Query 020372
Match_columns 327
No_of_seqs 136 out of 1926
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.3E-34 4.5E-39 244.8 21.0 159 2-322 23-182 (213)
2 2qfj_A FBP-interacting repress 100.0 4E-34 1.4E-38 242.2 22.8 173 2-325 36-209 (216)
3 3md3_A Nuclear and cytoplasmic 100.0 4.1E-34 1.4E-38 231.8 21.4 158 2-319 8-165 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.7E-33 5.9E-38 228.8 19.6 155 2-318 11-168 (168)
5 1l3k_A Heterogeneous nuclear r 100.0 2.6E-33 8.8E-38 233.6 20.6 166 2-325 21-187 (196)
6 1fxl_A Paraneoplastic encephal 100.0 3.5E-33 1.2E-37 226.6 20.5 155 2-318 10-167 (167)
7 3nmr_A Cugbp ELAV-like family 100.0 3.8E-33 1.3E-37 228.2 20.3 159 2-319 11-175 (175)
8 2cjk_A Nuclear polyadenylated 100.0 4E-33 1.4E-37 226.4 14.9 156 2-322 11-167 (167)
9 3pgw_A U1-A; protein-RNA compl 100.0 5.1E-31 1.7E-35 232.3 25.9 78 237-319 203-281 (282)
10 3smz_A Protein raver-1, ribonu 100.0 4.8E-31 1.6E-35 232.7 20.6 163 2-324 103-267 (284)
11 2g4b_A Splicing factor U2AF 65 100.0 1.3E-30 4.6E-35 212.5 18.4 149 2-318 12-171 (172)
12 2yh0_A Splicing factor U2AF 65 100.0 3.2E-30 1.1E-34 215.2 20.9 86 239-324 112-197 (198)
13 2ghp_A U4/U6 snRNA-associated 100.0 7.6E-31 2.6E-35 232.3 17.3 165 2-322 125-292 (292)
14 3tyt_A Heterogeneous nuclear r 100.0 1.4E-30 4.9E-35 218.1 17.3 186 2-318 12-204 (205)
15 1fje_B Nucleolin RBD12, protei 100.0 7.4E-32 2.5E-36 220.8 8.2 155 2-322 21-175 (175)
16 2adc_A Polypyrimidine tract-bi 100.0 4.6E-29 1.6E-33 213.1 20.7 184 2-321 42-228 (229)
17 3smz_A Protein raver-1, ribonu 100.0 5.4E-29 1.9E-33 219.5 20.7 147 2-322 30-176 (284)
18 1qm9_A Polypyrimidine tract-bi 100.0 3.9E-29 1.3E-33 208.7 18.3 184 2-321 11-197 (198)
19 3sde_A Paraspeckle component 1 100.0 6E-29 2E-33 216.5 19.6 147 2-322 30-180 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 1E-28 3.6E-33 218.6 17.8 150 2-323 49-199 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 2E-25 6.7E-30 179.5 15.3 86 240-325 69-154 (158)
22 4fxv_A ELAV-like protein 1; RN 99.9 6.8E-23 2.3E-27 151.0 12.3 83 238-320 16-98 (99)
23 2i2y_A Fusion protein consists 99.9 1.7E-22 5.7E-27 160.9 11.9 80 238-322 70-149 (150)
24 3s8s_A Histone-lysine N-methyl 99.9 1.1E-21 3.7E-26 147.3 12.3 85 238-322 3-87 (110)
25 2cpz_A CUG triplet repeat RNA- 99.9 3.2E-21 1.1E-25 146.3 14.4 89 238-326 22-110 (115)
26 2lxi_A RNA-binding protein 10; 99.9 3E-22 1E-26 145.3 7.0 84 241-324 1-86 (91)
27 2lkz_A RNA-binding protein 5; 99.9 7.8E-22 2.7E-26 143.8 9.1 83 238-320 6-94 (95)
28 2cq0_A Eukaryotic translation 99.9 5.5E-21 1.9E-25 142.1 13.0 89 238-326 12-100 (103)
29 2do4_A Squamous cell carcinoma 99.9 1.4E-20 4.7E-25 139.1 14.6 86 238-324 14-99 (100)
