Query 020372
Match_columns 327
No_of_seqs 136 out of 1926
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 7.7E-34 1.7E-38 254.3 20.6 160 2-323 115-277 (346)
2 KOG0144 RNA-binding protein CU 100.0 2.8E-33 6.2E-38 243.5 21.2 326 1-327 131-510 (510)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-31 2.6E-36 245.0 28.0 254 2-323 97-351 (352)
4 KOG0146 RNA-binding protein ET 100.0 2.3E-32 5E-37 224.2 18.0 314 1-327 26-371 (371)
5 KOG0148 Apoptosis-promoting RN 100.0 6.9E-32 1.5E-36 221.8 14.9 170 2-323 70-240 (321)
6 TIGR01645 half-pint poly-U bin 100.0 4.2E-31 9E-36 248.5 20.8 170 2-322 115-285 (612)
7 KOG0145 RNA-binding protein EL 100.0 4.9E-31 1.1E-35 215.6 17.9 224 2-322 135-359 (360)
8 KOG0144 RNA-binding protein CU 100.0 1.5E-31 3.3E-36 232.7 13.1 165 1-324 41-209 (510)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7E-30 1.5E-34 233.3 20.5 159 2-322 11-172 (352)
10 KOG0145 RNA-binding protein EL 100.0 3.9E-30 8.4E-35 210.4 13.1 160 2-323 49-211 (360)
11 TIGR01628 PABP-1234 polyadenyl 100.0 3.6E-29 7.7E-34 241.7 20.7 178 2-323 186-366 (562)
12 TIGR01622 SF-CC1 splicing fact 100.0 2.6E-28 5.7E-33 230.4 21.8 168 2-320 97-265 (457)
13 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-28 2.8E-33 237.9 18.5 159 2-321 8-167 (562)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.4E-26 3E-31 218.7 28.2 79 238-321 272-351 (481)
15 KOG0117 Heterogeneous nuclear 100.0 3.9E-27 8.5E-32 206.2 17.8 224 2-324 91-334 (506)
16 TIGR01648 hnRNP-R-Q heterogene 100.0 9.4E-27 2E-31 218.9 20.4 231 2-322 66-308 (578)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.4E-25 5.1E-30 210.4 20.9 189 2-321 283-480 (481)
18 KOG0131 Splicing factor 3b, su 99.9 2E-26 4.4E-31 179.3 9.7 160 2-322 17-178 (203)
19 KOG0127 Nucleolar protein fibr 99.9 8.2E-25 1.8E-29 195.9 19.7 239 2-322 125-379 (678)
20 KOG0127 Nucleolar protein fibr 99.9 2.2E-25 4.8E-30 199.6 14.0 184 2-322 13-197 (678)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3E-24 6.5E-29 205.5 20.9 184 2-319 303-500 (509)
22 TIGR01622 SF-CC1 splicing fact 99.9 5.2E-24 1.1E-28 201.2 22.2 72 2-76 194-266 (457)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.8E-24 1E-28 204.1 21.8 82 240-321 294-375 (509)
24 KOG0123 Polyadenylate-binding 99.9 3.7E-24 8E-29 192.9 16.6 149 3-323 7-155 (369)
25 KOG0109 RNA-binding protein LA 99.9 3.4E-24 7.5E-29 178.3 10.9 146 2-326 10-155 (346)
26 TIGR01645 half-pint poly-U bin 99.9 8.5E-21 1.8E-25 179.1 28.1 72 2-76 212-284 (612)
27 KOG0124 Polypyrimidine tract-b 99.9 8.1E-22 1.8E-26 168.9 12.4 167 2-319 121-288 (544)
28 KOG0147 Transcriptional coacti 99.9 7.2E-22 1.6E-26 177.9 11.3 170 2-320 187-357 (549)
29 KOG0123 Polyadenylate-binding 99.9 1.8E-21 3.9E-26 175.5 13.7 163 2-321 84-246 (369)
30 KOG0110 RNA-binding protein (R 99.9 1.2E-21 2.6E-26 181.0 11.7 167 2-321 523-693 (725)
31 KOG4205 RNA-binding protein mu 99.8 9.4E-21 2E-25 165.1 8.9 165 1-323 13-178 (311)
32 PLN03134 glycine-rich RNA-bind 99.8 2.8E-19 6.1E-24 140.9 14.1 86 238-323 31-116 (144)
33 KOG0147 Transcriptional coacti 99.8 3.7E-19 8E-24 160.5 12.5 73 2-77 286-359 (549)
34 KOG1456 Heterogeneous nuclear 99.8 5.8E-17 1.3E-21 139.6 21.4 224 4-320 132-362 (494)
35 KOG4212 RNA-binding protein hn 99.8 1.2E-16 2.7E-21 140.2 23.4 76 238-318 533-608 (608)
36 KOG4206 Spliceosomal protein s 99.8 2.4E-17 5.1E-22 133.9 17.5 199 2-319 17-220 (221)
37 TIGR01659 sex-lethal sex-letha 99.8 4.4E-17 9.5E-22 146.4 18.6 86 236-321 102-187 (346)
38 KOG1190 Polypyrimidine tract-b 99.8 3.2E-17 6.9E-22 142.8 15.6 210 3-321 159-373 (492)
39 KOG0148 Apoptosis-promoting RN 99.7 8.4E-18 1.8E-22 139.1 9.8 82 241-322 62-143 (321)
40 KOG4211 Splicing factor hnRNP- 99.7 3.6E-17 7.8E-22 146.0 14.5 160 2-317 18-178 (510)
41 KOG0121 Nuclear cap-binding pr 99.7 8.5E-18 1.8E-22 123.7 7.2 90 238-327 33-122 (153)
42 KOG0124 Polypyrimidine tract-b 99.7 2.6E-16 5.6E-21 135.3 17.2 72 2-76 218-290 (544)
43 KOG4212 RNA-binding protein hn 99.7 1E-15 2.3E-20 134.4 20.5 82 237-319 211-292 (608)
44 KOG0122 Translation initiation 99.7 3.8E-17 8.2E-22 133.5 9.6 83 240-322 188-270 (270)
45 KOG1548 Transcription elongati 99.7 5.1E-16 1.1E-20 132.8 16.4 181 2-321 142-352 (382)
46 KOG1457 RNA binding protein (c 99.7 4.8E-16 1E-20 125.3 14.6 78 2-79 42-121 (284)
47 PF00076 RRM_1: RNA recognitio 99.7 1.8E-16 4E-21 109.6 10.1 70 244-314 1-70 (70)
48 KOG0105 Alternative splicing f 99.7 2.6E-15 5.6E-20 117.7 17.1 171 2-317 14-186 (241)
49 PF14259 RRM_6: RNA recognitio 99.7 1E-15 2.2E-20 106.0 10.0 70 244-314 1-70 (70)
50 PLN03134 glycine-rich RNA-bind 99.7 5.1E-16 1.1E-20 122.4 9.3 72 2-76 42-114 (144)
51 KOG0149 Predicted RNA-binding 99.7 3.1E-16 6.6E-21 127.8 7.9 80 240-320 11-90 (247)
52 KOG1190 Polypyrimidine tract-b 99.7 7.5E-15 1.6E-19 128.2 17.0 184 3-321 307-491 (492)
53 KOG0110 RNA-binding protein (R 99.7 1.1E-15 2.3E-20 142.0 12.4 77 242-319 516-596 (725)
54 KOG0107 Alternative splicing f 99.6 1.2E-15 2.7E-20 118.6 8.4 78 240-322 9-86 (195)
55 KOG0125 Ataxin 2-binding prote 99.6 1E-14 2.2E-19 124.1 12.8 83 237-321 92-174 (376)
56 KOG0122 Translation initiation 99.6 2.3E-15 5E-20 123.1 7.9 72 2-76 197-269 (270)
57 PLN03120 nucleic acid binding 99.6 6.9E-15 1.5E-19 124.0 10.8 76 241-320 4-79 (260)
58 KOG1365 RNA-binding protein Fu 99.6 5.6E-15 1.2E-19 127.9 10.3 75 241-316 280-357 (508)
59 KOG0113 U1 small nuclear ribon 99.6 7.6E-15 1.6E-19 123.3 10.1 81 240-320 100-180 (335)
60 KOG4207 Predicted splicing fac 99.6 3.8E-15 8.2E-20 118.8 7.6 79 241-319 13-91 (256)
61 TIGR01648 hnRNP-R-Q heterogene 99.6 7.4E-15 1.6E-19 138.9 10.9 79 240-319 57-136 (578)
62 KOG0126 Predicted RNA-binding 99.6 3.3E-16 7.2E-21 122.3 1.0 80 240-319 34-113 (219)
63 KOG0106 Alternative splicing f 99.6 5.8E-15 1.3E-19 121.3 7.8 160 1-317 8-167 (216)
64 PLN03213 repressor of silencin 99.6 1.5E-14 3.2E-19 129.2 10.2 79 238-320 7-87 (759)
65 KOG0130 RNA-binding protein RB 99.5 1.4E-14 3.1E-19 107.7 7.4 85 238-322 69-153 (170)
66 PF00076 RRM_1: RNA recognitio 99.5 1.9E-14 4.2E-19 99.3 7.3 61 2-63 6-66 (70)
67 KOG0117 Heterogeneous nuclear 99.5 2.5E-14 5.5E-19 126.3 9.6 83 239-321 81-164 (506)
68 smart00362 RRM_2 RNA recogniti 99.5 5.3E-14 1.2E-18 97.1 9.4 72 243-316 1-72 (72)
69 smart00360 RRM RNA recognition 99.5 8.9E-14 1.9E-18 95.6 8.7 71 246-316 1-71 (71)
70 KOG0120 Splicing factor U2AF, 99.5 8.8E-14 1.9E-18 127.5 10.9 179 2-318 297-489 (500)
71 KOG0111 Cyclophilin-type pepti 99.5 1.5E-14 3.2E-19 116.4 4.6 85 238-322 7-91 (298)
72 KOG0108 mRNA cleavage and poly 99.5 4.8E-14 1E-18 128.6 8.3 81 242-322 19-99 (435)
73 PLN03121 nucleic acid binding 99.5 1.6E-13 3.5E-18 113.9 10.5 75 240-318 4-78 (243)
74 KOG0131 Splicing factor 3b, su 99.5 4.4E-14 9.4E-19 110.7 6.7 80 240-319 8-87 (203)
75 KOG4211 Splicing factor hnRNP- 99.5 3.1E-12 6.6E-17 114.8 19.1 73 241-316 281-353 (510)
76 KOG0114 Predicted RNA-binding 99.5 3.6E-13 7.9E-18 95.6 9.9 78 240-320 17-94 (124)
77 cd00590 RRM RRM (RNA recogniti 99.5 4.6E-13 1E-17 92.9 10.3 74 243-317 1-74 (74)
78 PF14259 RRM_6: RNA recognitio 99.5 3.5E-13 7.6E-18 93.1 7.9 62 2-64 6-67 (70)
79 smart00361 RRM_1 RNA recogniti 99.4 5.1E-13 1.1E-17 92.1 8.3 61 255-315 2-69 (70)
80 KOG4207 Predicted splicing fac 99.4 8.8E-14 1.9E-18 111.1 4.7 71 2-75 21-92 (256)
81 KOG1456 Heterogeneous nuclear 99.4 9.5E-12 2.1E-16 107.8 17.5 82 238-321 403-491 (494)
82 KOG0149 Predicted RNA-binding 99.4 1.3E-13 2.8E-18 112.5 5.6 70 2-75 20-90 (247)
83 COG0724 RNA-binding proteins ( 99.4 7E-13 1.5E-17 116.6 10.5 79 241-319 115-193 (306)
84 PF13893 RRM_5: RNA recognitio 99.4 1.1E-12 2.3E-17 86.4 8.1 56 258-318 1-56 (56)
85 KOG0125 Ataxin 2-binding prote 99.4 2.8E-13 6.2E-18 115.3 6.2 71 2-76 104-174 (376)
86 COG0724 RNA-binding proteins ( 99.4 1.7E-12 3.7E-17 114.1 11.0 71 2-75 123-194 (306)
87 PF13893 RRM_5: RNA recognitio 99.4 1.2E-12 2.7E-17 86.1 7.4 56 11-73 1-56 (56)
88 KOG0105 Alternative splicing f 99.4 6.9E-13 1.5E-17 104.2 6.8 79 240-321 5-83 (241)
89 smart00361 RRM_1 RNA recogniti 99.4 1.6E-12 3.4E-17 89.7 7.5 61 7-70 1-69 (70)
90 PLN03120 nucleic acid binding 99.4 1.8E-12 3.9E-17 109.5 8.9 69 2-76 12-80 (260)
91 KOG0126 Predicted RNA-binding 99.4 4.2E-14 9E-19 110.7 -1.3 72 2-76 43-115 (219)
92 smart00360 RRM RNA recognition 99.4 3.1E-12 6.8E-17 87.8 8.0 66 2-70 4-70 (71)
93 KOG0113 U1 small nuclear ribon 99.4 2.2E-12 4.7E-17 108.7 7.8 70 2-74 109-179 (335)
94 KOG4307 RNA binding protein RB 99.4 8.9E-10 1.9E-14 102.7 25.4 79 239-317 864-943 (944)
95 KOG0415 Predicted peptidyl pro 99.3 2.9E-12 6.3E-17 110.2 7.6 85 237-321 235-319 (479)
96 KOG0114 Predicted RNA-binding 99.3 1.7E-11 3.6E-16 87.3 9.4 77 2-83 26-102 (124)
97 PLN03121 nucleic acid binding 99.3 8E-12 1.7E-16 103.9 8.6 69 2-76 13-81 (243)
98 KOG0130 RNA-binding protein RB 99.3 3.2E-12 7E-17 95.2 5.4 72 2-76 80-152 (170)
99 smart00362 RRM_2 RNA recogniti 99.3 1.3E-11 2.8E-16 84.9 7.9 65 2-70 7-71 (72)
100 PLN03213 repressor of silencin 99.3 1.5E-11 3.2E-16 110.3 9.6 78 2-85 18-97 (759)
101 KOG0109 RNA-binding protein LA 99.3 8.9E-12 1.9E-16 104.7 6.8 74 242-323 3-76 (346)
102 KOG0108 mRNA cleavage and poly 99.3 1.5E-11 3.2E-16 112.4 8.1 80 2-84 26-106 (435)
103 KOG4206 Spliceosomal protein s 99.2 2.9E-11 6.4E-16 98.6 8.4 80 240-322 8-91 (221)
104 KOG0107 Alternative splicing f 99.2 1.7E-11 3.7E-16 95.7 6.4 68 2-76 18-85 (195)
105 KOG0121 Nuclear cap-binding pr 99.2 1.9E-11 4E-16 90.4 6.2 70 2-74 44-114 (153)
106 cd00590 RRM RRM (RNA recogniti 99.2 6.7E-11 1.5E-15 81.8 8.7 68 2-72 7-74 (74)
107 KOG0226 RNA-binding proteins [ 99.2 7.4E-12 1.6E-16 103.3 3.2 82 237-318 186-267 (290)
108 KOG4208 Nucleolar RNA-binding 99.2 4.7E-11 1E-15 95.9 6.8 72 2-76 57-130 (214)
109 KOG0146 RNA-binding protein ET 99.2 4.5E-11 9.8E-16 99.3 6.3 84 240-324 18-104 (371)
110 KOG0111 Cyclophilin-type pepti 99.2 1.8E-11 3.9E-16 98.8 3.0 75 2-79 18-93 (298)
111 KOG4208 Nucleolar RNA-binding 99.1 4.5E-10 9.7E-15 90.3 8.3 83 238-320 46-129 (214)
112 KOG0415 Predicted peptidyl pro 99.0 1.8E-10 3.9E-15 99.3 4.7 73 2-77 247-320 (479)
113 KOG0120 Splicing factor U2AF, 99.0 1.4E-09 3E-14 100.3 10.1 81 240-320 288-368 (500)
114 KOG4205 RNA-binding protein mu 99.0 3.3E-10 7.1E-15 99.3 5.0 83 240-323 5-87 (311)
115 KOG0533 RRM motif-containing p 99.0 3E-09 6.5E-14 89.7 9.0 82 238-320 80-161 (243)
116 KOG0132 RNA polymerase II C-te 99.0 1.5E-09 3.2E-14 102.5 7.9 77 240-322 420-496 (894)
117 KOG0153 Predicted RNA-binding 99.0 3E-09 6.4E-14 91.8 8.9 78 238-321 225-303 (377)
118 KOG4661 Hsp27-ERE-TATA-binding 98.9 8.8E-09 1.9E-13 94.2 11.6 84 239-322 403-486 (940)
119 KOG0128 RNA-binding protein SA 98.9 1.5E-10 3.2E-15 110.3 0.2 76 243-319 738-813 (881)
120 KOG4307 RNA binding protein RB 98.9 7E-09 1.5E-13 96.8 9.6 79 238-317 431-510 (944)
121 PF04059 RRM_2: RNA recognitio 98.9 1.8E-08 3.8E-13 73.0 9.7 80 242-321 2-87 (97)
122 KOG0116 RasGAP SH3 binding pro 98.9 1.4E-08 3E-13 92.5 10.4 81 240-321 287-367 (419)
123 KOG0129 Predicted RNA-binding 98.9 2.5E-08 5.5E-13 90.6 11.7 63 240-302 369-432 (520)
124 KOG1548 Transcription elongati 98.9 1.5E-08 3.3E-13 87.5 9.3 81 238-319 131-219 (382)
125 KOG1457 RNA binding protein (c 98.8 4.4E-08 9.5E-13 79.7 11.0 82 241-322 34-119 (284)
126 KOG4660 Protein Mei2, essentia 98.8 2.2E-07 4.8E-12 85.3 16.8 57 2-62 83-139 (549)
127 KOG4210 Nuclear localization s 98.8 4.2E-09 9.1E-14 92.1 5.5 81 241-322 184-265 (285)
128 KOG4660 Protein Mei2, essentia 98.8 4.4E-09 9.4E-14 96.2 4.6 72 238-314 72-143 (549)
129 KOG1365 RNA-binding protein Fu 98.8 2.5E-08 5.4E-13 87.2 9.1 70 242-313 162-235 (508)
130 KOG4454 RNA binding protein (R 98.8 2.4E-09 5.2E-14 86.7 2.6 82 239-322 7-88 (267)
131 KOG4454 RNA binding protein (R 98.7 7.5E-09 1.6E-13 83.9 2.8 59 3-62 18-76 (267)
132 KOG0112 Large RNA-binding prot 98.7 1.7E-08 3.7E-13 97.0 5.2 150 2-321 380-531 (975)
133 KOG0533 RRM motif-containing p 98.7 6.2E-08 1.3E-12 81.9 7.4 72 2-76 91-162 (243)
134 KOG4209 Splicing factor RNPS1, 98.6 5.6E-08 1.2E-12 82.3 6.6 83 238-321 98-180 (231)
135 KOG4676 Splicing factor, argin 98.6 1.7E-08 3.6E-13 88.5 1.7 72 241-317 151-222 (479)
136 KOG0132 RNA polymerase II C-te 98.6 1.1E-07 2.5E-12 90.1 6.7 67 2-76 429-495 (894)
137 KOG0153 Predicted RNA-binding 98.6 1.3E-07 2.8E-12 81.9 6.3 65 4-75 238-302 (377)
138 KOG0226 RNA-binding proteins [ 98.6 8.1E-08 1.7E-12 79.7 4.7 69 2-73 198-267 (290)
139 KOG0106 Alternative splicing f 98.5 1E-07 2.2E-12 78.8 4.6 72 242-321 2-73 (216)
140 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.5E-07 5.4E-12 84.9 6.4 72 2-76 413-485 (940)
141 KOG1995 Conserved Zn-finger pr 98.4 5E-07 1.1E-11 78.9 5.9 85 238-322 63-155 (351)
142 KOG0151 Predicted splicing reg 98.4 6.6E-07 1.4E-11 84.2 7.0 82 238-319 171-255 (877)
143 PF08777 RRM_3: RNA binding mo 98.4 8.4E-07 1.8E-11 65.8 6.1 71 241-317 1-76 (105)
144 PF11608 Limkain-b1: Limkain b 98.4 1.7E-06 3.8E-11 59.6 7.0 67 242-318 3-74 (90)
145 KOG2193 IGF-II mRNA-binding pr 98.3 8.3E-08 1.8E-12 85.0 -0.0 73 243-318 82-154 (584)
146 PF04059 RRM_2: RNA recognitio 98.2 1.2E-05 2.7E-10 58.2 8.0 75 2-76 9-87 (97)
147 KOG4209 Splicing factor RNPS1, 98.1 4E-06 8.6E-11 71.2 4.9 71 2-76 109-180 (231)
148 KOG0116 RasGAP SH3 binding pro 97.9 1.2E-05 2.6E-10 73.7 5.4 70 2-75 296-366 (419)
149 KOG0128 RNA-binding protein SA 97.8 6.3E-07 1.4E-11 86.1 -5.7 70 240-309 666-735 (881)
150 PF08777 RRM_3: RNA binding mo 97.8 5.4E-05 1.2E-09 56.1 5.7 51 2-57 9-59 (105)
151 KOG2314 Translation initiation 97.8 3.7E-05 8.1E-10 71.0 5.8 62 10-73 80-141 (698)
152 KOG3152 TBP-binding protein, a 97.7 2.7E-05 5.8E-10 65.1 2.8 73 240-312 73-157 (278)
153 KOG1996 mRNA splicing factor [ 97.7 0.00014 3.1E-09 61.9 7.0 81 239-319 279-365 (378)
154 KOG2314 Translation initiation 97.6 0.00025 5.4E-09 65.7 8.2 77 240-317 57-140 (698)
155 KOG4849 mRNA cleavage factor I 97.6 0.0062 1.3E-07 53.4 16.1 72 3-76 89-163 (498)
156 COG5175 MOT2 Transcriptional r 97.6 0.00018 4E-09 62.4 6.6 79 241-319 114-201 (480)
157 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00024 5.1E-09 45.6 5.3 52 242-300 2-53 (53)
158 KOG0115 RNA-binding protein p5 97.5 0.00037 7.9E-09 58.5 7.1 64 242-306 32-95 (275)
159 KOG1855 Predicted RNA-binding 97.5 0.00013 2.8E-09 65.4 4.6 72 235-306 225-309 (484)
160 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00049 1.1E-08 50.3 6.7 77 241-319 6-90 (100)
161 KOG2202 U2 snRNP splicing fact 97.5 6E-05 1.3E-09 63.2 2.2 63 9-74 83-146 (260)
162 KOG2202 U2 snRNP splicing fact 97.4 7.8E-05 1.7E-09 62.5 2.0 62 256-318 83-145 (260)
163 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00042 9E-09 44.5 4.5 39 9-52 15-53 (53)
164 PF08952 DUF1866: Domain of un 97.3 0.0017 3.7E-08 50.4 8.5 73 238-319 24-105 (146)
165 KOG0151 Predicted splicing reg 97.3 0.0013 2.8E-08 62.7 8.7 71 2-75 182-256 (877)
166 PF10309 DUF2414: Protein of u 97.2 0.0029 6.3E-08 41.6 7.2 56 240-303 4-62 (62)
167 KOG4210 Nuclear localization s 97.2 0.00024 5.1E-09 62.5 2.4 73 2-78 193-266 (285)
168 KOG2416 Acinus (induces apopto 97.1 0.00058 1.3E-08 63.7 4.8 77 237-319 440-520 (718)
169 KOG4849 mRNA cleavage factor I 97.1 0.00053 1.1E-08 59.9 3.6 76 240-315 79-156 (498)
170 KOG1995 Conserved Zn-finger pr 97.1 0.00051 1.1E-08 60.4 3.5 72 2-76 74-154 (351)
171 PF11608 Limkain-b1: Limkain b 97.0 0.0025 5.4E-08 44.3 5.9 64 2-77 10-78 (90)
172 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0029 6.3E-08 46.2 5.7 66 7-75 18-91 (100)
173 COG5175 MOT2 Transcriptional r 96.8 0.0025 5.5E-08 55.5 5.9 62 13-77 139-204 (480)
174 KOG1996 mRNA splicing factor [ 96.5 0.008 1.7E-07 51.5 6.3 66 8-76 300-367 (378)
175 KOG4285 Mitotic phosphoprotein 96.4 0.097 2.1E-06 45.3 12.5 68 241-316 197-265 (350)
176 KOG4676 Splicing factor, argin 96.4 0.006 1.3E-07 54.4 5.2 74 242-316 8-84 (479)
177 PF08675 RNA_bind: RNA binding 96.4 0.02 4.3E-07 39.8 6.6 56 241-305 9-64 (87)
178 KOG2193 IGF-II mRNA-binding pr 96.4 0.0025 5.4E-08 57.2 2.7 76 242-323 2-78 (584)
179 KOG0129 Predicted RNA-binding 96.3 0.017 3.7E-07 53.5 7.9 65 239-304 257-327 (520)
180 KOG4574 RNA-binding protein (c 96.1 0.023 5E-07 55.6 8.1 73 243-321 300-374 (1007)
181 PF08675 RNA_bind: RNA binding 96.1 0.027 5.9E-07 39.2 6.0 49 2-57 16-64 (87)
182 PF07576 BRAP2: BRCA1-associat 96.0 0.098 2.1E-06 39.0 9.4 67 242-310 14-81 (110)
183 PF15023 DUF4523: Protein of u 96.0 0.041 8.9E-07 42.3 7.1 73 238-318 83-159 (166)
184 KOG4285 Mitotic phosphoprotein 95.7 0.024 5.2E-07 48.9 5.6 62 10-79 212-273 (350)
185 PF08952 DUF1866: Domain of un 95.7 0.038 8.3E-07 43.0 6.2 57 9-76 51-107 (146)
186 PF07576 BRAP2: BRCA1-associat 95.7 0.14 3E-06 38.2 8.9 60 3-63 22-82 (110)
187 KOG1855 Predicted RNA-binding 95.7 0.0095 2.1E-07 53.8 3.2 56 2-57 239-308 (484)
188 KOG2253 U1 snRNP complex, subu 95.6 0.023 5E-07 54.2 5.5 71 238-317 37-107 (668)
189 KOG2591 c-Mpl binding protein, 95.5 0.025 5.5E-07 52.7 5.3 72 239-317 173-248 (684)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.027 5.9E-07 45.9 4.7 69 240-308 6-80 (176)
191 PF04847 Calcipressin: Calcipr 95.3 0.06 1.3E-06 44.2 6.5 61 254-320 8-70 (184)
192 KOG0112 Large RNA-binding prot 95.3 0.0039 8.5E-08 61.1 -0.5 80 238-318 369-448 (975)
193 KOG2416 Acinus (induces apopto 95.2 0.012 2.6E-07 55.3 2.2 67 5-76 455-522 (718)
194 KOG2068 MOT2 transcription fac 95.1 0.0085 1.8E-07 52.6 1.1 78 242-320 78-162 (327)
195 KOG3152 TBP-binding protein, a 95.1 0.017 3.7E-07 48.7 2.7 63 2-64 82-157 (278)
196 PF11767 SET_assoc: Histone ly 94.9 0.11 2.3E-06 34.9 5.6 55 252-315 11-65 (66)
197 PF04847 Calcipressin: Calcipr 94.8 0.065 1.4E-06 43.9 5.3 62 7-76 8-71 (184)
198 KOG4574 RNA-binding protein (c 94.8 0.23 5.1E-06 48.9 9.7 66 5-76 309-374 (1007)
199 PF11767 SET_assoc: Histone ly 94.3 0.18 3.9E-06 33.7 5.7 51 4-62 10-60 (66)
200 PF10309 DUF2414: Protein of u 94.0 0.21 4.5E-06 33.0 5.3 45 5-55 15-62 (62)
201 KOG2135 Proteins containing th 93.9 0.051 1.1E-06 49.9 3.0 76 238-320 369-445 (526)
202 KOG0115 RNA-binding protein p5 93.8 0.052 1.1E-06 45.9 2.9 55 2-56 39-93 (275)
203 PF03880 DbpA: DbpA RNA bindin 93.0 0.32 7E-06 33.4 5.4 58 252-318 12-74 (74)
204 KOG0804 Cytoplasmic Zn-finger 93.0 0.5 1.1E-05 43.4 7.8 68 241-310 74-142 (493)
205 KOG2068 MOT2 transcription fac 92.2 0.094 2E-06 46.2 2.2 69 7-79 91-166 (327)
206 KOG0804 Cytoplasmic Zn-finger 91.9 0.55 1.2E-05 43.1 6.7 60 2-62 82-142 (493)
207 PF03467 Smg4_UPF3: Smg-4/UPF3 91.2 0.23 5E-06 40.5 3.3 75 2-76 15-98 (176)
208 KOG2318 Uncharacterized conser 90.8 1.2 2.6E-05 42.3 7.9 79 238-317 171-302 (650)
209 PF03880 DbpA: DbpA RNA bindin 90.7 1.4 3E-05 30.2 6.5 58 5-73 12-74 (74)
210 PF15023 DUF4523: Protein of u 89.8 1.4 3E-05 34.1 6.2 53 12-74 108-160 (166)
211 KOG4019 Calcineurin-mediated s 88.5 0.44 9.6E-06 38.3 2.9 75 241-321 10-90 (193)
212 PF07292 NID: Nmi/IFP 35 domai 88.5 0.38 8.3E-06 34.2 2.2 24 239-262 50-73 (88)
213 KOG2591 c-Mpl binding protein, 88.3 0.78 1.7E-05 43.3 4.7 57 2-64 183-242 (684)
214 KOG2135 Proteins containing th 88.0 0.28 6E-06 45.3 1.6 61 7-76 386-446 (526)
215 KOG2891 Surface glycoprotein [ 85.0 0.42 9E-06 41.0 1.1 81 240-320 148-267 (445)
216 PRK14548 50S ribosomal protein 83.8 3.1 6.7E-05 29.3 4.9 52 2-55 28-81 (84)
217 KOG4410 5-formyltetrahydrofola 79.7 36 0.00077 29.7 10.6 49 240-294 329-378 (396)
218 TIGR03636 L23_arch archaeal ri 78.3 7.6 0.00016 26.9 5.2 52 2-55 21-74 (77)
219 KOG4019 Calcineurin-mediated s 65.3 6.4 0.00014 31.9 2.7 62 8-76 29-90 (193)
220 PRK11901 hypothetical protein; 65.0 27 0.00059 31.2 6.8 63 238-305 242-306 (327)
221 PF03468 XS: XS domain; Inter 64.4 18 0.00038 27.3 4.9 57 242-301 9-75 (116)
222 KOG4483 Uncharacterized conser 63.7 18 0.00039 33.1 5.5 55 241-302 391-446 (528)
223 PF07530 PRE_C2HC: Associated 63.4 18 0.00038 24.4 4.2 62 256-320 2-64 (68)
224 PF10567 Nab6_mRNP_bdg: RNA-re 60.6 15 0.00032 32.2 4.3 82 238-319 12-106 (309)
225 KOG2295 C2H2 Zn-finger protein 58.8 1.5 3.3E-05 41.4 -2.0 72 239-310 229-300 (648)
226 PTZ00191 60S ribosomal protein 57.7 25 0.00054 27.5 4.7 50 2-53 89-140 (145)
227 PF15513 DUF4651: Domain of un 57.0 24 0.00052 23.2 3.8 18 9-26 9-26 (62)
228 PF10567 Nab6_mRNP_bdg: RNA-re 56.8 29 0.00063 30.5 5.4 49 3-51 24-80 (309)
229 PF03468 XS: XS domain; Inter 56.7 10 0.00022 28.6 2.4 40 6-47 29-68 (116)
230 cd04904 ACT_AAAH ACT domain of 54.4 47 0.001 22.5 5.3 49 9-57 15-65 (74)
231 PF15513 DUF4651: Domain of un 53.7 34 0.00073 22.5 4.1 21 256-276 9-29 (62)
232 PF02714 DUF221: Domain of unk 51.3 18 0.0004 32.4 3.7 35 38-77 1-35 (325)
233 PRK14548 50S ribosomal protein 50.2 85 0.0018 22.1 6.0 57 244-303 23-81 (84)
234 cd04880 ACT_AAAH-PDT-like ACT 48.3 73 0.0016 21.3 5.6 49 9-57 14-66 (75)
235 smart00596 PRE_C2HC PRE_C2HC d 48.2 39 0.00084 22.8 3.8 59 256-317 2-61 (69)
236 PF11411 DNA_ligase_IV: DNA li 48.0 13 0.00028 21.5 1.3 16 5-20 20-35 (36)
237 TIGR03636 L23_arch archaeal ri 47.9 91 0.002 21.5 6.1 56 244-302 16-73 (77)
238 PF14111 DUF4283: Domain of un 47.2 13 0.00028 29.1 1.8 35 241-275 104-139 (153)
239 KOG4213 RNA-binding protein La 46.9 44 0.00096 27.1 4.6 51 6-56 118-171 (205)
240 KOG2318 Uncharacterized conser 45.9 37 0.00081 32.7 4.8 25 36-60 269-293 (650)
241 COG5638 Uncharacterized conser 43.2 96 0.0021 28.7 6.7 76 236-312 141-287 (622)
242 PRK11901 hypothetical protein; 42.9 38 0.00083 30.3 4.1 50 6-57 254-306 (327)
243 PF03439 Spt5-NGN: Early trans 41.9 41 0.00089 23.6 3.5 35 20-58 33-67 (84)
244 cd04905 ACT_CM-PDT C-terminal 41.3 1.1E+02 0.0023 20.8 5.6 49 9-57 16-68 (80)
245 COG5193 LHP1 La protein, small 37.6 14 0.00031 33.7 0.7 61 241-301 174-244 (438)
246 KOG3424 40S ribosomal protein 37.4 97 0.0021 23.3 4.8 44 5-49 34-83 (132)
247 cd04931 ACT_PAH ACT domain of 37.2 1.2E+02 0.0026 21.5 5.4 49 9-57 29-80 (90)
248 PRK11230 glycolate oxidase sub 36.6 1.2E+02 0.0027 29.2 7.0 63 241-304 189-255 (499)
249 PF01071 GARS_A: Phosphoribosy 36.4 95 0.0021 25.8 5.3 48 7-57 25-72 (194)
250 KOG4008 rRNA processing protei 35.4 35 0.00077 28.9 2.6 34 238-271 37-70 (261)
251 KOG4213 RNA-binding protein La 35.3 46 0.001 27.0 3.1 61 241-307 111-173 (205)
252 COG0150 PurM Phosphoribosylami 33.3 14 0.00031 33.2 0.0 50 6-58 273-322 (345)
253 KOG4365 Uncharacterized conser 31.8 6.2 0.00013 36.4 -2.5 78 242-320 4-81 (572)
254 cd04909 ACT_PDH-BS C-terminal 31.4 1.5E+02 0.0032 19.2 5.9 47 9-56 16-63 (69)
255 PRK11230 glycolate oxidase sub 31.4 88 0.0019 30.2 5.0 63 9-76 204-270 (499)
256 COG0150 PurM Phosphoribosylami 30.9 16 0.00036 32.8 0.0 50 253-306 273-322 (345)
257 cd04889 ACT_PDH-BS-like C-term 29.9 1.4E+02 0.003 18.4 5.1 42 9-52 13-55 (56)
258 KOG1295 Nonsense-mediated deca 29.5 53 0.0011 30.0 2.9 64 2-65 15-82 (376)
259 PF08544 GHMP_kinases_C: GHMP 29.3 1.8E+02 0.004 19.6 5.4 44 9-56 37-80 (85)
260 COG4010 Uncharacterized protei 29.1 1.6E+02 0.0034 23.1 4.9 45 249-303 119-163 (170)
261 PRK08559 nusG transcription an 28.2 1.4E+02 0.0031 23.5 5.0 34 21-58 36-69 (153)
262 CHL00123 rps6 ribosomal protei 28.0 1.3E+02 0.0029 21.6 4.4 55 2-56 14-83 (97)
263 KOG1295 Nonsense-mediated deca 27.6 85 0.0018 28.7 3.9 68 241-308 7-77 (376)
264 PRK01178 rps24e 30S ribosomal 27.6 2E+02 0.0043 21.0 5.1 45 5-50 30-80 (99)
265 TIGR02542 B_forsyth_147 Bacter 25.2 31 0.00066 25.7 0.6 43 3-46 83-130 (145)
266 PF08156 NOP5NT: NOP5NT (NUC12 24.8 26 0.00057 23.4 0.2 37 9-55 27-64 (67)
267 PF04026 SpoVG: SpoVG; InterP 24.8 1.4E+02 0.003 21.0 3.8 46 20-73 2-48 (84)
268 PF08206 OB_RNB: Ribonuclease 24.8 14 0.0003 23.8 -1.2 38 282-320 7-45 (58)
269 smart00738 NGN In Spt5p, this 24.2 1.1E+02 0.0023 22.1 3.4 23 36-58 60-82 (106)
270 TIGR00387 glcD glycolate oxida 24.2 1.4E+02 0.003 28.0 4.9 47 10-56 148-198 (413)
271 PRK10905 cell division protein 23.9 1.4E+02 0.0031 26.7 4.5 52 5-57 255-308 (328)
272 TIGR00387 glcD glycolate oxida 23.7 2.4E+02 0.0051 26.4 6.4 51 253-304 144-198 (413)
273 KOG2187 tRNA uracil-5-methyltr 23.6 69 0.0015 30.7 2.7 39 35-76 63-101 (534)
274 cd04930 ACT_TH ACT domain of t 23.4 2.7E+02 0.0059 20.8 5.5 48 10-57 57-106 (115)
275 PF13046 DUF3906: Protein of u 23.3 97 0.0021 20.5 2.5 33 6-40 30-63 (64)
276 PF10281 Ish1: Putative stress 22.7 79 0.0017 18.2 1.9 18 252-269 3-20 (38)
