNAIAMMNG 305
FV Y S A AQ AI ++G
Sbjct: 136 FVKYSSHAEAQAAINALHG 154
>UNIPROTKB|F1P311 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02033464 IPI:IPI01017320
Ensembl:ENSGALT00000038509 ArrayExpress:F1P311 Uniprot:F1P311
Length = 328
Score = 171 (65.3 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 19 MISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 78
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 79 MEGCSSPIVVKFADTQKD 96
Score = 112 (44.5 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQEL 258
Q EGP GANLFIYH+PQEFGDQ+L
Sbjct: 302 QKEGPEGANLFIYHLPQEFGDQDL 325
>UNIPROTKB|F1P022 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02039408 EMBL:AADN02039409
EMBL:AADN02039410 EMBL:AADN02039411 EMBL:AADN02039412
EMBL:AADN02039413 EMBL:AADN02039414 EMBL:AADN02039415
EMBL:AADN02039416 EMBL:AADN02039417 EMBL:AADN02039418
EMBL:AADN02039419 EMBL:AADN02039420 EMBL:AADN02039421
EMBL:AADN02039422 EMBL:AADN02039423 EMBL:AADN02039424
EMBL:AADN02039425 EMBL:AADN02039426 EMBL:AADN02039427
EMBL:AADN02039428 EMBL:AADN02039429 EMBL:AADN02039430
EMBL:AADN02039431 EMBL:AADN02039432 EMBL:AADN02039433
IPI:IPI00574286 Ensembl:ENSGALT00000040033 ArrayExpress:F1P022
Uniprot:F1P022
Length = 325
Score = 170 (64.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
M+ K +E ++ +FS +G I++ +ILRG S+GCAF+ + T+ A A++A++
Sbjct: 19 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 78
Query: 61 MEGSSVPLVVKWADTEKE 78
MEG S P+VVK+ADT+K+
Sbjct: 79 MEGCSSPIVVKFADTQKD 96
Score = 110 (43.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 19/24 (79%), Positives = 22/24 (91%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQEL 258
Q EGP GANLFIYH+PQEFGDQ++
Sbjct: 299 QKEGPEGANLFIYHLPQEFGDQDI 322
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 229 (85.7 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 98/350 (28%), Positives = 137/350 (39%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 147 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 206
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY- 119
M G+S LVVK+ADT+KE N + +GA
Sbjct: 207 MPGASSSLVVKFADTDKERTMRRMQQMAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALM 265
Query: 120 GYQASGSY--GLMQYRLPPMQNQPGFH--GI----IPPVNQGNAMRG----ASPDLSSNM 167
A G Y + + MQ + G+ + P + G+ G A P + S +
Sbjct: 266 ASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPI 325
Query: 168 GPRNYA-MPPSGFVGSGYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPX 223
G + +PP +G PA + PYP PL + V + P
Sbjct: 326 GVNGFTGLPPQA---NGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQY---AGPA 379
Query: 224 XXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELG-NAF-----QAFGRVLSAKVFVDK 277
PP IPQ+ + G N F Q FG ++F+
Sbjct: 380 AYPAAYGQISQAFPQPPPM------IPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP- 432
Query: 278 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
FGFVS+++PASAQ AI MNG R N+PY
Sbjct: 433 -------FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 475
Score = 126 (49.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A++ +
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 121 LPGMNRPIQVKPADSE 136
Score = 73 (30.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ + ++ + ++ F+AFG + + + G SK FV Y S A AQ AI +
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINAL 201
Query: 304 NG 305
+G
Sbjct: 202 HG 203
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 229 (85.7 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 98/350 (28%), Positives = 137/350 (39%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 158 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 217
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY- 119
M G+S LVVK+ADT+KE N + +GA
Sbjct: 218 MPGASSSLVVKFADTDKERTMRRMQQMAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALM 276
Query: 120 GYQASGSY--GLMQYRLPPMQNQPGFH--GI----IPPVNQGNAMRG----ASPDLSSNM 167
A G Y + + MQ + G+ + P + G+ G A P + S +
Sbjct: 277 ASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPI 336
Query: 168 GPRNYA-MPPSGFVGSGYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPX 223
G + +PP +G PA + PYP PL + V + P
Sbjct: 337 GVNGFTGLPPQA---NGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQY---AGPA 390
Query: 224 XXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELG-NAF-----QAFGRVLSAKVFVDK 277
PP IPQ+ + G N F Q FG ++F+
Sbjct: 391 AYPAAYGQISQAFPQPPPM------IPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP- 443
Query: 278 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
FGFVS+++PASAQ AI MNG R N+PY
Sbjct: 444 -------FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
Score = 126 (49.4 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A++ +
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 121 LPGMNRPIQVKPADSE 136
Score = 76 (31.8 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 239 PPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
PP + LF+ + ++ + ++ F+AFG + + + G SK FV Y S A A
Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEA 205
Query: 297 QNAIAMMNG 305
Q AI ++G
Sbjct: 206 QAAINALHG 214
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 229 (85.7 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 98/350 (28%), Positives = 137/350 (39%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 158 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 217
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY- 119
M G+S LVVK+ADT+KE N + +GA
Sbjct: 218 MPGASSSLVVKFADTDKERTMRRMQQMAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALM 276
Query: 120 GYQASGSY--GLMQYRLPPMQNQPGFH--GI----IPPVNQGNAMRG----ASPDLSSNM 167
A G Y + + MQ + G+ + P + G+ G A P + S +
Sbjct: 277 ASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPI 336
Query: 168 GPRNYA-MPPSGFVGSGYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPX 223
G + +PP +G PA + PYP PL + V + P
Sbjct: 337 GVNGFTGLPPQA---NGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQY---AGPA 390
Query: 224 XXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELG-NAF-----QAFGRVLSAKVFVDK 277
PP IPQ+ + G N F Q FG ++F+
Sbjct: 391 AYPAAYGQISQAFPQPPPM------IPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP- 443
Query: 278 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
FGFVS+++PASAQ AI MNG R N+PY
Sbjct: 444 -------FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
Score = 126 (49.4 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
+P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A++ +
Sbjct: 61 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 120
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 121 LPGMNRPIQVKPADSE 136
Score = 76 (31.8 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 239 PPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
PP + LF+ + ++ + ++ F+AFG + + + G SK FV Y S A A
Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEA 205
Query: 297 QNAIAMMNG 305
Q AI ++G
Sbjct: 206 QAAINALHG 214
>UNIPROTKB|K7EJK3 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589229 Uniprot:K7EJK3
Length = 162
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 35 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 94
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 95 MPGASSSLVVKFADTDKE 112
>UNIPROTKB|K7EQ97 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
Length = 154
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A++G
Sbjct: 24 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 83
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 84 MPGASSSLVVKFADTDKE 101
>ZFIN|ZDB-GENE-120215-101 [details] [associations]
symbol:si:dkey-205h23.2 "si:dkey-205h23.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
ZFIN:ZDB-GENE-120215-101 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 EMBL:CU929433
Ensembl:ENSDART00000151364 Uniprot:I3IS08
Length = 188
Score = 188 (71.2 bits), Expect = 9.3e-15, P = 9.3e-15
Identities = 36/51 (70%), Positives = 39/51 (76%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF 285
Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD+AT SKCF
Sbjct: 138 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSKCF 188
>UNIPROTKB|H9L0T2 [details] [associations]
symbol:H9L0T2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02043362 EMBL:AADN02043363
Ensembl:ENSGALT00000028399 Uniprot:H9L0T2
Length = 225
Score = 179 (68.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 37/78 (47%), Positives = 51/78 (65%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I + +LRG SKGCAF+K+ + +A AA+ A++G
Sbjct: 113 MLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQT 172
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 173 MPGASSSLVVKFADTDKE 190
>ZFIN|ZDB-GENE-070912-150 [details] [associations]
symbol:si:ch211-168n8.1 "si:ch211-168n8.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070912-150 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CT027714 IPI:IPI00833044 Ensembl:ENSDART00000122509
Uniprot:E7F1Z5
Length = 187
Score = 178 (67.7 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K +E +V LF YG I++ +LRG SKGCAF+K+ T +A +A+ ++G
Sbjct: 1 MLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHTEAQSAIGGLHGSQT 60
Query: 61 MEGSSVPLVVKWADTEKE 78
M G+S LVVK+ADT+KE
Sbjct: 61 MPGASSSLVVKFADTDKE 78
>UNIPROTKB|K7ES14 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 HGNC:HGNC:14058 Ensembl:ENST00000588350
Uniprot:K7ES14
Length = 295
Score = 187 (70.9 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 70/210 (33%), Positives = 93/210 (44%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I + +LRG +SKGCAF+K+ + +A AA+ A++G
Sbjct: 1 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 60
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 120
M G+S LVVK+ADT+KE L PSL LP PY+ Y
Sbjct: 61 MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT------PSL--TLPFS---PYSAYA 109
Query: 121 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFV 180
QA LMQ + + + + P V +S N P P SG
Sbjct: 110 -QA-----LMQQQTTVLSTSGSY--LSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH 161
Query: 181 GS---GYPAVPGLQYPM--------PYPGG 199
G AVPGL P+ P+PGG
Sbjct: 162 SPPLLGTTAVPGLVAPITNGFAGVVPFPGG 191
>UNIPROTKB|B4DFI3 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 UniGene:Hs.655747 HGNC:HGNC:14058 EMBL:AK294109
IPI:IPI00645373 SMR:B4DFI3 STRING:B4DFI3 Ensembl:ENST00000334293
Uniprot:B4DFI3
Length = 320
Score = 187 (70.9 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 70/210 (33%), Positives = 93/210 (44%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I + +LRG +SKGCAF+K+ + +A AA+ A++G
Sbjct: 26 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 85
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 120
M G+S LVVK+ADT+KE L PSL LP PY+ Y
Sbjct: 86 MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT------PSL--TLPFS---PYSAYA 134
Query: 121 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFV 180
QA LMQ + + + + P V +S N P P SG
Sbjct: 135 -QA-----LMQQQTTVLSTSGSY--LSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH 186
Query: 181 GS---GYPAVPGLQYPM--------PYPGG 199
G AVPGL P+ P+PGG
Sbjct: 187 SPPLLGTTAVPGLVAPITNGFAGVVPFPGG 216
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 119 (46.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 42/158 (26%), Positives = 60/158 (37%)
Query: 155 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYP--GGMLGHRPLNNSPGS 212
A+ G +P ++ ++ P P +P P GG + H P+N
Sbjct: 309 ALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAM-HTPVNKGLAR 367
Query: 213 VSPAVANSN----PXXXXXXXXXXXXQIEGPPGAN-LFIYHIPQEFGDQELGNAFQAFGR 267
SP + P GP GA +FIY++ E + L F FG
Sbjct: 368 FSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGA 427
Query: 268 VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
V S K+ D T K +GFVS + A AI +NG
Sbjct: 428 VQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNG 465
Score = 117 (46.2 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILR--GSQQTSKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ A+F+ +G I +IL+ G+ +KG F++++ +E+A A+ A+NG
Sbjct: 255 LPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTT 314
Query: 60 KMEGSSVPLVVKWADT 75
+ P+VVK+++T
Sbjct: 315 PSSCTD-PIVVKFSNT 329
Score = 94 (38.1 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGV-SKCFGFVSYESPASAQNA 299
GANL++ +P+ QEL F FG ++++++ + +K GF+ ++ A A
Sbjct: 247 GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRA 306
Query: 300 IAMMNG 305
I +NG
Sbjct: 307 IIALNG 312
Score = 63 (27.2 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT----------SKGCA----FLKYETKEQ 47
LP+ ++E E+ +LFS G I+ ++++R Q SKG + F+ Y +
Sbjct: 156 LPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQD 215
Query: 48 ALAALEAING 57
A A+ +NG
Sbjct: 216 AEQAVNVLNG 225
>RGD|1565016 [details] [associations]
symbol:Celf5 "CUGBP, Elav-like family member 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565016 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13207 GeneTree:ENSGT00560000076837 OrthoDB:EOG4RJG30 CTD:60680
IPI:IPI00914219 RefSeq:NP_001129075.1 UniGene:Rn.12319
ProteinModelPortal:D4A8V0 Ensembl:ENSRNOT00000061219 GeneID:314647
KEGG:rno:314647 UCSC:RGD:1565016 NextBio:668034 Uniprot:D4A8V0
Length = 395
Score = 182 (69.1 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 70/219 (31%), Positives = 96/219 (43%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
ML K SE +V LF +G I + +LRG +SKGCAF+K+ + +A AA+ A++G
Sbjct: 102 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 161
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 120
M G+S LVVK+ADT+KE L PSL LP PY+ Y
Sbjct: 162 MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT------PSL--TLPFS---PYSAYA 210
Query: 121 Y----------QASGSYGLMQYRLPPMQNQP----GFHGI-IPPVNQGNAMRGASPDLSS 165
SGSY PP Q +G+ P+ + + + P L +
Sbjct: 211 QALMQQQTTVLSTSGSYLSPGVAFPPCHIQQIGTVSLNGLPATPIAPASGLH-SPPLLGT 269
Query: 166 NMGPRNYAMPPSGFVGS-GYPAV-PGLQ--YP---MPYP 197
P PSGF G +P P L+ Y +PYP
Sbjct: 270 AAVPGLMTSIPSGFPGVLPFPGSHPALETVYANGLVPYP 308
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+++ E ++ LF +G I +L +L+ KGCAFL Y ++ A+ A A++ +
Sbjct: 14 IPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKAQTALHEQKT 73
Query: 61 MEGSSVPLVVKWADTE 76
+ G + P+ VK AD+E
Sbjct: 74 LPGMARPIQVKPADSE 89
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+F+ H+P EF D++L N F +G+VLS+KV +D G S +GFV + SP + AI
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSYGYGFVRFSSPQESAAAIEE 168
Query: 303 MNG 305
++G
Sbjct: 169 LDG 171
Score = 124 (48.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 299
P NLFI +P + D +L F+ FG+++ KV +D G SK GFV + S A A
Sbjct: 195 PSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDH-NGQSKFAGFVRFSSELDASKA 253
Query: 300 IAMMNG 305
I MNG
Sbjct: 254 IDAMNG 259
Score = 120 (47.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
LP +V++ ++ LF +G I + +++ SK F+++ ++ A A++A+NG
Sbjct: 204 LPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRIN 263
Query: 62 EGSSVPLVVKWADTEKE 78
+ S PLVVK+ADTE++
Sbjct: 264 KDSGYPLVVKYADTEQQ 280
Score = 116 (45.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NLF++H+P D L F FG++ S +V DK TG +K +GFV + A
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 303 MNG 305
MNG
Sbjct: 830 MNG 832
Score = 78 (32.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
LP ++ ++ LFS YG + +++ + S G F+++ + +++ AA+E ++G
Sbjct: 116 LPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEELDG 171
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 128 (50.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 124 (48.7 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 75 (31.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 303 MNG 305
+NG
Sbjct: 99 LNG 101
Score = 115 (45.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 19/65 (29%), Positives = 41/65 (63%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAI 300
ANL++ +P+ +++ F +GR++++++ VD+ T G+S+ GF+ ++ A+ AI
Sbjct: 124 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAI 183
Query: 301 AMMNG 305
+NG
Sbjct: 184 KGLNG 188
Score = 112 (44.5 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 30/96 (31%), Positives = 42/96 (43%)
Query: 212 SVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVL 269
+ S V +P + GP GA +F+Y++ E + L F FG V
Sbjct: 244 NASYGVKRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVT 303
Query: 270 SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+ KV D T K FGFV+ + A AIA +NG
Sbjct: 304 NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 111 (44.1 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 24/79 (30%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEAINGKH 59
LPK +S+ ++ LFS YG I +IL + + S+G F++++ + +A A++ +NG+
Sbjct: 131 LPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQK 190
Query: 60 KMEGSSVPLVVKWADTEKE 78
+ G++ P+ VK+A+ +
Sbjct: 191 PL-GAAEPITVKFANNPSQ 208
Score = 72 (30.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y A A+ +NG
Sbjct: 45 LPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNG 101
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 124 (48.7 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+N+++ +V +FS +G I + ++L Q T S+G AF++++ + +A A+ + NG H
Sbjct: 113 LPRNMTQKDVEDMFSRFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-H 170
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 171 KPPGSSEPITVKFA 184
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 302 MMNG 305
NG
Sbjct: 166 SFNG 169
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 303 MNG 305
+NG
Sbjct: 81 LNG 83
Score = 95 (38.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 304 NG 305
NG
Sbjct: 306 NG 307
Score = 85 (35.0 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 26/109 (23%), Positives = 50/109 (45%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAINGKHK 60
LP+N+++ E+ +LFS G ++ +++R S G F+ Y T + A A+ +NG +
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-R 85