30 3md1_A Nuclear and cytoplasmic 99.9 7.6E-21 2.6E-25 135.5 12.4 83 241-323 1-83 (83)
31 2dnz_A Probable RNA-binding pr 99.9 6.3E-21 2.2E-25 139.6 12.2 88 239-326 3-90 (95)
32 1whw_A Hypothetical protein ri 99.8 9.3E-21 3.2E-25 139.8 12.4 87 238-324 5-91 (99)
33 3bs9_A Nucleolysin TIA-1 isofo 99.8 1E-20 3.4E-25 136.1 12.0 83 239-321 4-86 (87)
34 2dgs_A DAZ-associated protein 99.8 1.2E-20 3.9E-25 139.3 12.3 87 238-325 7-93 (99)
35 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.2E-21 2.4E-25 141.2 11.2 88 238-325 9-96 (102)
36 2dgo_A Cytotoxic granule-assoc 99.8 2.7E-20 9.3E-25 141.2 14.6 87 238-324 12-98 (115)
37 1x5s_A Cold-inducible RNA-bind 99.8 8.7E-21 3E-25 140.7 11.5 88 238-325 9-96 (102)
38 1x5u_A Splicing factor 3B subu 99.8 1.3E-20 4.6E-25 140.5 12.4 88 238-325 12-99 (105)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 2.6E-20 8.8E-25 138.9 13.7 88 238-326 12-102 (105)
40 2cqc_A Arginine/serine-rich sp 99.8 1.9E-20 6.5E-25 137.0 12.7 84 237-320 11-94 (95)
41 3p5t_L Cleavage and polyadenyl 99.8 1.8E-21 6.2E-26 141.0 6.9 85 242-326 2-88 (90)
42 2x1f_A MRNA 3'-END-processing 99.8 8.8E-21 3E-25 139.1 10.4 85 240-324 1-85 (96)
43 1x5t_A Splicing factor 3B subu 99.8 9.5E-21 3.3E-25 138.9 10.5 87 239-325 3-90 (96)
44 2e5h_A Zinc finger CCHC-type a 99.8 2.4E-20 8.1E-25 136.2 12.5 82 238-319 13-94 (94)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.5E-20 5.3E-25 134.5 11.1 82 238-319 4-85 (85)
46 4f25_A Polyadenylate-binding p 99.8 1.8E-20 6E-25 142.1 12.0 82 241-324 5-86 (115)
47 2dnm_A SRP46 splicing factor; 99.8 1.5E-20 5E-25 139.8 11.3 87 238-324 10-96 (103)
48 2cpf_A RNA binding motif prote 99.8 1.6E-20 5.5E-25 138.2 11.3 87 239-325 3-92 (98)
49 2dng_A Eukaryotic translation 99.8 4.1E-20 1.4E-24 137.3 13.5 86 238-325 12-97 (103)
50 1u6f_A Tcubp1, RNA-binding pro 99.8 1.4E-19 4.9E-24 141.9 17.2 88 238-325 39-126 (139)
51 1x4h_A RNA-binding protein 28; 99.8 3.3E-20 1.1E-24 139.7 13.0 88 238-325 12-105 (111)
52 2d9p_A Polyadenylate-binding p 99.8 3.4E-20 1.2E-24 137.8 12.8 87 237-325 11-97 (103)
53 2khc_A Testis-specific RNP-typ 99.8 4E-20 1.4E-24 140.9 13.4 83 237-319 36-118 (118)
54 2jrs_A RNA-binding protein 39; 99.8 3.1E-20 1.1E-24 139.1 12.4 85 238-322 23-107 (108)
55 1oo0_B CG8781-PA, drosophila Y 99.8 2.1E-20 7.1E-25 140.7 11.4 88 238-325 23-110 (110)
56 1p27_B RNA-binding protein 8A; 99.8 2.8E-20 9.7E-25 138.9 11.8 86 238-323 20-105 (106)
57 2la6_A RNA-binding protein FUS 99.8 4E-20 1.4E-24 136.4 12.3 82 238-319 10-99 (99)
58 2cpe_A RNA-binding protein EWS 99.8 3.5E-20 1.2E-24 140.1 11.8 88 238-325 12-107 (113)