277 PRK10905 cell division protein 22.6 2E+02 0.0043 25.8 5.1 64 238-305 244-308 (328)
278 PTZ00071 40S ribosomal protein 21.8 2.4E+02 0.0053 21.7 4.9 44 5-49 35-85 (132)
279 PRK13259 regulatory protein Sp 21.7 1.5E+02 0.0033 21.4 3.5 25 20-44 2-27 (94)
280 PLN02805 D-lactate dehydrogena 21.3 1.7E+02 0.0037 28.7 5.0 48 9-56 281-332 (555)
281 PLN00039 photosystem II reacti 21.0 1.1E+02 0.0024 22.7 2.7 28 21-49 14-41 (111)
282 KOG4483 Uncharacterized conser 21.0 1.3E+02 0.0028 27.8 3.7 48 3-56 400-448 (528)
283 COG5193 LHP1 La protein, small 20.6 75 0.0016 29.3 2.2 46 8-53 196-244 (438)
284 COG2088 SpoVG Uncharacterized 20.2 1.5E+02 0.0033 20.9 3.2 26 20-45 2-28 (95)
285 KOG1150 Predicted molecular ch 20.2 1.1E+02 0.0025 25.3 2.9 27 1-31 60-86 (250)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=7.7e-34 Score=254.30 Aligned_cols=160 Identities=27% Similarity=0.500 Sum_probs=143.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++||++|+++|+.||+|++|+|++|. +++++|||||+|.++++|++||+.|||..+.+ ++|+|.++++...
T Consensus 115 Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g---r~i~V~~a~p~~~-- 189 (346)
T TIGR01659 115 LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN---KRLKVSYARPGGE-- 189 (346)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC---ceeeeeccccccc--
Confidence 89999999999999999999999999995 89999999999999999999999999987554 5699998754200
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
T Consensus 190 -------------------------------------------------------------------------------- 189 (346)
T TIGR01659 190 -------------------------------------------------------------------------------- 189 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
...
T Consensus 190 -----------------------------------------------------------------------------~~~ 192 (346)
T TIGR01659 190 -----------------------------------------------------------------------------SIK 192 (346)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 012
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 318 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~ 318 (327)
.++|||+|||+.+++++|+++|++||.|++++|++++.+++++|||||+|.+.++|++||+.||+..+.+ +.|+|+++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 4689999999999999999999999999999999999899999999999999999999999999999876 78999998
Q ss_pred cCCCC
Q 020372 319 RDNKQ 323 (327)
Q Consensus 319 ~~~~~ 323 (327)
+.+..
T Consensus 273 ~~~~~ 277 (346)
T TIGR01659 273 EEHGK 277 (346)
T ss_pred Ccccc
Confidence 76543
No 2
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.8e-33 Score=243.46 Aligned_cols=326 Identities=43% Similarity=0.666 Sum_probs=205.6
Q ss_pred CCCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 1 ~Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+..+||.|++++|++||.|++|.|+||.+|.|||+|||.|.+.|-|..||+.|||...+.||..+|.|+||++++++.
T Consensus 131 ~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 131 MLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred hccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHH-HHHHHHhcCC-CCCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC----CCCCccCCCCCCCCC
Q 020372 81 ARRA-QKAQSQANNL-PNADSQHPSLFGALPMGYAPPYNGYGYQAS-GSYGLMQYRLPPMQ----NQPGFHGIIPPVNQG 153 (327)
Q Consensus 81 ~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 153 (327)
.+.. .........+ ...++.....++.+..++.+......+... +.++ ..+...+++ .+.++..+...+.+.
T Consensus 211 ~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~-g~~~L~~l~a~~~qq~~~~~~~~ta~q~ 289 (510)
T KOG0144|consen 211 GKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLG-GLPPLGPLNATQLQQAAALAAAATAAQK 289 (510)
T ss_pred HHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccc-cccCCCCcchhHHHHHHHhhhhcccccC
Confidence 7764 2333333223 223455566677777776666665554433 3334 222222332 121221111111111
Q ss_pred CC-------CCCCCCCCCCCCCCCccCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCC------CCCCC
Q 020372 154 NA-------MRGASPDLSSNMGPRNYAMPPSGFVGSGY--------PAVPGLQYPMPYPGGMLGHRPLN------NSPGS 212 (327)
Q Consensus 154 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 212 (327)
.. +.........-..+.....+.....++.. ...++.+.....++++++..... .....
T Consensus 290 ~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~ 369 (510)
T KOG0144|consen 290 TASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQ 369 (510)
T ss_pred CCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccccccccccc
Confidence 11 11001111111111111111111000000 00011110001111111111000 00000
Q ss_pred C--CCCC-C--------------CCCCCC---------CCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhccC
Q 020372 213 V--SPAV-A--------------NSNPST---------SSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFG 266 (327)
Q Consensus 213 ~--~~~~-~--------------~~~~~~---------~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G 266 (327)
. .+.. + .+.... ............+.+.+..+||.+||.+.-+.+|...|..||
T Consensus 370 ~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG 449 (510)
T KOG0144|consen 370 IGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFG 449 (510)
T ss_pred ccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhcccc
Confidence 0 0000 0 000000 011112223455677888999999999999999999999999
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCC
Q 020372 267 RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNKQNKPY 327 (327)
Q Consensus 267 ~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~~~~p~ 327 (327)
.|++.++..|+.||.+++|+||.|++..+|..||..|||..++.++++|.+.+++....||
T Consensus 450 ~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np~~~ 510 (510)
T KOG0144|consen 450 GVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNPYPR 510 (510)
T ss_pred ceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999888776
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.2e-31 Score=244.97 Aligned_cols=254 Identities=22% Similarity=0.373 Sum_probs=155.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||.+++|++|+++|++||.|..+.++++. +|.++|||||+|++.++|++|++.|||.. +.|+.++|+|.++..+....
T Consensus 97 l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~-~~g~~~~i~v~~a~~~~~~~ 175 (352)
T TIGR01661 97 LPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT-PSGCTEPITVKFANNPSSSN 175 (352)
T ss_pred ccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc-cCCCceeEEEEECCCCCcCC
Confidence 79999999999999999999999999986 88999999999999999999999999975 66766789999997764221
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
.+............ . ... ....+.. ...+..++......
T Consensus 176 ~~~~~~~~~~~~~~-~-----~~~-----------------------~~~~~~~----~~~~~~~~~~~~~~-------- 214 (352)
T TIGR01661 176 SKGLLSQLEAVQNP-Q-----TTR-----------------------VPLSTIL----TAAGIGPMHHAAAR-------- 214 (352)
T ss_pred chhcCchhhcccCc-c-----cCC-----------------------CCccccc----cccCCCCccCcccc--------
Confidence 11100000000000 0 000 0000000 00000000000000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
.............. .... .............+....... .. .............
T Consensus 215 -----------~~~~~~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~ 268 (352)
T TIGR01661 215 -----------FRPSAGDFTAVLAH---QQQQ---------HAVAQQHAAQRASPPATDGQT--AG-LAAGAQIAASDGA 268 (352)
T ss_pred -----------cccCcchhhhhhhh---hhhh---------cccccccccccCCCccccccc--cc-cccCCCCCCCCCC
Confidence 00000000000000 0000 000000000000000000000 00 0000111112345
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
+.+|||+|||+.+++++|+++|++||.|.+++|+.|+.+|+++|||||+|.+.++|.+|+..|||..|+||.|+|+|...
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 67899999999999999999999999999999999998999999999999999999999999999999999999999888
Q ss_pred CCC
Q 020372 321 NKQ 323 (327)
Q Consensus 321 ~~~ 323 (327)
+..
T Consensus 349 ~~~ 351 (352)
T TIGR01661 349 KAY 351 (352)
T ss_pred CCC
Confidence 764
No 4
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=224.20 Aligned_cols=314 Identities=39% Similarity=0.602 Sum_probs=190.8
Q ss_pred CCCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 1 ~Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||...-.|||++.+|+.||.|++|.+++..+|.|||+|||+|.+.-||..||..|||...+.|....|.|+|+++.+++.
T Consensus 26 ml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 26 MLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred hhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999998999999999999887
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCC---CCCC------CC-CCC-CC-CCCCCCCCCCCCCccC--C
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNG---YGYQ------AS-GSY-GL-MQYRLPPMQNQPGFHG--I 146 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~-~~~-~~-~~~~~~~~~~~~~~~~--~ 146 (327)
.++-+++..+..-+.+ +.+.+...++. +..+ .. +.| +. .......+|...+++. +
T Consensus 106 lRRMQQma~qlGm~~P-----------l~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 106 LRRMQQMAGQLGMFNP-----------LALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred HHHHHHHHHHhcccCc-----------cccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 7776666555433311 11111110000 0000 00 111 10 1111112222222211 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC-CCCCCCCCC-CCCC-CCCCCCCCCC--------CCCCCCCCCCC
Q 020372 147 IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVG-SGYPAVPGL-QYPM-PYPGGMLGHR--------PLNNSPGSVSP 215 (327)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~--------~~~~~~~~~~~ 215 (327)
...+... .++.+........+......+...+| ++.+..+.- +-.. .|+.+..... ++.........
T Consensus 175 ~A~Pv~p--~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 175 AAAPVTP--ASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccCCcCc--cccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence 1000000 00111111111111111111111111 011111000 0000 0111110000 00000000000
Q ss_pred C-CC--CC----CCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEE
Q 020372 216 A-VA--NS----NPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFV 288 (327)
Q Consensus 216 ~-~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV 288 (327)
- .+ .. .........-......+.+++|.|||-.||....+.+|...|-+||.|++.+|+.|+.|+.+++|+||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 0 00 00 00001111112233556789999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCCCCCCC
Q 020372 289 SYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNKQNKPY 327 (327)
Q Consensus 289 ~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~~~~p~ 327 (327)
.|+|+.+|+.||..|||..|+=++|+|.+.++|..+|||
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRPY 371 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 371 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCCCC
Confidence 999999999999999999999999999999999999999
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=6.9e-32 Score=221.84 Aligned_cols=170 Identities=21% Similarity=0.463 Sum_probs=142.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
|..+++-++|++.|.+||+|.+++|+||. +++|||||||.|.+.+||++||+.|||+ |+++ |.||-.||..+....
T Consensus 70 ls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq-WlG~--R~IRTNWATRKp~e~ 146 (321)
T KOG0148|consen 70 LSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ-WLGR--RTIRTNWATRKPSEM 146 (321)
T ss_pred cchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe-eecc--ceeeccccccCcccc
Confidence 56789999999999999999999999996 9999999999999999999999999996 4544 789999998873110
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
..+....
T Consensus 147 n~~~ltf------------------------------------------------------------------------- 153 (321)
T KOG0148|consen 147 NGKPLTF------------------------------------------------------------------------- 153 (321)
T ss_pred CCCCccH-------------------------------------------------------------------------
Confidence 0000000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
...-....+.
T Consensus 154 ----------------------------------------------------------------------deV~NQssp~ 163 (321)
T KOG0148|consen 154 ----------------------------------------------------------------------DEVYNQSSPD 163 (321)
T ss_pred ----------------------------------------------------------------------HHHhccCCCC
Confidence 0000112446
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
+|+|||+|++..++|++|+..|++||.|.+|+|++++ ||+||.|++.|+|..||..+|+.+|.|..++..|.|.
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 8999999999999999999999999999999999885 7999999999999999999999999999999999876
Q ss_pred CCC
Q 020372 321 NKQ 323 (327)
Q Consensus 321 ~~~ 323 (327)
...
T Consensus 238 ~~~ 240 (321)
T KOG0148|consen 238 GDD 240 (321)
T ss_pred CCC
Confidence 543
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=4.2e-31 Score=248.51 Aligned_cols=170 Identities=25% Similarity=0.426 Sum_probs=142.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++||++|+++|++||.|.+|++++|+ +|+++|||||+|++.++|++|++.|||.. +.| |.|+|.+........
T Consensus 115 Lp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~G--R~IkV~rp~~~p~a~ 191 (612)
T TIGR01645 115 ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGG--RNIKVGRPSNMPQAQ 191 (612)
T ss_pred CCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eec--ceeeecccccccccc
Confidence 79999999999999999999999999996 89999999999999999999999999976 555 558887432210000
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
T Consensus 192 -------------------------------------------------------------------------------- 191 (612)
T TIGR01645 192 -------------------------------------------------------------------------------- 191 (612)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
.. . .. .......
T Consensus 192 --------------------------------------------~~------~-~~-----------------~~~~~~~ 203 (612)
T TIGR01645 192 --------------------------------------------PI------I-DM-----------------VQEEAKK 203 (612)
T ss_pred --------------------------------------------cc------c-cc-----------------ccccccc
Confidence 00 0 00 0000113
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
.++|||+||++.+++++|+++|+.||.|.+++|.+++.+++++|||||+|.+.++|.+|+..||+..|+|+.|+|.++..
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred CC
Q 020372 321 NK 322 (327)
Q Consensus 321 ~~ 322 (327)
..
T Consensus 284 pP 285 (612)
T TIGR01645 284 PP 285 (612)
T ss_pred Cc
Confidence 43
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=4.9e-31 Score=215.62 Aligned_cols=224 Identities=26% Similarity=0.434 Sum_probs=156.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||..||.+||+++|++||.|...+|+.|. +|.|||.|||.|++.++|++||+.|||.+ ..|+..+|.|+|+..+....
T Consensus 135 lPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~-P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 135 LPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK-PSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred CCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC-CCCCCCCeEEEecCCccccc
Confidence 89999999999999999999999999997 99999999999999999999999999975 88999999999998763322
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
....+..--+... ..+.+...+.. ..++ +..+.++...
T Consensus 214 ~~a~ls~ly~sp~--------------------rr~~Gp~hh~~-----~r~r---------~~~~~~~~~~-------- 251 (360)
T KOG0145|consen 214 NQALLSQLYQSPA--------------------RRYGGPMHHQA-----QRFR---------LDNLLNPHAA-------- 251 (360)
T ss_pred chhhhHHhhcCcc--------------------ccCCCcccchh-----hhhc---------cccccchhhh--------
Confidence 1111100000000 00000000000 0000 0000000000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
...-.|....+...+ .....+.....
T Consensus 252 -------------------------------~~rfsP~~~d~m~~l-----------------------~~~~lp~~~~~ 277 (360)
T KOG0145|consen 252 -------------------------------QARFSPMTIDGMSGL-----------------------AGVNLPGGPGG 277 (360)
T ss_pred -------------------------------hccCCCcccccccee-----------------------eeeccCCCCCC
Confidence 000000000000000 00000111334
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
+++|||-||.++.+|.-|+.+|.+||.|..|+|++|..+++.+||+||...+-++|..||..|||..+++|.|.|+|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 79999999999999999999999999999999999998899999999999999999999999999999999999999765
Q ss_pred CC
Q 020372 321 NK 322 (327)
Q Consensus 321 ~~ 322 (327)
+.
T Consensus 358 k~ 359 (360)
T KOG0145|consen 358 KA 359 (360)
T ss_pred CC
Confidence 53
No 8
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.5e-31 Score=232.71 Aligned_cols=165 Identities=28% Similarity=0.567 Sum_probs=151.6
Q ss_pred CCCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 1 ~Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
.+|.+++|.||+++|++||.|.+|.|+||+ +|.++|+|||.|.+.+||.+|+..||+.+.+.|-..+|.|+||+..+++
T Consensus 41 qIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 41 QIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER 120 (510)
T ss_pred cCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc
Confidence 379999999999999999999999999997 9999999999999999999999999999999998899999999876332
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 020372 80 QARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGA 159 (327)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (327)
.
T Consensus 121 ~------------------------------------------------------------------------------- 121 (510)
T KOG0144|consen 121 I------------------------------------------------------------------------------- 121 (510)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 160 SPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGP 239 (327)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (327)
.
T Consensus 122 -------------------------------------------------------------------------------~ 122 (510)
T KOG0144|consen 122 -------------------------------------------------------------------------------V 122 (510)
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc-eeCC--cEEEEE
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC-QLGG--KKLKVQ 316 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~-~i~g--~~l~v~ 316 (327)
..+.|||+-|+..++|.|++++|++||.|++|+|++|. ++.+||+|||.|++.|.|..||+.|||. .++| ..|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 35789999999999999999999999999999999997 8999999999999999999999999998 5665 689999
Q ss_pred EccCCCCC
Q 020372 317 LKRDNKQN 324 (327)
Q Consensus 317 ~~~~~~~~ 324 (327)
|+.+++.+
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99988754
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=7e-30 Score=233.31 Aligned_cols=159 Identities=27% Similarity=0.580 Sum_probs=142.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++||+||+++|++||+|.+|+|++|+ +|+++|||||+|.+.++|++||+.|||.. +.| +.|+|.++.+...
T Consensus 11 Lp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~-l~g--~~i~v~~a~~~~~-- 85 (352)
T TIGR01661 11 LPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR-LQN--KTIKVSYARPSSD-- 85 (352)
T ss_pred CCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE-ECC--eeEEEEeeccccc--
Confidence 89999999999999999999999999996 89999999999999999999999999976 555 5699998854300
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
T Consensus 86 -------------------------------------------------------------------------------- 85 (352)
T TIGR01661 86 -------------------------------------------------------------------------------- 85 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
...
T Consensus 86 -----------------------------------------------------------------------------~~~ 88 (352)
T TIGR01661 86 -----------------------------------------------------------------------------SIK 88 (352)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 112
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 318 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~ 318 (327)
.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++|++.|||..+.| ++|.|+++
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 4689999999999999999999999999999999988788999999999999999999999999999987 67888887
Q ss_pred cCCC
Q 020372 319 RDNK 322 (327)
Q Consensus 319 ~~~~ 322 (327)
....
T Consensus 169 ~~~~ 172 (352)
T TIGR01661 169 NNPS 172 (352)
T ss_pred CCCC
Confidence 6544
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.9e-30 Score=210.38 Aligned_cols=160 Identities=28% Similarity=0.563 Sum_probs=145.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||..||+|||+.+|...|+|++|+++||+ +|+|.||+||.|-+++||++||..|||-.+.. ++|+|.||++..+
T Consensus 49 LPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~---KTIKVSyARPSs~-- 123 (360)
T KOG0145|consen 49 LPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN---KTIKVSYARPSSD-- 123 (360)
T ss_pred cccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeecc---ceEEEEeccCChh--
Confidence 89999999999999999999999999998 99999999999999999999999999976433 6799999987521
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
T Consensus 124 -------------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 124 -------------------------------------------------------------------------------- 123 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
...
T Consensus 124 -----------------------------------------------------------------------------~Ik 126 (360)
T KOG0145|consen 124 -----------------------------------------------------------------------------SIK 126 (360)
T ss_pred -----------------------------------------------------------------------------hhc
Confidence 224
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 318 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~ 318 (327)
+..|||.+||..+|..+|+.+|++||.|+..+|+.|..+|.+||.+||.|+..++|+.||+.|||..=.| ..|.|+|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 5689999999999999999999999999999999999999999999999999999999999999997665 58999998
Q ss_pred cCCCC
Q 020372 319 RDNKQ 323 (327)
Q Consensus 319 ~~~~~ 323 (327)
+...+
T Consensus 207 nnPsq 211 (360)
T KOG0145|consen 207 NNPSQ 211 (360)
T ss_pred CCccc
Confidence 86544
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=3.6e-29 Score=241.74 Aligned_cols=178 Identities=34% Similarity=0.556 Sum_probs=149.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC---CCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM---EGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~---~g~~~~l~v~~a~~~~~ 78 (327)
||+++||++|+++|+.||.|.++.+.++.+|+++|||||+|++.++|.+|++.|+|..+. .| +.|.|.++..+.+
T Consensus 186 l~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g--~~l~v~~a~~k~e 263 (562)
T TIGR01628 186 LDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEG--KKLYVGRAQKRAE 263 (562)
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccc--eeeEeecccChhh
Confidence 789999999999999999999999999999999999999999999999999999998754 14 4589998877755
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 020372 79 RQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRG 158 (327)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (327)
................
T Consensus 264 r~~~~~~~~~~~~~~~---------------------------------------------------------------- 279 (562)
T TIGR01628 264 REAELRRKFEELQQER---------------------------------------------------------------- 279 (562)
T ss_pred hHHHHHhhHHhhhhhh----------------------------------------------------------------
Confidence 4333221111110000
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 159 ASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEG 238 (327)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (327)
...
T Consensus 280 -----------------------------------------------------------------------------~~~ 282 (562)
T TIGR01628 280 -----------------------------------------------------------------------------KMK 282 (562)
T ss_pred -----------------------------------------------------------------------------hcc
Confidence 002
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
...++|||+||+..+++++|+++|++||.|.+++|+.+. +|+++|||||+|.+.++|.+|+..|||+.++|++|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 235789999999999999999999999999999999994 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020372 319 RDNKQ 323 (327)
Q Consensus 319 ~~~~~ 323 (327)
..+..