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHP-SLFGAL 108
++ ++ V +A E N+ D + S FG +
Sbjct: 86 LQSKTIK--VSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRI 132
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 128 (50.1 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 25/63 (39%), Positives = 43/63 (68%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL++ ++ +EF +Q L F+ +GR+ S K+ +D+ G S+ FGFV+YE+P SA A+
Sbjct: 204 NLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEE-GRSRRFGFVAYENPQSALAAVIG 262
Query: 303 MNG 305
++G
Sbjct: 263 LHG 265
Score = 89 (36.4 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L +++ V FS++G I + + + S+G F+ ++++E A AA+E +NG
Sbjct: 120 LERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 175
>GENEDB_PFALCIPARUM|PFL1745c [details] [associations]
symbol:PFL1745c "clustered-asparagine-rich
protein" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AE014188 Gene3D:2.20.70.10
SUPFAM:SSF51045 RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562
IntAct:Q8I562 MINT:MINT-1548460 PRIDE:Q8I562
EnsemblProtists:PFL1745c:mRNA GeneID:811401 KEGG:pfa:PFL1745c
EuPathDB:PlasmoDB:PF3D7_1236100 HOGENOM:HOG000283459 Uniprot:Q8I562
Length = 445
Score = 172 (65.6 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 297
GP G+NLFI+HIP E+ D +L F FG ++S+K+ D +TG + FGFVSY++ SAQ
Sbjct: 356 GPSGSNLFIFHIPSEWTDLDLFQHFCCFGNIISSKIQRD-STGRNSGFGFVSYDNVISAQ 414
Query: 298 NAIAMMNG 305
+AI MNG
Sbjct: 415 HAIQFMNG 422
Score = 42 (19.8 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 18/82 (21%), Positives = 35/82 (42%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-------TSK---GCAFLKYETKEQALAA 51
+P ++++ + +L G IKD+ S++ +K A + + T E+AL
Sbjct: 23 IPPHITDVHLRSLLGNVGFIKDICYFNKSKKQMNNNNFANKKIYNTALVTFNTHEEALNV 82
Query: 52 LEAINGKHKMEGSSVPLVVKWA 73
L+ I G + K+A
Sbjct: 83 LKNIKNLIDTSGEERNIDAKFA 104
>UNIPROTKB|Q8I562 [details] [associations]
symbol:PFL1745c "Clustered-asparagine-rich protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR001202 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AE014188 Gene3D:2.20.70.10 SUPFAM:SSF51045
RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562 IntAct:Q8I562
MINT:MINT-1548460 PRIDE:Q8I562 EnsemblProtists:PFL1745c:mRNA
GeneID:811401 KEGG:pfa:PFL1745c EuPathDB:PlasmoDB:PF3D7_1236100
HOGENOM:HOG000283459 Uniprot:Q8I562
Length = 445
Score = 172 (65.6 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 297
GP G+NLFI+HIP E+ D +L F FG ++S+K+ D +TG + FGFVSY++ SAQ
Sbjct: 356 GPSGSNLFIFHIPSEWTDLDLFQHFCCFGNIISSKIQRD-STGRNSGFGFVSYDNVISAQ 414
Query: 298 NAIAMMNG 305
+AI MNG
Sbjct: 415 HAIQFMNG 422
Score = 42 (19.8 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 18/82 (21%), Positives = 35/82 (42%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-------TSK---GCAFLKYETKEQALAA 51
+P ++++ + +L G IKD+ S++ +K A + + T E+AL
Sbjct: 23 IPPHITDVHLRSLLGNVGFIKDICYFNKSKKQMNNNNFANKKIYNTALVTFNTHEEALNV 82
Query: 52 LEAINGKHKMEGSSVPLVVKWA 73
L+ I G + K+A
Sbjct: 83 LKNIKNLIDTSGEERNIDAKFA 104
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 161 (61.7 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 26/76 (34%), Positives = 51/76 (67%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L K + E+ +F+ YG ++D+ I++ + S+GC F+K+ ++E ALAA+ A++G + M
Sbjct: 220 LNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
Query: 62 EGSSVPLVVKWADTEK 77
G PL++++AD ++
Sbjct: 280 RGCEQPLIIRFADPKR 295
Score = 129 (50.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+ +E +V LF +G + ++ +++ + +GC F+KY T E+A A+ A++ ++
Sbjct: 129 VPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQYT 188
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+ P+ V++AD E+E
Sbjct: 189 LPGAMGPIQVRYADGERE 206
Score = 62 (26.9 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 39/162 (24%), Positives = 60/162 (37%)
Query: 63 GSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ 122
GS P+ K + N ++ + PS + MG PP G+
Sbjct: 357 GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPS---SSHMGMNPPPMAQGHH 413
Query: 123 ASGSYGLMQYRLPPMQNQPGFHGIIPPV---NQ-GNAMRGASPDLSSNMGPRNYAMPPSG 178
G ++PP+Q PG P NQ G ++G + + P++ M P
Sbjct: 414 LGGQ------QIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQIGQLQVPQS--MGPGS 465
Query: 179 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 220
F G + G Q P+ P L + + S V AV+NS
Sbjct: 466 F---GQNRLSG-QLPVSQP---LMQQNASVSAVQVPSAVSNS 500
Score = 55 (24.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES--PA-SAQNAI 300
LF+ + ++ +E+ F +G V + D C GFV + S PA +A +A+
Sbjct: 215 LFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGC-GFVKFSSREPALAAMSAL 273
Query: 301 A---MMNGC 306
+ +M GC
Sbjct: 274 SGNYVMRGC 282
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 161 (61.7 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 26/76 (34%), Positives = 51/76 (67%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L K + E+ +F+ YG ++D+ I++ + S+GC F+K+ ++E ALAA+ A++G + M
Sbjct: 220 LNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVM 279
Query: 62 EGSSVPLVVKWADTEK 77
G PL++++AD ++
Sbjct: 280 RGCEQPLIIRFADPKR 295
Score = 129 (50.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+P+ +E +V LF +G + ++ +++ + +GC F+KY T E+A A+ A++ ++
Sbjct: 129 VPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQYT 188
Query: 61 MEGSSVPLVVKWADTEKE 78
+ G+ P+ V++AD E+E
Sbjct: 189 LPGAMGPIQVRYADGERE 206
Score = 62 (26.9 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 39/162 (24%), Positives = 60/162 (37%)
Query: 63 GSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ 122
GS P+ K + N ++ + PS + MG PP G+
Sbjct: 357 GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPS---SSHMGMNPPPMAQGHH 413
Query: 123 ASGSYGLMQYRLPPMQNQPGFHGIIPPV---NQ-GNAMRGASPDLSSNMGPRNYAMPPSG 178
G ++PP+Q PG P NQ G ++G + + P++ M P
Sbjct: 414 LGGQ------QIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQIGQLQVPQS--MGPGS 465
Query: 179 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 220
F G + G Q P+ P L + + S V AV+NS
Sbjct: 466 F---GQNRLSG-QLPVSQP---LMQQNASVSAVQVPSAVSNS 500
Score = 55 (24.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES--PA-SAQNAI 300
LF+ + ++ +E+ F +G V + D C GFV + S PA +A +A+
Sbjct: 215 LFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGC-GFVKFSSREPALAAMSAL 273
Query: 301 A---MMNGC 306
+ +M GC
Sbjct: 274 SGNYVMRGC 282
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 126 (49.4 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D +G SK FGFVSYE A A+
Sbjct: 121 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 303 MNG 305
MNG
Sbjct: 180 MNG 182
Score = 125 (49.1 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 222 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 279
Query: 301 AMMNG 305
MNG
Sbjct: 280 TEMNG 284
Score = 100 (40.3 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK +M G
Sbjct: 129 EEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSG 187
Query: 64 SSV 66
S+
Sbjct: 188 KSI 190
Score = 82 (33.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 35 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAANKAIEKMNG 89
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 126 (49.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D +G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 125 (49.1 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 100 (40.3 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK +M G
Sbjct: 200 EEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSG 258
Query: 64 SSV 66
S+
Sbjct: 259 KSI 261
Score = 82 (33.9 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAANKAIEKMNG 160
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 118 (46.6 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 303 MNG 305
M G
Sbjct: 167 MGG 169
Score = 90 (36.7 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 14 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGR-KI 71
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 72 MGKEVK--VNWATT 83
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 120 (47.3 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ +AF FG++ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 59 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 118
Query: 303 MNG 305
M G
Sbjct: 119 MGG 121
Score = 55 (24.4 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 39 FLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75
F+++ A AAL A+NG+ K+ G V V WA T
Sbjct: 13 FVEFYEHRDAAAALAAMNGR-KILGKEVK--VNWATT 46
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 126 (49.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D +G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 125 (49.1 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 100 (40.3 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK +M G
Sbjct: 200 EEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSG 258
Query: 64 SSV 66
S+
Sbjct: 259 KSI 261
Score = 82 (33.9 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAANKAIEKMNG 160
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 123 (48.4 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 302 MMNG 305
NG
Sbjct: 166 SFNG 169
Score = 120 (47.3 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 303 MNG 305
+NG
Sbjct: 81 LNG 83
Score = 118 (46.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+ +++ +V +FS +G I + ++L Q T S+G AF++++ + +A A+ + NG H
Sbjct: 113 LPRTMTQKDVEDMFSPFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-H 170
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 171 KPPGSSEPITVKFA 184
Score = 96 (38.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 304 NG 305
NG
Sbjct: 306 NG 307
Score = 85 (35.0 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LFS G I+ +++R S G F+ Y T + A A+ +NG
Sbjct: 27 LPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 128 (50.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 124 (48.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 111 (44.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ- 189
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 190 KPPGATEPITVKFANNPSQ 208
Score = 105 (42.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 222 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 279
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 75 (31.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 128 (50.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 111 (44.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ- 189
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 190 KPPGATEPITVKFANNPSQ 208
Score = 105 (42.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 222 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 279
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 75 (31.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 128 (50.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 111 (44.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ- 189
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 190 KPPGATEPITVKFANNPSQ 208
Score = 105 (42.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 222 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 279
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 75 (31.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 128 (50.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 124 (48.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 111 (44.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ- 189
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 190 KPPGATEPITVKFANNPSQ 208
Score = 105 (42.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 34/120 (28%), Positives = 48/120 (40%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N + +P I G PG +F
Sbjct: 222 PNRRYPGPLAQQAQRFR-LDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIF 280
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 281 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340
Score = 75 (31.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G V SAK+ DK G S +GFV+Y + A+ AI+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 303 MNG 305
+NG
Sbjct: 81 LNG 83
Score = 123 (48.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 302 MMNG 305
NG
Sbjct: 166 SFNG 169
Score = 118 (46.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+ +++ +V +FS +G I + ++L Q T S+G AF++++ + +A A+ + NG H
Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-H 170
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 171 KPPGSSEPITVKFA 184
Score = 95 (38.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 304 NG 305
NG
Sbjct: 306 NG 307
Score = 84 (34.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LFS G ++ +++R S G F+ Y T + A A+ +NG
Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G V SAK+ DK G S +GFV+Y + A+ AI+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 303 MNG 305
+NG
Sbjct: 81 LNG 83
Score = 123 (48.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 302 MMNG 305
NG
Sbjct: 166 SFNG 169
Score = 118 (46.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+ +++ +V +FS +G I + ++L Q T S+G AF++++ + +A A+ + NG H
Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-H 170
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 171 KPPGSSEPITVKFA 184
Score = 95 (38.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 304 NG 305
NG
Sbjct: 306 NG 307
Score = 84 (34.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LFS G ++ +++R S G F+ Y T + A A+ +NG
Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 123 (48.4 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 302 MMNG 305
NG
Sbjct: 166 SFNG 169
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 303 MNG 305
+NG
Sbjct: 81 LNG 83
Score = 118 (46.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+ +++ +V +FS +G I + ++L Q T S+G AF++++ + +A A+ + NG H
Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-H 170
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 171 KPPGSSEPITVKFA 184
Score = 95 (38.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 304 NG 305
NG
Sbjct: 306 NG 307
Score = 83 (34.3 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LFS G ++ +++R S G F+ Y T + A A+ +NG
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 130 (50.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 21/64 (32%), Positives = 42/64 (65%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +E+ F +GR++++++ +D+ATGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 116 (45.9 bits), Expect = 0.00031, P = 0.00031
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 114 (45.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +S+ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMSQKEMEQLFSQYGRIITSRILL-DQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 60 KMEGSSVPLVVKWADTEKE 78
+ G++ P+ VK+A+ +
Sbjct: 191 PL-GAAEPITVKFANNPSQ 208
Score = 101 (40.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 33/105 (31%), Positives = 46/105 (43%)
Query: 206 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 260
LN + G SP +A +P + G GA +F+Y++ E + L
Sbjct: 243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302
Query: 261 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 73 (30.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y A A+ +NG
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 130 (50.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 21/64 (32%), Positives = 42/64 (65%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +E+ F +GR++++++ +D+ATGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 116 (45.9 bits), Expect = 0.00031, P = 0.00031
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 114 (45.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +S+ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMSQKEMEQLFSQYGRIITSRILL-DQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 60 KMEGSSVPLVVKWADTEKE 78
+ G++ P+ VK+A+ +
Sbjct: 191 PL-GAAEPITVKFANNPSQ 208
Score = 101 (40.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 33/105 (31%), Positives = 46/105 (43%)
Query: 206 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 260
LN + G SP +A +P + G GA +F+Y++ E + L
Sbjct: 243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302
Query: 261 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 73 (30.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y A A+ +NG
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 123 (48.4 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 114 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 173
Query: 302 MMNG 305
NG
Sbjct: 174 SFNG 177
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 29 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 88
Query: 303 MNG 305
+NG
Sbjct: 89 LNG 91
Score = 118 (46.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+ +++ +V +FS +G I + ++L Q T S+G AF++++ + +A A+ + NG H
Sbjct: 121 LPRTMTQKDVEDMFSRFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-H 178
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 179 KPPGSSEPITVKFA 192
Score = 95 (38.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 304 NG 305
NG
Sbjct: 314 NG 315
Score = 83 (34.3 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LFS G ++ +++R S G F+ Y T + A A+ +NG
Sbjct: 35 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 91
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 128 (50.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212
Query: 302 MMNG 305
+NG
Sbjct: 213 GLNG 216
Score = 124 (48.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 303 MNG 305
+NG
Sbjct: 128 LNG 130
Score = 111 (44.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 160 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ- 217
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 218 KPPGATEPITVKFANNPSQ 236
Score = 105 (42.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 250 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 307