59 2cqd_A RNA-binding region cont 99.8 5.7E-20 1.9E-24 139.6 12.9 87 237-324 13-99 (116)
60 2cph_A RNA binding motif prote 99.8 5.1E-20 1.8E-24 137.8 12.5 87 238-324 12-100 (107)
61 2dgp_A Bruno-like 4, RNA bindi 99.8 3.7E-20 1.3E-24 138.3 11.6 87 238-324 10-99 (106)
62 2kxn_B Transformer-2 protein h 99.8 2E-20 6.9E-25 144.6 10.3 87 237-323 42-128 (129)
63 1wi8_A EIF-4B, eukaryotic tran 99.8 5.8E-20 2E-24 136.8 12.3 85 238-324 12-97 (104)
64 2do0_A HnRNP M, heterogeneous 99.8 1.4E-19 4.7E-24 137.1 14.6 84 238-322 12-95 (114)
65 2cqp_A RNA-binding protein 12; 99.8 3.4E-20 1.2E-24 136.5 10.8 86 238-323 12-97 (98)
66 2div_A TRNA selenocysteine ass 99.8 4.3E-20 1.5E-24 136.2 11.2 86 238-323 6-96 (99)
67 2dgx_A KIAA0430 protein; RRM d 99.8 6.9E-20 2.4E-24 134.2 12.1 85 239-326 7-95 (96)
68 4a8x_A RNA-binding protein wit 99.8 4.2E-20 1.5E-24 133.1 10.6 84 240-323 3-87 (88)
69 1x4a_A Splicing factor, argini 99.8 2.1E-19 7.2E-24 134.9 14.5 85 238-325 19-103 (109)
70 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.8E-19 6.2E-24 133.8 14.0 86 238-325 12-97 (103)
71 3ns6_A Eukaryotic translation 99.8 5.5E-21 1.9E-25 141.2 5.7 82 240-321 5-93 (100)
72 2lea_A Serine/arginine-rich sp 99.8 7E-21 2.4E-25 148.4 6.3 85 240-324 46-130 (135)
73 3ucg_A Polyadenylate-binding p 99.8 9.9E-20 3.4E-24 131.4 11.7 81 241-322 6-86 (89)
74 2cq3_A RNA-binding protein 9; 99.8 2.7E-19 9.2E-24 132.9 14.4 86 237-324 11-96 (103)
75 2m2b_A RNA-binding protein 10; 99.8 1.7E-20 5.7E-25 145.7 8.1 86 237-323 19-110 (131)
76 2dh8_A DAZ-associated protein 99.8 6E-20 2E-24 136.9 10.7 87 238-325 13-99 (105)
77 2fy1_A RNA-binding motif prote 99.8 7.5E-20 2.6E-24 138.8 11.4 85 238-323 4-88 (116)
78 2dgv_A HnRNP M, heterogeneous 99.8 9.6E-20 3.3E-24 132.4 11.5 85 238-324 5-89 (92)
79 2dhg_A TRNA selenocysteine ass 99.8 6.1E-20 2.1E-24 136.6 10.6 86 238-324 6-93 (104)
80 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.7E-19 5.7E-24 144.4 13.8 89 238-326 36-124 (156)
81 2ywk_A Putative RNA-binding pr 99.8 9.5E-20 3.2E-24 133.2 11.1 82 238-320 13-94 (95)
82 3ex7_B RNA-binding protein 8A; 99.8 7.6E-20 2.6E-24 141.0 10.9 87 238-324 19-105 (126)
83 4f25_A Polyadenylate-binding p 99.8 2.2E-20 7.6E-25 141.6 7.7 71 2-76 13-83 (115)
84 2dgw_A Probable RNA-binding pr 99.8 2.3E-19 8E-24 130.1 12.8 84 238-324 7-90 (91)
85 3ulh_A THO complex subunit 4; 99.8 2E-19 6.9E-24 134.5 12.4 82 238-320 26-107 (107)
86 1sjq_A Polypyrimidine tract-bi 99.8 6.9E-20 2.4E-24 134.9 9.5 81 238-324 13-95 (105)
87 3r27_A HnRNP L, heterogeneous 99.8 1.5E-19 5E-24 131.7 11.0 80 237-322 17-98 (100)
88 1x4b_A Heterogeneous nuclear r 99.8 9.9E-20 3.4E-24 138.3 10.4 85 239-324 25-109 (116)