T Consensus 362 ~~k~~ 366 (562)
T TIGR01628 362 QRKEQ 366 (562)
T ss_pred cCcHH
Confidence 87653
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=2.6e-28 Score=230.41 Aligned_cols=168 Identities=29% Similarity=0.539 Sum_probs=141.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++|+++|+++|++||.|.+|++++|+ +|+++|||||+|.+.++|.+|++ |+|..+. | ++|.|.++.......
T Consensus 97 lp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~-g--~~i~v~~~~~~~~~~ 172 (457)
T TIGR01622 97 LALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL-G--RPIIVQSSQAEKNRA 172 (457)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC-C--eeeEEeecchhhhhh
Confidence 89999999999999999999999999996 89999999999999999999995 8998754 4 668888764431111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
... . ..
T Consensus 173 ~~~-------~-~~------------------------------------------------------------------ 178 (457)
T TIGR01622 173 AKA-------A-TH------------------------------------------------------------------ 178 (457)
T ss_pred hhc-------c-cc------------------------------------------------------------------
Confidence 000 0 00
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
. ....+.
T Consensus 179 ------------------------------------------------------------~-------------~~~~p~ 185 (457)
T TIGR01622 179 ------------------------------------------------------------Q-------------PGDIPN 185 (457)
T ss_pred ------------------------------------------------------------c-------------CCCCCC
Confidence 0 000112
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
.++|||+|||+.+++++|+++|++||.|..|.+..++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 57999999999999999999999999999999999988889999999999999999999999999999999999999763
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.3e-28 Score=237.90 Aligned_cols=159 Identities=30% Similarity=0.508 Sum_probs=140.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++||++|+++|++||.|.+|+|++|+ +++++|||||+|.+.++|++|++.|++..+. | ++|+|.|+......
T Consensus 8 Lp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~-g--k~i~i~~s~~~~~~- 83 (562)
T TIGR01628 8 LDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG-G--KPIRIMWSQRDPSL- 83 (562)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-C--eeEEeecccccccc-
Confidence 89999999999999999999999999997 7999999999999999999999999997654 4 56999987542100
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
.
T Consensus 84 -~------------------------------------------------------------------------------ 84 (562)
T TIGR01628 84 -R------------------------------------------------------------------------------ 84 (562)
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
...
T Consensus 85 -----------------------------------------------------------------------------~~~ 87 (562)
T TIGR01628 85 -----------------------------------------------------------------------------RSG 87 (562)
T ss_pred -----------------------------------------------------------------------------ccC
Confidence 001
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
..+|||+|||.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.....
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 3579999999999999999999999999999999986 899999999999999999999999999999999999976554
Q ss_pred C
Q 020372 321 N 321 (327)
Q Consensus 321 ~ 321 (327)
+
T Consensus 167 ~ 167 (562)
T TIGR01628 167 K 167 (562)
T ss_pred c
Confidence 4
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.4e-26 Score=218.73 Aligned_cols=79 Identities=30% Similarity=0.439 Sum_probs=73.0
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..++++|||+||++ .+++++|+++|+.||.|.+|+|++++ +|+|||+|.+.++|.+|+..|||..|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999999864 6899999999999999999999999999999999
Q ss_pred EccCC
Q 020372 317 LKRDN 321 (327)
Q Consensus 317 ~~~~~ 321 (327)
+++.+
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.9e-27 Score=206.24 Aligned_cols=224 Identities=20% Similarity=0.322 Sum_probs=144.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH--
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE-- 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~-- 78 (327)
||.++.|+||.-+|.+.|+|.+++|++|+ +|.+||||||.|.+.++|++||+.||+..|-.|+. |.|..+.....
T Consensus 91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~--igvc~Svan~RLF 168 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKL--LGVCVSVANCRLF 168 (506)
T ss_pred CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCE--eEEEEeeecceeE
Confidence 79999999999999999999999999995 99999999999999999999999999999998854 77776654321
Q ss_pred --------HHHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC------CCCCCCCCCC---CCCCCCCC
Q 020372 79 --------RQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQA------SGSYGLMQYR---LPPMQNQP 141 (327)
Q Consensus 79 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~ 141 (327)
...+-..-.+...+-.- +-..|+. +-++..+.|. +..+..+.
T Consensus 169 iG~IPK~k~keeIlee~~kVteGVv---------------------dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 169 IGNIPKTKKKEEILEEMKKVTEGVV---------------------DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred eccCCccccHHHHHHHHHhhCCCee---------------------EEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 11111111111100000 0000000 0011111110 00000000
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 142 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSN 221 (327)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (327)
.+.... -.........|.- +
T Consensus 228 l~~g~~----------------------------------------------------klwgn~~tVdWAe-------p- 247 (506)
T KOG0117|consen 228 LMPGKI----------------------------------------------------KLWGNAITVDWAE-------P- 247 (506)
T ss_pred ccCCce----------------------------------------------------eecCCcceeeccC-------c-
Confidence 000000 0000000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020372 222 PSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301 (327)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~ 301 (327)
....+ ......-..|||+||+.++|+|.|+.+|++||.|.+|+.++| ||||.|.+.++|.+|++
T Consensus 248 -------~~e~d-ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 248 -------EEEPD-EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred -------ccCCC-hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 00000 001222368999999999999999999999999999988765 99999999999999999
Q ss_pred HhcCceeCCcEEEEEEccCCCCC
Q 020372 302 MMNGCQLGGKKLKVQLKRDNKQN 324 (327)
Q Consensus 302 ~l~g~~i~g~~l~v~~~~~~~~~ 324 (327)
.+||++|+|..|.|.+||+..+.
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HhcCceecCceEEEEecCChhhh
Confidence 99999999999999999976543
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=9.4e-27 Score=218.93 Aligned_cols=231 Identities=17% Similarity=0.278 Sum_probs=141.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH----
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK---- 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~---- 77 (327)
||.++||++|+++|++||.|.+|+|++|.+|++||||||+|.+.|+|++||+.|||..+..|+ .|.|..+....
T Consensus 66 Lp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr--~l~V~~S~~~~rLFV 143 (578)
T TIGR01648 66 IPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR--LLGVCISVDNCRLFV 143 (578)
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCc--cccccccccCceeEe
Confidence 899999999999999999999999999999999999999999999999999999998876664 36666554211
Q ss_pred ------HHHHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q 020372 78 ------ERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 151 (327)
Q Consensus 78 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (327)
................. ......... . ...-..+++.+.|....... .+...+....
T Consensus 144 gNLP~~~TeeeL~eeFskv~egv-----v~vIv~~~~-~---------~kgKnRGFAFVeF~s~edAa-~AirkL~~gk- 206 (578)
T TIGR01648 144 GGIPKNKKREEILEEFSKVTEGV-----VDVIVYHSA-A---------DKKKNRGFAFVEYESHRAAA-MARRKLMPGR- 206 (578)
T ss_pred ecCCcchhhHHHHHHhhcccCCc-----eEEEEeccc-c---------ccCccCceEEEEcCCHHHHH-HHHHHhhccc-
Confidence 11111111001000000 000000000 0 00001122222222110000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 152 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 231 (327)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (327)
....+ ..+...+. .+. .
T Consensus 207 ----------------------------------------------i~l~G-r~I~VdwA-------~p~---------~ 223 (578)
T TIGR01648 207 ----------------------------------------------IQLWG-HVIAVDWA-------EPE---------E 223 (578)
T ss_pred ----------------------------------------------eEecC-ceEEEEee-------ccc---------c
Confidence 00000 00000000 000 0
Q ss_pred CCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC
Q 020372 232 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAF--GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 309 (327)
Q Consensus 232 ~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~ 309 (327)
...........+|||+||+..+++++|+++|++| |.|.+|.++ ++||||+|.+.++|++|++.|||.+|+
T Consensus 224 ~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~ 295 (578)
T TIGR01648 224 EVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELE 295 (578)
T ss_pred cccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 0000112235789999999999999999999999 999999775 359999999999999999999999999
Q ss_pred CcEEEEEEccCCC
Q 020372 310 GKKLKVQLKRDNK 322 (327)
Q Consensus 310 g~~l~v~~~~~~~ 322 (327)
|+.|+|++++++.
T Consensus 296 Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 296 GSEIEVTLAKPVD 308 (578)
T ss_pred CEEEEEEEccCCC
Confidence 9999999998754
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.4e-25 Score=210.36 Aligned_cols=189 Identities=25% Similarity=0.384 Sum_probs=135.2
Q ss_pred CCc-CCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~-~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||. .+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.|||..+ .| +.|+|.+++......
T Consensus 283 L~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l-~g--~~l~v~~s~~~~~~~ 355 (481)
T TIGR01649 283 LHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKL-FG--KPLRVCPSKQQNVQP 355 (481)
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEE-CC--ceEEEEEcccccccC
Confidence 676 69999999999999999999999973 68999999999999999999999875 45 569999986542110
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
.+. +....+.. .+. .
T Consensus 356 ~~~----------------------~~~~~~~~-~~~-------------d----------------------------- 370 (481)
T TIGR01649 356 PRE----------------------GQLDDGLT-SYK-------------D----------------------------- 370 (481)
T ss_pred CCC----------------------CcCcCCCc-ccc-------------c-----------------------------
Confidence 000 00000000 000 0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
+... . ........ .........+
T Consensus 371 -----------------------------------~~~~-----~----~~r~~~~~-------------~~~~~~~~~p 393 (481)
T TIGR01649 371 -----------------------------------YSSS-----R----NHRFKKPG-------------SANKNNIQPP 393 (481)
T ss_pred -----------------------------------ccCC-----c----cccCCCcc-------------cccccccCCC
Confidence 0000 0 00000000 0000011346
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcE------
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGR--VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK------ 312 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~--i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~------ 312 (327)
+.+|||+|||..+++++|+++|++||. |..+++..++ + ..+|+|||+|.+.++|..|+..|||..|.++.
T Consensus 394 s~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~ 471 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYH 471 (481)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccce
Confidence 789999999999999999999999998 8888887654 3 35899999999999999999999999999985
Q ss_pred EEEEEccCC
Q 020372 313 LKVQLKRDN 321 (327)
Q Consensus 313 l~v~~~~~~ 321 (327)
|+|+|++++
T Consensus 472 lkv~fs~~~ 480 (481)
T TIGR01649 472 LKVSFSTSR 480 (481)
T ss_pred EEEEeccCC
Confidence 999998764
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=179.27 Aligned_cols=160 Identities=31% Similarity=0.456 Sum_probs=142.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
|+..++++-|+++|-+.|+|+++++.+|+ +...+|||||+|.++|||+-||+-||..++.+ |+|+|..+....+
T Consensus 17 ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg---rpIrv~kas~~~~-- 91 (203)
T KOG0131|consen 17 LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG---RPIRVNKASAHQK-- 91 (203)
T ss_pred CCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC---ceeEEEecccccc--
Confidence 68889999999999999999999999998 78899999999999999999999999877554 7899998862200
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
+
T Consensus 92 ------------n------------------------------------------------------------------- 92 (203)
T KOG0131|consen 92 ------------N------------------------------------------------------------------- 92 (203)
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
..-
T Consensus 93 -----------------------------------------------------------------------------l~v 95 (203)
T KOG0131|consen 93 -----------------------------------------------------------------------------LDV 95 (203)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 011
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
+..|||+||.+.+++.-|.+.|+.||.+.+. +|++++.+|.++||+||.|++.|.+.+|+..+||..+..++|+|++++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 3689999999999999999999999998775 899999899999999999999999999999999999999999999877
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 554
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.2e-25 Score=195.91 Aligned_cols=239 Identities=24% Similarity=0.356 Sum_probs=152.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||+.+.+.||+.+|+.||.|++|.|.+..+|+-.|||||+|....+|.+|++.+||..|. | |+|-|.||..+.....
T Consensus 125 LPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~-g--R~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 125 LPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID-G--RPVAVDWAVDKDTYED 201 (678)
T ss_pred CCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec-C--ceeEEeeecccccccc
Confidence 899999999999999999999999999889988899999999999999999999998855 4 7899999988765533
Q ss_pred HHHHHHH------HHhcCCC-CCCCCC--CCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q 020372 82 RRAQKAQ------SQANNLP-NADSQH--PSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 152 (327)
Q Consensus 82 ~~~~~~~------~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
......+ ....... ..+... ....+. .+...-... .+..-...
T Consensus 202 ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e--------~d~edeEe~--------------------D~~se~~e 253 (678)
T KOG0127|consen 202 TAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGE--------EDSEDEEET--------------------DGNSEAFE 253 (678)
T ss_pred cchhhhhhhhhccchhhhcccccccccccchhccc--------ccccccccc--------------------cccchhhh
Confidence 2111000 0000010 000000 000000 000000000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q 020372 153 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSG-GTG 231 (327)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 231 (327)
+. ...-.........- .+ ....+.. ...
T Consensus 254 e~------------------------------------------~~~Eee~~~vDd~e--------~S-~~~~~~k~~q~ 282 (678)
T KOG0127|consen 254 EG------------------------------------------EESEEEEDDVDDEE--------SS-GKKESDKKAQN 282 (678)
T ss_pred cc------------------------------------------cccccccccccccc--------cc-ccCcccchhcc
Confidence 00 00000000000000 00 0000000 000
Q ss_pred CCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-----cC-
Q 020372 232 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-----NG- 305 (327)
Q Consensus 232 ~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l-----~g- 305 (327)
......-..+.+|||+|||+++|+|+|.+.|++||.|..+.|+.++.|+++.|.|||.|.+..+|+.||... .|
T Consensus 283 k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~ 362 (678)
T KOG0127|consen 283 KTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGS 362 (678)
T ss_pred ccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCce
Confidence 001223345689999999999999999999999999999999999999999999999999999999999987 24
Q ss_pred ceeCCcEEEEEEccCCC
Q 020372 306 CQLGGKKLKVQLKRDNK 322 (327)
Q Consensus 306 ~~i~g~~l~v~~~~~~~ 322 (327)
..+.||.|.|..+-.++
T Consensus 363 ~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 363 VLLDGRLLKVTLAVTRK 379 (678)
T ss_pred EEEeccEEeeeeccchH
Confidence 67899999999877654
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.2e-25 Score=199.55 Aligned_cols=184 Identities=21% Similarity=0.357 Sum_probs=147.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||++++.++|.++|+.+|+|..|.++.+. .+.+||||||.|...||+++|++.+.+.. +.| |.|+|.+|..+....
T Consensus 13 lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k-f~G--r~l~v~~A~~R~r~e 89 (678)
T KOG0127|consen 13 LPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK-FEG--RILNVDPAKKRARSE 89 (678)
T ss_pred CCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc-ccc--eecccccccccccch
Confidence 89999999999999999999999999997 67999999999999999999999999976 566 559999997764332
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
.............+
T Consensus 90 ~~~~~e~~~veK~~------------------------------------------------------------------ 103 (678)
T KOG0127|consen 90 EVEKGENKAVEKPI------------------------------------------------------------------ 103 (678)
T ss_pred hcccccchhhhccc------------------------------------------------------------------
Confidence 11000000000000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
....+.-.-...+
T Consensus 104 -------------------------------------------------------------------~q~~~~k~~v~~~ 116 (678)
T KOG0127|consen 104 -------------------------------------------------------------------EQKRPTKAKVDLP 116 (678)
T ss_pred -------------------------------------------------------------------ccCCcchhhccCc
Confidence 0000000001223
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
.++|.|+|||+.+...+|+.+|+.||.|.+|.|++.+ +|+-+|||||.|.+..+|..|++.+|+.+|+||.|-|+||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 6899999999999999999999999999999999776 777779999999999999999999999999999999999877
Q ss_pred CC
Q 020372 321 NK 322 (327)
Q Consensus 321 ~~ 322 (327)
+.
T Consensus 196 Kd 197 (678)
T KOG0127|consen 196 KD 197 (678)
T ss_pred cc
Confidence 65
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=3e-24 Score=205.51 Aligned_cols=184 Identities=21% Similarity=0.283 Sum_probs=135.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+.+|+++|+++|+.||.|..+.++++. +|+++|||||+|.+.++|.+||+.|||..|. | +.|.|.++.......
T Consensus 303 lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~-~--~~l~v~~a~~~~~~~ 379 (509)
T TIGR01642 303 LPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG-D--NKLHVQRACVGANQA 379 (509)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC-C--eEEEEEECccCCCCC
Confidence 89999999999999999999999999996 8999999999999999999999999998754 4 459999986431100
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
... . . -+ ..
T Consensus 380 ~~~----------~--------~-~~---------------------------------------~~------------- 388 (509)
T TIGR01642 380 TID----------T--------S-NG---------------------------------------MA------------- 388 (509)
T ss_pred Ccc----------c--------c-cc---------------------------------------cc-------------
Confidence 000 0 0 00 00
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
+. ......... ........+
T Consensus 389 --------~~------------------------------------~~~~~~~~~----------------~~~~~~~~~ 408 (509)
T TIGR01642 389 --------PV------------------------------------TLLAKALSQ----------------SILQIGGKP 408 (509)
T ss_pred --------cc------------------------------------ccccccchh----------------hhccccCCC
Confidence 00 000000000 000011335
Q ss_pred CceEEEeCCCCCC----------CHHHHHHHhhccCCeeEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhcCce
Q 020372 241 GANLFIYHIPQEF----------GDQELGNAFQAFGRVLSAKVFVDK---ATGVSKCFGFVSYESPASAQNAIAMMNGCQ 307 (327)
Q Consensus 241 ~~~l~v~nLp~~~----------t~~~L~~~F~~~G~i~~v~i~~~~---~~~~~~G~afV~f~~~~~A~~A~~~l~g~~ 307 (327)
..+|+|.|+...- ..++|+++|++||.|.+|.|+++. .++...|+|||+|.+.++|+.|+..|||+.
T Consensus 409 s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 409 TKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred ceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCE
Confidence 6799999996421 136899999999999999998753 235668999999999999999999999999
Q ss_pred eCCcEEEEEEcc
Q 020372 308 LGGKKLKVQLKR 319 (327)
Q Consensus 308 i~g~~l~v~~~~ 319 (327)
|+|+.|.|.|..
T Consensus 489 ~~gr~v~~~~~~ 500 (509)
T TIGR01642 489 FNDRVVVAAFYG 500 (509)
T ss_pred ECCeEEEEEEeC
Confidence 999999999854
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=5.2e-24 Score=201.19 Aligned_cols=72 Identities=35% Similarity=0.601 Sum_probs=65.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+.+||++|+++|+.||.|..|.++++. +|+++|||||+|.+.++|.+|++.|||..| .| ++|+|.|+...
T Consensus 194 l~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i-~g--~~i~v~~a~~~ 266 (457)
T TIGR01622 194 LHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL-AG--RPIKVGYAQDS 266 (457)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE-CC--EEEEEEEccCC
Confidence 78999999999999999999999999997 679999999999999999999999999764 55 67999998743
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=4.8e-24 Score=204.12 Aligned_cols=82 Identities=29% Similarity=0.526 Sum_probs=77.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||+.+++++|+++|+.||.|..+.|+.++.+|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CC
Q 020372 320 DN 321 (327)
Q Consensus 320 ~~ 321 (327)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 43
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.7e-24 Score=192.94 Aligned_cols=149 Identities=32% Similarity=0.548 Sum_probs=135.8
Q ss_pred CcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHHH
Q 020372 3 PKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQAR 82 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~ 82 (327)
.+++||..|+++|+++|+|.+|++++|. + |.|||||.|.+++||++|++.||... +.| ++|++.|+...
T Consensus 7 g~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~-~~~--~~~rim~s~rd------ 75 (369)
T KOG0123|consen 7 GPDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDV-LKG--KPIRIMWSQRD------ 75 (369)
T ss_pred CCcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcc-cCC--cEEEeehhccC------
Confidence 3689999999999999999999999999 6 99999999999999999999999976 445 67999999664
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 020372 83 RAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPD 162 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (327)
T Consensus 76 -------------------------------------------------------------------------------- 75 (369)
T KOG0123|consen 76 -------------------------------------------------------------------------------- 75 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 020372 163 LSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGA 242 (327)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (327)
..
T Consensus 76 ------------------------------------------------------------------------------~~ 77 (369)
T KOG0123|consen 76 ------------------------------------------------------------------------------PS 77 (369)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 12
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCCC
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNK 322 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~ 322 (327)
.|||+||++.++..+|.++|+.||.|.+|++..+. +| ++|| ||+|+++++|.+|++.+||..+.|++|.|.....++
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 29999999999999999999999999999999996 56 9999 999999999999999999999999999998776655
Q ss_pred C
Q 020372 323 Q 323 (327)
Q Consensus 323 ~ 323 (327)
.
T Consensus 155 e 155 (369)
T KOG0123|consen 155 E 155 (369)
T ss_pred h
Confidence 4
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=3.4e-24 Score=178.30 Aligned_cols=146 Identities=26% Similarity=0.526 Sum_probs=131.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||..+++++|+.+|++||+|++|+|+++ ||||..++...|+.||..|||.+ +.| ..|.|+-++.+
T Consensus 10 Lp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYt-Lhg--~nInVeaSksK----- 74 (346)
T KOG0109|consen 10 LPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYT-LHG--VNINVEASKSK----- 74 (346)
T ss_pred CCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccce-ecc--eEEEEEecccc-----
Confidence 8999999999999999999999999999 99999999999999999999987 455 44788777665
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
T Consensus 75 -------------------------------------------------------------------------------- 74 (346)
T KOG0109|consen 75 -------------------------------------------------------------------------------- 74 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
+..+
T Consensus 75 ----------------------------------------------------------------------------sk~s 78 (346)
T KOG0109|consen 75 ----------------------------------------------------------------------------SKAS 78 (346)
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 2245
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
++|+|+|+.+.++.++|+..|++||.|++++|++| |+||.|+-.++|..|++.|++.+|+|++|+|.++.++
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 78999999999999999999999999999999875 9999999999999999999999999999999998776
Q ss_pred CCCCC
Q 020372 322 KQNKP 326 (327)
Q Consensus 322 ~~~~p 326 (327)
=+.+|
T Consensus 151 lrtap 155 (346)
T KOG0109|consen 151 LRTAP 155 (346)
T ss_pred cccCC
Confidence 54433
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=8.5e-21 Score=179.14 Aligned_cols=72 Identities=24% Similarity=0.394 Sum_probs=66.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++++++|+++|+.||.|++|+|.+|+ +|++||||||+|++.++|.+||+.|||.. ++| +.|+|.++..+
T Consensus 212 Lp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~e-lgG--r~LrV~kAi~p 284 (612)
T TIGR01645 212 VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD-LGG--QYLRVGKCVTP 284 (612)
T ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCe-eCC--eEEEEEecCCC
Confidence 78999999999999999999999999996 78899999999999999999999999986 555 56999999865
No 27
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=8.1e-22 Score=168.86 Aligned_cols=167 Identities=25% Similarity=0.412 Sum_probs=139.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
+.|++.|+-|+..|.+||+|+++.+.-|. +++.||||||+|+-+|.|.-|++.|||.. ++| |.|+|.+.....+..
T Consensus 121 IsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m-lGG--RNiKVgrPsNmpQAQ 197 (544)
T KOG0124|consen 121 ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGG--RNIKVGRPSNMPQAQ 197 (544)
T ss_pred eEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc-ccC--ccccccCCCCCcccc
Confidence 56889999999999999999999999997 99999999999999999999999999975 666 568887554321100
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
. -....
T Consensus 198 p-iID~v------------------------------------------------------------------------- 203 (544)
T KOG0124|consen 198 P-IIDMV------------------------------------------------------------------------- 203 (544)
T ss_pred h-HHHHH-------------------------------------------------------------------------
Confidence 0 00000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
.++...
T Consensus 204 --------------------------------------------------------------------------qeeAk~ 209 (544)
T KOG0124|consen 204 --------------------------------------------------------------------------QEEAKK 209 (544)
T ss_pred --------------------------------------------------------------------------HHHHHh
Confidence 001112
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
=.+|||..+-++.+++||+.+|+.||+|..|.+.+++..+..+||+|++|.+..+-..|+..||-..++|.-|+|-.+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 3689999999999999999999999999999999999778899999999999999999999999999999999996543
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=7.2e-22 Score=177.91 Aligned_cols=170 Identities=26% Similarity=0.525 Sum_probs=139.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
|+..+++.||++||+.+|+|.+|.++.|+ .+++||.|||+|.+.+....|| .|.|+.+++ .+|.|+..+..+...
T Consensus 187 la~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg---~pv~vq~sEaeknr~ 262 (549)
T KOG0147|consen 187 LARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLG---VPVIVQLSEAEKNRA 262 (549)
T ss_pred HhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccC---ceeEecccHHHHHHH
Confidence 56678999999999999999999999997 8999999999999999999999 899987554 568888776543331
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
... .... +
T Consensus 263 a~~-------s~a~-----------~------------------------------------------------------ 270 (549)
T KOG0147|consen 263 ANA-------SPAL-----------Q------------------------------------------------------ 270 (549)
T ss_pred Hhc-------cccc-----------c------------------------------------------------------
Confidence 110 0000 0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
......+
T Consensus 271 -------------------------------------------------------------------------~k~~~~p 277 (549)
T KOG0147|consen 271 -------------------------------------------------------------------------GKGFTGP 277 (549)
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 0000112
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
...|||+||-+++++++|+.+|++||.|..|.+.+|.++|+++||+|++|.+.++|.+|++.|||.++-|+.|+|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 23499999999999999999999999999999999988999999999999999999999999999999999999987543
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.8e-21 Score=175.55 Aligned_cols=163 Identities=29% Similarity=0.515 Sum_probs=141.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
|+.++|.++|+++|+.||.|++|++.+|.+| ++|| ||+|+++++|.+||++|||.. +.++ .|.|.....+.++..
T Consensus 84 l~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~k--ki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 84 LDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGML-LNGK--KIYVGLFERKEEREA 158 (369)
T ss_pred CCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcc-cCCC--eeEEeeccchhhhcc
Confidence 7899999999999999999999999999999 9999 999999999999999999964 5564 499988887755443
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
+...
T Consensus 159 ~~~~---------------------------------------------------------------------------- 162 (369)
T KOG0123|consen 159 PLGE---------------------------------------------------------------------------- 162 (369)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 3100
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
....-
T Consensus 163 ---------------------------------------------------------------------------~~~~~ 167 (369)
T KOG0123|consen 163 ---------------------------------------------------------------------------YKKRF 167 (369)
T ss_pred ---------------------------------------------------------------------------hhhhh
Confidence 01123
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
..+++.|++.+++++.|.++|..+|.|.++.++.+. .++++||+||+|.+.++|..|+..|++..+++..+.|.-+..+
T Consensus 168 t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 168 TNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred hhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 568899999999999999999999999999999996 7889999999999999999999999999999999999876553
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=181.01 Aligned_cols=167 Identities=25% Similarity=0.472 Sum_probs=139.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCC----cccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQT----SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~----skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
|+++.|.++|..+|+++|.|.++.|.+.+++. |.|||||+|.++|+|+.|++.|+|+. ++|. .|.|.++..+.
T Consensus 523 lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv-ldGH--~l~lk~S~~k~ 599 (725)
T KOG0110|consen 523 LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV-LDGH--KLELKISENKP 599 (725)
T ss_pred CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce-ecCc--eEEEEeccCcc
Confidence 78999999999999999999999998776553 66999999999999999999999976 6664 49999987321
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 020372 78 ERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMR 157 (327)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (327)
.....+
T Consensus 600 ~~~~gK-------------------------------------------------------------------------- 605 (725)
T KOG0110|consen 600 ASTVGK-------------------------------------------------------------------------- 605 (725)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 158 GASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIE 237 (327)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (327)
. ...
T Consensus 606 ---------------------------------------------------------------------------~-~~~ 609 (725)
T KOG0110|consen 606 ---------------------------------------------------------------------------K-KSK 609 (725)
T ss_pred ---------------------------------------------------------------------------c-ccc
Confidence 0 000
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....+.|+|+|||+..+-.+++.+|..||.|.+|+|+.....+..+|||||+|-++++|.+|++.|.+.-+-||+|.+.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 22357899999999999999999999999999999998754667899999999999999999999999999999999999
Q ss_pred ccCC
Q 020372 318 KRDN 321 (327)
Q Consensus 318 ~~~~ 321 (327)
++.-
T Consensus 690 A~~d 693 (725)
T KOG0110|consen 690 AKSD 693 (725)
T ss_pred hccc
Confidence 8753
No 31
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.83 E-value=9.4e-21 Score=165.12 Aligned_cols=165 Identities=23% Similarity=0.400 Sum_probs=140.3
Q ss_pred CCCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 1 ~Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
.|++++||+.|++.|+.||+|.+|.+++|+ +++++||+||+|++++...+++..-.. .++| |.|.+..|.++...
T Consensus 13 gisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h--~~dg--r~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 13 GLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH--KLDG--RSVEPKRAVSREDQ 88 (311)
T ss_pred CcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccc--ccCC--ccccceeccCcccc
Confidence 478999999999999999999999999997 899999999999999999999865443 3666 45888877665221
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 020372 80 QARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGA 159 (327)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (327)
....