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 308 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 367
Score = 75 (31.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 74 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 130
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 128 (50.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 302 MMNG 305
+NG
Sbjct: 214 GLNG 217
Score = 124 (48.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 303 MNG 305
+NG
Sbjct: 129 LNG 131
Score = 111 (44.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 161 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ- 218
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 219 KPPGATEPITVKFANNPSQ 237
Score = 105 (42.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 34/120 (28%), Positives = 48/120 (40%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N + +P I G PG +F
Sbjct: 251 PNRRYPGPLAQQAQRFR-LDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIF 309
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 310 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 369
Score = 75 (31.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 75 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 131
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 128 (50.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 302 MMNG 305
+NG
Sbjct: 214 GLNG 217
Score = 124 (48.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 303 MNG 305
+NG
Sbjct: 129 LNG 131
Score = 111 (44.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 161 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ- 218
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 219 KPPGATEPITVKFANNPSQ 237
Score = 105 (42.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 251 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 308
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 309 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 368
Score = 75 (31.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 75 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 131
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 128 (50.1 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 165 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 224
Query: 302 MMNG 305
+NG
Sbjct: 225 GLNG 228
Score = 111 (44.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 172 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ- 229
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 230 KPPGATEPITVKFANNPSQ 248
Score = 105 (42.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/120 (28%), Positives = 48/120 (40%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N + +P I G PG +F
Sbjct: 262 PNRRYPGPLAQQAQRFR-LDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIF 320
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 321 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 380
Score = 53 (23.7 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILR 28
LP+N+++ E+ +LF G I+ +++R
Sbjct: 56 LPQNMTQEELKSLFGSIGEIESCKLVR 82
Score = 47 (21.6 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 12 SALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
S+LF + + I+ G S G F+ Y + A A+ +NG
Sbjct: 97 SSLFEKWRPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNG 142
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 123 (48.4 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 133 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 192
Query: 302 MMNG 305
NG
Sbjct: 193 SFNG 196
Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 303 MNG 305
+NG
Sbjct: 108 LNG 110
Score = 118 (46.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+ +++ +V +FS +G I + ++L Q T S+G AF++++ + +A A+ + NG H
Sbjct: 140 LPRTMTQKDVEDMFSRFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-H 197
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 198 KPPGSSEPITVKFA 211
Score = 95 (38.5 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 304 NG 305
NG
Sbjct: 333 NG 334
Score = 83 (34.3 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LFS G ++ +++R S G F+ Y T + A A+ +NG
Sbjct: 54 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 110
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 123 (48.4 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 302 MMNG 305
NG
Sbjct: 166 NFNG 169
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 303 MNG 305
+NG
Sbjct: 81 LNG 83
Score = 116 (45.9 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+++++ +V +FS +G I + ++L Q T S+G AF++++ + +A A+ NG H
Sbjct: 113 LPRSMTQKDVEDMFSRFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAITNFNG-H 170
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 171 KPPGSSEPITVKFA 184
Score = 95 (38.5 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 304 NG 305
NG
Sbjct: 306 NG 307
Score = 83 (34.3 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LFS G ++ +++R S G F+ Y T + A A+ +NG
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 133 (51.9 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ ++ L + F AFG++LS KV D+ G SKCFGFV YE+ +A+ AI
Sbjct: 141 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIEN 199
Query: 303 MNG 305
+NG
Sbjct: 200 VNG 202
Score = 129 (50.5 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NLF+ ++ ++L F+ FG + SAKV VD+A G SK FGFV + +P A AI
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAI 393
Query: 301 AMMN 304
MN
Sbjct: 394 TEMN 397
Score = 91 (37.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-ATGVSKCFGFVSYESPASAQNAIA 301
N+++ +I + ++ F FG++ S ++++K G SK FGFV++E SA A+
Sbjct: 234 NIYVKNIDLNYSEESFEKLFSPFGKITS--IYLEKDQDGKSKGFGFVNFEDHESAVKAVE 291
Query: 302 MMN 304
+N
Sbjct: 292 ELN 294
Score = 89 (36.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 64
N SE LFS +G I + + + SKG F+ +E E A+ A+E +N K ++ G
Sbjct: 243 NYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDK-EINGQ 301
Query: 65 SV 66
+
Sbjct: 302 KI 303
Score = 74 (31.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 20/76 (26%), Positives = 39/76 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
L +V+EA + +FS G + +++ R + + S G A++ Y E A+E +N +
Sbjct: 59 LNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELN-YNP 117
Query: 61 MEGSSVPLVVKWADTE 76
+EG P + W+ +
Sbjct: 118 IEGR--PCRIMWSQRD 131
Score = 72 (30.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 15 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
FS +G I ++ SK F+ YET E A AA+E +NG
Sbjct: 160 FSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNG 202
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 118 (46.6 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 92 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 151
Query: 303 MNG 305
M G
Sbjct: 152 MGG 154
Score = 90 (36.7 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 10 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGR-KI 67
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 68 MGKEVK--VNWATT 79
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 129 (50.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +E+ F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 116 (45.9 bits), Expect = 0.00031, P = 0.00031
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 112 (44.5 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +S+ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMSQKEMEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 60 KMEGSSVPLVVKWADTEKE 78
+ G++ P+ VK+A+ +
Sbjct: 191 PL-GAAEPITVKFANNPSQ 208
Score = 101 (40.6 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 33/105 (31%), Positives = 46/105 (43%)
Query: 206 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 260
LN + G SP +A +P + G GA +F+Y++ E + L
Sbjct: 243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302
Query: 261 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 73 (30.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y A A+ +NG
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 129 (50.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +E+ F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 116 (45.9 bits), Expect = 0.00031, P = 0.00031
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 112 (44.5 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +S+ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMSQKEMEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 60 KMEGSSVPLVVKWADTEKE 78
+ G++ P+ VK+A+ +
Sbjct: 191 PL-GAAEPITVKFANNPSQ 208
Score = 101 (40.6 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 33/105 (31%), Positives = 46/105 (43%)
Query: 206 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 260
LN + G SP +A +P + G GA +F+Y++ E + L
Sbjct: 243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302
Query: 261 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 73 (30.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y A A+ +NG
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 118 (46.6 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 303 MNG 305
M G
Sbjct: 156 MGG 158
Score = 90 (36.7 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 14 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGR-KI 71
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 72 MGKEVK--VNWATT 83
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 132 (51.5 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ +I ++ D L + F +FG + SAKV VD+ G SK FGFV +E P A A+
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAV 400
Query: 301 AMMN 304
MN
Sbjct: 401 TDMN 404
Score = 112 (44.5 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ + + F FG +LS KV D G SK +GFV +E+ SAQ AI
Sbjct: 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEK 204
Query: 303 MNG 305
+NG
Sbjct: 205 VNG 207
Score = 90 (36.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+F+ + + ++L F FG + SA V D A G K FGFV++ +A A+
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 303 MN 304
+N
Sbjct: 298 LN 299
Score = 86 (35.3 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L + + V FS++G I ++ + SKG F+ +ET+ A A+E +NG
Sbjct: 152 LDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNG 207
Score = 78 (32.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + ++SA+FS +G I ++ +Q KG F+ + ++ A A+E +N +EG
Sbjct: 247 EHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSI-LEG 305
Query: 64 SSVPLVVKWADTEKE 78
+ L V A + E
Sbjct: 306 TDCKLSVCRAQKKSE 320
Score = 66 (28.3 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILR-GSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
L +VSEA + FS+ G + +++ R + + S G A++ ++ A AL+ +N +
Sbjct: 64 LHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFE-V 122
Query: 61 MEGSSVPLVVKWADTE 76
+ G P+ + W+ +
Sbjct: 123 IHGR--PMRIMWSQRD 136
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 125 (49.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 195 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 252
Query: 301 AMMNG 305
MNG
Sbjct: 253 TEMNG 257
Score = 124 (48.7 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D G SK FGFVSYE A A+
Sbjct: 94 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 152
Query: 303 MNG 305
MNG
Sbjct: 153 MNG 155
Score = 91 (37.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK
Sbjct: 102 EEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 156
Score = 81 (33.6 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 8 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAADKAIEKMNG 62
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 129 (50.5 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/64 (35%), Positives = 43/64 (67%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FGR+++++V VD+ATG+S+ F+ ++ + A+ AIA
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 165
Query: 302 MMNG 305
NG
Sbjct: 166 SFNG 169
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80
Query: 303 MNG 305
+NG
Sbjct: 81 LNG 83
Score = 112 (44.5 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+ +++ +V +F +G I + ++L Q T S+G AF++++ + +A A+ + NG H
Sbjct: 113 LPRTMTQKDVEDMFLPFGRIINSRVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-H 170
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 171 KPPGSSEPITVKFA 184
Score = 95 (38.5 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 304 NG 305
NG
Sbjct: 306 NG 307
Score = 79 (32.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 19/76 (25%), Positives = 41/76 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAINGKHK 60
LP+N+++ E+ +LFS G ++ +++R S G F+ Y + A A+ +NG +
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGL-R 85
Query: 61 MEGSSVPLVVKWADTE 76
++ ++ + V +E
Sbjct: 86 LQSKTIKVSVARPSSE 101
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 136 (52.9 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
P N+++ ++P+E G+ EL F FG + SA V D++ G S+CFGFV++E +A +
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAAS 284
Query: 299 AIAMMNG 305
A+ MNG
Sbjct: 285 AVEKMNG 291
Score = 128 (50.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
+ E GANL++ ++ D++L F +G V S+KV ++ G+S+ FGFV+Y +P
Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
Query: 295 SAQNAIAMMNG 305
A A++ MNG
Sbjct: 384 EALRALSEMNG 394
Score = 121 (47.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ ++ L F +FG +LS KV +D TG SK +GFV +E SAQ AI
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 303 MNG 305
+NG
Sbjct: 196 LNG 198
Score = 89 (36.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
LPK + E E+ F +G I ++R S+ F+ +E E A +A+E +NG
Sbjct: 236 LPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNG 291
Score = 80 (33.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L ++ + FS +GTI ++ SKG F+++E +E A AA++ +NG
Sbjct: 143 LDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Score = 71 (30.1 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 3 PKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56
PK V+EA + LF + +++ R + S G A++ + A A+EA+N
Sbjct: 58 PK-VTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 125 (49.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 124 (48.7 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 91 (37.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK
Sbjct: 200 EEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 81 (33.6 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 129 (50.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +E+ F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 116 (45.9 bits), Expect = 0.00031, P = 0.00031
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 112 (44.5 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +S+ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMSQKEMEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 60 KMEGSSVPLVVKWADTEKE 78
+ G++ P+ VK+A+ +
Sbjct: 191 PL-GAAEPITVKFANNPSQ 208
Score = 99 (39.9 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 238 GPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 295
G GA +F+Y++ E + L F FG V + KV D T K FGFV+ +
Sbjct: 279 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 338
Query: 296 AQNAIAMMNG 305
A AIA +NG
Sbjct: 339 AAMAIASLNG 348
Score = 73 (30.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y A A+ +NG
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 125 (49.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 125 (49.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D + G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 91 (37.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK
Sbjct: 200 EEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 81 (33.6 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 125 (49.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 125 (49.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D + G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 91 (37.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK
Sbjct: 200 EEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 81 (33.6 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 124 (48.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 111 (44.1 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ- 189
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 190 KPPGATEPITVKFANNPSQ 208
Score = 99 (39.9 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 236 IEGPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP 293
I G PG +F+Y++ + + L F FG V + KV D T K FGFV+ +
Sbjct: 255 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 314
Query: 294 ASAQNAIAMMNG 305
A AIA +NG
Sbjct: 315 DEAAMAIASLNG 326
Score = 75 (31.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 125 (49.1 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 124 (48.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 91 (37.1 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK
Sbjct: 200 EEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 81 (33.6 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 125 (49.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 125 (49.1 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D + G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 91 (37.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK
Sbjct: 200 EEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 81 (33.6 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 132 (51.5 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F FGR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213
Query: 302 MMNG 305
+NG
Sbjct: 214 GLNG 217
Score = 125 (49.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 303 MNG 305
+NG
Sbjct: 129 LNG 131
Score = 108 (43.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 26/79 (32%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS +G I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 161 LPKTMTQKELEQLFSQFGRIITSRILV-DQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ- 218