89 3n9u_C Cleavage and polyadenyl 99.8 9.5E-20 3.3E-24 145.3 10.7 82 240-321 54-137 (156)
90 3s7r_A Heterogeneous nuclear r 99.8 2.3E-19 7.9E-24 128.9 11.8 80 238-318 8-87 (87)
91 2kt5_A RNA and export factor-b 99.8 1.2E-18 4.1E-23 133.8 16.5 88 238-326 32-119 (124)
92 2ek1_A RNA-binding protein 12; 99.8 5.5E-20 1.9E-24 134.5 8.3 83 238-320 12-94 (95)
93 2cqg_A TDP-43, TAR DNA-binding 99.8 6.2E-19 2.1E-23 130.9 14.1 85 238-324 12-96 (103)
94 2wbr_A GW182, gawky, LD47780P; 99.8 1.4E-19 4.6E-24 127.2 9.8 74 240-319 6-79 (89)
95 2rs2_A Musashi-1, RNA-binding 99.8 1.5E-19 5.1E-24 135.6 10.7 86 238-324 22-107 (109)
96 1wex_A Hypothetical protein (r 99.8 2.6E-19 9E-24 132.6 11.5 83 238-326 12-96 (104)
97 1p1t_A Cleavage stimulation fa 99.8 1.3E-19 4.5E-24 134.8 9.8 84 240-323 7-90 (104)
98 1wez_A HnRNP H', FTP-3, hetero 99.8 2.3E-19 7.8E-24 132.8 10.6 85 238-325 12-96 (102)
99 1s79_A Lupus LA protein; RRM, 99.8 1.1E-19 3.8E-24 134.6 8.5 80 239-320 9-88 (103)
100 2cq1_A PTB-like protein L; RRM 99.8 6.9E-19 2.4E-23 129.5 12.6 81 238-324 12-94 (101)
101 2cq4_A RNA binding motif prote 99.8 1.3E-19 4.4E-24 137.2 8.9 82 240-322 24-105 (114)
102 1x5o_A RNA binding motif, sing 99.8 1.2E-18 4.1E-23 131.8 14.2 84 238-322 22-113 (114)
103 2fc9_A NCL protein; structure 99.8 5.7E-19 1.9E-23 130.6 11.9 84 238-325 12-95 (101)
104 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6E-20 2.1E-24 135.6 6.3 83 238-322 16-99 (100)
105 2dis_A Unnamed protein product 99.8 2.5E-19 8.6E-24 134.5 9.9 85 239-323 6-94 (109)
106 2ad9_A Polypyrimidine tract-bi 99.8 5.9E-19 2E-23 133.1 11.7 82 238-325 28-111 (119)
107 1x4e_A RNA binding motif, sing 99.8 5.2E-20 1.8E-24 131.7 5.5 81 239-319 3-83 (85)
108 1fj7_A Nucleolin RBD1, protein 99.8 4.9E-20 1.7E-24 136.4 5.5 86 238-325 14-99 (101)
109 4fxv_A ELAV-like protein 1; RN 99.8 3.1E-19 1.1E-23 131.3 9.5 71 2-75 27-98 (99)
110 2fc8_A NCL protein; structure 99.8 1E-18 3.5E-23 129.5 12.4 85 238-325 12-96 (102)
111 2cpx_A Hypothetical protein FL 99.8 2.2E-19 7.5E-24 136.1 8.9 89 238-326 22-110 (115)
112 2db1_A Heterogeneous nuclear r 99.8 4.9E-19 1.7E-23 134.7 10.9 81 238-320 14-97 (118)
113 2err_A Ataxin-2-binding protei 99.8 4.7E-19 1.6E-23 132.9 10.6 82 238-321 26-107 (109)
114 2jwn_A Embryonic polyadenylate 99.8 6.2E-19 2.1E-23 135.5 11.3 84 240-324 35-118 (124)
115 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 9.1E-19 3.1E-23 137.4 12.4 81 238-318 60-140 (140)
116 2dnq_A RNA-binding protein 4B; 99.8 9.4E-19 3.2E-23 126.6 11.5 80 238-325 5-84 (90)
117 2cpi_A CCR4-NOT transcription 99.8 4.7E-19 1.6E-23 133.3 10.2 85 238-322 12-102 (111)