T Consensus 89 ~~~~---------------------------------------------------------------------------- 92 (311)
T KOG4205|consen 89 TKVG---------------------------------------------------------------------------- 92 (311)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 160 SPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGP 239 (327)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (327)
...
T Consensus 93 -----------------------------------------------------------------------------~~~ 95 (311)
T KOG4205|consen 93 -----------------------------------------------------------------------------RHL 95 (311)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 011
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
....|||++||.+++++++++.|.+||.|..+.++.|+.+.+++||+||.|.+.+++.+++.. +-+.|.|+.+.|+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeecc
Confidence 356899999999999999999999999999999999999999999999999999999998885 8999999999999887
Q ss_pred CCCC
Q 020372 320 DNKQ 323 (327)
Q Consensus 320 ~~~~ 323 (327)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 7653
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=2.8e-19 Score=140.92 Aligned_cols=86 Identities=36% Similarity=0.580 Sum_probs=80.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
...+++|||+||++.+++++|+++|++||.|.+++|+.++.+++++|||||+|++.++|++|++.||+..|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020372 318 KRDNKQ 323 (327)
Q Consensus 318 ~~~~~~ 323 (327)
++.+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 886653
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.80 E-value=3.7e-19 Score=160.53 Aligned_cols=73 Identities=30% Similarity=0.491 Sum_probs=65.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
|.+++||++|+.+|.+||+|+.|.+.+|. +|++||||||+|.+.++|.+|++.|||. .+-| |.|+|..-..+.
T Consensus 286 LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngf-elAG--r~ikV~~v~~r~ 359 (549)
T KOG0147|consen 286 LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGF-ELAG--RLIKVSVVTERV 359 (549)
T ss_pred cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccc-eecC--ceEEEEEeeeec
Confidence 67899999999999999999999999997 9999999999999999999999999994 4555 678887765543
No 34
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.78 E-value=5.8e-17 Score=139.64 Aligned_cols=224 Identities=23% Similarity=0.368 Sum_probs=143.6
Q ss_pred cCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHHHH
Q 020372 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARR 83 (327)
Q Consensus 4 ~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~ 83 (327)
|.+|.|-|+.++-..|+|.+|.|.+. ||. .|.|+|++.+.|++|.+.|||..|.-|| ++|+|+||++.+-...+.
T Consensus 132 YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFdsv~~AqrAk~alNGADIYsGC-CTLKIeyAkP~rlnV~kn 206 (494)
T KOG1456|consen 132 YPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFDSVEVAQRAKAALNGADIYSGC-CTLKIEYAKPTRLNVQKN 206 (494)
T ss_pred cccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeechhHHHHHHHhhcccccccccc-eeEEEEecCcceeeeeec
Confidence 57899999999999999999999887 443 8999999999999999999999999999 999999999864332221
Q ss_pred HHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 020372 84 AQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDL 163 (327)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (327)
.. ..+...++. . .+.+.+ |...+. -+.+
T Consensus 207 d~--DtwDyTlp~-------------~--~~~~~~---------g~~~~~---r~~~----------------------- 234 (494)
T KOG1456|consen 207 DK--DTWDYTLPD-------------L--RGPYDP---------GRNHYD---RQRQ----------------------- 234 (494)
T ss_pred CC--ccccccCCC-------------C--CCCCCC---------CCCCCc---cccC-----------------------
Confidence 00 000000000 0 000000 000000 0000
Q ss_pred CCCCCCCccCCCCCCCCC--CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 164 SSNMGPRNYAMPPSGFVG--SGYPAV----PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIE 237 (327)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (327)
|.....-+....| +.|... +....|..+-.+....+ ....+..
T Consensus 235 -----p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~--------------------------g~a~p~g 283 (494)
T KOG1456|consen 235 -----PAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGR--------------------------GYASPGG 283 (494)
T ss_pred -----CCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCC--------------------------CCCCCCC
Confidence 0000000111111 111110 00011111000000000 0011123
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..+++++.|-+|... ++.+.|.++|+.||.|.+|++++.+ .|.|+|+..+..+.++|+..||+..+.|.+|.|+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 567899999999984 7889999999999999999999876 5789999999999999999999999999999999
Q ss_pred EccC
Q 020372 317 LKRD 320 (327)
Q Consensus 317 ~~~~ 320 (327)
+++.
T Consensus 359 ~SkQ 362 (494)
T KOG1456|consen 359 VSKQ 362 (494)
T ss_pred eccc
Confidence 8774
No 35
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=1.2e-16 Score=140.22 Aligned_cols=76 Identities=34% Similarity=0.551 Sum_probs=70.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....|+|||+|||+++||+.|++-|..||.|..+.|+ +.|+++| .|.|.++++|++||..|+|..++||.|.|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4567999999999999999999999999999999995 3677777 9999999999999999999999999999987
Q ss_pred c
Q 020372 318 K 318 (327)
Q Consensus 318 ~ 318 (327)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.78 E-value=2.4e-17 Score=133.91 Aligned_cols=199 Identities=22% Similarity=0.379 Sum_probs=136.8
Q ss_pred CCcCCCHHHHHH----HhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSA----LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~----~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
|+..+..++|+. +|+.||+|.+|...+. .+.||.|||.|.+.+.|..|+..|+|..+++ ++|+|.||..+.
T Consensus 17 LnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg---K~mriqyA~s~s 91 (221)
T KOG4206|consen 17 LNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYG---KPMRIQYAKSDS 91 (221)
T ss_pred ccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccC---chhheecccCcc
Confidence 455667777777 9999999998887764 6789999999999999999999999987665 679999999876
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 020372 78 ERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMR 157 (327)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (327)
+...+... ..+.+.+....-... ...
T Consensus 92 dii~~~~~---~~v~~~~k~~~~~~~-----------------------------------------~~~---------- 117 (221)
T KOG4206|consen 92 DIIAQAPG---TFVEKEKKINGEILA-----------------------------------------RIK---------- 117 (221)
T ss_pred chhhccCc---eeccccCcccccccc-----------------------------------------ccC----------
Confidence 55444211 000000000000000 000
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 158 GASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIE 237 (327)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (327)
.+.... |..+. ....+ ..++. ....
T Consensus 118 -----------------~~~~~n--------g~~~~---------~~~~~-----~p~p~----------------~~~~ 142 (221)
T KOG4206|consen 118 -----------------QPLDTN--------GHFYN---------MNRMN-----LPPPF----------------LAQM 142 (221)
T ss_pred -----------------Cccccc--------ccccc---------ccccc-----CCCCc----------------cccC
Confidence 000000 00000 00000 00000 0122
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC-CcEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~ 316 (327)
.++..++|+.|||..++.+.|..+|++|....+++++... .+.|||+|.+...|..|...|.|..+. ...|+|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5577899999999999999999999999999999888764 579999999999999999999999997 8899998
Q ss_pred Ecc
Q 020372 317 LKR 319 (327)
Q Consensus 317 ~~~ 319 (327)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 864
No 37
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=4.4e-17 Score=146.42 Aligned_cols=86 Identities=33% Similarity=0.519 Sum_probs=81.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 236 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 236 ~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
......++|||+|||+++++++|+++|+.||.|++|+|+.|+.+++++|||||+|.+.++|++|++.||+..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34557899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCC
Q 020372 316 QLKRDN 321 (327)
Q Consensus 316 ~~~~~~ 321 (327)
+++++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998754
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.75 E-value=3.2e-17 Score=142.81 Aligned_cols=210 Identities=24% Similarity=0.381 Sum_probs=136.2
Q ss_pred CcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHHH
Q 020372 3 PKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQAR 82 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~ 82 (327)
-+.+|-|-|..+|++||.|..+.-..+.+|- .|+|+|.+.+.|..|...|+|+.|..|| ++|++.|++--.-..+-
T Consensus 159 ~ypVslDVLHqvFS~fG~VlKIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrId~Sklt~LnvKy 234 (492)
T KOG1190|consen 159 FYPVSLDVLHQVFSKFGFVLKIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRIDFSKLTDLNVKY 234 (492)
T ss_pred eeeeEHHHHHHHHhhcceeEEEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCce-eEEEeehhhcccceeec
Confidence 3678899999999999999988877665432 6999999999999999999999999999 99999999753111111
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCccCCCCCCCCCCCCCCC
Q 020372 83 RAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQ---PGFHGIIPPVNQGNAMRGA 159 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 159 (327)
...+ +-.|.++.++.. +....+.+
T Consensus 235 nndk------------------------------------------SRDyTnp~LP~gd~~p~l~~~~~----------- 261 (492)
T KOG1190|consen 235 NNDK------------------------------------------SRDYTNPDLPVGDGQPSLDQLMA----------- 261 (492)
T ss_pred cccc------------------------------------------cccccCCCCCCCccccccchhhh-----------
Confidence 0000 000000000000 00000000
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 160 SPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGP 239 (327)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (327)
+.++ ..+..+| .+...|.+.... ..+. ...+.+
T Consensus 262 -----------------aa~~--~~~~~~g--~p~aip~~~~~a---------------~~a~-----------~~~~~~ 294 (492)
T KOG1190|consen 262 -----------------AAFG--SVPAVHG--APLAIPSGAAGA---------------NAAD-----------GKIESP 294 (492)
T ss_pred -----------------cccc--ccccccC--CcccCCccchhh---------------cccc-----------cccccC
Confidence 0000 0000000 000111110000 0000 000001
Q ss_pred -CCceEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 240 -PGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 240 -~~~~l~v~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
.+++|.|.||.+ .+|.+.|..+|..||.|.+|+|+.++. --|.|+|.+...|+.|+..|+|..+.||+|+|.+
T Consensus 295 ~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 295 SANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred CCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 268999999976 589999999999999999999998763 3799999999999999999999999999999999
Q ss_pred ccCC
Q 020372 318 KRDN 321 (327)
Q Consensus 318 ~~~~ 321 (327)
+|..
T Consensus 370 SKH~ 373 (492)
T KOG1190|consen 370 SKHT 373 (492)
T ss_pred ccCc
Confidence 8754
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=8.4e-18 Score=139.09 Aligned_cols=82 Identities=35% Similarity=0.566 Sum_probs=78.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
...+||+.|...++-|+|++.|.+||+|.+++|++|.+|++++||+||-|-+.++|++||..|||.+|++|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 020372 321 NK 322 (327)
Q Consensus 321 ~~ 322 (327)
|.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 64
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=3.6e-17 Score=145.97 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=122.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||+++|++||.+||+.+ .|+.+.+.++ +|+..|-|||+|.+.||+++|+++-. .. +.. |-|.|--+........
T Consensus 18 LPwsat~~ei~~Ff~~~-~I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~AlkkdR-~~-mg~--RYIEVf~~~~~e~d~~ 91 (510)
T KOG4211|consen 18 LPWSATEKEILDFFSNC-GIENLEIPRR-NGRPSGEAYVEFTSEEDVEKALKKDR-ES-MGH--RYIEVFTAGGAEADWV 91 (510)
T ss_pred CCccccHHHHHHHHhcC-ceeEEEEecc-CCCcCcceEEEeechHHHHHHHHhhH-HH-hCC--ceEEEEccCCcccccc
Confidence 89999999999999999 6777666554 79999999999999999999996533 22 322 5688887755411000
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
.+
T Consensus 92 ~~------------------------------------------------------------------------------ 93 (510)
T KOG4211|consen 92 MR------------------------------------------------------------------------------ 93 (510)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.. ........
T Consensus 94 ----------------------------------------------~~------------------------g~~s~~~d 103 (510)
T KOG4211|consen 94 ----------------------------------------------PG------------------------GPNSSAND 103 (510)
T ss_pred ----------------------------------------------CC------------------------CCCCCCCC
Confidence 00 00001135
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
.+|.+++||+.++++||.+||+..-.|.. +.++.++ .++++|-|||.|++.+.|+.|+.. |...|+.|-|.|-.
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 68999999999999999999999966665 4456665 899999999999999999999997 88888888888853
No 41
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=8.5e-18 Score=123.66 Aligned_cols=90 Identities=14% Similarity=0.285 Sum_probs=84.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
...++||||+||++.++||.|.++|+.+|.|.+|.+=.|+.+..++|||||+|.+.++|..|++.++|..++.+.|+|+|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45689999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 020372 318 KRDNKQNKPY 327 (327)
Q Consensus 318 ~~~~~~~~p~ 327 (327)
...-.++|.|
T Consensus 113 D~GF~eGRQy 122 (153)
T KOG0121|consen 113 DAGFVEGRQY 122 (153)
T ss_pred cccchhhhhh
Confidence 8877777765
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.6e-16 Score=135.31 Aligned_cols=72 Identities=24% Similarity=0.399 Sum_probs=63.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCC-CCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~-g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
+..+.+|+||+.+|..||+|+.|.+-++.+ +..|||||++|.+..+...||..||=.. ++| ..|||..+.++
T Consensus 218 vHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFD-LGG--QyLRVGk~vTP 290 (544)
T KOG0124|consen 218 VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD-LGG--QYLRVGKCVTP 290 (544)
T ss_pred cCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhh-ccc--ceEecccccCC
Confidence 457899999999999999999999999985 4689999999999999999999999755 455 45999988765
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.72 E-value=1e-15 Score=134.43 Aligned_cols=82 Identities=28% Similarity=0.519 Sum_probs=75.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..+....+||.||.+.+....|...|.-.|.|.++.+-.|+ .|.++|+|.++|+++-+|..||.+|++..+..+++.+.
T Consensus 211 ~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~R 289 (608)
T KOG4212|consen 211 SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVR 289 (608)
T ss_pred CCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCCccccceee
Confidence 45566789999999999999999999999999999999998 68999999999999999999999999988888998888
Q ss_pred Ecc
Q 020372 317 LKR 319 (327)
Q Consensus 317 ~~~ 319 (327)
+.+
T Consensus 290 l~~ 292 (608)
T KOG4212|consen 290 LDR 292 (608)
T ss_pred ccc
Confidence 754
No 44
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.8e-17 Score=133.47 Aligned_cols=83 Identities=29% Similarity=0.488 Sum_probs=80.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
+.++|.|.||+.++++++|.++|.+||.|.+++|.+|++||+++|||||.|.+.++|++||..|||+-++.--|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
++.
T Consensus 268 P~~ 270 (270)
T KOG0122|consen 268 PSN 270 (270)
T ss_pred CCC
Confidence 863
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.71 E-value=5.1e-16 Score=132.80 Aligned_cols=181 Identities=19% Similarity=0.280 Sum_probs=133.5
Q ss_pred CCcCCCHHHHHHHhcccCCee--------EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 2 LPKNVSEAEVSALFSIYGTIK--------DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~--------~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
||.++|.+++.++|+++|.|. .|+|.++.+|+-||-|+|.|-..|+++-|++.|++.. +.| +.|+|..|
T Consensus 142 LP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~-~rg--~~~rVerA 218 (382)
T KOG1548|consen 142 LPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE-LRG--KKLRVERA 218 (382)
T ss_pred CCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc-ccC--cEEEEehh
Confidence 899999999999999999885 4899999999999999999999999999999999976 445 45999998
Q ss_pred CChHHH-----------HHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 74 DTEKER-----------QARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 142 (327)
Q Consensus 74 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (327)
+-..+. ...+......++..... .
T Consensus 219 kfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw---------~------------------------------------ 253 (382)
T KOG1548|consen 219 KFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDW---------R------------------------------------ 253 (382)
T ss_pred hhhhccCcCcccccccccccHHHHHHHHHhhccc---------C------------------------------------
Confidence 743321 00111111111111100 0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 143 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 222 (327)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (327)
+-.
T Consensus 254 --------------------------------------------------------------pd~--------------- 256 (382)
T KOG1548|consen 254 --------------------------------------------------------------PDR--------------- 256 (382)
T ss_pred --------------------------------------------------------------CCc---------------
Confidence 000
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEeCCCCC----CC-------HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeC
Q 020372 223 STSSSGGTGSGGQIEGPPGANLFIYHIPQE----FG-------DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYE 291 (327)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~----~t-------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~ 291 (327)
....-....++|.++|+-.. .+ .++|++-|++||.|.+|.|. +..+.|.+-|.|.
T Consensus 257 ----------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d~hPdGvvtV~f~ 322 (382)
T KOG1548|consen 257 ----------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----DRHPDGVVTVSFR 322 (382)
T ss_pred ----------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----ccCCCceeEEEeC
Confidence 00001223578999998432 22 46788889999999998775 4558999999999
Q ss_pred CHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 292 SPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 292 ~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
|.++|..||+.|+|++|+||+|..++...+
T Consensus 323 n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 323 NNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred ChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 999999999999999999999998875443
No 46
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=4.8e-16 Score=125.27 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=68.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeC-CCC-CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~-~~g-~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
||.++...+|+.+|+.|-..+.+.|... +.+ ..+-+|||.|.+..+|..|+.+|||..|..-+..+|++.+|+...+.
T Consensus 42 LP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~ 121 (284)
T KOG1457|consen 42 LPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKR 121 (284)
T ss_pred CCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCccc
Confidence 8999999999999999999998888555 433 46789999999999999999999999988888889999999876443
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=1.8e-16 Score=109.61 Aligned_cols=70 Identities=33% Similarity=0.690 Sum_probs=67.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 244 l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
|||+|||.++++++|+++|++||.|..+.+..+ .+++.+|+|||+|.+.++|..|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 4899999999999999999999999999999999986
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.6e-15 Score=117.65 Aligned_cols=171 Identities=23% Similarity=0.401 Sum_probs=123.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||.++.|+||+++|.+||.|.+|.|.... ..-+||||+|+++-||+.||.--+|.. ++|+. |+|.++..-.....
T Consensus 14 LP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYd-ydg~r--LRVEfprggr~s~~ 88 (241)
T KOG0105|consen 14 LPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYD-YDGCR--LRVEFPRGGRSSSD 88 (241)
T ss_pred CCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccc-cCcce--EEEEeccCCCcccc
Confidence 89999999999999999999998874332 235799999999999999999999987 66754 99999865411000
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
. -+.|+...
T Consensus 89 ~------------------------------~G~y~ggg----------------------------------------- 97 (241)
T KOG0105|consen 89 R------------------------------RGSYSGGG----------------------------------------- 97 (241)
T ss_pred c------------------------------ccccCCCC-----------------------------------------
Confidence 0 00000000
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
- + ..+ .............
T Consensus 98 ----------------------r-----------------g------Ggg-----------------~gg~rgppsrrSe 115 (241)
T KOG0105|consen 98 ----------------------R-----------------G------GGG-----------------GGGRRGPPSRRSE 115 (241)
T ss_pred ----------------------C-----------------C------CCC-----------------CCcccCCcccccc
Confidence 0 0 000 0000000112235
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC--CcEEEEEE
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG--GKKLKVQL 317 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~ 317 (327)
.+|.|.+||.+-+|+||++...+.|.|-...+.+|- ++.|+|...|+-..|+..|+...+. |-...+.+
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 789999999999999999999999999999888764 8999999999999999999988764 55555544
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=1e-15 Score=105.96 Aligned_cols=70 Identities=31% Similarity=0.657 Sum_probs=65.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 244 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 244 l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
|||+|||+.+++++|+++|+.||.|..+++..++. ++++|+|||+|.+.++|.+|+..+++..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999975 99999999999999999999999999999999985
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=5.1e-16 Score=122.42 Aligned_cols=72 Identities=22% Similarity=0.449 Sum_probs=66.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++||.|.+|.+++|+ +++++|||||+|.+.|+|++|++.|||.. ++| +.|+|.++..+
T Consensus 42 L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~-i~G--r~l~V~~a~~~ 114 (144)
T PLN03134 42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE-LNG--RHIRVNPANDR 114 (144)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEEeCCcC
Confidence 89999999999999999999999999996 89999999999999999999999999976 555 56999999764
No 51
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3.1e-16 Score=127.76 Aligned_cols=80 Identities=28% Similarity=0.415 Sum_probs=74.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
.-+.|||++|++.+..|+|+++|++||+|.++.|+.|+.+||++||+||+|++.++|.+||+. -.-.|+||+-.+.++-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 346899999999999999999999999999999999999999999999999999999999997 5678899999988765
Q ss_pred C
Q 020372 320 D 320 (327)
Q Consensus 320 ~ 320 (327)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 52
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=7.5e-15 Score=128.16 Aligned_cols=184 Identities=24% Similarity=0.358 Sum_probs=129.4
Q ss_pred CcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHHH
Q 020372 3 PKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQAR 82 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~ 82 (327)
++.+|++.|..+|+.||+|.+|+|+.++ +-.|+|+|.+...|+-|++.|+|..+++ +.|||.+++...-...+
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~g---k~lrvt~SKH~~vqlp~ 379 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYG---KKLRVTLSKHTNVQLPR 379 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecC---ceEEEeeccCccccCCC
Confidence 5679999999999999999999999985 2389999999999999999999998776 56999999875211110
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 020372 83 RAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPD 162 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (327)
..+ . ..++...|.....+.+..
T Consensus 380 egq--------------~--------d~glT~dy~~spLhrfkk------------------------------------ 401 (492)
T KOG1190|consen 380 EGQ--------------E--------DQGLTKDYGNSPLHRFKK------------------------------------ 401 (492)
T ss_pred CCC--------------c--------cccccccCCCCchhhccC------------------------------------
Confidence 000 0 000000000000000000
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 020372 163 LSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGA 242 (327)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (327)
++ ...-....+++.
T Consensus 402 -----------------------------------------------pg-------------------sKN~~ni~Ppsa 415 (492)
T KOG1190|consen 402 -----------------------------------------------PG-------------------SKNYQNIFPPSA 415 (492)
T ss_pred -----------------------------------------------cc-------------------cccccccCCchh
Confidence 00 000011245678
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC-CcEEEEEEccCC
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKVQLKRDN 321 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~~~~~ 321 (327)
+|++.|+|.+++||+|+++|..-|........ .++.+-++.+.+++.|+|..|+..+|...++ +..|+|+|+++.
T Consensus 416 tlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 416 TLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred heeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999999998876554333 2223459999999999999999999999996 569999998763
No 53
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=142.00 Aligned_cols=77 Identities=31% Similarity=0.530 Sum_probs=70.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCC----CcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATG----VSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~----~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
++|||+||+++++.++|..+|...|.|.++.|...+ ++ .+.|||||+|.+.++|++|++.|+|..++|+.|.|++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 449999999999999999999999999999888765 33 2569999999999999999999999999999999999
Q ss_pred cc
Q 020372 318 KR 319 (327)
Q Consensus 318 ~~ 319 (327)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.2e-15 Score=118.58 Aligned_cols=78 Identities=23% Similarity=0.481 Sum_probs=72.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..+.|||+||+..+++.||..+|..||.|..|+|... +.|||||+|++..+|+.|+..|+|+.|.|.+|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3689999999999999999999999999999999875 58999999999999999999999999999999999977
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 544
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1e-14 Score=124.09 Aligned_cols=83 Identities=33% Similarity=0.554 Sum_probs=75.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
......+|+|.|+|+..-+-||+.+|++||.|.+|.|+.+ ..-++||+||+|++.++|++|.+.|||..++||+|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 3445689999999999999999999999999999999876 45689999999999999999999999999999999999
Q ss_pred EccCC
Q 020372 317 LKRDN 321 (327)
Q Consensus 317 ~~~~~ 321 (327)
.+..+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 76543
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.3e-15 Score=123.11 Aligned_cols=72 Identities=28% Similarity=0.543 Sum_probs=66.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|+.+++|+||+++|.+||.|.+|.|.+|+ +|.+||||||.|.+.++|++||+.|||.-+.. -.|+|.|++++
T Consensus 197 Lsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~---LILrvEwskP~ 269 (270)
T KOG0122|consen 197 LSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN---LILRVEWSKPS 269 (270)
T ss_pred CccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce---EEEEEEecCCC
Confidence 88999999999999999999999999997 99999999999999999999999999976443 45999999875
No 57
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=6.9e-15 Score=124.01 Aligned_cols=76 Identities=11% Similarity=0.289 Sum_probs=70.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
.++|||+||++.+++++|+++|+.||.|.+|.|..+++ ++|||||+|.+.++|..|+. |+|..|.|+.|+|..+.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998753 57999999999999999996 899999999999998764
No 58
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.60 E-value=5.6e-15 Score=127.90 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=67.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCC-eeE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGR-VLS--AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~-i~~--v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..+|.+++||+..+.|||.+||..|-. |.. |+++.+. .|++.|.|||+|.+.|+|.+|....|.+.+.+|-|.|-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 679999999999999999999999955 444 7888885 89999999999999999999999988888888888874
No 59
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=7.6e-15 Score=123.33 Aligned_cols=81 Identities=25% Similarity=0.522 Sum_probs=77.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
+=+||||.-|+++++|.+|++.|+.||.|+.|+|+.|+.||+++|||||+|++..+-..|.+..+|..|+|+.|.|.+-+
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999855
Q ss_pred C
Q 020372 320 D 320 (327)
Q Consensus 320 ~ 320 (327)
.
T Consensus 180 g 180 (335)
T KOG0113|consen 180 G 180 (335)
T ss_pred c
Confidence 3
No 60
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.59 E-value=3.8e-15 Score=118.78 Aligned_cols=79 Identities=28% Similarity=0.482 Sum_probs=76.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..+|.|-||-+-++.++|+.+|++||.|-.|+|..|+.|+.++|||||.|....+|+.|+++|+|.+++|+.|+|.+|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999876
No 61
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=7.4e-15 Score=138.90 Aligned_cols=79 Identities=23% Similarity=0.514 Sum_probs=72.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC-CcEEEEEEc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKVQLK 318 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~~ 318 (327)
..++|||+|||.++++++|+++|++||.|.+++|++| .+|+++|||||+|.+.++|++||+.||+..+. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 59999999999999999999999999999985 788777654
Q ss_pred c
Q 020372 319 R 319 (327)
Q Consensus 319 ~ 319 (327)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 3
No 62
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=3.3e-16 Score=122.32 Aligned_cols=80 Identities=28% Similarity=0.505 Sum_probs=76.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
.+..|||+|||+..||.||.-+|++||+|..|.+++|+.||+++||||+.|++..+-..|++.|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998643
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=5.8e-15 Score=121.28 Aligned_cols=160 Identities=26% Similarity=0.465 Sum_probs=121.0
Q ss_pred CCCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 1 ~Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
.||+.+.+.||..+|+.||.|.+|.+.. ||+||+|++.-||..||-.|||+. +.|.. +.|.++.......
T Consensus 8 ~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~-l~~e~--~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 8 RLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKE-LCGER--LVVEHARGKRRGR 77 (216)
T ss_pred ccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCce-eccee--eeeeccccccccc
Confidence 3899999999999999999999988844 499999999999999999999965 66653 8888886530000
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
|.
T Consensus 78 -------------------------g~----------------------------------------------------- 79 (216)
T KOG0106|consen 78 -------------------------GR----------------------------------------------------- 79 (216)
T ss_pred -------------------------CC-----------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
+.+ +.+.- ... .-......
T Consensus 80 ------------------------------------~~~--g~r~~--~~~---------------------~~~~p~~s 98 (216)
T KOG0106|consen 80 ------------------------------------PRG--GDRRS--DSR---------------------RYRPPSRT 98 (216)
T ss_pred ------------------------------------CCC--CCccc--hhh---------------------ccCCcccc
Confidence 000 00000 000 00011335
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
.++++|.++...+.|.+|.+.|+++|.+..... .++++||+|++.++|.+|+..|++..+.++.|++..
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 689999999999999999999999999954433 245899999999999999999999999999999843
No 64
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=1.5e-14 Score=129.19 Aligned_cols=79 Identities=20% Similarity=0.482 Sum_probs=72.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHHhcCceeCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP--ASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~--~~A~~A~~~l~g~~i~g~~l~v 315 (327)
.....+|||+||++.++++||+.+|+.||.|.+|.|++ ++| ||||||+|.+. .++.+||..|||..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34568999999999999999999999999999999994 467 99999999987 7899999999999999999999
Q ss_pred EEccC
Q 020372 316 QLKRD 320 (327)
Q Consensus 316 ~~~~~ 320 (327)
..|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 98875
No 65
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=107.70 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=80.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
...++.|||.++-...++++|.+.|+.||+|+.+++-.|+.+|-.+|||+|+|++.++|+.|+..+||..+-|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
+..+.
T Consensus 149 ~Fv~g 153 (170)
T KOG0130|consen 149 CFVKG 153 (170)
T ss_pred EEecC
Confidence 76443
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=1.9e-14 Score=99.33 Aligned_cols=61 Identities=43% Similarity=0.799 Sum_probs=57.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g 63 (327)
||.++|+++|+++|+.||.|..+.+..+.+++++|+|||+|++.++|++|++.|||.. +.|
T Consensus 6 lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~-~~~ 66 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKK-ING 66 (70)
T ss_dssp ETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred CCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCE-ECc
Confidence 7999999999999999999999999998889999999999999999999999999976 444
No 67
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.5e-14 Score=126.30 Aligned_cols=83 Identities=28% Similarity=0.532 Sum_probs=78.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC-CcEEEEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKVQL 317 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~ 317 (327)
..+|.|||+.||.++.|++|.-+|++.|+|.++++++|+.+|.+||||||+|.+.++|++||+.||+++|. ||.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45799999999999999999999999999999999999989999999999999999999999999999994 99999997
Q ss_pred ccCC
Q 020372 318 KRDN 321 (327)
Q Consensus 318 ~~~~ 321 (327)
+..+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 6554
No 68
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=5.3e-14 Score=97.11 Aligned_cols=72 Identities=39% Similarity=0.714 Sum_probs=67.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
+|+|+|||..+++++|+++|++||.|..+.+..++ +.++|+|||+|.+.++|.+|+..+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998775 7789999999999999999999999999999999874
No 69
>smart00360 RRM RNA recognition motif.