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 219 KPPGATEPITVKFANNPSQ 237
Score = 90 (36.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+F+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 304 NG 305
NG
Sbjct: 367 NG 368
Score = 76 (31.8 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 75 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNG 131
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 125 (49.1 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 333 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 390
Query: 301 AMMNG 305
MNG
Sbjct: 391 TEMNG 395
Score = 125 (49.1 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D + G SK FGFVSYE A A+
Sbjct: 232 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 290
Query: 303 MNG 305
MNG
Sbjct: 291 MNG 293
Score = 91 (37.1 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+ V + + LFS +G ++++R SKG F+ YE E A A+E +NGK
Sbjct: 240 EEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 294
Score = 81 (33.6 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 146 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQEAADKAIEKMNG 200
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 118 (46.6 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 303 MNG 305
M G
Sbjct: 156 MGG 158
Score = 90 (36.7 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 14 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGR-KI 71
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 72 MGKEVK--VNWATT 83
Score = 79 (32.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 26/110 (23%), Positives = 43/110 (39%)
Query: 198 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 255
G LG R + + + P S + PG N +Y + +
Sbjct: 158 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG-NCTVYCGGVTSGLTE 216
Query: 256 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
Q + F FG+++ +VF DK + F+ + S SA +AI +NG
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDKG------YSFIRFSSHESAAHAIVSVNG 260
Score = 63 (27.2 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 110 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP--GFHGIIPPVNQG-NAMRGASPDLSSN 166
+GY P Y +G + + QY +P P G +G P QG N + ++P
Sbjct: 289 IGYPPAYGQWGQWYGNAQQIGQY-VPNGWQVPAYGMYGQ-PWSQQGFNQTQSSAPW---- 342
Query: 167 MGPRNYAMPP-SGFVGSGYPAVP 188
MGP NY++PP G G P P
Sbjct: 343 MGP-NYSVPPPQGQNGGMLPNQP 364
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 118 (46.6 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 103 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 162
Query: 303 MNG 305
M G
Sbjct: 163 MGG 165
Score = 90 (36.7 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 10 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGR-KI 67
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 68 MGKEVK--VNWATT 79
Score = 79 (32.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 26/110 (23%), Positives = 43/110 (39%)
Query: 198 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 255
G LG R + + + P S + PG N +Y + +
Sbjct: 165 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG-NCTVYCGGVTSGLTE 223
Query: 256 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
Q + F FG+++ +VF DK + F+ + S SA +AI +NG
Sbjct: 224 QLMRQTFSPFGQIMEIRVFPDKG------YSFIRFSSHESAAHAIVSVNG 267
Score = 63 (27.2 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 110 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP--GFHGIIPPVNQG-NAMRGASPDLSSN 166
+GY P Y +G + + QY +P P G +G P QG N + ++P
Sbjct: 296 IGYPPAYGQWGQWYGNAQQIGQY-VPNGWQVPAYGMYGQ-PWSQQGFNQTQSSAPW---- 349
Query: 167 MGPRNYAMPP-SGFVGSGYPAVP 188
MGP NY++PP G G P P
Sbjct: 350 MGP-NYSVPPPQGQNGGMLPNQP 371
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 124 (48.7 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
E GANL++ +P+ +L F +FG+++++++ D +G+SK GF+ ++ A
Sbjct: 125 ESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEA 184
Query: 297 QNAIAMMNG 305
+ AI +NG
Sbjct: 185 ERAIQELNG 193
Score = 117 (46.2 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
LPKN+S+ ++ +F+ +G I +IL + SKG F++++ + +A A++ +NGK
Sbjct: 137 LPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTP 196
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALP 109
+G + P+ VK+A+ P A + L GALP
Sbjct: 197 -KGYAEPITVKFANNPSNSAKAQIAPPLTAYLT-PQAAAATRRLAGALP 243
Score = 90 (36.7 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+F+Y++ E + L F FG V S KV D T K FGFV+ + A AI +
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 304 NG 305
NG
Sbjct: 335 NG 336
Score = 48 (22.0 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILR 28
LP+ +++ E+ +LFS G ++ +++R
Sbjct: 33 LPQTMTQEEMRSLFSSIGELESCKLVR 59
Score = 42 (19.8 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 31 QQTSKGCAFLKYETKEQALAALEAING 57
Q S G F+ Y E A A+ +NG
Sbjct: 81 QGQSLGYGFVNYVRAEDAEKAVNTLNG 107
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 118 (46.6 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 303 MNG 305
M G
Sbjct: 167 MGG 169
Score = 90 (36.7 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 14 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGR-KI 71
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 72 MGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
P ++ + +Q + F FG+++ +VF DK + FV + S SA +
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264
Query: 299 AIAMMNG 305
AI +NG
Sbjct: 265 AIVSVNG 271
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 118 (46.6 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 303 MNG 305
M G
Sbjct: 167 MGG 169
Score = 90 (36.7 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 14 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGR-KI 71
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 72 MGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 26/110 (23%), Positives = 42/110 (38%)
Query: 198 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 255
G LG R + + + P S + P N +Y + +
Sbjct: 169 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPN-NCTVYCGGVTSGLTE 227
Query: 256 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
Q + F FG+++ +VF DK + FV + S SA +AI +NG
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKG------YSFVRFSSHESAAHAIVSVNG 271
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 110 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGII--PPVNQG-NAMRGASPDLSSN 166
+GY P Y +G + + QY +P P + G+ P QG N + ++P
Sbjct: 300 IGYPPTYGQWGQWYGNAQQIGQY-VPNGWQVPAY-GVYGQPWSQQGFNQTQSSAPW---- 353
Query: 167 MGPRNYAMPP-SGFVGSGYPAVP 188
MGP NY++PP G GS P+ P
Sbjct: 354 MGP-NYSVPPPQGQNGSMLPSQP 375
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 118 (46.6 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 303 MNG 305
M G
Sbjct: 167 MGG 169
Score = 90 (36.7 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 14 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGR-KI 71
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 72 MGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
P ++ + +Q + F FG+++ +VF DK + FV + S SA +
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264
Query: 299 AIAMMNG 305
AI +NG
Sbjct: 265 AIVSVNG 271
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 129 (50.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +E+ F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 116 (45.9 bits), Expect = 0.00031, P = 0.00031
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 112 (44.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +S+ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMSQKEMEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Query: 60 KMEGSSVPLVVKWADTEKE 78
+ G++ P+ VK+A+ +
Sbjct: 191 PL-GAAEPITVKFANNPSQ 208
Score = 96 (38.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+F+Y++ E + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 304 NG 305
NG
Sbjct: 346 NG 347
Score = 73 (30.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y A A+ +NG
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 129 (50.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212
Query: 302 MMNG 305
+NG
Sbjct: 213 GLNG 216
Score = 115 (45.5 bits), Expect = 0.00045, P = 0.00045
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIA 301
NL + ++PQ +EL + F + G + S K+ DK T G S +GFV+Y P A+ AI
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 302 MMNG 305
+NG
Sbjct: 127 TLNG 130
Score = 111 (44.1 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 160 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 217
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 218 KPPGATEPITVKFANNPSQ 236
Score = 90 (36.7 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+F+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 304 NG 305
NG
Sbjct: 368 NG 369
Score = 77 (32.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRG--SQQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E+ +LF G I+ +++R ++ S G F+ Y + A A+ +NG
Sbjct: 73 LPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNG 130
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 124 (48.7 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + + L F AFG +LS KV VD + G SK +GFV Y++ +AQ AI
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDK 192
Query: 303 MNG 305
+NG
Sbjct: 193 LNG 195
Score = 117 (46.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G+NL++ ++ + D +L F FG + S KV D + GVS+ GFV++ +P A AI
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAI 384
Query: 301 AMMNG 305
MNG
Sbjct: 385 TEMNG 389
Score = 117 (46.2 bits), Expect = 0.00059, P = 0.00059
Identities = 54/220 (24%), Positives = 91/220 (41%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V++ ++ F+ +GTI +++R S+G F+ + T E+A A+ +NGK +
Sbjct: 334 LDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIV 393
Query: 62 EGSSVPLVVKWADTEKEXXXXXXXXXXXXXN-NLPNADSQHPSLF--GALPMGYAPPYNG 118
+ PL V A +++ N+P A ++ G PMG Y G
Sbjct: 394 ---TKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFY-G 449
Query: 119 YGYQA---SGSYGLMQYRLPPMQ--NQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYA 173
G A +G Q +P M+ P + +P + QG + G R A
Sbjct: 450 QGPPAMIPQPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGA 509
Query: 174 MPPSGFVGSGYPAVPGLQYPMPYPGGMLGH--RPLNNSPG 211
+P P+ P +Q M G M + R +N PG
Sbjct: 510 LPQPQ-----QPS-PMMQQQMHPRGRMYRYPQRDVNTMPG 543
Score = 101 (40.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ ++ + D+EL F FG S + D G SK FGFV++E+ A A+
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDA 283
Query: 303 MNG 305
+NG
Sbjct: 284 LNG 286
Score = 96 (38.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
L +++S+ E++ +F +G I+R + SKG F+ +E + A A++A+NGK
Sbjct: 231 LSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGK 287
Score = 82 (33.9 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I ++ SKG F++Y+T E A A++ +NG
Sbjct: 140 LDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195
Score = 54 (24.1 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAIN 56
L V+++++ F+ G + +++ R + + S G ++ Y T + A AL +N
Sbjct: 52 LDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN 107
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 118 (46.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 303 MNG 305
M G
Sbjct: 167 MGG 169
Score = 88 (36.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 14 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAAALAAMNGR-KI 71
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 72 MGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
P ++ + +Q + F FG+++ +VF DK + FV + S SA +
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264
Query: 299 AIAMMNG 305
AI +NG
Sbjct: 265 AIVSVNG 271
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 124 (48.7 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ + F FG +++++V VD+ATG+S+ F+ ++ + A+ AIA
Sbjct: 117 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 176
Query: 302 MMNG 305
NG
Sbjct: 177 SFNG 180
Score = 111 (44.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LP+ +++ +V +F +G I + ++L Q T S+G AF++++ + +A A+ + NG H
Sbjct: 124 LPRTMTQKDVEDMFLPFGHIINSRVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-H 181
Query: 60 KMEGSSVPLVVKWA 73
K GSS P+ VK+A
Sbjct: 182 KPPGSSEPITVKFA 195
Score = 94 (38.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+F+Y++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 304 NG 305
NG
Sbjct: 317 NG 318
Score = 63 (27.2 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRG--------SQQTSKGCA----FLKYETKEQAL 49
LP+N+++ E+ +LFS G ++ +++R S SKG + F+ Y + A
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAE 86
Query: 50 AALEAING 57
A+ +NG
Sbjct: 87 RAINTLNG 94
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 129 (50.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 302 MMNG 305
+NG
Sbjct: 192 GLNG 195
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 303 MNG 305
+NG
Sbjct: 107 LNG 109
Score = 112 (44.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 139 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 196
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 197 KPSGATEPITVKFANNPSQ 215
Score = 94 (38.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G G +F
Sbjct: 229 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 286
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 287 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346
Score = 72 (30.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 129 (50.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 302 MMNG 305
+NG
Sbjct: 192 GLNG 195
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 303 MNG 305
+NG
Sbjct: 107 LNG 109
Score = 112 (44.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 139 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 196
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 197 KPSGATEPITVKFANNPSQ 215
Score = 94 (38.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G G +F
Sbjct: 229 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 286
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 287 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346
Score = 72 (30.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 118 (46.6 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 20/69 (28%), Positives = 44/69 (63%)
Query: 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
+G ANL+I +P+ + + + F +GR++++++ VD+A+G+S+ F+ ++ + A
Sbjct: 145 DGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEA 204
Query: 297 QNAIAMMNG 305
+ AI +NG
Sbjct: 205 EEAIKDLNG 213
Score = 115 (45.5 bits), Expect = 0.00041, P = 0.00041
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKC--------FGFVSYESPA 294
NL I ++PQ +EL + F + G V SAK+ DK G+S +GFV+Y +P+
Sbjct: 57 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPS 116
Query: 295 SAQNAIAMMNG 305
A+ AI +NG
Sbjct: 117 DAERAINTLNG 127
Score = 111 (44.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
LPK +++ V +F+ YG I + +IL S+G AF++++ + +A A++ +NG K
Sbjct: 157 LPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS-K 215
Query: 61 MEGSSVPLVVKWA 73
G+S P+ VK+A
Sbjct: 216 PSGASEPITVKFA 228
Score = 95 (38.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 33/110 (30%), Positives = 49/110 (44%)
Query: 198 GGMLGHRP--LNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGD 255
GG + H+P SP SV +V++ N G +F+Y++ Q+ +
Sbjct: 252 GGPVHHQPQRFRFSPMSVDHSVSSMNVASSSSS------------GWCIFVYNLGQDADE 299
Query: 256 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
L F FG V + KV D T K FGFV+ + A AI+ +NG
Sbjct: 300 GILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSLNG 349
Score = 70 (29.7 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILR------GSQQT---SKGCAFLKYETKEQALAAL 52
LP+N+S+ E+ +LFS G ++ +++R + T S G F+ Y A A+
Sbjct: 63 LPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAI 122
Query: 53 EAING 57
+NG
Sbjct: 123 NTLNG 127
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 129 (50.5 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 302 MMNG 305
+NG
Sbjct: 197 GLNG 200
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 303 MNG 305
+NG
Sbjct: 112 LNG 114
Score = 112 (44.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 144 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 201
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 202 KPSGATEPITVKFANNPSQ 220
Score = 94 (38.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G G +F
Sbjct: 234 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 291
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 292 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 351
Score = 72 (30.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 129 (50.5 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 302 MMNG 305
+NG
Sbjct: 197 GLNG 200
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 303 MNG 305
+NG
Sbjct: 112 LNG 114
Score = 112 (44.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 144 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 201
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 202 KPSGATEPITVKFANNPSQ 220
Score = 94 (38.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G G +F
Sbjct: 234 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 291
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 292 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 351
Score = 72 (30.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 118 (46.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 303 MNG 305
M G
Sbjct: 167 MGG 169
Score = 88 (36.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 14 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAAALAAMNGR-KI 71
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 72 MGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
P ++ + +Q + F FG+++ +VF DK + FV + S SA +