118 2mss_A Protein (musashi1); RNA 99.8 1.4E-19 4.7E-24 126.3 6.7 75 243-318 1-75 (75)
119 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9E-19 3.1E-23 141.4 12.4 87 238-324 69-155 (165)
120 2ki2_A SS-DNA binding protein 99.8 5.9E-20 2E-24 132.9 4.8 82 242-324 2-83 (90)
121 1wg5_A Heterogeneous nuclear r 99.8 7E-19 2.4E-23 130.8 10.7 83 238-322 12-95 (104)
122 1why_A Hypothetical protein ri 99.8 1.7E-18 5.6E-23 127.1 12.4 81 238-324 14-96 (97)
123 2nlw_A Eukaryotic translation 99.8 5.4E-19 1.9E-23 131.6 9.9 82 239-322 13-101 (105)
124 2jvr_A Nucleolar protein 3; RN 99.8 4.4E-19 1.5E-23 132.8 9.2 80 239-322 26-106 (111)
125 2cpy_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 135.0 8.5 82 238-321 12-94 (114)
126 1x4d_A Matrin 3; structural ge 99.8 6.5E-19 2.2E-23 129.6 9.9 78 239-322 13-93 (102)
127 1x4c_A Splicing factor, argini 99.8 2.1E-18 7.2E-23 129.1 12.9 79 239-324 13-96 (108)
128 2hgl_A HNRPF protein, heteroge 99.8 2.7E-19 9.1E-24 139.0 8.2 82 238-321 41-125 (136)
129 1wel_A RNA-binding protein 12; 99.8 4.7E-19 1.6E-23 136.1 9.5 83 238-321 22-104 (124)
130 2a3j_A U1 small nuclear ribonu 99.8 8E-19 2.8E-23 134.7 10.6 82 238-322 26-111 (127)
131 3pgw_S U1-70K; protein-RNA com 99.8 3.5E-19 1.2E-23 165.0 10.3 83 240-322 101-183 (437)
132 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.8E-19 6.1E-24 126.4 6.4 76 242-318 1-76 (77)
133 2e5j_A Methenyltetrahydrofolat 99.8 2E-18 6.9E-23 126.6 11.8 81 238-323 16-96 (97)
134 1x4f_A Matrin 3; structural ge 99.8 9.9E-19 3.4E-23 130.5 10.2 81 238-324 22-105 (112)
135 2dgt_A RNA-binding protein 30; 99.8 3.1E-18 1.1E-22 124.3 12.2 81 238-326 7-87 (92)
136 1fjc_A Nucleolin RBD2, protein 99.8 1E-18 3.6E-23 127.9 9.4 83 238-325 13-95 (96)
137 1x4g_A Nucleolysin TIAR; struc 99.8 2.4E-18 8E-23 129.1 11.2 82 238-325 22-103 (109)
138 2xnq_A Nuclear polyadenylated 99.8 4.3E-18 1.5E-22 124.8 11.7 77 238-322 19-96 (97)
139 2hvz_A Splicing factor, argini 99.8 1.2E-18 4.2E-23 128.8 8.8 78 242-324 1-78 (101)
140 2dnn_A RNA-binding protein 12; 99.8 1.9E-18 6.5E-23 129.0 9.8 78 240-320 15-92 (109)
141 2dgu_A Heterogeneous nuclear r 99.8 5.1E-18 1.8E-22 125.9 12.1 79 238-324 8-86 (103)
142 2cpd_A Apobec-1 stimulating pr 99.8 9.7E-18 3.3E-22 123.5 13.4 79 238-324 12-92 (99)
143 3s8s_A Histone-lysine N-methyl 99.8 2.8E-18 9.7E-23 128.6 10.6 75 2-79 14-89 (110)
144 2krb_A Eukaryotic translation 99.8 4.7E-19 1.6E-23 125.5 6.0 74 241-316 1-81 (81)
145 2cpj_A Non-POU domain-containi 99.8 4.4E-18 1.5E-22 125.3 11.4 80 238-323 12-91 (99)
146 2dnp_A RNA-binding protein 14; 99.8 5.1E-18 1.7E-22 122.7 11.5 79 238-324 6-84 (90)
147 1wf1_A RNA-binding protein RAL 99.8 8E-18 2.7E-22 126.4 12.9 78 240-325 26-104 (110)