Probab=99.51 E-value=8.9e-14 Score=95.62 Aligned_cols=71 Identities=38% Similarity=0.681 Sum_probs=67.0
Q ss_pred EeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 246 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 246 v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
|+|||..+++++|+++|++||.|..+.+..++.+++++|+|||+|.+.++|.+|+..+++..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988778999999999999999999999999999999999873
No 70
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=8.8e-14 Score=127.53 Aligned_cols=179 Identities=20% Similarity=0.289 Sum_probs=130.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||..+++++++++...||.+....++.|. +|.++||||.+|-++.....||+.|||..+.+ ..|.|..|.......
T Consensus 297 lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd---~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 297 LPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD---KKLVVQRAIVGASNA 373 (500)
T ss_pred CcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcC---ceeEeehhhccchhc
Confidence 78999999999999999999999999996 79999999999999999999999999987554 559999886652211
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
..... . .+. .+..
T Consensus 374 ~~~~~--------~----------------------------------------~~~----~~~~--------------- 386 (500)
T KOG0120|consen 374 NVNFN--------I----------------------------------------SQS----QVPG--------------- 386 (500)
T ss_pred cccCC--------c----------------------------------------ccc----cccc---------------
Confidence 10000 0 000 0000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
+. .........+
T Consensus 387 ----------------------------------------------------i~----------------~~~~q~~g~~ 398 (500)
T KOG0120|consen 387 ----------------------------------------------------IP----------------LLMTQMAGIP 398 (500)
T ss_pred ----------------------------------------------------ch----------------hhhcccCCCc
Confidence 00 0000112334
Q ss_pred CceEEEeCCCC--CC-C-------HHHHHHHhhccCCeeEEEEEec-C--CCCCcceEEEEEeCCHHHHHHHHHHhcCce
Q 020372 241 GANLFIYHIPQ--EF-G-------DQELGNAFQAFGRVLSAKVFVD-K--ATGVSKCFGFVSYESPASAQNAIAMMNGCQ 307 (327)
Q Consensus 241 ~~~l~v~nLp~--~~-t-------~~~L~~~F~~~G~i~~v~i~~~-~--~~~~~~G~afV~f~~~~~A~~A~~~l~g~~ 307 (327)
..+|++.|+=. .. . -|+++.-|++||.|..|.|.++ . +.....|-.||+|.+.+++++|.+.|+|+.
T Consensus 399 t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK 478 (500)
T KOG0120|consen 399 TEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK 478 (500)
T ss_pred chhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCce
Confidence 56666666521 11 1 1577788999999999999887 2 223467889999999999999999999999
Q ss_pred eCCcEEEEEEc
Q 020372 308 LGGKKLKVQLK 318 (327)
Q Consensus 308 i~g~~l~v~~~ 318 (327)
|.||.+...|.
T Consensus 479 F~nRtVvtsYy 489 (500)
T KOG0120|consen 479 FANRTVVASYY 489 (500)
T ss_pred eCCcEEEEEec
Confidence 99999998874
No 71
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.5e-14 Score=116.41 Aligned_cols=85 Identities=27% Similarity=0.467 Sum_probs=81.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||++|-..+++.-|...|-+||.|..|.++.|-++++.|||+||+|...|+|.+||+.||+.++.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
+++.+
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 99764
No 72
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=4.8e-14 Score=128.59 Aligned_cols=81 Identities=33% Similarity=0.609 Sum_probs=78.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
+++||+|+|+++++|+|.++|+..|.|.+++++.|+++|+++||+|++|.+.++|.+|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred C
Q 020372 322 K 322 (327)
Q Consensus 322 ~ 322 (327)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 73
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.6e-13 Score=113.91 Aligned_cols=75 Identities=9% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.+++|||+||++.+|+++|+++|+.||.|.+|+|.++. +..|||||+|.++++|..|+. |+|..|.++.|.|.-.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 46899999999999999999999999999999999874 456899999999999999996 8999999999999753
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.50 E-value=4.4e-14 Score=110.71 Aligned_cols=80 Identities=21% Similarity=0.391 Sum_probs=76.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
...+|||+||+..++++-|+++|-+.|.|..+++.+|+.++..+|||||+|.++|+|+.|++.||...+-||+|+|..+-
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998765
No 75
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.49 E-value=3.1e-12 Score=114.78 Aligned_cols=73 Identities=14% Similarity=0.294 Sum_probs=64.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
+..+++++||+..++.+|.++|+..- ...|+|-..+ +|+.+|-|+|+|.|.++|..|+.. ++.-+..+-+.+-
T Consensus 281 g~fv~MRGlpy~a~~~di~nfFspl~-p~~v~i~ig~-dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElF 353 (510)
T KOG4211|consen 281 GHFVHMRGLPYDATENDIANFFSPLN-PYRVHIEIGP-DGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELF 353 (510)
T ss_pred CceeeecCCCccCCCcchhhhcCCCC-ceeEEEEeCC-CCccCCcceeecccchhhHhhhcc-CCcccCcceeeec
Confidence 38899999999999999999999885 4489999887 999999999999999999999996 7777777766554
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=3.6e-13 Score=95.64 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=71.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..+.|||+|||+++|.|+..++|.+||.|..|+|=..++ .+|.|||.|++..+|.+|++.|+|.-+.++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 467899999999999999999999999999999876554 68999999999999999999999999999999998755
Q ss_pred C
Q 020372 320 D 320 (327)
Q Consensus 320 ~ 320 (327)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 4
No 77
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=4.6e-13 Score=92.87 Aligned_cols=74 Identities=35% Similarity=0.693 Sum_probs=69.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
+|+|+|||..+++++|+++|+.||.|..+.+..++ .+.++|+|||+|.+.++|..|++.+++..++|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887 447899999999999999999999999999999999864
No 78
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=3.5e-13 Score=93.12 Aligned_cols=62 Identities=31% Similarity=0.704 Sum_probs=55.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 64 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~ 64 (327)
||+++|++||+++|+.||.|..|.+.++++|+++|+|||+|.+.++|.+|++.++|.. +.|+
T Consensus 6 lp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~-~~g~ 67 (70)
T PF14259_consen 6 LPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKE-IDGR 67 (70)
T ss_dssp STTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETTE
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcE-ECCE
Confidence 7999999999999999999999999999889999999999999999999999999855 5553
No 79
>smart00361 RRM_1 RNA recognition motif.
Probab=99.45 E-value=5.1e-13 Score=92.13 Aligned_cols=61 Identities=23% Similarity=0.483 Sum_probs=55.7
Q ss_pred HHHHHHHhh----ccCCeeEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 255 DQELGNAFQ----AFGRVLSAK-VFVDKAT--GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 255 ~~~L~~~F~----~~G~i~~v~-i~~~~~~--~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
+++|+++|+ .||.|.++. |..++.+ ++++|||||+|.+.++|.+|+..|||+.+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 899999999999999999999999999999999986
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.44 E-value=8.8e-14 Score=111.06 Aligned_cols=71 Identities=31% Similarity=0.540 Sum_probs=65.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
|-|.+|.++|+.+|++||.|-+|.|.+|+ ++.++|||||.|....||++|++.|+|.. ++|+ .|+|++|.=
T Consensus 21 LTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~-ldgR--elrVq~ary 92 (256)
T KOG4207|consen 21 LTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV-LDGR--ELRVQMARY 92 (256)
T ss_pred eeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee-eccc--eeeehhhhc
Confidence 56889999999999999999999999997 99999999999999999999999999965 7774 599998853
No 81
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.44 E-value=9.5e-12 Score=107.79 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=65.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCc-----
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK----- 311 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~----- 311 (327)
..++++|+..|.|..+|||.|.++|...+. ..+++|+..+ +-| ..-+.+||++.++|..||..+|+..|.+.
T Consensus 403 q~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-ser-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~P 480 (494)
T KOG1456|consen 403 QPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFP 480 (494)
T ss_pred cCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-ccc-cccceeeeehHHHHHHHHHHhccccccCCCCCCC
Confidence 457899999999999999999999988765 4567777765 444 34689999999999999999999999752
Q ss_pred -EEEEEEccCC
Q 020372 312 -KLKVQLKRDN 321 (327)
Q Consensus 312 -~l~v~~~~~~ 321 (327)
.|+++|+.++
T Consensus 481 filKlcfsts~ 491 (494)
T KOG1456|consen 481 FILKLCFSTSK 491 (494)
T ss_pred eeeeeeecccc
Confidence 4555555443
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.3e-13 Score=112.52 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=62.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
|+++++.|+|+++|++||+|++..|+.|+ +|||||||||+|.+.|+|++|++.-+ .|++|++ --|..|.-
T Consensus 20 L~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--piIdGR~--aNcnlA~l 90 (247)
T KOG0149|consen 20 LAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PIIDGRK--ANCNLASL 90 (247)
T ss_pred cccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Ccccccc--cccchhhh
Confidence 89999999999999999999999999997 99999999999999999999998777 5688854 66666643
No 83
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=7e-13 Score=116.56 Aligned_cols=79 Identities=35% Similarity=0.634 Sum_probs=76.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
.++|||+|||+.+++++|.++|..||.|.++.+..++.+++++|||||+|.+.++|..|+..++|..|.|++|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999999999999954
No 84
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.1e-12 Score=86.38 Aligned_cols=56 Identities=41% Similarity=0.641 Sum_probs=50.8
Q ss_pred HHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 258 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 258 L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
|.++|++||.|.++.+..++ +++|||+|.+.++|..|+..|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987643 689999999999999999999999999999999985
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.8e-13 Score=115.35 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=64.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+...|-||+.+|.+||+|.+|.|+-+.. -|||||||+|++++||++|-+.|||.. ++| |.|.|..|..+
T Consensus 104 IPFrFRdpDL~aMF~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~-VEG--RkIEVn~ATar 174 (376)
T KOG0125|consen 104 IPFRFRDPDLRAMFEKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTV-VEG--RKIEVNNATAR 174 (376)
T ss_pred CCccccCccHHHHHHhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcce-eec--eEEEEeccchh
Confidence 799999999999999999999999998743 489999999999999999999999986 667 45999999765
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=114.10 Aligned_cols=71 Identities=38% Similarity=0.688 Sum_probs=65.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||+++|+++|+++|..||.|.+|.+..|+ +|+++|||||+|.+.++|..|++.++|..+ .| +.|+|.++..
T Consensus 123 L~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~-~~--~~~~v~~~~~ 194 (306)
T COG0724 123 LPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL-EG--RPLRVQKAQP 194 (306)
T ss_pred CCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE-CC--ceeEeecccc
Confidence 78999999999999999999999999996 999999999999999999999999999764 44 6699999764
No 87
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=1.2e-12 Score=86.11 Aligned_cols=56 Identities=36% Similarity=0.711 Sum_probs=49.1
Q ss_pred HHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 11 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 11 L~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
|+++|++||+|+++.+.+++ +++|||+|.+.++|++|++.|||..+ .| ++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~-~g--~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQF-NG--RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEE-TT--EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEEEEEC
Confidence 78999999999999998874 58999999999999999999999874 55 56999986
No 88
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=6.9e-13 Score=104.15 Aligned_cols=79 Identities=23% Similarity=0.491 Sum_probs=71.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||.++-+.+|.++|.+||.|..|.+...+ .+..||||+|+++.+|+.||..-+|..++|++|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 46899999999999999999999999999999886532 356799999999999999999999999999999999987
Q ss_pred CC
Q 020372 320 DN 321 (327)
Q Consensus 320 ~~ 321 (327)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=1.6e-12 Score=89.70 Aligned_cols=61 Identities=20% Similarity=0.470 Sum_probs=51.9
Q ss_pred CHHHHHHHhc----ccCCeeEEE-EeeCC-C--CCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEE
Q 020372 7 SEAEVSALFS----IYGTIKDLQ-ILRGS-Q--QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 70 (327)
Q Consensus 7 te~dL~~~F~----~~G~i~~v~-~~~~~-~--g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 70 (327)
.++||+++|+ +||.|.+|. ++.++ + |+++|||||+|.+.++|.+|++.|||.. +.| |.|++
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~-~~g--r~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY-FDG--RTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEe
Confidence 3689999999 999999995 66664 5 8999999999999999999999999976 555 44665
No 90
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.8e-12 Score=109.48 Aligned_cols=69 Identities=16% Similarity=0.321 Sum_probs=61.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|+.||+|++|.|.+++. ++|||||+|.++++|+.|+ .|+|..+. | |.|+|.++...
T Consensus 12 Ls~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~Al-lLnG~~l~-g--r~V~Vt~a~~~ 80 (260)
T PLN03120 12 VSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETAL-LLSGATIV-D--QSVTITPAEDY 80 (260)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHH-HhcCCeeC-C--ceEEEEeccCC
Confidence 899999999999999999999999998863 5799999999999999999 59998754 4 66999998754
No 91
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=4.2e-14 Score=110.67 Aligned_cols=72 Identities=31% Similarity=0.564 Sum_probs=67.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|||++||.||.-+|++||.|++|.++||+ +|+|+||||.-|+++-+..-|+..|||..|.+ |+|+|......
T Consensus 43 l~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g---RtirVDHv~~Y 115 (219)
T KOG0126|consen 43 LPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG---RTIRVDHVSNY 115 (219)
T ss_pred CcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc---eeEEeeecccc
Confidence 89999999999999999999999999996 99999999999999999999999999998765 88999876543
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=3.1e-12 Score=87.77 Aligned_cols=66 Identities=45% Similarity=0.777 Sum_probs=59.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEE
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 70 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 70 (327)
||..+++++|+++|+.||.|..+.+..++ +++++|+|||+|.+.++|.+|++.+++..+ .| +.|+|
T Consensus 4 l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~-~~--~~~~v 70 (71)
T smart00360 4 LPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL-DG--RPLKV 70 (71)
T ss_pred CCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee-CC--cEEEe
Confidence 78999999999999999999999999986 689999999999999999999999998764 45 33655
No 93
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.2e-12 Score=108.71 Aligned_cols=70 Identities=30% Similarity=0.543 Sum_probs=63.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
|+|+++|.+|+..|++||+|+.|.|++|+ +|+++|||||+|+.+-+...|.+.-+|.+ ++|+. |.|.+-.
T Consensus 109 LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~-Idgrr--i~VDvER 179 (335)
T KOG0113|consen 109 LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK-IDGRR--ILVDVER 179 (335)
T ss_pred ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce-ecCcE--EEEEecc
Confidence 79999999999999999999999999997 99999999999999999999999999987 55644 6666554
No 94
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.35 E-value=8.9e-10 Score=102.65 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=69.1
Q ss_pred CCCc-eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 239 PPGA-NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 239 ~~~~-~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
.+++ +|-+.|+|++++.+||.+||..|-.+....+++..++|+++|.|.|.|++.++|.+|...|+++.|..|++.+.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 889999999999999999999997665544445556899999999999999999999999999999999998875
No 95
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.9e-12 Score=110.20 Aligned_cols=85 Identities=25% Similarity=0.489 Sum_probs=80.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..++..+|||+.|.+.+++|||.-+|+.||.|.+|.|++|..+|.+-.||||+|++.++++.|.-.|+..-|+.++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 020372 317 LKRDN 321 (327)
Q Consensus 317 ~~~~~ 321 (327)
|+.+-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 87643
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=87.26 Aligned_cols=77 Identities=29% Similarity=0.408 Sum_probs=66.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||+++|.|++.++|.+||.|..|+|--++ ..+|.|||.|++..||.+|+++|.|..+.+ |.|.|.+-...+....
T Consensus 26 Lp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~---ryl~vlyyq~~~~~~~ 100 (124)
T KOG0114|consen 26 LPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDN---RYLVVLYYQPEDAFKL 100 (124)
T ss_pred CCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCC---ceEEEEecCHHHHHHH
Confidence 89999999999999999999999986664 359999999999999999999999987544 7799999887665443
Q ss_pred HH
Q 020372 82 RR 83 (327)
Q Consensus 82 ~~ 83 (327)
..
T Consensus 101 ~~ 102 (124)
T KOG0114|consen 101 MD 102 (124)
T ss_pred HH
Confidence 33
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=8e-12 Score=103.89 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=61.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|++.+||+||+++|+.||+|.+|+|++| ++++|||||+|.++++|+.|+ .|+|..|.+ ++|.|......
T Consensus 13 LS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d---~~I~It~~~~y 81 (243)
T PLN03121 13 LSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVD---QRVCITRWGQY 81 (243)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCC---ceEEEEeCccc
Confidence 7899999999999999999999999998 556789999999999999999 899998766 56888887653
No 98
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=3.2e-12 Score=95.24 Aligned_cols=72 Identities=28% Similarity=0.503 Sum_probs=65.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
+..++||+||.+.|+.||+|+.+.+-.|+ +|-.||||+|+|++.++|++|++.|||..+++ .+|.|.|+-.+
T Consensus 80 vHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~---q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 80 VHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG---QNVSVDWCFVK 152 (170)
T ss_pred cCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC---CceeEEEEEec
Confidence 35678999999999999999999999995 99999999999999999999999999999876 56999998654
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=84.93 Aligned_cols=65 Identities=42% Similarity=0.727 Sum_probs=58.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEE
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 70 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 70 (327)
||..+++++|+++|+.||.|..+.+.++. +.++|+|||+|.+.++|++|++.++|..+ .| +.|+|
T Consensus 7 l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~-~~--~~i~v 71 (72)
T smart00362 7 LPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKL-GG--RPLRV 71 (72)
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEE-CC--EEEee
Confidence 78999999999999999999999999887 78899999999999999999999999764 44 34655
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=1.5e-11 Score=110.27 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=66.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCH--HHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETK--EQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~--e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
|++++|++||+.+|+.||.|.+|.|+|. +| ||||||+|.+. +++.+||+.|||..|.+ |.|+|..|++....
T Consensus 18 LSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKG---R~LKVNKAKP~YLe 91 (759)
T PLN03213 18 LGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG---GRLRLEKAKEHYLA 91 (759)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecC---ceeEEeeccHHHHH
Confidence 8899999999999999999999999955 55 99999999987 78999999999998554 56999999877654
Q ss_pred HHHHHH
Q 020372 80 QARRAQ 85 (327)
Q Consensus 80 ~~~~~~ 85 (327)
..++.+
T Consensus 92 RLkrER 97 (759)
T PLN03213 92 RLKREW 97 (759)
T ss_pred HHHHHH
Confidence 444333
No 101
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=8.9e-12 Score=104.69 Aligned_cols=74 Identities=31% Similarity=0.631 Sum_probs=70.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
..|||+|||..+++.+|+.+|++||+|.+|+|+++ |+||..++...|+.||..|||..|.|..|.|+-++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999975 9999999999999999999999999999999999888
Q ss_pred CC
Q 020372 322 KQ 323 (327)
Q Consensus 322 ~~ 323 (327)
+.
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 43
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.25 E-value=1.5e-11 Score=112.40 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=72.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
+||+++|++|.++|+..|.|.+++++.|+ +|++|||||++|.+.++|.+|++.|||..+.+ |.|+|.|+...+...
T Consensus 26 ip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g---r~l~v~~~~~~~~~~ 102 (435)
T KOG0108|consen 26 IPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG---RKLRVNYASNRKNAE 102 (435)
T ss_pred CCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC---ceEEeecccccchhH
Confidence 79999999999999999999999999997 99999999999999999999999999988554 779999998877665
Q ss_pred HHHH
Q 020372 81 ARRA 84 (327)
Q Consensus 81 ~~~~ 84 (327)
..+.
T Consensus 103 ~~~~ 106 (435)
T KOG0108|consen 103 RSLA 106 (435)
T ss_pred HHHh
Confidence 5543
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.24 E-value=2.9e-11 Score=98.62 Aligned_cols=80 Identities=24% Similarity=0.507 Sum_probs=73.4
Q ss_pred CCceEEEeCCCCCCCHHHHHH----HhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 240 PGANLFIYHIPQEFGDQELGN----AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~----~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
+..||||.||+..+..++|++ +|++||.|..|...+ +.+-||-|||.|.+.+.|-.|+..|+|..+-|+.|+|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 999999999887764 6779999999999999999999999999999999999
Q ss_pred EEccCCC
Q 020372 316 QLKRDNK 322 (327)
Q Consensus 316 ~~~~~~~ 322 (327)
.||+.+.
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9998764
No 104
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.7e-11 Score=95.69 Aligned_cols=68 Identities=26% Similarity=0.488 Sum_probs=61.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|+..+++.||+.+|..||+|.+|.|-++. .|||||+|+++-||++|+..|+|.. ++|. .|+|+++.-.
T Consensus 18 L~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~-~cG~--r~rVE~S~G~ 85 (195)
T KOG0107|consen 18 LGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKD-ICGS--RIRVELSTGR 85 (195)
T ss_pred CCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCcc-ccCc--eEEEEeecCC
Confidence 78999999999999999999999998864 6799999999999999999999987 5554 4999998765
No 105
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.9e-11 Score=90.44 Aligned_cols=70 Identities=26% Similarity=0.466 Sum_probs=63.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
|++.+||++|+++|+++|+|..|.+-.|+ +...=|||||+|-+.++|+.|++.++|+.+.+ |+|++.|.-
T Consensus 44 lSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd---r~ir~D~D~ 114 (153)
T KOG0121|consen 44 LSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD---RPIRIDWDA 114 (153)
T ss_pred eeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc---cceeeeccc
Confidence 67889999999999999999999999997 45567999999999999999999999987655 789999874
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=6.7e-11 Score=81.80 Aligned_cols=68 Identities=43% Similarity=0.782 Sum_probs=60.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEe
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 72 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 72 (327)
||..+++++|+++|+.||.|..+.+.++..++++|+|||+|.+.++|..|++.+++.. +.| +.+.|.+
T Consensus 7 l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~-~~~--~~~~v~~ 74 (74)
T cd00590 7 LPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE-LGG--RPLRVEF 74 (74)
T ss_pred CCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEeC
Confidence 7899999999999999999999999998877889999999999999999999999976 444 4476653
No 107
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.21 E-value=7.4e-12 Score=103.27 Aligned_cols=82 Identities=34% Similarity=0.492 Sum_probs=76.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
+.....+||++.|...++++.|-..|.+|-.....++++|+.+|+++||+||-|.+++++.+|+..|+|+.++.|.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred Ec
Q 020372 317 LK 318 (327)
Q Consensus 317 ~~ 318 (327)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 43
No 108
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.19 E-value=4.7e-11 Score=95.87 Aligned_cols=72 Identities=31% Similarity=0.450 Sum_probs=62.6
Q ss_pred CCcCCCHHHHHHHhccc-CCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIY-GTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~-G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
+|.-+-|.+|..+|+++ |.|..+++.|++ +|.|||||||+|+++|.|.-|-+.||++.+++ +.|.|.+--+.
T Consensus 57 ~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e---~lL~c~vmppe 130 (214)
T KOG4208|consen 57 IPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME---HLLECHVMPPE 130 (214)
T ss_pred cccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh---heeeeEEeCch
Confidence 56777899999999999 778899998995 99999999999999999999999999986554 56888887554
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=4.5e-11 Score=99.27 Aligned_cols=84 Identities=27% Similarity=0.452 Sum_probs=76.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCce-eC--CcEEEEE
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ-LG--GKKLKVQ 316 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~-i~--g~~l~v~ 316 (327)
+.+.|||+-|...-.|||++.+|.+||.|.+|.+.+.+ +|-++|+|||.|.+..+|+.||..|||.. +- ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999998 89999999999999999999999999883 43 4789999
Q ss_pred EccCCCCC
Q 020372 317 LKRDNKQN 324 (327)
Q Consensus 317 ~~~~~~~~ 324 (327)
|+...+++
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 98765543
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.8e-11 Score=98.84 Aligned_cols=75 Identities=32% Similarity=0.475 Sum_probs=67.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
|..++||.-|...|-+||+|.+|.+..|- +++.||||||+|+..|||..||..||+..+++ |+|+|.+|++.+..
T Consensus 18 ladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G---rtirVN~AkP~kik 93 (298)
T KOG0111|consen 18 LADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG---RTIRVNLAKPEKIK 93 (298)
T ss_pred chHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc---eeEEEeecCCcccc
Confidence 45678999999999999999999999995 89999999999999999999999999988554 78999999987643
No 111
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.09 E-value=4.5e-10 Score=90.30 Aligned_cols=83 Identities=30% Similarity=0.404 Sum_probs=75.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAF-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~-G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
......+++..+|..+.+..|..+|.+| |.|.++++.+++.||.++|||||+|++.+.|.-|.+.||++-|.++.|.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455789999999999999999999999 778888998999999999999999999999999999999999999999998
Q ss_pred EccC
Q 020372 317 LKRD 320 (327)
Q Consensus 317 ~~~~ 320 (327)
+-.+
T Consensus 126 vmpp 129 (214)
T KOG4208|consen 126 VMPP 129 (214)
T ss_pred EeCc
Confidence 7443
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.8e-10 Score=99.34 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=66.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
|.+-+|.+||.-+|+.||+|.+|.|++|. +|.|.-||||+|++.+++++|.-.|+++.|.+ |.|+|.|+..-.
T Consensus 247 LNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD---rRIHVDFSQSVs 320 (479)
T KOG0415|consen 247 LNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD---RRIHVDFSQSVS 320 (479)
T ss_pred cCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc---ceEEeehhhhhh
Confidence 55668899999999999999999999995 99999999999999999999999999988776 669999997643
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=1.4e-09 Score=100.28 Aligned_cols=81 Identities=33% Similarity=0.507 Sum_probs=76.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..+.+||++||..++++.++|+...||.+....++.+..+|-++||||.+|.+..-...|+..|||..+++++|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999998765
Q ss_pred C
Q 020372 320 D 320 (327)
Q Consensus 320 ~ 320 (327)
.
T Consensus 368 ~ 368 (500)
T KOG0120|consen 368 V 368 (500)
T ss_pred c
Confidence 4
No 114
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.01 E-value=3.3e-10 Score=99.35 Aligned_cols=83 Identities=25% Similarity=0.463 Sum_probs=76.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..+.|||++|++.+++|.|++.|++||+|..|.+++|+.+++++||+||+|++.+...+++.. .-..|+|+.|.++-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999998888875 6678899999998887
Q ss_pred CCCC
Q 020372 320 DNKQ 323 (327)
Q Consensus 320 ~~~~ 323 (327)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 7664
No 115
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.97 E-value=3e-09 Score=89.73 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=74.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
......|+|.||++.++++||+++|++||.++.+-+-.++ .|++.|.|-|.|...++|.+|++.+||..++|+.|++.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3345889999999999999999999999999988887776 899999999999999999999999999999999999987
Q ss_pred ccC
Q 020372 318 KRD 320 (327)
Q Consensus 318 ~~~ 320 (327)
..+
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 116
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.97 E-value=1.5e-09 Score=102.48 Aligned_cols=77 Identities=19% Similarity=0.385 Sum_probs=71.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
-++||||++|+..+++.||.++|+.||+|.+|.+.. +||+|||......+|.+|+.+|....+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 358999999999999999999999999999998765 57899999999999999999999999999999999988
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 664
No 117
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=3e-09 Score=91.84 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=68.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc-CceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN-GCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~-g~~i~g~~l~v~ 316 (327)
...-.+|||++|...+++.+|++.|.+||+|.++.++..+ ++|||+|.+.++|+.|...+- ...|+|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 4445799999999999999999999999999999998653 599999999999999887654 447799999999
Q ss_pred EccCC
Q 020372 317 LKRDN 321 (327)
Q Consensus 317 ~~~~~ 321 (327)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 118
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.94 E-value=8.8e-09 Score=94.18 Aligned_cols=84 Identities=25% Similarity=0.524 Sum_probs=77.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
..++.|+|.+|...+-.-||+++|++||.|+-.+|+.+-.+--.++|+||++++.++|.+||..||..++.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44689999999999999999999999999999999988767778899999999999999999999999999999999987
Q ss_pred cCCC
Q 020372 319 RDNK 322 (327)
Q Consensus 319 ~~~~ 322 (327)
+...