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264
Query: 299 AIAMMNG 305
AI +NG
Sbjct: 265 AIVSVNG 271
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 129 (50.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 112 (44.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 189
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 190 KPSGATEPITVKFANNPSQ 208
Score = 94 (38.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 202 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 259
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 248 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 307
Query: 260 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 308 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
Score = 72 (30.4 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 46 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 129 (50.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 302 MMNG 305
+NG
Sbjct: 185 GLNG 188
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 303 MNG 305
+NG
Sbjct: 100 LNG 102
Score = 112 (44.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 132 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 189
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 190 KPSGATEPITVKFANNPSQ 208
Score = 94 (38.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 202 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 259
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 248 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 307
Query: 260 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 308 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
Score = 72 (30.4 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 46 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 122 (48.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG S+ GF+ ++ A+ AI
Sbjct: 174 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIK 233
Query: 302 MMNG 305
+NG
Sbjct: 234 GLNG 237
Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 303 MNG 305
+NG
Sbjct: 149 LNG 151
Score = 112 (44.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 181 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ- 238
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 239 KPSGAAEPITVKFANNPSQ 257
Score = 95 (38.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G G +F
Sbjct: 271 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDSMTSLVGMNIPGHTGTGWCIF 328
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 329 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 388
Score = 72 (30.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 95 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 151
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 129 (50.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 302 MMNG 305
+NG
Sbjct: 192 GLNG 195
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 303 MNG 305
+NG
Sbjct: 107 LNG 109
Score = 112 (44.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 139 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 196
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 197 KPSGATEPITVKFANNPSQ 215
Score = 94 (38.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 202 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 259
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 255 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 314
Query: 260 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 315 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360
Score = 72 (30.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 129 (50.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 302 MMNG 305
+NG
Sbjct: 192 GLNG 195
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 303 MNG 305
+NG
Sbjct: 107 LNG 109
Score = 112 (44.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 139 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 196
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 197 KPSGATEPITVKFANNPSQ 215
Score = 94 (38.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 202 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 259
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 255 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 314
Query: 260 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 315 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360
Score = 72 (30.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 148 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 207
Query: 302 MMNG 305
+NG
Sbjct: 208 GLNG 211
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 303 MNG 305
+NG
Sbjct: 123 LNG 125
Score = 112 (44.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 155 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 212
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 213 KPSGATEPITVKFANNPSQ 231
Score = 94 (38.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N +++ V +P I G G +F
Sbjct: 245 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 302
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 362
Score = 72 (30.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 69 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 125
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 136 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 195
Query: 302 MMNG 305
+NG
Sbjct: 196 GLNG 199
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 303 MNG 305
+NG
Sbjct: 111 LNG 113
Score = 112 (44.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 143 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 200
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 201 KPSGATEPITVKFANNPSQ 219
Score = 94 (38.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 202 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 259
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 259 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 318
Query: 260 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 319 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 364
Score = 72 (30.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 57 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 113
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 129 (50.5 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 302 MMNG 305
+NG
Sbjct: 197 GLNG 200
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 303 MNG 305
+NG
Sbjct: 112 LNG 114
Score = 112 (44.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 144 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 201
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 202 KPSGATEPITVKFANNPSQ 220
Score = 94 (38.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 202 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 259
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 260 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 319
Query: 260 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 320 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365
Score = 72 (30.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 129 (50.5 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 302 MMNG 305
+NG
Sbjct: 197 GLNG 200
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 303 MNG 305
+NG
Sbjct: 112 LNG 114
Score = 112 (44.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 144 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 201
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 202 KPSGATEPITVKFANNPSQ 220
Score = 94 (38.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 202 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 259
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 260 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 319
Query: 260 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 320 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365
Score = 72 (30.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 124 (48.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + +E D+ L F FG+ LS KV D G SK FGFVSYE A A+
Sbjct: 105 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 163
Query: 303 MNG 305
MNG
Sbjct: 164 MNG 166
Score = 63 (27.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 34 SKGCAFLKYETKEQALAALEAING 57
SKG AF+ +ET+E A A+E +NG
Sbjct: 50 SKGYAFVHFETQEAADKAIEKMNG 73
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 122 (48.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 83
Query: 303 MNG 305
MNG
Sbjct: 84 MNG 86
Score = 121 (47.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 126 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 183
Query: 301 AMMNG 305
MNG
Sbjct: 184 TEMNG 188
Score = 76 (31.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 33 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 91
Query: 64 SSV 66
+
Sbjct: 92 KQI 94
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NLFI +P + L + F AFG + S +V VD TG+S+ FGFV ++ ASAQ AI
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 303 MNG 305
MNG
Sbjct: 160 MNG 162
Score = 116 (45.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI +P EF +L F A+G V+ +K+ +D T S+ G V Y SA NA+
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279
Query: 303 MNG 305
+NG
Sbjct: 280 LNG 282
Score = 108 (43.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 31/122 (25%), Positives = 50/122 (40%)
Query: 192 YPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGA--------N 243
YP + + NS G++ + P + PPG N
Sbjct: 324 YPQQQQQQQQQQQQMMNSSGAMMYPFYQNMPTMNSLPNSMIGSSSQPPPGGKNPGTDPTN 383
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
L++Y++P + D L F G + S K+ D+ T V + +GFV S A + +AI +
Sbjct: 384 LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSI 443
Query: 304 NG 305
NG
Sbjct: 444 NG 445
Score = 100 (40.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHK 60
LP + ++S LFS YG + + ++L + S+G ++Y + A+ A++++NG
Sbjct: 226 LPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKSLNG-FI 284
Query: 61 MEGSSVPLVVKWADTEKE 78
++ PL+V++AD E E
Sbjct: 285 LQDPEKPLIVRFADNEDE 302
Score = 72 (30.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHK 60
LP + + ++FS +G I +++ + S+G F+K++ A A+ ++NG K
Sbjct: 106 LPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGA-K 164
Query: 61 MEGSSVPLVVKWADTE 76
+E + L+V++A+++
Sbjct: 165 VENKT--LLVRFANSD 178
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 70/316 (22%), Positives = 126/316 (39%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
+PK+++ E+ ++F +G I +IL + SKG F++++ K++A A++ +NG
Sbjct: 135 IPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIP 194
Query: 61 MEGSSVPLVVKWADTE-----KEXXXXXXXXXXXXXNNLP-----NADSQHPSLFGALPM 110
G S + VK+A+ K +P A + + G PM
Sbjct: 195 -SGCSEQITVKFANNPASNNPKGLLSDLEAVQQAATTLVPLSTILGAPTLRATAGGIGPM 253
Query: 111 GYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPR 170
+AP + Y Y G+ + + + ++Q NA+ G +P ++
Sbjct: 254 HHAPITSKYRYSPMGAITAVSQPTATLPADYLTTSALLQMSQLNALAGLNPFATAT---- 309
Query: 171 NYAMPPSGFVGSGYPAVPGLQYPMPYP-GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXX 229
A+P F S A Q+ + P N G V+ A++
Sbjct: 310 --AVPD--FTAS-LIAHQQQQHAVAQQHAAQTASPPATN--GQVAGLAAHAQLSALSASV 362
Query: 230 XXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVS 289
+ G LF+Y++ + D L F FG +++ K+ D T K + FVS
Sbjct: 363 AATLPPSD-TAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVS 420
Query: 290 YESPASAQNAIAMMNG 305
+ A NA+ +NG
Sbjct: 421 MSNYTEAYNAMLSLNG 436
Score = 122 (48.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G+NL++ IP+ EL + F+ FG+++++++ D TG+SK GFV ++ A AI
Sbjct: 127 GSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAI 186
Query: 301 AMMNG 305
+NG
Sbjct: 187 KTLNG 191
Score = 84 (34.6 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAING 57
LP+ +++ EV +LF+ G I+ +++R S G F+ Y +E AL A+ + NG
Sbjct: 49 LPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNG 105
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 107 (42.7 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 2 LPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 60
LPK+ SE + LFS+ G +K ++IL + AF++Y+T E A AL +NG+
Sbjct: 86 LPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTLNGRLV 145
Query: 61 MEGSSVPLVVKWA 73
V + V WA
Sbjct: 146 ---DDVEIKVNWA 155
Score = 102 (41.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 299
P N+F+ + E D+ L NAF F + A V D T S+ +GFV++ + + A+ A
Sbjct: 171 PLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELA 230
Query: 300 IAMMNG 305
+ MNG
Sbjct: 231 LQTMNG 236
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 129 (50.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + + D+ L + F +G+ LS KV D A+G SK FGFVS++S +A+NA+
Sbjct: 191 NVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKD-ASGKSKRFGFVSFDSHKAAKNAVED 249
Query: 303 MNG 305
MNG
Sbjct: 250 MNG 252
Score = 101 (40.6 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
+I A L+I ++ D+ L F FG + KV + G SK FG + + SP
Sbjct: 286 RIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQE--AGQSKGFGLICFFSPE 343
Query: 295 SAQNAIAMMNG 305
+A A+A MNG
Sbjct: 344 AAAKAMAEMNG 354
Score = 73 (30.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
L K++ + FS +G I +++ ++ SKG F+ Y+ + A A+E +NGK
Sbjct: 105 LDKSIDNKTLYEHFSPFGKIMSSKVMT-DEEGSKGYGFVHYQDQRAADRAIEEMNGK 160
Score = 68 (29.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/62 (20%), Positives = 36/62 (58%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 64
++ + + ++FS YG +++++ + SK F+ +++ + A A+E +NG+ + G
Sbjct: 200 DMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRD-INGQ 258
Query: 65 SV 66
++
Sbjct: 259 TI 260
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 109 (43.4 bits), Expect = 0.00062, P = 0.00062
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+F+ +I + D++L F +G S KV D A+G SK FGFV YE+ +AQ A+
Sbjct: 36 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLD 94
Query: 303 MNG 305
++G
Sbjct: 95 LHG 97
Score = 106 (42.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
PPG ++I ++ + D++L F +FG + AKV ++ G K FG V + S A
Sbjct: 135 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATK 192
Query: 299 AIAMMNG 305
A+ MNG
Sbjct: 193 AVDEMNG 199
Score = 90 (36.7 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
++ + ++ LF YG + ++++R + SKG F++YET E A A+ ++GK
Sbjct: 45 DIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 98
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 129 (50.5 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 130 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189
Query: 302 MMNG 305
+NG
Sbjct: 190 GLNG 193
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 303 MNG 305
+NG
Sbjct: 105 LNG 107
Score = 112 (44.5 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 137 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ- 194
Query: 60 KMEGSSVPLVVKWADTEKE 78
K G++ P+ VK+A+ +
Sbjct: 195 KPSGATEPITVKFANNPSQ 213
Score = 90 (36.7 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 236 IEGPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP 293
I G G +F+Y++ + + L F FG V + KV D T K FGFV+ +
Sbjct: 260 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 319
Query: 294 ASAQNAIAMMNG 305
A AIA +NG
Sbjct: 320 DEAAMAIASLNG 331
Score = 72 (30.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+N+++ E +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 51 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 107
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 118 (46.6 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 303 MNG 305
M G
Sbjct: 156 MGG 158
Score = 85 (35.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A +AL A+NG+ K+
Sbjct: 14 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAASALAAMNGR-KI 71
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 72 MGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
P ++ + +Q + F FG+++ +VF DK + FV + S SA +
Sbjct: 200 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 253
Query: 299 AIAMMNG 305
AI +NG
Sbjct: 254 AIVSVNG 260
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 136 (52.9 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ ++P + +Q L + F FG++LS KV D + G S+CFGFV++E AQ A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVVH 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 62 (26.9 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 15 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
FS +G I ++ + S+G F+ +ET E A A+ +NG
Sbjct: 119 FSTFGNILSCKVAC-DEHGSRGFGFVHFETHEAAQQAINTMNG 160
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 125 (49.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 27/65 (41%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV +D G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 112 (44.5 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D +L + F +G +S +V D+ G S+ FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 83 (34.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 16/63 (25%), Positives = 35/63 (55%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + ++ +FS YG ++++ S+G F+ +E E A A++ +NGK +M G
Sbjct: 200 EDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGK-EMNG 258
Query: 64 SSV 66
+
Sbjct: 259 KLI 261
Score = 78 (32.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 120 (47.3 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ +AF FG++ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157
Query: 303 MNG 305
M G
Sbjct: 158 MGG 160
Score = 81 (33.6 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+E + LFS G K +++ C F+++ A AAL A+NG+ K+
Sbjct: 16 LSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-FVEFYEHRDAAAALAAMNGR-KI 73
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 74 LGKEVK--VNWATT 85
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 120 (47.3 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E +++ +AF FG++ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157