148 2la4_A Nuclear and cytoplasmic 99.8 2.1E-18 7.3E-23 127.5 9.3 77 239-321 25-101 (101)
149 2j8a_A Histone-lysine N-methyl 99.8 2.1E-18 7.1E-23 129.3 9.1 79 242-320 3-95 (136)
150 1nu4_A U1A RNA binding domain; 99.8 1.5E-18 5.1E-23 127.3 8.2 83 238-323 5-91 (97)
151 2lmi_A GRSF-1, G-rich sequence 99.8 3.2E-19 1.1E-23 133.3 4.7 82 238-321 8-92 (107)
152 2ytc_A PRE-mRNA-splicing facto 99.8 6.1E-18 2.1E-22 120.9 11.1 76 238-319 9-85 (85)
153 3q2s_C Cleavage and polyadenyl 99.8 1.8E-18 6E-23 146.9 9.6 81 240-320 67-149 (229)
154 1iqt_A AUF1, heterogeneous nuc 99.8 5.9E-19 2E-23 123.0 5.3 75 243-318 1-75 (75)
155 2cqh_A IGF-II mRNA-binding pro 99.8 3.2E-18 1.1E-22 124.6 9.4 80 238-324 5-86 (93)
156 2xs2_A Deleted in azoospermia- 99.8 1.2E-18 4.1E-23 129.1 7.1 83 238-323 6-88 (102)
157 2jvo_A Nucleolar protein 3; nu 99.8 4.8E-18 1.6E-22 127.0 10.3 79 238-324 28-106 (108)
158 2lcw_A RNA-binding protein FUS 99.6 6.5E-20 2.2E-24 139.3 0.0 87 238-324 4-98 (116)
159 2dha_A FLJ20171 protein; RRM d 99.7 9.6E-19 3.3E-23 133.4 6.2 80 239-320 21-104 (123)
160 2lkz_A RNA-binding protein 5; 99.7 1.2E-18 4E-23 126.9 6.4 72 2-75 17-94 (95)
161 2lxi_A RNA-binding protein 10; 99.7 5.2E-19 1.8E-23 128.1 4.2 73 2-76 9-83 (91)
162 2hgm_A HNRPF protein, heteroge 99.7 1.2E-18 4.2E-23 133.1 6.0 81 238-321 39-121 (126)
163 3lqv_A PRE-mRNA branch site pr 99.7 4.2E-18 1.5E-22 129.0 9.0 82 238-322 5-86 (115)
164 4f02_A Polyadenylate-binding p 99.7 1.2E-17 4E-22 140.6 12.6 83 239-321 13-95 (213)
165 2kvi_A Nuclear polyadenylated 99.7 5.2E-18 1.8E-22 124.2 9.0 79 238-324 7-86 (96)
166 1b7f_A Protein (SXL-lethal pro 99.7 1.5E-17 5.3E-22 134.2 11.5 85 240-324 2-86 (168)
167 2hgn_A Heterogeneous nuclear r 99.7 9.7E-19 3.3E-23 136.2 4.2 83 238-323 43-125 (139)
168 2cq2_A Hypothetical protein LO 99.7 8.7E-18 3E-22 125.4 9.2 83 238-326 22-111 (114)
169 1fxl_A Paraneoplastic encephal 99.7 2.1E-17 7.2E-22 133.2 12.2 83 241-323 2-84 (167)
170 2dnh_A Bruno-like 5, RNA bindi 99.7 1.5E-17 5E-22 123.9 10.2 75 2-76 23-97 (105)
171 2diu_A KIAA0430 protein; struc 99.7 1.5E-17 5E-22 118.0 9.5 74 240-323 7-86 (96)
172 2f3j_A RNA and export factor b 99.7 1.1E-17 3.8E-22 136.2 10.2 84 238-322 85-168 (177)
173 2e44_A Insulin-like growth fac 99.7 1.9E-17 6.4E-22 121.2 10.3 80 239-322 13-93 (96)
174 1x5p_A Negative elongation fac 99.7 4.8E-17 1.6E-21 119.2 12.4 80 238-325 12-91 (97)
175 2e5g_A U6 snRNA-specific termi 99.7 2.1E-17 7.3E-22 120.4 10.4 79 240-324 7-85 (94)
176 1sjr_A Polypyrimidine tract-bi 99.7 2.3E-17 7.8E-22 130.7 11.3 77 242-322 47-125 (164)
177 3p5t_L Cleavage and polyadenyl 99.7 5E-18 1.7E-22 122.7 6.7 74 2-78 9-85 (90)