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7543
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.5e-10 Score=110.33 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=68.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
.++|+|+|+..|.++|+.+|..+|.+.+..++..+ .|+++|.++|.|.+..+|.+++...+...+.-+.+.|.+++
T Consensus 738 ~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 738 SVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 47899999999999999999999999999887776 89999999999999999999999988888877777777643
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.90 E-value=7e-09 Score=96.85 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=69.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
...+.+|||..||..+++.++.++|...-.|+. |.|...+ +++.++.|||+|.+++++..|..--+...++.|.|+|+
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 445789999999999999999999988777766 7888877 89999999999999999999988777788888999997
Q ss_pred E
Q 020372 317 L 317 (327)
Q Consensus 317 ~ 317 (327)
-
T Consensus 510 s 510 (944)
T KOG4307|consen 510 S 510 (944)
T ss_pred c
Confidence 3
No 121
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.90 E-value=1.8e-08 Score=72.95 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=71.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC----CcEEEE
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAF--GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG----GKKLKV 315 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~----g~~l~v 315 (327)
+||.|+|+|...+.++|.+++... |....++++.|..++-+.|||||.|.+++.|.+-.+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988654 66788999999888999999999999999999999999999885 577788
Q ss_pred EEccCC
Q 020372 316 QLKRDN 321 (327)
Q Consensus 316 ~~~~~~ 321 (327)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888754
No 122
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.87 E-value=1.4e-08 Score=92.54 Aligned_cols=81 Identities=35% Similarity=0.662 Sum_probs=69.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
...+|||+|||.+++.++|+++|..||.|+...|......++..+||||+|.+.++++.||.+ +-..+++++|.|+-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345599999999999999999999999999987776543455558999999999999999998 6778899999999766
Q ss_pred CC
Q 020372 320 DN 321 (327)
Q Consensus 320 ~~ 321 (327)
+.
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 53
No 123
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.5e-08 Score=90.59 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=59.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~ 302 (327)
+.+||||++||..++.++|..+|+ -||.|..+-|=.|++-+-++|-|-|+|++..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 468999999999999999999998 899999999999987899999999999999999999986
No 124
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.85 E-value=1.5e-08 Score=87.47 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=74.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 309 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~ 309 (327)
...+..|||.|||.++|.+++.++|+.||.|.+ |++.++. .|..+|-|.+.|--.++...|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344577999999999999999999999999865 8888886 7999999999999999999999999999999
Q ss_pred CcEEEEEEcc
Q 020372 310 GKKLKVQLKR 319 (327)
Q Consensus 310 g~~l~v~~~~ 319 (327)
|++|+|..|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999776
No 125
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.84 E-value=4.4e-08 Score=79.72 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=69.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCceeC---CcEEEEE
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIAMMNGCQLG---GKKLKVQ 316 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~G~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~ 316 (327)
-+||||.+||.++...+|.++|..|..-+.+.+...... ...+-+|||.|.+..+|++|+..|||..|+ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 489999999999999999999999977777766554322 223469999999999999999999999996 8999999
Q ss_pred EccCCC
Q 020372 317 LKRDNK 322 (327)
Q Consensus 317 ~~~~~~ 322 (327)
++|...
T Consensus 114 lAKSNt 119 (284)
T KOG1457|consen 114 LAKSNT 119 (284)
T ss_pred ehhcCc
Confidence 988654
No 126
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=2.2e-07 Score=85.29 Aligned_cols=57 Identities=26% Similarity=0.514 Sum_probs=51.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 62 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~ 62 (327)
||.++++++|+.+|+.||+|..|+.-+. .+|..||+|-+.-+|++|++.|++..|.+
T Consensus 83 l~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 83 LPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred cCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 7999999999999999999999776555 47799999999999999999999988654
No 127
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.83 E-value=4.2e-09 Score=92.13 Aligned_cols=81 Identities=20% Similarity=0.384 Sum_probs=74.7
Q ss_pred CceEE-EeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 241 GANLF-IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 241 ~~~l~-v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++| |.+|++.+++++|++.|..+|.|..+++..++.++...||++|.|.+...+..++.. ....+.++.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 999999999999999999999999999999999999999999999999999999998 8999999999999877
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
+..
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 653
No 128
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=4.4e-09 Score=96.24 Aligned_cols=72 Identities=19% Similarity=0.419 Sum_probs=65.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
.....+|+|.|||..+++++|+++|+.||+|..|+..+. .+|.+||+|-|..+|++|++.|++++|.|++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445689999999999999999999999999999766444 578999999999999999999999999999988
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.80 E-value=2.5e-08 Score=87.19 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=55.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhc---c-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQA---F-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 313 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~---~-G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l 313 (327)
-.|.+++||++.++.++.+||.+ . |....|-++..+ +|+++|.|||.|.++++|+.|+.+ |...|+-|-|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 46789999999999999999953 2 234556555555 899999999999999999999997 5555544433
No 130
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=2.4e-09 Score=86.71 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=74.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
...+||||.|+...+++|.|.|+|-+.|.|..|.|..++ +++.+ ||||.|.++-+...|+..+||..+.++.+.|.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 346899999999999999999999999999999999887 77777 9999999999999999999999999999999886
Q ss_pred cCCC
Q 020372 319 RDNK 322 (327)
Q Consensus 319 ~~~~ 322 (327)
....
T Consensus 85 ~G~s 88 (267)
T KOG4454|consen 85 CGNS 88 (267)
T ss_pred cCCC
Confidence 5543
No 131
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=7.5e-09 Score=83.88 Aligned_cols=59 Identities=27% Similarity=0.304 Sum_probs=53.6
Q ss_pred CcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 020372 3 PKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 62 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~ 62 (327)
-..+||+-|.++|-..|+|..|.|..+++++-| ||||.|+++-...-|++.+||..+..
T Consensus 18 ~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 18 YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhcc
Confidence 356899999999999999999999999988888 99999999999999999999976443
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=1.7e-08 Score=97.01 Aligned_cols=150 Identities=22% Similarity=0.326 Sum_probs=122.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
|+..+++.+|+..|..+|+|.+|.|-+-.-+...-||||.|.+...+-.|+..+.+..|..|. +++.+...+
T Consensus 380 l~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~---~r~glG~~k----- 451 (975)
T KOG0112|consen 380 LDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT---HRIGLGQPK----- 451 (975)
T ss_pred cccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc---ccccccccc-----
Confidence 678899999999999999999999977765666679999999999999999998887654432 222222110
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
T Consensus 452 -------------------------------------------------------------------------------- 451 (975)
T KOG0112|consen 452 -------------------------------------------------------------------------------- 451 (975)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
....
T Consensus 452 ----------------------------------------------------------------------------st~t 455 (975)
T KOG0112|consen 452 ----------------------------------------------------------------------------STPT 455 (975)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 1235
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEcc
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLKR 319 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~~ 319 (327)
+.+++++|...+....|...|..||.|..|.+-.. .-|++|.|++...|+.|+..|-|..|+| ++|+|.|+.
T Consensus 456 tr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 456 TRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred eeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 78999999999999999999999999998877432 3499999999999999999999999985 789999987
Q ss_pred CC
Q 020372 320 DN 321 (327)
Q Consensus 320 ~~ 321 (327)
+.
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 54
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.67 E-value=6.2e-08 Score=81.88 Aligned_cols=72 Identities=24% Similarity=0.466 Sum_probs=66.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+.++++||+++|..||.++.+.|..+.+|+|.|.|-|.|...+||++|++.++|+. ++|+ +|.+......
T Consensus 91 L~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~-ldG~--~mk~~~i~~~ 162 (243)
T KOG0533|consen 91 LPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA-LDGR--PMKIEIISSP 162 (243)
T ss_pred CCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc-cCCc--eeeeEEecCc
Confidence 8999999999999999999999999999999999999999999999999999999954 7774 4888877664
No 134
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.65 E-value=5.6e-08 Score=82.32 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=76.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+...+||+|+.+.++.+++...|+.||.|..+.|..|+.++.++||+||+|.+.+.++.|+. |+|..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4456799999999999999999999999999999999999888899999999999999999999 899999999999987
Q ss_pred ccCC
Q 020372 318 KRDN 321 (327)
Q Consensus 318 ~~~~ 321 (327)
.+.+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6644
No 135
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.59 E-value=1.7e-08 Score=88.45 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=58.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
.+|++|++|+..+-..++-+.|..+|+|...++.-.. ..-+|.++|....+...|+.. +|.++.-...++.+
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~-~gre~k~qhsr~ai 222 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRS-HGRERKRQHSRRAI 222 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHh-cchhhhhhhhhhhh
Confidence 3789999999999999999999999999998886543 345788999999999999995 88877644444433
No 136
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.57 E-value=1.1e-07 Score=90.07 Aligned_cols=67 Identities=28% Similarity=0.630 Sum_probs=60.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|+..++|.||.++|+.||.|++|+++.. +|+|||.+....||++|+++|.++.+.+ +.|+|.|+..+
T Consensus 429 i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~---k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 429 IPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVAD---KTIKIAWAVGK 495 (894)
T ss_pred ccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccc---eeeEEeeeccC
Confidence 7889999999999999999999999876 8899999999999999999999887655 67999999643
No 137
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=1.3e-07 Score=81.91 Aligned_cols=65 Identities=35% Similarity=0.614 Sum_probs=59.0
Q ss_pred cCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 4 ~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
..++|.||+++|.+||+|.++.++.. +|.|||+|.+.++|+.|.+..-++.+++|.. |.|.|...
T Consensus 238 d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R--l~i~Wg~~ 302 (377)
T KOG0153|consen 238 DEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFR--LKIKWGRP 302 (377)
T ss_pred cchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceE--EEEEeCCC
Confidence 47899999999999999999999886 6699999999999999999987788888854 99999988
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.55 E-value=8.1e-08 Score=79.72 Aligned_cols=69 Identities=19% Similarity=0.398 Sum_probs=59.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
|..+++.+-|-..|++|-.-...++++|+ +|+|+||+||.|.+++|+.+|+..|+|..+-. |+|...-+
T Consensus 198 lgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs---rpiklRkS 267 (290)
T KOG0226|consen 198 LGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS---RPIKLRKS 267 (290)
T ss_pred ccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc---chhHhhhh
Confidence 45578999999999999999999999996 99999999999999999999999999975432 66766544
No 139
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=1e-07 Score=78.77 Aligned_cols=72 Identities=26% Similarity=0.585 Sum_probs=66.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
..+||++||+.+.+.+|.+||..||.+..+.+. .||+||+|.+..+|..|+-.||++.|.|-++.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 468999999999999999999999999998875 458999999999999999999999999988999998853
No 140
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.48 E-value=2.5e-07 Score=84.90 Aligned_cols=72 Identities=19% Similarity=0.362 Sum_probs=61.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|...+.-.||+++|++||+|+..+|+.+. +---+.|+||++.+.++|.+||+.||.+.+ .| |.|.|..++..
T Consensus 413 LSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL-HG--rmISVEkaKNE 485 (940)
T KOG4661|consen 413 LSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL-HG--RMISVEKAKNE 485 (940)
T ss_pred cccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh-cc--eeeeeeecccC
Confidence 34456678999999999999999999994 556788999999999999999999999874 44 77999988754
No 141
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.40 E-value=5e-07 Score=78.93 Aligned_cols=85 Identities=27% Similarity=0.474 Sum_probs=77.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 309 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~ 309 (327)
.....+|||.+|+..+++++|.++|.++|.|+. |+|-++++|++++|-|.|.|.+.-.|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445679999999999999999999999999844 788889999999999999999999999999999999999
Q ss_pred CcEEEEEEccCCC
Q 020372 310 GKKLKVQLKRDNK 322 (327)
Q Consensus 310 g~~l~v~~~~~~~ 322 (327)
|..|+|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998876554
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.40 E-value=6.6e-07 Score=84.20 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=73.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK---ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~---~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
.+-.+.|||+||++.++++.|...|..||.|.+++|+--+ +..+.+-++||.|-+..+|++|++.|+|..+.++.|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4556889999999999999999999999999999887654 2356677899999999999999999999999999999
Q ss_pred EEEcc
Q 020372 315 VQLKR 319 (327)
Q Consensus 315 v~~~~ 319 (327)
+-|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99875
No 143
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.39 E-value=8.4e-07 Score=65.79 Aligned_cols=71 Identities=21% Similarity=0.431 Sum_probs=45.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc-----eeCCcEEEE
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC-----QLGGKKLKV 315 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~-----~i~g~~l~v 315 (327)
++.|+|.+++..++.++|++.|++||.|..|.+.... ..|+|.|.+.+.|+.|+..+... .+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 4689999999999999999999999999999987654 27999999999999999987644 556666655
Q ss_pred EE
Q 020372 316 QL 317 (327)
Q Consensus 316 ~~ 317 (327)
.+
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 53
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.38 E-value=1.7e-06 Score=59.63 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=47.1
Q ss_pred ceEEEeCCCCCCCHH----HHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 242 ANLFIYHIPQEFGDQ----ELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~----~L~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..|+|.|||.+.+.. .|+.++..+| .|.+| . .+.|.|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999988865 4556666775 46654 1 3589999999999999999999999999999999
Q ss_pred Ec
Q 020372 317 LK 318 (327)
Q Consensus 317 ~~ 318 (327)
|.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 87
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.35 E-value=8.3e-08 Score=84.97 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=61.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.+.|+|+|+...|+-|..+..+||.+..|..+.- .-.+-..-|+|.+.+.+..|+..|+|..+....+++.|-
T Consensus 82 k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 3568999999999999999999999999865432 223445678999999999999999999999998888873
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.17 E-value=1.2e-05 Score=58.21 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=62.0
Q ss_pred CCcCCCHHHHHHHhccc--CCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC-CcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIY--GTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEG-SSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~--G~i~~v~~~~~-~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g-~~~~l~v~~a~~~ 76 (327)
||...|.++|.+++... |...-+.+..| +++.+.|||||.|.++++|.+-.+.++|+.|..- ..+...|.+|..+
T Consensus 9 IPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 9 IPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred CCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 68999999999887544 67788899999 4889999999999999999999999999986422 2355788888665
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.10 E-value=4e-06 Score=71.15 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=61.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
+.+.+|-+++...|+.||.|..|.+..|+ .|++||||||+|.+.+.+++|++ |||..+.. +.+.|.+....
T Consensus 109 vd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~---~~i~vt~~r~~ 180 (231)
T KOG4209|consen 109 VDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG---PAIEVTLKRTN 180 (231)
T ss_pred cccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc---ccceeeeeeee
Confidence 45677888899999999999999999997 67899999999999999999998 99987554 56888877664
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.95 E-value=1.2e-05 Score=73.66 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=56.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||.++|+.+|+++|+.||.|+...|.... .+++..||||+|.+.+++..||++- ...+++ +.|.|.-.+.
T Consensus 296 lP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~ig~--~kl~Veek~~ 366 (419)
T KOG0116|consen 296 LPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLEIGG--RKLNVEEKRP 366 (419)
T ss_pred CCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--ccccCC--eeEEEEeccc
Confidence 89999999999999999999988875543 5666699999999999999999876 233444 4477775544
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.80 E-value=6.3e-07 Score=86.08 Aligned_cols=70 Identities=17% Similarity=0.411 Sum_probs=61.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 309 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~ 309 (327)
..+++||+||+..+.+++|...|..+|.+..+.+......++.||+|+|+|..++++.+|+....++.++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3478999999999999999999999999988877766668999999999999999999999975555444
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.80 E-value=5.4e-05 Score=56.15 Aligned_cols=51 Identities=25% Similarity=0.483 Sum_probs=34.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g 57 (327)
++..++.++|+++|+.||.|..|.+.+..+ -|||.|.++++|.+|++.+.-
T Consensus 9 ~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 9 LGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp --SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHh
Confidence 456788999999999999999999988754 799999999999999998653
No 151
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=3.7e-05 Score=70.97 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=53.0
Q ss_pred HHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 10 EVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 10 dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
-|.++|+++|+|..+.+..+..|.++||.|++|.+..+|..|++.|||+.+.... +..|..-
T Consensus 80 vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH--tf~v~~f 141 (698)
T KOG2314|consen 80 VLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH--TFFVRLF 141 (698)
T ss_pred HHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc--eEEeehh
Confidence 4668999999999999999987779999999999999999999999999865543 4665543
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.68 E-value=2.7e-05 Score=65.10 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=63.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC--------CCcc----eEEEEEeCCHHHHHHHHHHhcCce
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT--------GVSK----CFGFVSYESPASAQNAIAMMNGCQ 307 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~--------~~~~----G~afV~f~~~~~A~~A~~~l~g~~ 307 (327)
..-+||++++|+.+....|+++|+.||.|-+|++-+...+ |..+ .-|.|+|.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4579999999999999999999999999999999887644 2222 237899999999999999999999
Q ss_pred eCCcE
Q 020372 308 LGGKK 312 (327)
Q Consensus 308 i~g~~ 312 (327)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 153
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.67 E-value=0.00014 Score=61.93 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=60.9
Q ss_pred CCCceEEEeCCC--CCCC---HHHHHHHhhccCCeeEEEEEecCCCCCc-ceEEEEEeCCHHHHHHHHHHhcCceeCCcE
Q 020372 239 PPGANLFIYHIP--QEFG---DQELGNAFQAFGRVLSAKVFVDKATGVS-KCFGFVSYESPASAQNAIAMMNGCQLGGKK 312 (327)
Q Consensus 239 ~~~~~l~v~nLp--~~~t---~~~L~~~F~~~G~i~~v~i~~~~~~~~~-~G~afV~f~~~~~A~~A~~~l~g~~i~g~~ 312 (327)
.+..+|.++|.- ..++ ++++++.|++||.|..|.|...+..-.- -=-.||+|+..++|.+|+-.|||+.|+||.
T Consensus 279 ~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred cchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 344556666652 2343 4688999999999999988776522111 123799999999999999999999999999
Q ss_pred EEEEEcc
Q 020372 313 LKVQLKR 319 (327)
Q Consensus 313 l~v~~~~ 319 (327)
++..|.+
T Consensus 359 v~A~Fyn 365 (378)
T KOG1996|consen 359 VSACFYN 365 (378)
T ss_pred eeheecc
Confidence 9988754
No 154
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00025 Score=65.69 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=64.4
Q ss_pred CCceEEEeCCCCCCC--H----HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC-CcE
Q 020372 240 PGANLFIYHIPQEFG--D----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKK 312 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t--~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~-g~~ 312 (327)
-..+|+|-|.|---. . .-|..+|+++|+|....++.+. .|...||.|++|.+..+|+.|++.|||+.++ .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 357888999986432 2 3456789999999999999987 5669999999999999999999999999986 677
Q ss_pred EEEEE
Q 020372 313 LKVQL 317 (327)
Q Consensus 313 l~v~~ 317 (327)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77764
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.60 E-value=0.0062 Score=53.44 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=55.5
Q ss_pred CcCCCHHHHHHHhcccC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 3 PKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G--~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
-+-+|.+||.+....-| .+.++++..++ ||.|||||+|...+.....+-++.|-.+.| .|. .+....+-+..
T Consensus 89 ~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i-HGQ-~P~V~~~NK~~ 163 (498)
T KOG4849|consen 89 LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI-HGQ-SPTVLSYNKTN 163 (498)
T ss_pred eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee-cCC-CCeeeccchhh
Confidence 35678899999998888 57888999987 899999999999998888888887776654 444 34555555443
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.59 E-value=0.00018 Score=62.41 Aligned_cols=79 Identities=22% Similarity=0.418 Sum_probs=60.4
Q ss_pred CceEEEeCCCCCCCHHH----H--HHHhhccCCeeEEEEEecCCC-CCcceE--EEEEeCCHHHHHHHHHHhcCceeCCc
Q 020372 241 GANLFIYHIPQEFGDQE----L--GNAFQAFGRVLSAKVFVDKAT-GVSKCF--GFVSYESPASAQNAIAMMNGCQLGGK 311 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~----L--~~~F~~~G~i~~v~i~~~~~~-~~~~G~--afV~f~~~~~A~~A~~~l~g~~i~g~ 311 (327)
..-+||-+|++.+-.|+ | .++|.+||.|+.|.|-+.-.. +-..+. .|+.|.+.|+|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999876665 2 488999999998765433101 111122 49999999999999999999999999
Q ss_pred EEEEEEcc
Q 020372 312 KLKVQLKR 319 (327)
Q Consensus 312 ~l~v~~~~ 319 (327)
.|+..|..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998754
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.56 E-value=0.00024 Score=45.61 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=42.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~ 300 (327)
+.|-|.+.+.... +.+...|..||+|..+.+... .-..+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5678888887766 456668999999999888632 238999999999999985
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.50 E-value=0.00037 Score=58.50 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=58.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 306 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~ 306 (327)
..|+|.||..-++.|.|..-|+.||.|.+..+..|. .+++.+-++|+|...-.|..|+..+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccC
Confidence 369999999999999999999999999998888875 8999999999999999999999988533
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.49 E-value=0.00013 Score=65.38 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=59.4
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEec---CCC--CCc--------ceEEEEEeCCHHHHHHHHH
Q 020372 235 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD---KAT--GVS--------KCFGFVSYESPASAQNAIA 301 (327)
Q Consensus 235 ~~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~---~~~--~~~--------~G~afV~f~~~~~A~~A~~ 301 (327)
..+..++++|.+.|||.+-.-|.|.++|+.+|.|+.|+|... +++ +.+ +-+|+|+|.+.+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 445568899999999999888999999999999999998765 333 222 3358999999999999999
Q ss_pred HhcCc
Q 020372 302 MMNGC 306 (327)
Q Consensus 302 ~l~g~ 306 (327)
.|+-.
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 98633
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.48 E-value=0.00049 Score=50.29 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=50.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEE-EEecC------CCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcE-
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAK-VFVDK------ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK- 312 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~-i~~~~------~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~- 312 (327)
.+.|.|-+.|+.. ...|.+.|++||.|.+.. +.++. ..-......-|+|+++.+|.+||.. ||..++|.-
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 4668888999884 467889999999998764 11100 0001234789999999999999996 999998854
Q ss_pred EEEEEcc
Q 020372 313 LKVQLKR 319 (327)
Q Consensus 313 l~v~~~~ 319 (327)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466653
No 161
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.47 E-value=6e-05 Score=63.20 Aligned_cols=63 Identities=25% Similarity=0.444 Sum_probs=51.8
Q ss_pred HHHHHHhc-ccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 9 AEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 9 ~dL~~~F~-~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
+||...|+ +||.|+.+.|..+..-.-+|-+||.|...|+|++|++.|||. ++.| ++|+..+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnR-w~~G--~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNR-WYNG--RPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCc-cccC--CcceeeecC
Confidence 44555555 999999998877765577899999999999999999999995 5777 568888774
No 162
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.41 E-value=7.8e-05 Score=62.54 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=51.5
Q ss_pred HHHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 256 QELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 256 ~~L~~~F~-~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
|++...|+ +||+|+++.|-.+- .-.-.|-++|.|...++|++|+..||++++.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 56666676 99999998665432 2345788999999999999999999999999999998874
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.34 E-value=0.00042 Score=44.46 Aligned_cols=39 Identities=31% Similarity=0.550 Sum_probs=33.2
Q ss_pred HHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q 020372 9 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 52 (327)
Q Consensus 9 ~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai 52 (327)
++++..|..||+|.++.+-.+.+ ..||+|.+..+|++|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~~~~~~-----~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVPESTN-----WMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEcCCCCc-----EEEEEECCHHHHHhhC
Confidence 56778999999999988874333 9999999999999985
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.34 E-value=0.0017 Score=50.36 Aligned_cols=73 Identities=32% Similarity=0.574 Sum_probs=53.2
Q ss_pred CCCCceEEEeCCC-----C-CCCH---HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 020372 238 GPPGANLFIYHIP-----Q-EFGD---QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 308 (327)
Q Consensus 238 ~~~~~~l~v~nLp-----~-~~t~---~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i 308 (327)
+++.-||.|.=+. . ...+ .+|.+.|+.||++.-++++-+ .-+|+|.+-++|.+|+. ++|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 4556677676555 1 2222 378888999999998888754 46999999999999999 599999
Q ss_pred CCcEEEEEEcc
Q 020372 309 GGKKLKVQLKR 319 (327)
Q Consensus 309 ~g~~l~v~~~~ 319 (327)
+|+.|+|++..
T Consensus 95 ~g~~l~i~LKt 105 (146)
T PF08952_consen 95 NGRTLKIRLKT 105 (146)
T ss_dssp TTEEEEEEE--
T ss_pred CCEEEEEEeCC
Confidence 99999999754
No 165
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.28 E-value=0.0013 Score=62.68 Aligned_cols=71 Identities=21% Similarity=0.460 Sum_probs=59.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCC----CCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQ----QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~----g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
|++.++|+.|...|..||+|.+|+++--++ .+-+-+|||.|-+..||++|++.|+|..+.. +.+++.|++.
T Consensus 182 lnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~---~e~K~gWgk~ 256 (877)
T KOG0151|consen 182 LNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME---YEMKLGWGKA 256 (877)
T ss_pred CCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee---eeeeeccccc
Confidence 688999999999999999999999875432 2455699999999999999999999976554 5688888865
No 166
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.19 E-value=0.0029 Score=41.62 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=46.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcc---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAF---GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~---G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l 303 (327)
....|+|+++.. ++-++|+.+|..| ....+|..+-|. -|-|.|.+.+.|.+|+..|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 356899999976 5668899999999 235678888775 6999999999999999865
No 167
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.16 E-value=0.00024 Score=62.49 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=63.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 78 (327)
|++.+++++|+..|..+|.|..+++..+. +|.++|||||.|.+..++..++.. +...+.. +++++.+......
T Consensus 193 ~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 193 LDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG---RPLRLEEDEPRPK 266 (285)
T ss_pred cccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC---cccccccCCCCcc
Confidence 68899999999999999999999999886 899999999999999999999876 6655433 7799998877633
No 168
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.14 E-value=0.00058 Score=63.69 Aligned_cols=77 Identities=25% Similarity=0.295 Sum_probs=64.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee---CCcE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL---GGKK 312 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i---~g~~ 312 (327)
-+..+++|||.||-..+|.-.|++++. ..|.|... .+|+ -+..|||.|.+.++|...+.+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456789999999999999999999998 55667666 3343 345799999999999999999999977 6788
Q ss_pred EEEEEcc
Q 020372 313 LKVQLKR 319 (327)
Q Consensus 313 l~v~~~~ 319 (327)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888854
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.06 E-value=0.00053 Score=59.90 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGR--VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~--i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
...++||+||-+.+|++||.+.+...|. |..++++-++.+|.++|||+|...+..+....++.|--++|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3578999999999999999999987775 677788888888999999999999999999999999999998876555
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.06 E-value=0.00051 Score=60.44 Aligned_cols=72 Identities=31% Similarity=0.418 Sum_probs=62.7
Q ss_pred CCcCCCHHHHHHHhcccCCee--------EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEe
Q 020372 2 LPKNVSEAEVSALFSIYGTIK--------DLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 72 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~--------~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 72 (327)
||..+++++|.++|.++|.|. .|.|.+|+ +++.||-|.|.|++...|..||+.++++.+. + -+|+|.+
T Consensus 74 ~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~-g--n~ikvs~ 150 (351)
T KOG1995|consen 74 CPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC-G--NTIKVSL 150 (351)
T ss_pred cCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc-C--CCchhhh
Confidence 788999999999999999884 37788886 9999999999999999999999999998854 4 3488888
Q ss_pred CCCh
Q 020372 73 ADTE 76 (327)
Q Consensus 73 a~~~ 76 (327)
|..+
T Consensus 151 a~~r 154 (351)
T KOG1995|consen 151 AERR 154 (351)
T ss_pred hhhc
Confidence 7655
No 171
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.03 E-value=0.0025 Score=44.27 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=39.3
Q ss_pred CCcCCCHH----HHHHHhcccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEA----EVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~----dL~~~F~~~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||.+.+.. -|+.++.-+| +|.+|. .+.|.|.|.+++.|++|.+.|+|..+++ +.|.|.|....
T Consensus 10 LP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG---~kI~v~~~~~~ 77 (90)
T PF11608_consen 10 LPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFG---NKISVSFSPKN 77 (90)
T ss_dssp --TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSS---S--EEESS--S
T ss_pred CCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhccccccc---ceEEEEEcCCc
Confidence 44444443 4567777887 576652 3589999999999999999999988765 33999998544
Q ss_pred H
Q 020372 77 K 77 (327)
Q Consensus 77 ~ 77 (327)
.
T Consensus 78 r 78 (90)
T PF11608_consen 78 R 78 (90)
T ss_dssp -
T ss_pred c
Confidence 3
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.89 E-value=0.0029 Score=46.25 Aligned_cols=66 Identities=30% Similarity=0.383 Sum_probs=43.9
Q ss_pred CHHHHHHHhcccCCeeEEE-EeeCCC-------CCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 7 SEAEVSALFSIYGTIKDLQ-ILRGSQ-------QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~-~~~~~~-------g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
.-..+.+.|++||+|.+.. +.++.. -.....--|+|+++.+|.+|+ ..||.. +.|. ..+-|.++++
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i-~~g~-~mvGV~~~~~ 91 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTI-FSGS-LMVGVKPCDP 91 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEE-ETTC-EEEEEEE-HH
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeE-EcCc-EEEEEEEcHH
Confidence 3467889999999998775 111100 012348999999999999999 678864 5554 4577888743
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.84 E-value=0.0025 Score=55.52 Aligned_cols=62 Identities=24% Similarity=0.508 Sum_probs=48.6
Q ss_pred HHhcccCCeeEEEEeeCC--CCCcccEE--EEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 13 ALFSIYGTIKDLQILRGS--QQTSKGCA--FLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 13 ~~F~~~G~i~~v~~~~~~--~g~skG~a--fV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
++|.+||+|..|.|-+.- .+...+.+ ||.|.+.|||.+||...+|.. .+|+ -|+..|...+.