Query: 303 MNG 305
M G
Sbjct: 158 MGG 160
Score = 81 (33.6 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+E + LFS G K +++ C F+++ A AAL A+NG+ K+
Sbjct: 16 LSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-FVEFYEHRDAAAALAAMNGR-KI 73
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 74 LGKEVK--VNWATT 85
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 122 (48.0 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + + D+ L + F +G+ LS KV D ++G SK FGFVS++S +A+ A+
Sbjct: 191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 303 MNG 305
MNG
Sbjct: 250 MNG 252
Score = 115 (45.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
+I G G L+I ++ D++L N F +FG + KV ++ G SK FG + + SP
Sbjct: 286 RIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPE 343
Query: 295 SAQNAIAMMNG 305
A A+ MNG
Sbjct: 344 DATKAMTEMNG 354
Score = 79 (32.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
++ + + +FS YG ++++ S SKG F+ +++ E A A+E +NG+
Sbjct: 200 DMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGR 253
Score = 78 (32.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L K++ + FS +G I +++ Q SKG AF+ ++ + A A+E +NGK +
Sbjct: 105 LDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNGK-LL 162
Query: 62 EGSSV 66
+G V
Sbjct: 163 KGCKV 167
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 130 (50.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y +P A+ AI+
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 303 MNG 305
+NG
Sbjct: 95 LNG 97
Score = 120 (47.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 21/64 (32%), Positives = 43/64 (67%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL+I +P+ +++ F +GR+++++V VD+A+G+S+ F+ ++ A A++AI
Sbjct: 120 ANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIK 179
Query: 302 MMNG 305
+NG
Sbjct: 180 DLNG 183
Score = 99 (39.9 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHK 60
LPK +++ +V +F YG I + ++L S+G AF++++ + +A A++ +NG+ K
Sbjct: 127 LPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ-K 185
Query: 61 MEGSSVPLVVKWA 73
G++ + VK+A
Sbjct: 186 PPGAAEQMTVKFA 198
Score = 93 (37.8 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+FIY++ Q+ + L F FG V + KV D T K FGFV+ A AIA +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 304 NG 305
NG
Sbjct: 320 NG 321
Score = 79 (32.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYETKEQALAALEAING 57
LP+N+S+ E+ +LFS G ++ +++R S G F+ Y A A+ +NG
Sbjct: 41 LPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNG 97
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 125 (49.1 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 236 IEGPPGANLFIYH-IPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
+ GP L I +PQ+ D ++ + F+AFG++ S + D TG K +GF+ YE
Sbjct: 89 VAGPGLTGLSISPPLPQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 148
Query: 295 SAQNAIAMMN 304
S+Q+A++ MN
Sbjct: 149 SSQDAVSSMN 158
Score = 69 (29.3 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 5 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 56
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 125 (49.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 121 (47.7 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + + D+ L F +G+ LS KV D TG SK FGFVS+E A A+
Sbjct: 192 NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 81 (33.6 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
++ + + LFS YG ++++ SKG F+ +E E A A+E +NGK
Sbjct: 201 DMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGK 254
Score = 78 (32.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET++ A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQDAADRAIEKMNG 160
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 107 (42.7 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
PPG ++I ++ + D++L F +FG + AKV V+ G K FG + + S A
Sbjct: 299 PPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATK 356
Query: 299 AIAMMNG 305
A+ MNG
Sbjct: 357 AVDEMNG 363
Score = 103 (41.3 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+F+ + + D +L F +G S KV D ++G SK FGFV YE+ +AQ A+
Sbjct: 200 NVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLD 258
Query: 303 MNG 305
++G
Sbjct: 259 LHG 261
Score = 95 (38.5 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
++ + ++ LFS YG + ++++R S SKG F++YET E A A+ ++GK
Sbjct: 209 DMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Score = 58 (25.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + LFS +G+I +++ SKG A++ +++ A A+ +NG
Sbjct: 113 LDKSIDNRALFYLFSAFGSILSCKVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 94 (38.1 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSY 290
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+
Sbjct: 88 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 135
Score = 90 (36.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+NG+ K+
Sbjct: 6 LSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGR-KI 63
Query: 62 EGSSVPLVVKWADT 75
G V V WA T
Sbjct: 64 MGKEVK--VNWATT 75
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 125 (49.1 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ + D L F+++G + SAKV D+ G SK FGFV +E P A +A+
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAV 374
Query: 301 AMMN 304
MN
Sbjct: 375 TEMN 378
Score = 125 (49.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 241 GA-NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 299
GA N+FI ++ + ++ + + F FG +LS KV +D+ G SK +GFV +E+ +AQNA
Sbjct: 118 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNA 176
Query: 300 IAMMNG 305
I +NG
Sbjct: 177 IQKVNG 182
Score = 85 (35.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ + + + L F FG + S +V G SK FGFV++ +P A+ A+
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQA 271
Query: 303 MN 304
++
Sbjct: 272 LH 273
Score = 81 (33.6 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K + + FS++G I ++ SKG F+ +ET+E A A++ +NG
Sbjct: 127 LDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNG 182
Score = 65 (27.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 14 LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73
LF+ +G I +++ + SKG F+ + E+A A++A++ +EG+ + L V A
Sbjct: 232 LFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDS-TIEGTDLKLHVCRA 289
Query: 74 DTEKE 78
+ E
Sbjct: 290 QKKSE 294
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 123 (48.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + + L + F AFG +LS KV D SK FGFV YE+ SA AIA
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAK 157
Query: 303 MNG 305
+NG
Sbjct: 158 VNG 160
Score = 119 (46.9 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 26/65 (40%), Positives = 33/65 (50%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I +I + +L F FG + SA V D SK FGFV Y +P A A+
Sbjct: 283 GVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAV 342
Query: 301 AMMNG 305
MNG
Sbjct: 343 TEMNG 347
Score = 97 (39.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+F ++ ++ G +L Q +G + + + D G SK FGF ++ES +A+N +
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVEN 247
Query: 303 MNG 305
NG
Sbjct: 248 ENG 250
Score = 86 (35.3 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K + + FS +G I +++ +SKG F+ YET+E A A+ +NG
Sbjct: 105 LDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNG 160
Score = 76 (31.8 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
L ++V ++ L YG I ++ I+ + SKG F +E+ E A +E NGK
Sbjct: 195 LSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGK 251
Score = 58 (25.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAALEAIN 56
+LP+ VSE + +F+ G + ++++ R + + S A++ Y A AL+ +N
Sbjct: 17 LLPE-VSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLN 72
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 127 (49.8 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL+I ++ D++L F FG + SAKV +++ G SK FGFV + SP A A+
Sbjct: 294 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAV 351
Query: 301 AMMNG 305
MNG
Sbjct: 352 TEMNG 356
Score = 125 (49.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + + DQ L F +G+ LS KV D TG S+ FGFVSYE A A+
Sbjct: 193 NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEE 251
Query: 303 MNG 305
MNG
Sbjct: 252 MNG 254
Score = 78 (32.5 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG AF+ +ET++ A A+E +NG
Sbjct: 107 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYAFVHFETQDAADRAIEKMNG 161
Score = 77 (32.2 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 64
++ + + LF YG ++++ S+G F+ YE E A A+E +NG ++ G
Sbjct: 202 DMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGT-ELNGK 260
Query: 65 SV 66
+V
Sbjct: 261 TV 262
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 121 (47.7 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 116 (45.9 bits), Expect = 0.00071, P = 0.00071
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETHEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 112 (44.5 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D++L F +G LS +V D + G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDS-GKSKGFGFVSFERHEDAQRAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 84 (34.6 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + ++ +F YG ++++ SKG F+ +E E A A++ +NGK +M G
Sbjct: 200 EDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGK-EMNG 258
Query: 64 SSV 66
V
Sbjct: 259 KQV 261
Score = 76 (31.8 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETHEAAERAIEKMNG 160
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 126 (49.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIK 212
Query: 302 MMNG 305
+NG
Sbjct: 213 GLNG 216
Score = 125 (49.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 303 MNG 305
+NG
Sbjct: 128 LNG 130
Score = 105 (42.0 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKH 59
LPK +++ E+ LFS YG I +IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 160 LPKTMTQKELEQLFSQYGRIITSRILV-DQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ- 217
Query: 60 KMEGSSVPLVVKWADTEKE 78
K ++ P+ VK+A+ +
Sbjct: 218 KPPAATEPITVKFANNPSQ 236
Score = 96 (38.9 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 33/120 (27%), Positives = 46/120 (38%)
Query: 188 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 245
P +YP P R L+N + P I G G +F
Sbjct: 250 PNRRYPAPLAQQAQRFR-LDNLLNMAYGVKSRFPPMTIDGMTSLAGINIPGHAGTGWCIF 308
Query: 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 309 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 368
Score = 71 (30.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 57
LP+++++ E+ +LF G I+ +++R S G F+ Y + A A+ +NG
Sbjct: 74 LPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNG 130
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 116 (45.9 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D L F +G + SAKV + + SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 107 (42.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ ++ + +Q L + F FG+ S KV D + G S+ FGF+++E AQ A+
Sbjct: 192 NIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 89 (36.4 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
++ E + LFS +G + ++++R S S+G F+ +E E+A A++ +NGK
Sbjct: 201 DMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGK 254
Score = 73 (30.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 31/130 (23%), Positives = 62/130 (47%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHK 60
L +V+EA + +FS GTI +++ R + + S G A++ ++ A AL+ +N +
Sbjct: 18 LHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFE-M 76
Query: 61 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNA-DSQHP----SLFGALPMGYAPP 115
++G P+ + W+ ++ NL N+ D++ S FG++ +
Sbjct: 77 IKGQ--PIRIMWS--HRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSI-LSSKVV 131
Query: 116 YNGYGYQASG 125
YN +G + G
Sbjct: 132 YNEHGSRGFG 141
Score = 67 (28.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L ++ + FS +G+I +++ ++ S+G F+ +ET E A A+ +NG
Sbjct: 106 LENSIDNKALYDTFSTFGSILSSKVVY-NEHGSRGFGFVHFETHEAAQKAINTMNG 160
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 122 (48.0 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + + D+ L + F +G+ LS KV D ++G SK FGFVS++S +A+ A+
Sbjct: 249 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEE 307
Query: 303 MNG 305
MNG
Sbjct: 308 MNG 310
Score = 115 (45.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
+I G G L+I ++ D++L N F +FG + KV ++ G SK FG + + SP
Sbjct: 344 RIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPE 401
Query: 295 SAQNAIAMMNG 305
A A+ MNG
Sbjct: 402 DATKAMTEMNG 412
Score = 79 (32.9 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
++ + + +FS YG ++++ S SKG F+ +++ E A A+E +NG+
Sbjct: 258 DMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGR 311
Score = 78 (32.5 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L K++ + FS +G I +++ Q SKG AF+ ++ + A A+E +NGK +
Sbjct: 163 LDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNGK-LL 220
Query: 62 EGSSV 66
+G V
Sbjct: 221 KGCKV 225
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 136 (52.9 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 29/64 (45%), Positives = 37/64 (57%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NLFI ++ E D+ L F AFG + SAK+ D+ G SK FGFV Y +P A A+
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
Query: 301 AMMN 304
MN
Sbjct: 422 TEMN 425
Score = 115 (45.5 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ ++ L + F AFG++LS KV VD+ G +K +GFV ++S SA AI
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEH 227
Query: 303 MNG 305
+NG
Sbjct: 228 VNG 230
Score = 67 (28.6 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 15 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
FS +G I ++ +KG F+ +++ E A AA+E +NG
Sbjct: 188 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 62 (26.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
L +V+EA + LF+ G + +++ R + + S G A++ + E AL+ +N
Sbjct: 87 LDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELN 142
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 121 (47.7 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 162 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 219
Query: 301 AMMNG 305
MNG
Sbjct: 220 TEMNG 224
Score = 106 (42.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F G LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 64 NVYIKNFGEDMDDERLKDLF---GPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 119
Query: 303 MNG 305
MNG
Sbjct: 120 MNG 122
Score = 72 (30.4 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 4 KNVSE-AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 62
KN E + L ++G ++++ SKG F+ +E E A A++ +NGK ++
Sbjct: 68 KNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELN 126
Query: 63 GSSV 66
G +
Sbjct: 127 GKQI 130
Score = 60 (26.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 34 SKGCAFLKYETKEQALAALEAING 57
SKG F+ +ET+E A A+E +NG
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNG 32
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 113 (44.8 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+F+ + + D++L F +G S KV D ATG SK FGFV YE+ +AQ A+
Sbjct: 200 NVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRD-ATGKSKGFGFVRYETHEAAQKAVLE 258
Query: 303 MNG 305
++G
Sbjct: 259 LHG 261
Score = 105 (42.0 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
PPG ++I ++ + D++L F FG + AKV ++ G K FG V + S A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASK 356
Query: 299 AIAMMNG 305
A+ MNG
Sbjct: 357 AVNEMNG 363
Score = 95 (38.5 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
++ + ++ LFS YG + ++++R + SKG F++YET E A A+ ++GK
Sbjct: 209 DIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGK 262
Score = 57 (25.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + LFS +G I +++ SKG A++ +++ A A+ +NG
Sbjct: 113 LDKSIDNRALFYLFSAFGNILSCKVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 109 (43.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+F+ + + D++L F +G S KV D A+G SK FGFV YE+ +AQ A+
Sbjct: 200 NVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLD 258
Query: 303 MNG 305
++G
Sbjct: 259 LHG 261
Score = 108 (43.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
PPG ++I ++ + D++L F +FG + AKV V+ G K FG V + S A
Sbjct: 299 PPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVVCFSSFEDATK 356
Query: 299 AIAMMNG 305
A+ MNG
Sbjct: 357 AVDEMNG 363
Score = 90 (36.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
++ + ++ +FS YG + ++++R + SKG F++YET E A A+ ++GK
Sbjct: 209 DMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Score = 57 (25.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + LFS +G I +++ SKG A++ +++ A A+ +NG
Sbjct: 113 LDKSIDNRALFYLFSAFGNILSCKVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 134 (52.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G+ L++ ++ GD +L F A+G V SA+V +D+ATG S+ FGFV S AQ AI
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61
Query: 301 AMMNG 305
A +NG
Sbjct: 62 AGLNG 66
Score = 92 (37.4 bits), Expect = 0.00065, P = 0.00065
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 64
V +A++ F+ YGT+K Q++ + S+G F++ + ++A AA+ +NGK +M+G
Sbjct: 14 VGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGK-EMDGR 72
Query: 65 SV 66
++
Sbjct: 73 NL 74
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 121 (47.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 125 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 182
Query: 301 AMMNG 305
MNG
Sbjct: 183 TEMNG 187
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 82
Query: 303 MNG 305
MNG
Sbjct: 83 MNG 85
Score = 77 (32.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 32 EDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 90
Query: 64 SSV 66
+
Sbjct: 91 KQI 93
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 122 (48.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 147 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 205
Query: 303 MNG 305
MNG
Sbjct: 206 MNG 208