178 3zzy_A Polypyrimidine tract-bi 99.7 4.7E-17 1.6E-21 124.3 12.2 77 242-323 29-108 (130)
179 2pe8_A Splicing factor 45; RRM 99.7 4.3E-17 1.5E-21 120.8 11.7 83 238-320 5-93 (105)
180 1whx_A Hypothetical protein ri 99.7 1.5E-17 5.2E-22 125.0 9.3 76 240-321 9-84 (111)
181 3egn_A RNA-binding protein 40; 99.7 4.1E-18 1.4E-22 134.3 6.3 85 238-323 42-132 (143)
182 1wg1_A KIAA1579 protein, homol 99.7 3.1E-17 1E-21 118.0 9.5 75 240-321 4-78 (88)
183 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.9E-17 1E-21 117.8 9.4 72 2-76 14-86 (87)
184 3md1_A Nuclear and cytoplasmic 99.7 3.8E-17 1.3E-21 116.1 9.7 72 2-76 9-81 (83)
185 2dgp_A Bruno-like 4, RNA bindi 99.7 1.9E-17 6.5E-22 123.5 8.3 75 2-76 21-96 (106)
186 3d2w_A TAR DNA-binding protein 99.7 4.4E-17 1.5E-21 117.3 9.2 79 237-324 7-87 (89)
187 2do4_A Squamous cell carcinoma 99.7 4.8E-17 1.6E-21 119.9 9.6 72 2-76 25-96 (100)
188 3beg_B Splicing factor, argini 99.7 2.5E-17 8.6E-22 124.6 8.0 77 240-323 15-96 (115)
189 2dnz_A Probable RNA-binding pr 99.7 7.2E-17 2.5E-21 117.8 9.9 72 2-76 13-85 (95)
190 2wbr_A GW182, gawky, LD47780P; 99.7 2.3E-17 7.7E-22 115.9 6.7 65 2-74 15-79 (89)
191 2ywk_A Putative RNA-binding pr 99.7 5.2E-17 1.8E-21 118.5 8.9 71 2-75 24-94 (95)
192 1l3k_A Heterogeneous nuclear r 99.7 9.3E-17 3.2E-21 133.0 11.5 84 238-322 10-93 (196)
193 3ns6_A Eukaryotic translation 99.7 2.4E-17 8.1E-22 121.5 6.7 75 2-78 14-95 (100)
194 3tyt_A Heterogeneous nuclear r 99.7 7.7E-17 2.6E-21 134.6 10.6 77 240-321 3-80 (205)
195 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.6E-17 1.6E-21 116.2 8.0 70 2-74 15-85 (85)
196 2x1f_A MRNA 3'-END-processing 99.7 7.4E-17 2.5E-21 118.0 8.9 75 2-79 10-85 (96)
197 2dnl_A Cytoplasmic polyadenyla 99.7 4.2E-17 1.4E-21 123.2 7.7 76 239-317 6-84 (114)
198 2e5i_A Heterogeneous nuclear r 99.7 6.5E-16 2.2E-20 117.4 14.3 74 243-322 27-103 (124)
199 2la6_A RNA-binding protein FUS 99.7 1.1E-16 3.8E-21 117.7 9.8 70 2-74 21-99 (99)
200 3n9u_C Cleavage and polyadenyl 99.7 1.4E-16 4.8E-21 126.9 11.0 75 2-79 63-140 (156)
201 2e5h_A Zinc finger CCHC-type a 99.7 8.3E-17 2.8E-21 117.2 8.7 70 2-74 24-94 (94)
202 2cqc_A Arginine/serine-rich sp 99.7 9.9E-17 3.4E-21 117.0 9.1 71 2-75 23-94 (95)
203 3md3_A Nuclear and cytoplasmic 99.7 1.5E-16 5.1E-21 128.0 11.1 81 242-323 1-81 (166)
204 1s79_A Lupus LA protein; RRM, 99.7 7.9E-17 2.7E-21 119.2 8.5 72 2-77 19-90 (103)
205 2cq0_A Eukaryotic translation 99.7 8.7E-17 3E-21 119.2 8.7 72 2-76 23-95 (103)
206 1whw_A Hypothetical protein ri 99.7 8.4E-17 2.9E-21 118.4 8.5 72 2-76 16-88 (99)
207 2dgs_A DAZ-associated protein 99.7 1.4E-16 4.8E-21 117.2 9.7 71 2-76 18-89 (99)