T Consensus 139 eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~-~DGr--~lkatYGTTKY 204 (480)
T COG5175 139 EYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL-LDGR--VLKATYGTTKY 204 (480)
T ss_pred hhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc-ccCc--eEeeecCchHH
Confidence 799999999988886652 22222334 999999999999999999975 7774 58998887654
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.48 E-value=0.008 Score=51.55 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=51.2
Q ss_pred HHHHHHHhcccCCeeEEEEeeCCCC--CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 8 EAEVSALFSIYGTIKDLQILRGSQQ--TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 8 e~dL~~~F~~~G~i~~v~~~~~~~g--~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|+++++-+.+||+|..|.|....+- .-.=--||+|+..++|.+|+=.|||.. ++| |.++..|....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy-FGG--r~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY-FGG--RVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce-ecc--eeeeheeccHH
Confidence 5678899999999999998776421 112258999999999999999999975 666 45777776543
No 175
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.097 Score=45.33 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=51.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcE-EEEE
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK-LKVQ 316 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~-l~v~ 316 (327)
...|-|.++++.-. .-|.++|++||.|....... .--+-.|.|.+.-+|++||.+ ||+.|+|-. |-|+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVk 265 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVK 265 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhh-cCeeeccceEEeee
Confidence 56667778887654 56888999999998754432 223889999999999999997 999998754 3344
No 176
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.39 E-value=0.006 Score=54.36 Aligned_cols=74 Identities=12% Similarity=0.206 Sum_probs=60.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT---GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
.+|.|.||.+.++.+.+..||.-.|.|..+.++....+ ......|||.|.+...+..|-. |....|=++.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 48999999999999999999999999999998875422 3345689999999999888877 56776666666654
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.37 E-value=0.02 Score=39.82 Aligned_cols=56 Identities=16% Similarity=0.349 Sum_probs=41.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 305 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g 305 (327)
..+.+|. .|..+...||.++|++||.|.- ..+.|- -|||...+.+.|..++..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEE-EEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3455565 9999999999999999998754 444442 799999999999999998753
No 178
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.35 E-value=0.0025 Score=57.23 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=60.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc-eeCCcEEEEEEccC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC-QLGGKKLKVQLKRD 320 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~-~i~g~~l~v~~~~~ 320 (327)
..+|++||.+.++..||..+|...-.--+=.++ ...||+||.+.+..-|.+|++.++|+ ++.|+++.+...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 358999999999999999999776211111122 24689999999999999999999988 78899999988766
Q ss_pred CCC
Q 020372 321 NKQ 323 (327)
Q Consensus 321 ~~~ 323 (327)
+++
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 543
No 179
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.017 Score=53.46 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=48.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecC-CC--CCcce---EEEEEeCCHHHHHHHHHHhc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-AT--GVSKC---FGFVSYESPASAQNAIAMMN 304 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-~~--~~~~G---~afV~f~~~~~A~~A~~~l~ 304 (327)
.-++.|||++||.+++|+.|...|..||.+.. ...... .. -.+.| |+|+.|+++.+.+.-+..+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 34588999999999999999999999998653 333211 11 12556 99999999888776666543
No 180
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.14 E-value=0.023 Score=55.58 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=61.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee--CCcEEEEEEccC
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--GGKKLKVQLKRD 320 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~v~~~~~ 320 (327)
...+.|..-..+--.|..+|++||.|++++.+++-+ .|.|+|.+.+.|..|+++|+|+++ -|-..+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445556666667788999999999999999988753 799999999999999999999976 488899999875
Q ss_pred C
Q 020372 321 N 321 (327)
Q Consensus 321 ~ 321 (327)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 4
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.07 E-value=0.027 Score=39.16 Aligned_cols=49 Identities=22% Similarity=0.492 Sum_probs=37.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g 57 (327)
.|.++...||.++|+.||.|. |.-+-|- -|||...+.+.|..|+..+.-
T Consensus 16 FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 16 FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHTT
T ss_pred CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhcc
Confidence 377888999999999999994 4444442 799999999999999988863
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.02 E-value=0.098 Score=39.00 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=50.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 310 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g 310 (327)
..+.+...|..++.++|..+.+.+-. |..++|++|. ...+-.+.++|.+.++|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34445555556677788877777644 6678888864 3366779999999999999999999998864
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.95 E-value=0.041 Score=42.31 Aligned_cols=73 Identities=15% Similarity=0.308 Sum_probs=54.7
Q ss_pred CCCCceEEEeCCCCCCC-HHHH---HHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 020372 238 GPPGANLFIYHIPQEFG-DQEL---GNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 313 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t-~~~L---~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l 313 (327)
.++-.||.|+=|..++. .||| ...++.||.|.+|.... +.-|.|.|.+..+|..|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 44567888888877663 3444 45578999999997743 23699999999999999999776 4566677
Q ss_pred EEEEc
Q 020372 314 KVQLK 318 (327)
Q Consensus 314 ~v~~~ 318 (327)
...|.
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 76653
No 184
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.70 E-value=0.024 Score=48.94 Aligned_cols=62 Identities=24% Similarity=0.298 Sum_probs=49.1
Q ss_pred HHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 10 EVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 10 dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
-|..+|++||.|++.....+-| +-.|.|.+..+|++|| ..||. |++|. ..|-|..+..+...
T Consensus 212 ~vL~~F~~cG~Vvkhv~~~ngN-----wMhirYssr~~A~KAL-skng~-ii~g~-vmiGVkpCtDksvi 273 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVKHVTPSNGN-----WMHIRYSSRTHAQKAL-SKNGT-IIDGD-VMIGVKPCTDKSVI 273 (350)
T ss_pred HHHHHHHhhCeeeeeecCCCCc-----eEEEEecchhHHHHhh-hhcCe-eeccc-eEEeeeecCCHHHh
Confidence 4678999999999877664334 9999999999999999 67885 56665 57888888776543
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.70 E-value=0.038 Score=42.97 Aligned_cols=57 Identities=21% Similarity=0.440 Sum_probs=43.6
Q ss_pred HHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 9 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 9 ~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
++|.+.|+.||.+.-|+++-+ .-.|+|.+-+.|-+|+ .|+|..+ .| +.|+|....+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v-~g--~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQV-NG--RTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEE-TT--EEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEE-CC--EEEEEEeCCcc
Confidence 367789999999888887766 6999999999999998 7899885 44 56888876553
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.68 E-value=0.14 Score=38.22 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=46.8
Q ss_pred CcCCCHHHHHHHhcccCC-eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC
Q 020372 3 PKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 63 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G~-i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g 63 (327)
|+-++-++|..+.+.+-. |..++|++|... ++--++++|.+.++|.+..+.+||+.+-.-
T Consensus 22 ~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 22 PYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred cccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 555666777777777754 678889988532 577899999999999999999999976433
No 187
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.67 E-value=0.0095 Score=53.77 Aligned_cols=56 Identities=34% Similarity=0.520 Sum_probs=45.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeC---C-C--CC--------cccEEEEEeCCHHHHHHHHHHhcC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRG---S-Q--QT--------SKGCAFLKYETKEQALAALEAING 57 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~---~-~--g~--------skG~afV~F~~~e~A~~Ai~~l~g 57 (327)
||.+=.-+.|.++|+.+|.|..|+|++- . + |. .+-+|+|+|+..+.|++|.+.|+.
T Consensus 239 LP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 239 LPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred CCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 5666666899999999999999999876 2 2 22 256799999999999999999864
No 188
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.57 E-value=0.023 Score=54.15 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=63.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
.++..++||+|+...+..+=++.+...+|.|.++.... |+|..|.....+.+|+..++-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34568999999999999999999999999999876543 999999999999999999999999998887765
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.49 E-value=0.025 Score=52.75 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=59.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhc--cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc--eeCCcEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC--QLGGKKLK 314 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~--~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~ 314 (327)
...|.|.++-+|.++.+|+++-||.. +-.+++|.+..+. -=||+|++..||+.|.+.|... +|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 35688899999999999999999965 6678888887653 2499999999999999998754 77888776
Q ss_pred EEE
Q 020372 315 VQL 317 (327)
Q Consensus 315 v~~ 317 (327)
.++
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 554
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.36 E-value=0.027 Score=45.93 Aligned_cols=69 Identities=10% Similarity=0.201 Sum_probs=45.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhc-cCCe---eEEEEEecC-CC-CCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQA-FGRV---LSAKVFVDK-AT-GVSKCFGFVSYESPASAQNAIAMMNGCQL 308 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~-~G~i---~~v~i~~~~-~~-~~~~G~afV~f~~~~~A~~A~~~l~g~~i 308 (327)
....|.|++||+.+|++++++.+++ ++.- ..+.-..+. .. ......|+|.|.+.+++..-+..++|+.|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4568999999999999999987776 6655 223211221 11 11335699999999999999999999877
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.33 E-value=0.06 Score=44.15 Aligned_cols=61 Identities=26% Similarity=0.339 Sum_probs=46.1
Q ss_pred CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CceeCCcEEEEEEccC
Q 020372 254 GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKVQLKRD 320 (327)
Q Consensus 254 t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~~~~ 320 (327)
..+.|+++|..|+.+....+++.- +-..|.|.+.++|.+|...|+ +..+.|..+++-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999999888777642 358999999999999999999 9999999999998753
No 192
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.31 E-value=0.0039 Score=61.13 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=68.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
...+++||++||+..+++.+|+-.|..+|.|.+|.|..-+ -+...-|+||.|.+.+.+-.|+..+.+..|..-.+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3456899999999999999999999999999999987764 455566999999999999999999999988755555555
Q ss_pred c
Q 020372 318 K 318 (327)
Q Consensus 318 ~ 318 (327)
.
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 4
No 193
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.17 E-value=0.012 Score=55.28 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=55.1
Q ss_pred CCCHHHHHHHhcccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 5 NVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 5 ~~te~dL~~~F~~~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
-.|.-+|+.++.+-| .|++..|-+= |-.|||.|.+.++|.+-+..|||+.|..+..+.|.+.|....
T Consensus 455 PFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 455 PFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred cchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 468899999998555 4666644322 448999999999999999999999999998888999999664
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.13 E-value=0.0085 Score=52.61 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=60.0
Q ss_pred ceEEEeCCCCCCCHHHH---HHHhhccCCeeEEEEEecC----CCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 242 ANLFIYHIPQEFGDQEL---GNAFQAFGRVLSAKVFVDK----ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L---~~~F~~~G~i~~v~i~~~~----~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
.-+||-+|+..+-.+++ .+.|.+||.|..|.+..+. ..+-.. -++|+|...++|.+||...+|..++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 45778888887655544 3679999999999887765 112222 289999999999999999999999999988
Q ss_pred EEEccC
Q 020372 315 VQLKRD 320 (327)
Q Consensus 315 v~~~~~ 320 (327)
..+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 776443
No 195
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.09 E-value=0.017 Score=48.71 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=51.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-C--------CCccc----EEEEEeCCHHHHHHHHHHhcCCccCCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-Q--------QTSKG----CAFLKYETKEQALAALEAINGKHKMEGS 64 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~--------g~skG----~afV~F~~~e~A~~Ai~~l~g~~~~~g~ 64 (327)
||+.++...|+++|+.||.|-+|.|-... . |.+++ =|.|+|.+...|.++.+.|||..|-+.+
T Consensus 82 IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 82 IPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred CCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 79999999999999999999999997654 3 33332 3679999999999999999998754443
No 196
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.93 E-value=0.11 Score=34.86 Aligned_cols=55 Identities=7% Similarity=0.238 Sum_probs=44.7
Q ss_pred CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 252 EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 252 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
.++-++++..+..|+ .. +|..|+ +|| ||.|.+.++|+++....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~--~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WD--RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cc--eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467799999999995 33 455554 333 99999999999999999999998888765
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.80 E-value=0.065 Score=43.93 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=44.6
Q ss_pred CHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CCccCCCCcccEEEEeCCCh
Q 020372 7 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN--GKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~--g~~~~~g~~~~l~v~~a~~~ 76 (327)
..+.|+++|..|+.+.....++. .+-..|.|.+.++|.+|...|+ +..+ .| ..++|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~-~g--~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSF-NG--KRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEE-TT--EE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhccccccc-CC--CceEEEEcccc
Confidence 46789999999999998888886 5579999999999999999999 7664 44 34899888543
No 198
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.77 E-value=0.23 Score=48.93 Aligned_cols=66 Identities=29% Similarity=0.439 Sum_probs=55.8
Q ss_pred CCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 5 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 5 ~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
..+-.-|-.+|++||.|.+.+.+|+-+ .|.|+|.+.|.|..|.+.|+|+....- +-|.+|.+|+.-
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAKTL 374 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEecccc
Confidence 456667889999999999999999966 899999999999999999999865322 256899999764
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.32 E-value=0.18 Score=33.74 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=40.8
Q ss_pred cCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 020372 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 62 (327)
Q Consensus 4 ~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~ 62 (327)
..++-+||+..++.|+-. +|..|++| -||.|.+.++|++|....+|..++.
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEE
Confidence 467889999999999543 34455543 6999999999999999999987654
No 200
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.01 E-value=0.21 Score=32.95 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=37.0
Q ss_pred CCCHHHHHHHhccc---CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 020372 5 NVSEAEVSALFSIY---GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 55 (327)
Q Consensus 5 ~~te~dL~~~F~~~---G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l 55 (327)
+++.+||+.+|..| .....|.-+-|. -|=|.|.+.+.|.+|+..|
T Consensus 15 ~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 15 ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 57889999999999 124477777775 4899999999999999764
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.86 E-value=0.051 Score=49.89 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=62.7
Q ss_pred CCCCceEEEeCCCCCC-CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQEF-GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~-t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
....+.|-+.-.++.. +.++|...|.+||.|..|.|-.. .--|.|+|.+..+|-.|-.. ++..|++|-|+|.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLF 441 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhcc-ccceecCceeEEE
Confidence 3455677777778764 67899999999999999877543 22689999999999888874 9999999999999
Q ss_pred EccC
Q 020372 317 LKRD 320 (327)
Q Consensus 317 ~~~~ 320 (327)
|-++
T Consensus 442 whnp 445 (526)
T KOG2135|consen 442 WHNP 445 (526)
T ss_pred EecC
Confidence 9776
No 202
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.84 E-value=0.052 Score=45.89 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
|...++.|.|.+-|+.||+|....++.|..++..|-++|.|.+.-.|.+|+..+.
T Consensus 39 l~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 39 LMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred cchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 4567888999999999999999999999889999999999999999999999873
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.01 E-value=0.32 Score=33.42 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=35.8
Q ss_pred CCCHHHHHHHhhccCCe-----eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 252 EFGDQELGNAFQAFGRV-----LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 252 ~~t~~~L~~~F~~~G~i-----~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.++..+|..++...+.| -.++|..+ |+||+-.. +.|..++..|++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 57888999998877554 44666532 89999875 4789999999999999999999864
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.97 E-value=0.5 Score=43.40 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=58.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 310 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g 310 (327)
+..|+|-.+|-.++-.||..|+..+-. |..++|++|. --.+-.+.+.|.+.++|..--..+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 789999999999999999999987744 7888999864 2234458999999999999999999998864
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.17 E-value=0.094 Score=46.23 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=51.0
Q ss_pred CHHHHH--HHhcccCCeeEEEEeeCCC-----CCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 7 SEAEVS--ALFSIYGTIKDLQILRGSQ-----QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 7 te~dL~--~~F~~~G~i~~v~~~~~~~-----g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
.|..|+ +.|.+||.|..|.+.++.. +-+ --++|+|...|+|..||...+|. +++|+ .++..+..++...
T Consensus 91 de~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~-~~dg~--~lka~~gttkycs 166 (327)
T KOG2068|consen 91 DESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGF-VDDGR--ALKASLGTTKYCS 166 (327)
T ss_pred chhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhH-Hhhhh--hhHHhhCCCcchh
Confidence 344444 6899999999999888641 111 13899999999999999999996 47774 4777777665543
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.94 E-value=0.55 Score=43.12 Aligned_cols=60 Identities=18% Similarity=0.343 Sum_probs=50.7
Q ss_pred CCcCCCHHHHHHHhcccCC-eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 020372 2 LPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 62 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~-i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~ 62 (327)
+|..+|-.||..|+..+=+ |.+++++||..+ ++-..+|.|.+.++|....+.+||+.|-.
T Consensus 82 VP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 82 VPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred ccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5889999999999987764 889999997532 35579999999999999999999997643
No 207
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.15 E-value=0.23 Score=40.53 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=48.5
Q ss_pred CCcCCCHHHHHHHhcc-cCCe---eEEEEeeC--CCC-CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCc--ccEEEEe
Q 020372 2 LPKNVSEAEVSALFSI-YGTI---KDLQILRG--SQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSS--VPLVVKW 72 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~-~G~i---~~v~~~~~--~~g-~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~--~~l~v~~ 72 (327)
||+.+||+++.+.++. ++.- ..+.-... ... ..-.-|||.|.+.+++..-+..++|..|.+-+. .+..|.+
T Consensus 15 LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~ 94 (176)
T PF03467_consen 15 LPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEF 94 (176)
T ss_dssp E-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE
T ss_pred CCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEE
Confidence 8999999999998887 7765 34442222 222 123569999999999999999999987766543 3456777
Q ss_pred CCCh
Q 020372 73 ADTE 76 (327)
Q Consensus 73 a~~~ 76 (327)
|--+
T Consensus 95 Apyq 98 (176)
T PF03467_consen 95 APYQ 98 (176)
T ss_dssp -SS-
T ss_pred cchh
Confidence 7543
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.79 E-value=1.2 Score=42.27 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=62.4
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhcc----CCeeEEEEEecCCCCC-------------------------------
Q 020372 238 GPPGANLFIYHIPQE-FGDQELGNAFQAF----GRVLSAKVFVDKATGV------------------------------- 281 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~-~t~~~L~~~F~~~----G~i~~v~i~~~~~~~~------------------------------- 281 (327)
....++|=|+|+.++ +..+||.-+|..| |.|.+|.|.+.. .|+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-FGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-FGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-hhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 446789999999995 8899999888766 589999887653 332
Q ss_pred -----------------cceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 282 -----------------SKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 282 -----------------~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..-||.|+|.+++.|...-..++|.+|...-..+.+
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 124799999999999999999999999765555543
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.68 E-value=1.4 Score=30.20 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=35.2
Q ss_pred CCCHHHHHHHhcccCC-----eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 5 NVSEAEVSALFSIYGT-----IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 5 ~~te~dL~~~F~~~G~-----i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
.++..+|..++...+. |-+|++..+ |.||+-.. +.|.++++.|++..+ .| +.++|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~-~g--k~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKI-KG--KKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--S-SS------EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCC-CC--eeEEEEEC
Confidence 4678888888877754 456777666 99999887 589999999999874 45 55888764
No 210
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.78 E-value=1.4 Score=34.14 Aligned_cols=53 Identities=17% Similarity=0.370 Sum_probs=41.9
Q ss_pred HHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 12 SALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 12 ~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
....+.||+|++|.+.-. --|.|.|.+..+|=+|+.+++.. ..| ..+++.|-.
T Consensus 108 ~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s~--~pg--tm~qCsWqq 160 (166)
T PF15023_consen 108 IQRLSVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQSR--APG--TMFQCSWQQ 160 (166)
T ss_pred HHHHHhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcCC--CCC--ceEEeeccc
Confidence 345689999999988653 36999999999999999999874 333 458887764
No 211
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=88.53 E-value=0.44 Score=38.30 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=57.2
Q ss_pred CceEEEeCCCCCCC-----HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCc-EEE
Q 020372 241 GANLFIYHIPQEFG-----DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KLK 314 (327)
Q Consensus 241 ~~~l~v~nLp~~~t-----~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~-~l~ 314 (327)
..++.++++...+- ...-.++|.+|.+.....+++. .++.-|.|.+.+.|.+|...+++..|.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 45678888887542 2455678888877776666654 34678999999999999999999999998 777
Q ss_pred EEEccCC
Q 020372 315 VQLKRDN 321 (327)
Q Consensus 315 v~~~~~~ 321 (327)
.-++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7776643
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.45 E-value=0.38 Score=34.17 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHh
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAF 262 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F 262 (327)
...++|.|.|||...++|+|++..
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 346899999999999999998764
No 213
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.33 E-value=0.78 Score=43.29 Aligned_cols=57 Identities=16% Similarity=0.302 Sum_probs=45.1
Q ss_pred CCcCCCHHHHHHHhcc--cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CccCCCC
Q 020372 2 LPKNVSEAEVSALFSI--YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING-KHKMEGS 64 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~--~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g-~~~~~g~ 64 (327)
||...-+|+++.+|+. +.++.+|.+-.+.+ =||+|++.+||+.|.+.|.. ++-+.|+
T Consensus 183 Ipettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 183 IPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred cCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 6778889999999976 67899999877653 79999999999999987642 2334453
No 214
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.99 E-value=0.28 Score=45.26 Aligned_cols=61 Identities=21% Similarity=0.386 Sum_probs=48.1
Q ss_pred CHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 7 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|-.+|...|.+||.|..|.+-.... .|.|+|.+.-+|-+|. +.++.. +++ |.|+|.|-.+.
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~-----~a~vTF~t~aeag~a~-~s~~av-lnn--r~iKl~whnps 446 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSL-----HAVVTFKTRAEAGEAY-ASHGAV-LNN--RFIKLFWHNPS 446 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchh-----hheeeeeccccccchh-ccccce-ecC--ceeEEEEecCC
Confidence 4578999999999999999866533 7999999999998876 445544 444 67999988764
No 215
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.04 E-value=0.42 Score=41.01 Aligned_cols=81 Identities=21% Similarity=0.418 Sum_probs=49.8
Q ss_pred CCceEEEeCCCCCC------------CHHHHHHHhhccCCeeEEEEEe-cC----CCCCcceEE--------------EE
Q 020372 240 PGANLFIYHIPQEF------------GDQELGNAFQAFGRVLSAKVFV-DK----ATGVSKCFG--------------FV 288 (327)
Q Consensus 240 ~~~~l~v~nLp~~~------------t~~~L~~~F~~~G~i~~v~i~~-~~----~~~~~~G~a--------------fV 288 (327)
.+.||++.+||..| +++.|+..|+.||.|..|.|+. |+ -+|+..|+- ||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 35678888887543 4678999999999999987754 22 235544432 34
Q ss_pred EeCCHHHHHHHHHHhcCcee----CCc----EEEEEEccC
Q 020372 289 SYESPASAQNAIAMMNGCQL----GGK----KLKVQLKRD 320 (327)
Q Consensus 289 ~f~~~~~A~~A~~~l~g~~i----~g~----~l~v~~~~~ 320 (327)
+|..-..-..|+..|.|..+ +|+ .++|.|.++
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 44444445556666666643 232 455555544
No 216
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=83.83 E-value=3.1 Score=29.33 Aligned_cols=52 Identities=8% Similarity=0.203 Sum_probs=39.7
Q ss_pred CCcCCCHHHHHHHhcc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 020372 2 LPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 55 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~-~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l 55 (327)
.+.+++..+|++.++. || +|.+|..+.-+.| .-=|||.+...++|.+....+
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 4578899999998877 56 5888888776543 235999999999998876543
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=79.67 E-value=36 Score=29.75 Aligned_cols=49 Identities=6% Similarity=0.092 Sum_probs=37.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCe-eEEEEEecCCCCCcceEEEEEeCCHH
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRV-LSAKVFVDKATGVSKCFGFVSYESPA 294 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~G~afV~f~~~~ 294 (327)
...-|+++||+.++--.||+..+.+-+.+ .++.+. . ++|-||+.|.|..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-g-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-G-----HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee-c-----CCcceeEecCCcc
Confidence 34559999999999999999999988775 334332 1 4678999997653
No 218
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=78.33 E-value=7.6 Score=26.88 Aligned_cols=52 Identities=8% Similarity=0.204 Sum_probs=38.7
Q ss_pred CCcCCCHHHHHHHhcc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 020372 2 LPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 55 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~-~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l 55 (327)
.+.++|..+|++.++. || +|.+|..+.-+.+ .-=|||.+...++|.+.-..+
T Consensus 21 V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 21 VDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 4678899999988876 56 5788887666533 225999999998888876543
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.29 E-value=6.4 Score=31.87 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=47.5
Q ss_pred HHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 8 EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 8 e~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
..+..++|..|-+....++++. .++.-|.|.+++.|.+|..++++..+..+. -+..-++...
T Consensus 29 k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~--~~k~yfaQ~~ 90 (193)
T KOG4019|consen 29 KALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTSFNGKN--ELKLYFAQPG 90 (193)
T ss_pred HHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcccCCCc--eEEEEEccCC
Confidence 3455678888877776666664 678999999999999999999998755442 3777777665
No 220
>PRK11901 hypothetical protein; Reviewed
Probab=65.00 E-value=27 Score=31.18 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEE--EEEeCCHHHHHHHHHHhcC
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFG--FVSYESPASAQNAIAMMNG 305 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~a--fV~f~~~~~A~~A~~~l~g 305 (327)
....++|-|-.+ ..+++|..|..+++ +..++|.....+|+.. |. +-.|.+.++|.+|+..|-.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 445677777654 45788888888875 5556777666677777 43 4469999999999998764
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.40 E-value=18 Score=27.27 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=30.6
Q ss_pred ceEEEeCCCCC---------CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHH-HHHHHH
Q 020372 242 ANLFIYHIPQE---------FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS-AQNAIA 301 (327)
Q Consensus 242 ~~l~v~nLp~~---------~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~-A~~A~~ 301 (327)
.++.|-|++.. ++.++|++.|+.|..++ ++.+-++ .-.+|++.|+|...-. -..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 46677777543 35689999999998765 5555553 3568999999976543 334443
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.69 E-value=18 Score=33.07 Aligned_cols=55 Identities=25% Similarity=0.417 Sum_probs=45.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCe-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRV-LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~ 302 (327)
.++|-|-++|...-.+||...|+.|+.- -.|+++-|. .||-.|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4788899999988889999999999662 335555554 799999999999999986
No 223
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=63.40 E-value=18 Score=24.37 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=43.7
Q ss_pred HHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 256 QELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 256 ~~L~~~F~~~G~-i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
++|++-|...|- |..++-+..+.++.+.-.-||+.+...+ ..+.++=+.+.+.+++|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCC
Confidence 567777777765 7788877777677788888999887655 3334455677888877776443
No 224
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=60.58 E-value=15 Score=32.20 Aligned_cols=82 Identities=11% Similarity=0.128 Sum_probs=58.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecC-------CCCCcceEEEEEeCCHHHHHHH----HHHhc--
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-------ATGVSKCFGFVSYESPASAQNA----IAMMN-- 304 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-------~~~~~~G~afV~f~~~~~A~~A----~~~l~-- 304 (327)
....+.|.+.|+...++-.++..-|.+||.|++|+++.+. +.-.......+-|-+.+.+..- ++.|.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999875 1122334678889887764332 22222
Q ss_pred CceeCCcEEEEEEcc
Q 020372 305 GCQLGGKKLKVQLKR 319 (327)
Q Consensus 305 g~~i~g~~l~v~~~~ 319 (327)
...+....|.+.|..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 225667778877643
No 225
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.77 E-value=1.5 Score=41.37 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 310 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g 310 (327)
-..|+||++|+.+.++-.+|.++|..+..+.++-+..+....+-..+.+|.|+---.-.-|+.+||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 346899999999999999999999999777776554332222233468899977767777777777776543
No 226
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=57.74 E-value=25 Score=27.52 Aligned_cols=50 Identities=10% Similarity=0.232 Sum_probs=36.3
Q ss_pred CCcCCCHHHHHHHhcc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 020372 2 LPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 53 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~-~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~ 53 (327)
++..++..+|++.++. |+ +|..|..+....|.- =|||.+....+|.+...
T Consensus 89 Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 89 VDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred EcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHHH
Confidence 4567889999988876 66 477888776655432 49999988887765543
No 227
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.02 E-value=24 Score=23.20 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=15.4
Q ss_pred HHHHHHhcccCCeeEEEE
Q 020372 9 AEVSALFSIYGTIKDLQI 26 (327)
Q Consensus 9 ~dL~~~F~~~G~i~~v~~ 26 (327)
.+||++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999976655
No 228
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=56.84 E-value=29 Score=30.47 Aligned_cols=49 Identities=12% Similarity=0.326 Sum_probs=37.8
Q ss_pred CcCCCHHHHHHHhcccCCeeEEEEeeCC--------CCCcccEEEEEeCCHHHHHHH
Q 020372 3 PKNVSEAEVSALFSIYGTIKDLQILRGS--------QQTSKGCAFLKYETKEQALAA 51 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G~i~~v~~~~~~--------~g~skG~afV~F~~~e~A~~A 51 (327)
..+++-..+..-|-+||+|++|.++.+. +.+...-..+.|-+.+.|-.-
T Consensus 24 ~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 24 NNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred cccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 3456667778889999999999998875 223446789999999987643
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.67 E-value=10 Score=28.59 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=25.5
Q ss_pred CCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHH
Q 020372 6 VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQ 47 (327)
Q Consensus 6 ~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~ 47 (327)
++.++|++.|+.|..+ +|+.+.+..| ..|++.|+|.+.-.