Score = 121 (47.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 248 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 305
Query: 301 AMMNG 305
MNG
Sbjct: 306 TEMNG 310
Score = 117 (46.2 bits), Expect = 0.00050, P = 0.00050
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 112
Query: 303 MNG 305
MNG
Sbjct: 113 MNG 115
Score = 78 (32.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 115
Score = 76 (31.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 155 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 213
Query: 64 SSV 66
+
Sbjct: 214 KQI 216
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 113 (44.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E ++ AF FG++ A+V D ATG SK +GF+S+ + A++AI
Sbjct: 98 HVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQ 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 85 (35.0 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 26/110 (23%), Positives = 44/110 (40%)
Query: 198 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 255
G LG R + + + P+ SN + +N +Y I D
Sbjct: 160 GQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSD 219
Query: 256 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
Q + F FG+++ +VF +K + FV ++S A +AI +NG
Sbjct: 220 QLMRQTFSPFGQIMEIRVFPEKG------YSFVRFDSHEGAAHAIVSVNG 263
Score = 81 (33.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + +FS G K +++ + C F+++ A AAL A+NG+ K+
Sbjct: 16 LSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYC-FVEFYENRHAAAALAAMNGR-KI 73
Query: 62 EGSSVPLVVKWADT 75
G + V WA T
Sbjct: 74 LGKDMK--VNWAST 85
Score = 75 (31.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 58
L +S +V A F+ +G I D ++++ + SKG F+ + K A +A++ +NG+
Sbjct: 104 LSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQ 161
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 122 (48.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 117 (46.2 bits), Expect = 0.00051, P = 0.00051
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 86 (35.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSY 290
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCF 340
Score = 78 (32.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 76 (31.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 119 (46.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 116 (45.9 bits), Expect = 0.00071, P = 0.00071
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIDK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 114 (45.2 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + + D+ L F +G LS KV D G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 82 (33.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 64
++++ + +F YG ++++ SKG F+ +E E A A++ +NGK M G
Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKD-MNGK 259
Query: 65 SV 66
S+
Sbjct: 260 SM 261
Score = 75 (31.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A++ +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIDKMNG 160
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 122 (48.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 65 (27.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K+++ + S +G I ++ + SKG F+ +ET E A A++ +NG
Sbjct: 106 LDKSINNKALYDTVSAFGNILSCNVVC-DENGSKGYGFVHFETHEAAERAIKKMNG 160
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 109 (43.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+F+ +I + D++L F +G S KV D A+G SK FGFV YE+ +AQ A+
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLD 258
Query: 303 MNG 305
++G
Sbjct: 259 LHG 261
Score = 106 (42.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 298
PPG ++I ++ + D++L F +FG + AKV ++ G K FG V + S A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATK 356
Query: 299 AIAMMNG 305
A+ MNG
Sbjct: 357 AVDEMNG 363
Score = 90 (36.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
++ + ++ LF YG + ++++R + SKG F++YET E A A+ ++GK
Sbjct: 209 DIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Score = 57 (25.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + LFS +G I +++ SKG A++ +++ A A+ +NG
Sbjct: 113 LDKSIDNRALFYLFSAFGNILSCKVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 119 (46.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D++L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 115 (45.5 bits), Expect = 0.00087, P = 0.00087
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ ++ L + F FG +LS KV D G S+ FGFV +E+ +AQNAI
Sbjct: 100 NVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDH-G-SRGFGFVHFETHEAAQNAIRT 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 109 (43.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ ++ + ++ L + F FG++LS KV D + G S+ FGFV++E AQ A+
Sbjct: 192 NIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDS-GHSRGFGFVNFEKHEDAQKAVTD 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 81 (33.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+V E + LFS +G I ++++R S+G F+ +E E A A+ +NGK
Sbjct: 201 DVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGK 254
Score = 61 (26.5 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 15 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
FS +G I +++ S+G F+ +ET E A A+ +NG
Sbjct: 119 FSTFGNILSCKVVC-DDHGSRGFGFVHFETHEAAQNAIRTMNG 160
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 136 (52.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ ++P + +Q L + F FG++LS KV D + G S+CFGFV++E AQ A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVVH 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 116 (45.9 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D +L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 82 (33.9 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
LP +V E + LFS +G + ++++R + S+ F+ +E E+A A+ +NGK
Sbjct: 198 LPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGK 254
Score = 62 (26.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 15 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
FS +G I ++ + S+G F+ +ET E A A+ +NG
Sbjct: 119 FSTFGNILSCKVAC-DEHGSRGFGFVHFETHEAAQQAINTMNG 160
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 121 (47.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 128 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 186
Query: 303 MNG 305
MNG
Sbjct: 187 MNG 189
Score = 121 (47.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 229 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 286
Query: 301 AMMNG 305
MNG
Sbjct: 287 TEMNG 291
Score = 117 (46.2 bits), Expect = 0.00048, P = 0.00048
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 93
Query: 303 MNG 305
MNG
Sbjct: 94 MNG 96
Score = 78 (32.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 42 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 96
Score = 77 (32.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 136 EDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 194
Query: 64 SSV 66
+
Sbjct: 195 KQI 197
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 122 (48.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 78 (32.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 76 (31.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 122 (48.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 78 (32.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 76 (31.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 122 (48.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 78 (32.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 76 (31.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 122 (48.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 78 (32.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 76 (31.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 122 (48.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 78 (32.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 76 (31.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 122 (48.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I ++ ++ D+ L + F FG LS KV D++ G SK FGFVS+E A+ A+
Sbjct: 192 NVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 119 (46.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 303 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAV 360
Query: 301 AMMNG 305
MNG
Sbjct: 361 TEMNG 365
Score = 80 (33.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L +++ + + LFS +G ++++ SKG F+ +E E A A++ +NGK +
Sbjct: 198 LGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKD-L 256
Query: 62 EGSSV 66
G +
Sbjct: 257 NGKQI 261
Score = 78 (32.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L +++ + FS +G I +++ + SKG F+ +ET+E+A A+E +NG
Sbjct: 106 LDRSIDSKTLYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEEAERAIEKMNG 160
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 122 (48.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 78 (32.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 76 (31.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 78 (32.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 77 (32.2 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 78 (32.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 77 (32.2 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 153 (58.9 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L K ++ EV+ +FS YG I+D+ + + +G AF+++ KE ALAA++A+NG +
Sbjct: 214 LNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTI 273
Query: 62 EGSSVPLVVKWADTEK 77
GS PL+V++AD +K
Sbjct: 274 RGSDQPLIVRFADPKK 289
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 123 (48.4 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + D+ L F FG+VLS KV D+ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 116 (45.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + S KV + G SK FGFV + SP A A+
Sbjct: 293 GINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
+ MNG
Sbjct: 351 SEMNG 355
Score = 77 (32.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 65
+ + ++ LF +G + ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 202 MDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKH 260
Query: 66 V 66
+
Sbjct: 261 I 261
Score = 75 (31.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K + + FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 106 LNKTIDNKALYDTFSAFGNILSCKVVC-DENGSKGHGFVHFETEEAAERAIEKMNG 160
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 143 (55.4 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 68/247 (27%), Positives = 97/247 (39%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L V++ ++ LF+ +GTI +++R TSKG F+ + +A L +NGK M
Sbjct: 335 LDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK--M 392
Query: 62 EGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN-LPNADSQHPSLFGALP-------MGYA 113
G PL V A ++E +P + P G P G
Sbjct: 393 VGGK-PLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQG 451
Query: 114 PP-----YNGYGYQASGSYGLMQ-YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNM 167
PP G+GYQ G+ + PM QPG G P G G P +
Sbjct: 452 PPPIIPHQPGFGYQPQLVPGMRPAFFGGPMM-QPGQQGPRP----GGRRSGDGPMRHQHQ 506
Query: 168 GPRNYAMP---PSGFVGSGYPAVPGLQYPM-PYPGGM------LGHRPLNN--SPGSVSP 215
P Y P P G G YP+ G P P PGGM + P + S G ++
Sbjct: 507 QPMPYMQPQMMPRGR-GYRYPS-GGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLAT 564
Query: 216 AVANSNP 222
++AN+ P
Sbjct: 565 SLANATP 571
Score = 117 (46.2 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ ++ + D EL F +G + SA V D G S+CFGFV++E+P A A+
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA 284
Query: 303 MNG 305
+NG
Sbjct: 285 LNG 287
Score = 101 (40.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D++L F FG + S KV D + G SK GFV++ + + A +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVL 385
Query: 301 AMMNG 305
MNG
Sbjct: 386 NEMNG 390
Score = 94 (38.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 4 KNVSEA----EVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
KN+SEA E+ F YG+I ++R S+ F+ +E E A A+EA+NGK
Sbjct: 230 KNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGK 288
Score = 82 (33.9 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
L K+V + FS GTI ++ S+G F++++T++ A A+E +NGK
Sbjct: 141 LDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK 197
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ ++ L + F FG +LS KV D+ G S+ FGFV +E+ +AQNAI+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEH-G-SRGFGFVHFETHEAAQNAIST 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 118 (46.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D++L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 116 (45.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ ++ + +Q L + F FG++LS KV D + G S+ FGFV++E AQ A+
Sbjct: 192 NIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDS-GHSRGFGFVNFEKHEEAQKAVVN 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 80 (33.2 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+V E + LFS +G + ++++R S+G F+ +E E+A A+ +NG+
Sbjct: 201 DVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGR 254
Score = 63 (27.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 15 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
FS +G I +++ + S+G F+ +ET E A A+ +NG
Sbjct: 119 FSTFGNILSCKVVC-DEHGSRGFGFVHFETHEAAQNAISTMNG 160
>UNIPROTKB|E7EPF2 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
Uniprot:E7EPF2
Length = 128
Score = 130 (50.8 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL+I +P DQ+L Q +G+++S K +DK T K +GFV ++SPA+AQ A++
Sbjct: 30 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 89
Query: 303 M 303
+
Sbjct: 90 L 90
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 127 (49.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L F AFG LS KV +D TG S+ FGFV+Y + AQ A++
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 115 (45.5 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 72 (30.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+++ + + +FS +G ++++ S+G F+ Y E+A A+ +NGK
Sbjct: 200 EDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGK 254
Score = 70 (29.7 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 4 KNVSEA-EVSAL---FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
KN+ E+ + AL FS +G I +++ + S+G F+ +ET+E A A++ +NG
Sbjct: 104 KNLDESIDNKALYDTFSAFGNILSCKVVC-DEHGSRGYGFVHFETQEAANRAIQTMNG 160
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 120 (47.3 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 210 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 269
Query: 304 N 304
N
Sbjct: 270 N 270
Score = 69 (29.3 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 122 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 173
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 122 (48.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 160 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 218
Query: 303 MNG 305
MNG
Sbjct: 219 MNG 221
Score = 121 (47.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 261 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 318
Query: 301 AMMNG 305
MNG
Sbjct: 319 TEMNG 323
Score = 76 (31.8 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 168 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 226
Query: 64 SSV 66
+
Sbjct: 227 KQI 229
Score = 60 (26.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 34 SKGCAFLKYETKEQALAALEAING 57
SKG F+ +ET+E A A+E +NG
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNG 128
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 121 (47.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 294
+I+ G NL++ ++ D++L F +G + SAKV D G S+ FGFV + SP
Sbjct: 287 RIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPE 344
Query: 295 SAQNAIAMMNG 305
A A+ MNG
Sbjct: 345 EATKAVTEMNG 355
Score = 115 (45.5 bits), Expect = 0.00090, P = 0.00090
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A AI
Sbjct: 100 NIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAANRAIET 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 104 (41.7 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ ++L N F FG+ LS V D+ G S+ FGFV++ + A+ A+
Sbjct: 192 NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 76 (31.8 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 4 KNVSEA-EVSAL---FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
KN+ E+ + AL FS +G I +++ + SKG F+ +ET+E A A+E +NG
Sbjct: 104 KNMDESIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAANRAIETMNG 160
Score = 51 (23.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+++ ++ +F+ +G + ++ + S+G F+ + A A+ +NGK
Sbjct: 200 EDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGK 254
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 120 (47.3 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 226 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 285
Query: 304 N 304
N
Sbjct: 286 N 286
Score = 69 (29.3 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 138 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 189
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 128 (50.1 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + + D L F FG+ LS KV +D TG SK FGFV++E AQ A+A
Sbjct: 192 NVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 117 (46.2 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 70 (29.7 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 64
++ + + +FS +G ++++ SKG F+ +E E+A A+ +NGK ++ G
Sbjct: 201 DMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGK-EINGR 259
Query: 65 SV 66
V
Sbjct: 260 MV 261
Score = 68 (29.0 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 15 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
FS +G I +++ + S+G F+ +ET+E A A++ +NG
Sbjct: 119 FSAFGNILSCKVVC-DENGSRGHGFVHFETQEAATRAIQTMNG 160
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 122 (48.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 120 (47.3 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL++ ++ D+ L AF FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 303 MNG 305
MNG
Sbjct: 353 MNG 355
Score = 76 (31.8 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
Score = 65 (27.9 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K+++ + S +G I ++ + SKG F+ +ET E A A++ +NG
Sbjct: 106 LDKSINNKALYDTVSAFGNILSCNVVC-DENGSKGYGFVHFETHEAAERAIKKMNG 160
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 120 (47.3 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 185 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 244
Query: 304 N 304
N
Sbjct: 245 N 245
Score = 69 (29.3 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 97 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 148
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 116 (45.9 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
++F+ + E ++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 97 HVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 156
Query: 303 MNG 305
M G
Sbjct: 157 MGG 159
Score = 74 (31.1 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++V+EA + LF G K +++ + C F+++ A A+L A+NG+ K+
Sbjct: 15 LSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYC-FVEFFEHRHAAASLAAMNGR-KI 72
Query: 62 EGSSVPLVVKWA 73
G V V WA
Sbjct: 73 MGKEVK--VNWA 82
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 118 (46.6 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D++L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 109 (43.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ ++ + +Q L + F FG++LS KV D + G S+ FGFV+++ AQ A+
Sbjct: 192 NIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDS-GHSRGFGFVNFQKHEEAQKAVMD 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 78 (32.5 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+V E + LFS +G + ++++R S+G F+ ++ E+A A+ +NGK
Sbjct: 201 DVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGK 254
Score = 61 (26.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 15 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
FS +G I +++ S+G F+ +ET E A A+ +NG
Sbjct: 119 FSTFGNILSCKVVC-DDHGSRGFGFVHFETHEAAQQAITTMNG 160
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 122 (48.0 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 99 (39.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
NL++ ++ D+ L AF FG + SAKV ++ G SK FGFV + SP A
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
Score = 76 (31.8 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + LF +G ++++ SKG F+ +E E A A++ +NGK ++ G
Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNG 258
Query: 64 SSV 66
+
Sbjct: 259 KQI 261
Score = 65 (27.9 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K+++ + S +G I ++ + SKG F+ +ET E A A++ +NG
Sbjct: 106 LDKSINNKALYDTVSAFGNILSCNVVC-DENGSKGYGFVHFETHEAAERAIKKMNG 160
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 120 (47.3 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 116 (45.9 bits), Expect = 0.00071, P = 0.00071
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIDK 157
Query: 303 MNG 305
MNG
Sbjct: 158 MNG 160
Score = 108 (43.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L F +G LS KV D G S+ FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDD 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 75 (31.5 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
L K++ + FS +G I +++ + SKG F+ +ET+E A A++ +NG
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVC-DENGSKGYGFVHFETQEAAERAIDKMNG 160
Score = 71 (30.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 14/63 (22%), Positives = 32/63 (50%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63
+++ + + F YG ++++ S+G F+ +E E A A++ +NGK + G
Sbjct: 200 EDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKD-LNG 258
Query: 64 SSV 66
++
Sbjct: 259 KAI 261
>ZFIN|ZDB-GENE-070122-4 [details] [associations]
symbol:rbm45 "RNA binding motif protein 45"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070122-4 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:129831 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 OrthoDB:EOG43R3MJ EMBL:BX004991
IPI:IPI00804253 RefSeq:NP_001120874.1 UniGene:Dr.80122
Ensembl:ENSDART00000093415 GeneID:568524 KEGG:dre:568524
NextBio:20889217 Uniprot:B0S522
Length = 467
Score = 104 (41.7 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAALEAINGKHKME 62
K+++E + F+ +G I+D+ +++ Q + SKG AF+K+ QA A+E ++G+ E
Sbjct: 25 KSITEDTIRESFASFGEIQDIWVVKDKQTKESKGVAFIKFAKSSQACTAMEEMHGRCLAE 84
Query: 63 GSSVPLVV 70
G+ P+ V
Sbjct: 85 GTK-PIKV 91
Score = 89 (36.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 236 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 295
+E +F+ IP+ F + +L F+ +G + A + +K TG SK G+V + P+
Sbjct: 105 VEDEELTRIFVM-IPKTFTEDDLKETFKVYGDIEYAIIIRNKTTGDSKGLGYVRFHKPSQ 163
Query: 296 AQNAI 300
A A+
Sbjct: 164 AAKAV 168
Score = 51 (23.0 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
LF+ P + L + F FG ++ +V++ V G++ Y SA +AI M
Sbjct: 385 LFVIFNPSPLPVEVLEDVFCRFGSLI--EVYLVPGRNV----GYIKYADRRSAHDAIDTM 438
Query: 304 NG 305
+G
Sbjct: 439 HG 440
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 120 (47.3 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 120 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 179
Query: 304 N 304
N
Sbjct: 180 N 180
Score = 69 (29.3 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 32 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 83
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 105 (42.0 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
+ ++I I + ++ + F FGRV+S + + TG K FGFV +E SA +AIA
Sbjct: 769 SRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIA 828
Query: 302 MMNG 305
MNG
Sbjct: 829 TMNG 832
Score = 97 (39.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 64
+++E + A FS++G IK L + + + SKG AF++Y+ +E A AL+++ + M G
Sbjct: 598 SLTEDVIRATFSVFGNIKSLALGKDASGKSKGYAFIEYDNQESAAKALQSMTN-YVMCGR 656
Query: 65 SVPLVVKWADT 75
++ + + T
Sbjct: 657 AIKVARPFTGT 667
Score = 37 (18.1 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 113 APPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 152
A P+ G G Q + + P I PPV Q
Sbjct: 661 ARPFTGTGSHQQQQQQQQQQQQQQILLSPNHQQIQPPVQQ 700
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 126 (49.4 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 241 GA-NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 299
GA N+FI ++ + + L + F +FG ++S KV VD ++G SK +GFV Y + SAQ A
Sbjct: 122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKA 180
Query: 300 IAMMNG 305
I +NG
Sbjct: 181 IEKLNG 186
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 54/237 (22%), Positives = 93/237 (39%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++S+ ++ +FS +GT+ +++R TSKG F+ + T E+A A+ ++GK +
Sbjct: 325 LDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGK-MI 383
Query: 62 EGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHP------------SLFGALP 109
E + + + ++ P+ + P +G P
Sbjct: 384 ESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAP 443
Query: 110 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFH-GIIPPVNQ--GNAMRGASPDLSSN 166
PP GYGYQ G+ P P F ++ P Q G R S
Sbjct: 444 PAMIPPQPGYGYQQQLVPGMR----PGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQ 499
Query: 167 MGPR-NYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 222
P M P G + YP G +P P M + PL + G+++ ++N+ P
Sbjct: 500 QNPMMQQQMHPRGRMFR-YPQGRGGSGDVP-PYDMGNNMPL--TIGALASNLSNATP 552
Score = 112 (44.5 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+++ ++ + D +L NAF +G++ SA V D G SK FGFV++E+ A A+
Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVES 274
Query: 303 MNG 305
+NG
Sbjct: 275 LNG 277
Score = 106 (42.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301
+NL++ ++ D++L F FG V S+KV D G SK GFV++ +P A A++
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS 376
Query: 302 MMNG 305
++G
Sbjct: 377 QLSG 380
Score = 88 (36.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 61
L ++ ++ ++ F YG I +++ + SKG F+ +E + A A+E++NG HK
Sbjct: 222 LAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG-HKF 280
Query: 62 E 62
+
Sbjct: 281 D 281
Score = 79 (32.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 4 KNVSEA-EVSAL---FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
KN+ E+ + AL FS +G I ++ S SKG F++Y +E A A+E +NG
Sbjct: 129 KNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
Score = 51 (23.0 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 5 NVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
NV+++++ F GT+ +++ R + S G ++ + + A A++ +N
Sbjct: 46 NVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN 98
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 111 (44.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L N F AFG +LS KV D+ G K +GFV ++ SA+ AI +
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEK-G-PKGYGFVHFQKQESAERAIDV 148
Query: 303 MNG 305
MNG
Sbjct: 149 MNG 151
Score = 63 (27.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
L V+EA + FS G I ++I R + S G A++ Y+ A ALE +N
Sbjct: 9 LHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFD-V 67
Query: 61 MEGSSVPLVVKWADTE 76
++G P+ + W+ +
Sbjct: 68 IKGR--PVRIMWSQRD 81
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 124 (48.7 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES 292
+F+ ++P G QEL F+ FGRV+SA V DK TG SK +GFVS+ S
Sbjct: 17 IFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNS 65
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 123 (48.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N++I + ++ D+ L F AFG LS KV +D + G S+ FGFV+Y + AQ A++
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSE 250
Query: 303 MNG 305
MNG
Sbjct: 251 MNG 253
Score = 113 (44.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NL++ ++ D L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 301 AMMNG 305
MNG
Sbjct: 351 TEMNG 355
Score = 73 (30.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58
+++ + + +FS +G ++++ S+G F+ Y E+A A+ +NGK
Sbjct: 200 EDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGK 254
Score = 68 (29.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 4 KNVSEA-EVSAL---FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57
KN+ E+ + AL FS +G I +++ + S+G F+ +ET E A A++ +NG
Sbjct: 104 KNLDESIDNKALYDTFSAFGNILSCKVVC-DEHGSRGYGFVHFETHEAANRAIQTMNG 160
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 120 (47.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 191 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 250
Query: 304 N 304
N
Sbjct: 251 N 251
Score = 69 (29.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 103 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 154
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 120 (47.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 199 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 258
Query: 304 N 304
N
Sbjct: 259 N 259
Score = 69 (29.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 111 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 162
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 120 (47.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 199 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 258
Query: 304 N 304
N
Sbjct: 259 N 259
Score = 69 (29.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 111 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 162
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 120 (47.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 212 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 271
Query: 304 N 304
N
Sbjct: 272 N 272
Score = 69 (29.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 124 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 175
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 140 (54.3 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 191 QYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIP 250
QY YP + + +P ++P ++N Q+ NL+I +P
Sbjct: 13 QYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLP 69
Query: 251 QEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM--NG 305
DQ+L Q +G+++S K +DK T K +GFV ++SPA+AQ A+A + NG
Sbjct: 70 PGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANG 126
Score = 111 (44.1 bits), Expect = 0.00060, P = 0.00060
Identities = 32/98 (32%), Positives = 45/98 (45%)
Query: 208 NSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR 267
+SP + AVA+ Q E P NL+I ++P +QEL N + FG
Sbjct: 110 DSPAAAQKAVASLK---ANGVQAQMAKQQEQDP-TNLYISNLPISMDEQELENMLKPFGH 165
Query: 268 VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305
V+S ++ D A GVS+ GF ES + I NG
Sbjct: 166 VISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNG 202
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 115 (45.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L + F FG +LS+K+ D+ G SK FGFV +E +A+ AI
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDA 185
Query: 303 MNG 305
+NG
Sbjct: 186 LNG 188
Score = 107 (42.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300
G NLF+ ++ D++L F +G + SAKV + G SK FGFV + +P A AI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAI 379
Query: 301 AMMN 304
N
Sbjct: 380 TEKN 383
Score = 98 (39.6 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
NL++ +I E D++ F FG ++SA + D A G K FGFV+YE A A+
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 303 MN 304
+N
Sbjct: 279 LN 280
Score = 76 (31.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 26/95 (27%), Positives = 39/95 (41%)
Query: 15 FSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV---P-LVV 70
FS++G I +I SKG F+ +E + A A++A+NG + G + P L
Sbjct: 146 FSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGM-LLNGQEIYVAPHLSR 204
Query: 71 KWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLF 105
K D++ E N D Q LF
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELF 239
Score = 75 (31.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
L +VSEA + +FS G++ +++ R + +TS G A++ + E A+E +N
Sbjct: 45 LEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLN 100
Score = 72 (30.4 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 7 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56
++ + LF+ +G I + + + KG F+ YE E A+ A+EA+N
Sbjct: 231 TDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 123 (48.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 296
+ P NLF+ + + + L AF FG V AKV D+ +G SK FGFV Y + +
Sbjct: 51 QAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110
Query: 297 QNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 327
IA M+G R +Q++ Y
Sbjct: 111 AKGIAGMDGKFLDGWVIFAEYARPREQSQSY 141
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 120 (47.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 228 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 287
Query: 304 N 304
N
Sbjct: 288 N 288
Score = 69 (29.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 140 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 191
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 120 (47.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 229 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 288
Query: 304 N 304
N
Sbjct: 289 N 289
Score = 69 (29.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 141 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 192
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 120 (47.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 304 N 304
N
Sbjct: 293 N 293
Score = 69 (29.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 145 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 196
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 120 (47.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303
+++ + Q+ D ++ + F+AFG++ S + D TG K +GF+ YE S+Q+A++ M
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292
Query: 304 N 304
N
Sbjct: 293 N 293
Score = 69 (29.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 56
+ E + F+ +G IK + + S KG AF++YE E A ALE +N
Sbjct: 145 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 196
>UNIPROTKB|Q3MHF0 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD GeneTree:ENSGT00680000100059
OrthoDB:EOG43R3MJ EMBL:DAAA02004143 EMBL:BC105262 IPI:IPI00711970
RefSeq:NP_001124225.1 UniGene:Bt.48322 STRING:Q3MHF0
Ensembl:ENSBTAT00000008111 GeneID:535331 KEGG:bta:535331
InParanoid:Q3MHF0 NextBio:20876704 Uniprot:Q3MHF0
Length = 474
Score = 95 (38.5 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAALEAINGKH 59
++ K SE+ + FS +G I+D+ ++R + SKG AF+K+ QA A+E ++G+
Sbjct: 31 VISKYTSESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQC 90
Query: 60 KMEGSSVPLVV 70
+ P+ V
Sbjct: 91 LTPSDTKPIKV 101
Score = 94 (38.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 236 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 295
+E +F+ IP+ + +++L F+ FG + + +K TG SK G+V Y P+
Sbjct: 115 VEDEELTRIFVM-IPKSYTEEDLREKFKVFGDIEYCSIIKNKVTGESKGLGYVRYLKPSQ 173
Query: 296 AQNAI 300
A AI
Sbjct: 174 AAQAI 178
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 109 (43.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302
N+FI ++ + ++ L N F AFG +LS KV D+ G K +GFV ++ SA+ AI
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEK-G-PKGYGFVHFQKQESAERAIDA 148
Query: 303 MNG 305
MNG
Sbjct: 149 MNG 151
Score = 63 (27.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 60
L V+EA + FS G I ++I R + S G A++ Y+ A ALE +N
Sbjct: 9 LHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFD-V 67
Query: 61 MEGSSVPLVVKWADTE 76
++G P+ + W+ +
Sbjct: 68 IKGR--PVRIMWSQRD 81
WARNING: HSPs involving 242 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.134 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 327 290 0.00089 115 3 11 23 0.44 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 492
No. of states in DFA: 604 (64 KB)
Total size of DFA: 197 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.94u 0.13s 25.07t Elapsed: 00:00:02
Total cpu time: 24.98u 0.13s 25.11t Elapsed: 00:00:02
Start: Sat May 11 16:19:37 2013 End: Sat May 11 16:19:39 2013
WARNINGS ISSUED: 2