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~g-h~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQG-HTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETTE-EEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCCC-CcEEEEEEECCChH
Confidence 4567899999999887 4677676553 57899999998543
No 230
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=54.38 E-value=47 Score=22.45 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=32.0
Q ss_pred HHHHHHhcccCC-eeEEEEeeCCCCCcccEEEEEeC-CHHHHHHHHHHhcC
Q 020372 9 AEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYE-TKEQALAALEAING 57 (327)
Q Consensus 9 ~dL~~~F~~~G~-i~~v~~~~~~~g~skG~afV~F~-~~e~A~~Ai~~l~g 57 (327)
-++.+.|+.+|- +..+.-...+.....-+-||+++ ..++..+|++.|..
T Consensus 15 ~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 15 ARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 356788888874 55554433334344457788888 55667788888875
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.69 E-value=34 Score=22.51 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHHHHhhccCCeeEEEEEec
Q 020372 256 QELGNAFQAFGRVLSAKVFVD 276 (327)
Q Consensus 256 ~~L~~~F~~~G~i~~v~i~~~ 276 (327)
.+|+++|+..|.|.-+.+-..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 689999999999987766443
No 232
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=51.31 E-value=18 Score=32.43 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.6
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 38 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 38 afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
|||+|++..+|..|++.+..... +.+++..|-++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeCCCcc
Confidence 79999999999999998765431 336787775544
No 233
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=50.19 E-value=85 Score=22.11 Aligned_cols=57 Identities=9% Similarity=0.188 Sum_probs=40.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-cCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 020372 244 LFIYHIPQEFGDQELGNAFQA-FGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303 (327)
Q Consensus 244 l~v~nLp~~~t~~~L~~~F~~-~G~-i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l 303 (327)
-|..-.+...+..+|++.++. ||. |.+|..+.-+ . ..--|+|.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 444457889999999988876 454 6777666654 2 2346999999988888776543
No 234
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=48.28 E-value=73 Score=21.31 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHHHhcccC-CeeEEEEeeCCCCCcccEEEEEeCC---HHHHHHHHHHhcC
Q 020372 9 AEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYET---KEQALAALEAING 57 (327)
Q Consensus 9 ~dL~~~F~~~G-~i~~v~~~~~~~g~skG~afV~F~~---~e~A~~Ai~~l~g 57 (327)
.++.+.|+.+| .|.++.-...+.....-.-||+++. .+..+++++.|..
T Consensus 14 ~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 14 AKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 46778999997 4777744433333445678899984 5666777777764
No 235
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.22 E-value=39 Score=22.78 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=40.9
Q ss_pred HHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 256 QELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 256 ~~L~~~F~~~G~-i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
+.|++-|.+.|- +..++.+..+.++.+.-.=||+.....+-.. .|+=+.++|+++.|+-
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr 61 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVER 61 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEec
Confidence 457788888876 7788888877556677777888876543222 4555677888877764
No 236
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=48.05 E-value=13 Score=21.49 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=10.0
Q ss_pred CCCHHHHHHHhcccCC
Q 020372 5 NVSEAEVSALFSIYGT 20 (327)
Q Consensus 5 ~~te~dL~~~F~~~G~ 20 (327)
++++++|+++|.+.++
T Consensus 20 Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIKK 35 (36)
T ss_dssp ---HHHHHHHHHCS--
T ss_pred cCCHHHHHHHHHHhcc
Confidence 6789999999987653
No 237
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=47.91 E-value=91 Score=21.54 Aligned_cols=56 Identities=9% Similarity=0.174 Sum_probs=39.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-cCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020372 244 LFIYHIPQEFGDQELGNAFQA-FGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302 (327)
Q Consensus 244 l~v~nLp~~~t~~~L~~~F~~-~G~-i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~ 302 (327)
-|+...+...+..+|++.++. ||. |..|....-+ . ..--|||.+...+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHh
Confidence 455567899999999988876 453 6666655544 2 233599999988888776554
No 238
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=47.19 E-value=13 Score=29.10 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=29.7
Q ss_pred CceEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEe
Q 020372 241 GANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFV 275 (327)
Q Consensus 241 ~~~l~v~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~ 275 (327)
..-|.|.|||.. .+++.|+.+.+.+|.+..++...
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 356889999987 78899999999999999987653
No 239
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=46.92 E-value=44 Score=27.12 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=36.7
Q ss_pred CCHHHHHHHhccc-CCeeEEEEeeCCCC--CcccEEEEEeCCHHHHHHHHHHhc
Q 020372 6 VSEAEVSALFSIY-GTIKDLQILRGSQQ--TSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 6 ~te~dL~~~F~~~-G~i~~v~~~~~~~g--~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
.|+++|.++-.-. |++..|..-+..++ .-+|--||+|.+.+.|..+++.-.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 4566666544222 68887777665555 678999999999999999887654
No 240
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.91 E-value=37 Score=32.71 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=23.0
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCcc
Q 020372 36 GCAFLKYETKEQALAALEAINGKHK 60 (327)
Q Consensus 36 G~afV~F~~~e~A~~Ai~~l~g~~~ 60 (327)
-||.|+|++.+.|.+..+.++|..+
T Consensus 269 YyAVvecDsi~tA~~vYe~CDG~Ef 293 (650)
T KOG2318|consen 269 YYAVVECDSIETAKAVYEECDGIEF 293 (650)
T ss_pred EEEEEEecCchHHHHHHHhcCccee
Confidence 4899999999999999999999864
No 241
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=43.18 E-value=96 Score=28.66 Aligned_cols=76 Identities=18% Similarity=0.373 Sum_probs=54.8
Q ss_pred CCCCCCceEEEeCCCCC-CCHHHHHHHhhcc----CCeeEEEEEecCCCCCc----------------------------
Q 020372 236 IEGPPGANLFIYHIPQE-FGDQELGNAFQAF----GRVLSAKVFVDKATGVS---------------------------- 282 (327)
Q Consensus 236 ~~~~~~~~l~v~nLp~~-~t~~~L~~~F~~~----G~i~~v~i~~~~~~~~~---------------------------- 282 (327)
+...+..+|-|-||.++ +...+|.-.|+.| |.|..|.|.+.. .|+.
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse-fGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE-FGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh-hhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 34556788999999985 7888998888765 557767665432 2221
Q ss_pred --------------------------------------ceEEEEEeCCHHHHHHHHHHhcCceeCCcE
Q 020372 283 --------------------------------------KCFGFVSYESPASAQNAIAMMNGCQLGGKK 312 (327)
Q Consensus 283 --------------------------------------~G~afV~f~~~~~A~~A~~~l~g~~i~g~~ 312 (327)
.-||.|++.+.+.+......++|.++....
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~sa 287 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSA 287 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccccc
Confidence 236889999999998888888888876543
No 242
>PRK11901 hypothetical protein; Reviewed
Probab=42.91 E-value=38 Score=30.29 Aligned_cols=50 Identities=8% Similarity=0.170 Sum_probs=37.1
Q ss_pred CCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEE--EeCCHHHHHHHHHHhcC
Q 020372 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFL--KYETKEQALAALEAING 57 (327)
Q Consensus 6 ~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV--~F~~~e~A~~Ai~~l~g 57 (327)
-+++.|..|-++++ +..+++.+.. +|+.- |..| .|.+.++|..|++.|--
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 46788888888885 5667777764 66543 4444 69999999999998754
No 243
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=41.90 E-value=41 Score=23.56 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=24.2
Q ss_pred CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 020372 20 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58 (327)
Q Consensus 20 ~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~ 58 (327)
.|.++....+ -+||-||+=.+++++.+|++.+.+.
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccce
Confidence 4555555444 5899999999999999998776653
No 244
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=41.32 E-value=1.1e+02 Score=20.84 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHHHHHhcccC-CeeEEEEeeCCCCCcccEEEEEeCC---HHHHHHHHHHhcC
Q 020372 9 AEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYET---KEQALAALEAING 57 (327)
Q Consensus 9 ~dL~~~F~~~G-~i~~v~~~~~~~g~skG~afV~F~~---~e~A~~Ai~~l~g 57 (327)
.++.++|+++| .|.++......++...=.-||+++- .++..++++.|..
T Consensus 16 ~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 16 YDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 45778899997 4777765544443333466777773 5677788887775
No 245
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.59 E-value=14 Score=33.73 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=48.5
Q ss_pred CceEEEeCCCCCCC--------HHHHHHHhhc--cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020372 241 GANLFIYHIPQEFG--------DQELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 301 (327)
Q Consensus 241 ~~~l~v~nLp~~~t--------~~~L~~~F~~--~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~ 301 (327)
-+.+|+.+.+...+ .+++...|.. .+.+..+...++.+....+|-.|++|...+.|++...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 35677777765443 3599999999 6778888888887677889999999999999999873
No 246
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=37.42 E-value=97 Score=23.27 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhccc----CCeeEEEEeeCC--CCCcccEEEEEeCCHHHHH
Q 020372 5 NVSEAEVSALFSIY----GTIKDLQILRGS--QQTSKGCAFLKYETKEQAL 49 (327)
Q Consensus 5 ~~te~dL~~~F~~~----G~i~~v~~~~~~--~g~skG~afV~F~~~e~A~ 49 (327)
.++.+||++-.++. -++..|.=.+.. .|++.|||.| |++.|.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 56777887644433 233344445554 5789999987 56655543
No 247
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.15 E-value=1.2e+02 Score=21.54 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=30.2
Q ss_pred HHHHHHhcccCC-eeEEEEeeCCCCCcccEEEEEeCC--HHHHHHHHHHhcC
Q 020372 9 AEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYET--KEQALAALEAING 57 (327)
Q Consensus 9 ~dL~~~F~~~G~-i~~v~~~~~~~g~skG~afV~F~~--~e~A~~Ai~~l~g 57 (327)
-++.+.|+.+|. +..+.-...+.....-+-||+++- .+...+|++.|..
T Consensus 29 ~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 29 AKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred HHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 356788999984 555544333333334477888884 4455677777654
No 248
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=36.62 E-value=1.2e+02 Score=29.18 Aligned_cols=63 Identities=17% Similarity=0.073 Sum_probs=42.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhh----ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQ----AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 304 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~ 304 (327)
+..+.++.-....+..+|..+|. .+|.|.++.+...+ .-..+...++.|.+.++|..++..+.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p-~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLP-KPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEc-CCcceEEEEEECCCHHHHHHHHHHHH
Confidence 34444432222233457777775 68889998777765 23345677899999999999998764
No 249
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=36.42 E-value=95 Score=25.76 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=30.8
Q ss_pred CHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 020372 7 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g 57 (327)
+.++.+++...++.-. +.| +.+|...|-+.+...+.++|.+|++.+-.
T Consensus 25 ~~~~A~~~l~~~~~p~-~Vi--KadGla~GKGV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVI--KADGLAAGKGVVIADDREEALEALREIFV 72 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEE--EESSSCTTTSEEEESSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCc-eEE--ccCCCCCCCEEEEeCCHHHHHHHHHHhcc
Confidence 4566667777665432 222 23455555566777999999999988643
No 250
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.41 E-value=35 Score=28.94 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=29.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA 271 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v 271 (327)
....+++|+-|+|...+++.|.++.++.|.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 4457899999999999999999999999976554
No 251
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=35.32 E-value=46 Score=27.01 Aligned_cols=61 Identities=10% Similarity=-0.040 Sum_probs=39.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhcCce
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATG--VSKCFGFVSYESPASAQNAIAMMNGCQ 307 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~--~~~G~afV~f~~~~~A~~A~~~l~g~~ 307 (327)
.+++|.+ +.+...++|..+-+ |.+..+.+.... .+ .-+|-.||.|.+.++|...++. +...
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~ 173 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT-HEEK 173 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh-hhhh
Confidence 4566666 33333445555544 788887666543 23 4568899999999999988775 4433
No 252
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=33.27 E-value=14 Score=33.15 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 020372 6 VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58 (327)
Q Consensus 6 ~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~ 58 (327)
++...+.++..++|.|..-.+.+.-| -|.+||-.-.+|+++++++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rtFN---mGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRTFN---MGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHHhc---CccceEEEEcHHHHHHHHHHHHhc
Confidence 34578888999999888777776654 789999999999999999999874
No 253
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.77 E-value=6.2 Score=36.41 Aligned_cols=78 Identities=5% Similarity=-0.126 Sum_probs=61.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
..-|+..++..++++++.=+|..||.|..+...+....+...=.+||.-.+ ++|..+|.-+....+.|.++++.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 455778889999999999999999999988887776566666678888764 467778877777778888888877653
No 254
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.39 E-value=1.5e+02 Score=19.21 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=31.4
Q ss_pred HHHHHHhcccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 9 AEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 9 ~dL~~~F~~~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
.+|-++|+.+| .|.++.......+ ..+...+.++..++.+++++.|.
T Consensus 16 ~~l~~~l~~~~i~i~~~~~~~~~~~-~~~~~~i~v~~~~~~~~~~~~L~ 63 (69)
T cd04909 16 AEVTQILGDAGISIKNIEILEIREG-IGGILRISFKTQEDRERAKEILK 63 (69)
T ss_pred HHHHHHHHHcCCCceeeEeEEeecC-CcEEEEEEECCHHHHHHHHHHHH
Confidence 46778888888 4777765554222 34566788877777777777664
No 255
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=31.38 E-value=88 Score=30.19 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=42.6
Q ss_pred HHHHHHhc----ccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 9 AEVSALFS----IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 9 ~dL~~~F~----~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
-||..+|. .+|.|+++.+-..+.-..+...++.|.+.++|.+|+..+....+ .+..+.+-+..
T Consensus 204 ~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~-----~p~~~el~d~~ 270 (499)
T PRK11230 204 FDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGI-----IPGGLEMMDNL 270 (499)
T ss_pred cchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhcCC-----CcEEEEeeCHH
Confidence 36667665 67888888876554444566889999999999999988653222 23455555443
No 256
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=30.86 E-value=16 Score=32.79 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=40.5
Q ss_pred CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 020372 253 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 306 (327)
Q Consensus 253 ~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~ 306 (327)
++...|.++..+.|.|..-.+.+-- +.|.+||..-..+++.++++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 3357888999999988776555433 6789999999999999999999875
No 257
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=29.88 E-value=1.4e+02 Score=18.42 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=30.2
Q ss_pred HHHHHHhcccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q 020372 9 AEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 52 (327)
Q Consensus 9 ~dL~~~F~~~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai 52 (327)
.++.+++.+.| .|.++.+.... ..++..-+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR--GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc--CCcEEEEEEECCHHHHHHHh
Confidence 35667777777 58788766553 34678888889988887775
No 258
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.47 E-value=53 Score=30.02 Aligned_cols=64 Identities=9% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCcCCCHHHHHHHhcccCC-eeEEEEeeCCCC---CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCc
Q 020372 2 LPKNVSEAEVSALFSIYGT-IKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSS 65 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~-i~~v~~~~~~~g---~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~ 65 (327)
||..+|+++|.+-...+-. |.-..+.+...+ .-.+.|||.|..+++...-...++|..+++.+.
T Consensus 15 lpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 15 LPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred CCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 7899999999988887653 333334322211 235789999999999888888888887776654
No 259
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.25 E-value=1.8e+02 Score=19.60 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=31.3
Q ss_pred HHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 9 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 9 ~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
+++.+....+| +..+.+.-.- .-++.|+-+++.++++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG---~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG---GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS---SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC---CCCeEEEEECCHHHHHHHHHHHH
Confidence 46677788888 5555554321 14588888999999999988774
No 260
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.11 E-value=1.6e+02 Score=23.10 Aligned_cols=45 Identities=11% Similarity=0.247 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 020372 249 IPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 303 (327)
Q Consensus 249 Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l 303 (327)
|+..+.+|.|.++++-.|.|.+.. -.| -...|.+.+...+|++.+
T Consensus 119 L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 119 LREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred cCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 889999999999999999998765 222 367799999999999875
No 261
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=28.21 E-value=1.4e+02 Score=23.53 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=27.0
Q ss_pred eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 020372 21 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58 (327)
Q Consensus 21 i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~ 58 (327)
|.+|.+... ..||-||+.+..+++..++..+.+.
T Consensus 36 i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 666666554 5899999999889999999877764
No 262
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=28.01 E-value=1.3e+02 Score=21.64 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=36.2
Q ss_pred CCcCCCHHHHHHHhcc-------cC-CeeEEEEe------eCCCCCccc-EEEEEeCCHHHHHHHHHHhc
Q 020372 2 LPKNVSEAEVSALFSI-------YG-TIKDLQIL------RGSQQTSKG-CAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~-------~G-~i~~v~~~------~~~~g~skG-~afV~F~~~e~A~~Ai~~l~ 56 (327)
|.++++++++..+..+ .| .|..+.-. ..-++..+| |.++.|.-..++.+.++..-
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~l 83 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKAL 83 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHh
Confidence 5677788877766544 44 56655531 111345667 79999998888888887743
No 263
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=27.62 E-value=85 Score=28.73 Aligned_cols=68 Identities=9% Similarity=0.211 Sum_probs=47.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEEecC--CCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDK--ATGVSKCFGFVSYESPASAQNAIAMMNGCQL 308 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~--~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i 308 (327)
.+.+.|++||...++++|.+-..++-. +.+..+.... ....-.+.++|.|.+.++...-...++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467789999999999998888777633 3333333211 0112357899999999998888888888865
No 264
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=27.57 E-value=2e+02 Score=20.99 Aligned_cols=45 Identities=31% Similarity=0.409 Sum_probs=25.6
Q ss_pred CCCHHHHHH-HhcccCCeeEEEEeeC-C----CCCcccEEEEEeCCHHHHHH
Q 020372 5 NVSEAEVSA-LFSIYGTIKDLQILRG-S----QQTSKGCAFLKYETKEQALA 50 (327)
Q Consensus 5 ~~te~dL~~-~F~~~G~i~~v~~~~~-~----~g~skG~afV~F~~~e~A~~ 50 (327)
+.+..||++ +-+.|+.=.+..++.. + -|++.|||.| |++.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 456777775 4455664333333333 2 2578888877 666655543
No 265
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=25.20 E-value=31 Score=25.75 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=31.9
Q ss_pred CcCCCHHHHHHHhcc---cCCeeEEEEeeCC--CCCcccEEEEEeCCHH
Q 020372 3 PKNVSEAEVSALFSI---YGTIKDLQILRGS--QQTSKGCAFLKYETKE 46 (327)
Q Consensus 3 p~~~te~dL~~~F~~---~G~i~~v~~~~~~--~g~skG~afV~F~~~e 46 (327)
||.+|-.+|+++|+. |-.|++-.+.+|- .| +-..||..|....
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~~ 130 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNATQ 130 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccch
Confidence 789999999999975 5556666677772 44 4458999998763
No 266
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=24.84 E-value=26 Score=23.42 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=26.2
Q ss_pred HHHHHHhcccCCeeEE-EEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 020372 9 AEVSALFSIYGTIKDL-QILRGSQQTSKGCAFLKYETKEQALAALEAI 55 (327)
Q Consensus 9 ~dL~~~F~~~G~i~~v-~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l 55 (327)
++|.+.|..+.+...+ ++ .+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHHh
Confidence 5777777666554322 22 6899999999998887665
No 267
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=24.84 E-value=1.4e+02 Score=21.02 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=28.5
Q ss_pred CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 20 TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 20 ~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
+|++|++.+-. +|+-+|||=|.|++ ++ ..+|..+.+|.. -+-|.+-
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd------~f-~I~~ikVieg~~-GlFVaMP 48 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD------CF-VIHDIKVIEGEK-GLFVAMP 48 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT------TE-EEEEEEEEEETT-EEEEE--
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC------EE-EEEeEEEEECCC-CcEEECC
Confidence 47788886664 58999999999988 11 345555555542 2444443
No 268
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=24.75 E-value=14 Score=23.83 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=18.7
Q ss_pred cceEEEEEeCC-HHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 282 SKCFGFVSYES-PASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 282 ~~G~afV~f~~-~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
+.|||||...+ .++.--.-..|++. ++|=++.|.+...
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~~ 45 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITPP 45 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEES
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEecC
Confidence 57899999987 22211122333333 3555666666553
No 269
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=24.25 E-value=1.1e+02 Score=22.10 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=19.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCC
Q 020372 36 GCAFLKYETKEQALAALEAINGK 58 (327)
Q Consensus 36 G~afV~F~~~e~A~~Ai~~l~g~ 58 (327)
||-||+++..++...++..+.|.
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCCc
Confidence 99999999877778888887774
No 270
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=24.21 E-value=1.4e+02 Score=27.98 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=35.3
Q ss_pred HHHHHhcc----cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 10 EVSALFSI----YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 10 dL~~~F~~----~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
||..+|.- +|.|+++.+-.-+--..+...++.|.+.++|.+|+..+.
T Consensus 148 dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 148 DLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred ChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 56777743 778888887655444456678899999999999987654
No 271
>PRK10905 cell division protein DamX; Validated
Probab=23.89 E-value=1.4e+02 Score=26.70 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=35.8
Q ss_pred CCCHHHHHHHhcccCCeeEEEEeeC-CCCCcc-cEEEEEeCCHHHHHHHHHHhcC
Q 020372 5 NVSEAEVSALFSIYGTIKDLQILRG-SQQTSK-GCAFLKYETKEQALAALEAING 57 (327)
Q Consensus 5 ~~te~dL~~~F~~~G~i~~v~~~~~-~~g~sk-G~afV~F~~~e~A~~Ai~~l~g 57 (327)
-.+++.|++|-.++| +....+... ++|+.. -.-+=.|.+.++|++|++.|--
T Consensus 255 ~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 255 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred cCCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 457888999999885 343344444 466533 2334479999999999998753
No 272
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=23.73 E-value=2.4e+02 Score=26.42 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=36.7
Q ss_pred CCHHHHHHHhhc----cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020372 253 FGDQELGNAFQA----FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 304 (327)
Q Consensus 253 ~t~~~L~~~F~~----~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~ 304 (327)
....+|..+|.. +|.|.++.+...+ .-..+...++.|.+.++|.+|+..+.
T Consensus 144 ~~g~dl~~l~~Gs~GtlGiit~~~lkl~p-~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 144 VAGYDLTGLFVGSEGTLGIVTEATLKLLP-KPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCCCChhhhcccCCccceEEEEEEEEeec-CCCccEEEEEECCCHHHHHHHHHHHH
Confidence 334567777753 7889998777765 23345577889999999999986554
No 273
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=69 Score=30.72 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=29.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 35 KGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 35 kG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
..++++.|++++++.+|+..++|..+. + ..+++..+...
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k-~--~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYK-G--FILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhh-c--chhhhhhcccc
Confidence 359999999999999999999997533 2 33555555443
No 274
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.43 E-value=2.7e+02 Score=20.79 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=28.9
Q ss_pred HHHHHhcccCC-eeEEEEeeCCCCCcccEEEEEeC-CHHHHHHHHHHhcC
Q 020372 10 EVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYE-TKEQALAALEAING 57 (327)
Q Consensus 10 dL~~~F~~~G~-i~~v~~~~~~~g~skG~afV~F~-~~e~A~~Ai~~l~g 57 (327)
++.+.|+.+|. +..+.-...++....-.-||+++ +.++..+|++.|..
T Consensus 57 ~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~ 106 (115)
T cd04930 57 RILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQ 106 (115)
T ss_pred HHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHH
Confidence 56678888874 44444333333333346677776 44566778887764
No 275
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.26 E-value=97 Score=20.50 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=24.4
Q ss_pred CCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEE
Q 020372 6 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFL 40 (327)
Q Consensus 6 ~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV 40 (327)
.-|.+|.+.|-+-..|+++.|+-++ -+ +|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 3467888999999999999887764 43 455555
No 276
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.71 E-value=79 Score=18.24 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=15.4
Q ss_pred CCCHHHHHHHhhccCCee
Q 020372 252 EFGDQELGNAFQAFGRVL 269 (327)
Q Consensus 252 ~~t~~~L~~~F~~~G~i~ 269 (327)
+++.++|++.+..+|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578999999999998654
No 277
>PRK10905 cell division protein DamX; Validated
Probab=22.58 E-value=2e+02 Score=25.84 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=42.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcce-EEEEEeCCHHHHHHHHHHhcC
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKC-FGFVSYESPASAQNAIAMMNG 305 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G-~afV~f~~~~~A~~A~~~l~g 305 (327)
....++|.|..+. +++.|.+|-.++| +....+.....+|+.+- .-+-.|.+.++|.+|+..|-.
T Consensus 244 pa~~YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 244 PSSHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCCceEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 3445777776544 5688888888885 44444544444666552 234468999999999998753
No 278
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=21.84 E-value=2.4e+02 Score=21.73 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCCHHHHHHHh-cccC-CeeEEEEe---eCC--CCCcccEEEEEeCCHHHHH
Q 020372 5 NVSEAEVSALF-SIYG-TIKDLQIL---RGS--QQTSKGCAFLKYETKEQAL 49 (327)
Q Consensus 5 ~~te~dL~~~F-~~~G-~i~~v~~~---~~~--~g~skG~afV~F~~~e~A~ 49 (327)
+.+..||++-. ..|+ .=.+..++ +.. .|++.|||.| |++.|.|.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 56677887644 4555 22233332 222 3578888887 66655543
No 279
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=21.74 E-value=1.5e+02 Score=21.38 Aligned_cols=25 Identities=8% Similarity=0.306 Sum_probs=20.3
Q ss_pred CeeEEEEeeC-CCCCcccEEEEEeCC
Q 020372 20 TIKDLQILRG-SQQTSKGCAFLKYET 44 (327)
Q Consensus 20 ~i~~v~~~~~-~~g~skG~afV~F~~ 44 (327)
+|++|++.+- ..|+-|+||=|.|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 4788888655 478899999999998
No 280
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=21.33 E-value=1.7e+02 Score=28.71 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=35.7
Q ss_pred HHHHHHh----cccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 9 AEVSALF----SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 9 ~dL~~~F----~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
-||..+| ..+|.|+++.+-..+--..+..+++.|.+.++|.+|+..+.
T Consensus 281 ~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 281 YDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred ccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 4677776 35778888887554433456688999999999999987754
No 281
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=21.02 E-value=1.1e+02 Score=22.74 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=23.3
Q ss_pred eeEEEEeeCCCCCcccEEEEEeCCHHHHH
Q 020372 21 IKDLQILRGSQQTSKGCAFLKYETKEQAL 49 (327)
Q Consensus 21 i~~v~~~~~~~g~skG~afV~F~~~e~A~ 49 (327)
|-+|+|-|+++| +.|.|...|+++..-.
T Consensus 14 vp~VrLtRsrdg-~~g~a~f~F~~p~~l~ 41 (111)
T PLN00039 14 VPDVRLTRSRDG-TNGTAIFVFDQPSVFD 41 (111)
T ss_pred CCceEEEEccCC-CccEEEEEECCchhhc
Confidence 678999999888 6789999999996543
No 282
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.96 E-value=1.3e+02 Score=27.76 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=35.8
Q ss_pred CcCCCHHHHHHHhcccCCe-eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 3 PKNVSEAEVSALFSIYGTI-KDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G~i-~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
|....-+||...|+.|+.= -+|..+-|. .||-.|.+...|.+|+..-|
T Consensus 400 p~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 400 PDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred chhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhccC
Confidence 3445567888999999753 355555553 89999999999999996633
No 283
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.63 E-value=75 Score=29.29 Aligned_cols=46 Identities=11% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHHHHHHhcc--cCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHH
Q 020372 8 EAEVSALFSI--YGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALE 53 (327)
Q Consensus 8 e~dL~~~F~~--~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~ 53 (327)
-+++...|.. .+.+..+..-++. +..++|-.|++|...+.|+++..
T Consensus 196 ~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 196 QEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4688999999 6788888888885 88899999999999999998873
No 284
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.22 E-value=1.5e+02 Score=20.91 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.7
Q ss_pred CeeEEEEeeCC-CCCcccEEEEEeCCH
Q 020372 20 TIKDLQILRGS-QQTSKGCAFLKYETK 45 (327)
Q Consensus 20 ~i~~v~~~~~~-~g~skG~afV~F~~~ 45 (327)
+|++|+|.+-. +|+-|-|+=|+|++.
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 47889997765 899999999999883
No 285
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.19 E-value=1.1e+02 Score=25.33 Aligned_cols=27 Identities=4% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCCcCCCHHHHHHHhcccCCeeEEEEeeCCC
Q 020372 1 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQ 31 (327)
Q Consensus 1 ~Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~ 31 (327)
+|.++++.+||++.|.+. ++.|..|+|
T Consensus 60 qIdpev~~edikkryRkl----SilVHPDKN 86 (250)
T KOG1150|consen 60 QIDPEVTDEDIKKRYRKL----SILVHPDKN 86 (250)
T ss_pred hcCCCCCHHHHHHHHHhh----heeecCCCC
Confidence 367899999999999876 677888865
Done!