208 2cpz_A CUG triplet repeat RNA- 99.7 8.9E-17 3E-21 121.6 8.8 72 2-76 33-105 (115)
209 2fy1_A RNA-binding motif prote 99.7 9.3E-17 3.2E-21 121.6 8.9 72 2-76 15-86 (116)
210 1p1t_A Cleavage stimulation fa 99.7 1.2E-16 4.1E-21 118.6 9.2 78 2-82 16-94 (104)
211 2d9p_A Polyadenylate-binding p 99.7 1.5E-16 5.3E-21 117.8 9.7 71 2-76 23-93 (103)
212 1p27_B RNA-binding protein 8A; 99.7 1.5E-16 5.2E-21 118.5 9.6 72 2-76 31-103 (106)
213 1x5u_A Splicing factor 3B subu 99.7 1.2E-16 4E-21 118.9 8.6 72 2-76 23-95 (105)
214 2dgo_A Cytotoxic granule-assoc 99.7 1.6E-16 5.5E-21 120.2 9.6 72 2-76 23-95 (115)
215 2jrs_A RNA-binding protein 39; 99.7 1.4E-16 4.9E-21 119.0 8.9 72 2-76 34-106 (108)
216 1x5s_A Cold-inducible RNA-bind 99.7 9.2E-17 3.1E-21 118.8 7.8 72 2-76 20-92 (102)
217 3ulh_A THO complex subunit 4; 99.7 1.7E-16 5.8E-21 118.5 9.3 70 2-74 37-106 (107)
218 2kxn_B Transformer-2 protein h 99.7 1.2E-16 4.2E-21 123.2 8.5 72 2-76 54-126 (129)
219 2dnm_A SRP46 splicing factor; 99.7 1.1E-16 3.8E-21 118.6 7.8 72 2-76 21-93 (103)
220 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.6E-17 2.6E-21 119.3 6.9 72 2-76 20-92 (102)
221 2do0_A HnRNP M, heterogeneous 99.7 2.3E-16 7.9E-21 119.1 9.7 72 2-76 23-94 (114)
222 1x5o_A RNA binding motif, sing 99.7 2.6E-16 9E-21 118.8 9.9 75 2-76 33-112 (114)
223 2bz2_A Negative elongation fac 99.7 2.6E-16 8.9E-21 119.9 9.7 79 239-325 37-115 (121)
224 2mss_A Protein (musashi1); RNA 99.7 8.5E-17 2.9E-21 112.0 6.4 68 2-73 7-75 (75)
225 1x5t_A Splicing factor 3B subu 99.7 8.7E-17 3E-21 117.6 6.8 72 2-76 13-86 (96)
226 2qfj_A FBP-interacting repress 99.7 1.3E-16 4.3E-21 134.3 8.4 83 240-322 27-109 (216)
227 1wf0_A TDP-43, TAR DNA-binding 99.7 9.1E-17 3.1E-21 115.5 6.5 78 240-324 4-81 (88)
228 2div_A TRNA selenocysteine ass 99.7 1.4E-16 4.7E-21 117.2 7.5 74 2-76 17-94 (99)
229 2cph_A RNA binding motif prote 99.7 2.7E-16 9.1E-21 117.4 9.1 72 2-76 23-97 (107)
230 3ucg_A Polyadenylate-binding p 99.7 2.7E-16 9.3E-21 113.2 8.3 71 2-76 14-85 (89)
231 2dhg_A TRNA selenocysteine ass 99.7 1.9E-16 6.5E-21 117.6 7.6 73 2-76 17-90 (104)
232 2dgv_A HnRNP M, heterogeneous 99.7 3.1E-16 1.1E-20 113.7 8.5 71 2-76 16-86 (92)
233 1oo0_B CG8781-PA, drosophila Y 99.7 2.6E-16 8.9E-21 118.1 8.4 72 2-76 34-106 (110)
234 2hzc_A Splicing factor U2AF 65 99.7 3.5E-16 1.2E-20 112.1 8.7 72 239-317 4-86 (87)
235 2hgl_A HNRPF protein, heteroge 99.7 1.4E-16 4.8E-21 123.6 7.0 72 2-77 52-126 (136)
236 1sjq_A Polypyrimidine tract-bi 99.7 1.2E-16 4.1E-21 117.5 6.3 68 2-76 24-92 (105)
237 2dnn_A RNA-binding protein 12; 99.7 2.6E-16 8.9E-21 117.4 8.1 70 2-76 24-93 (109)
238 2cq3_A RNA-binding protein 9; 99.7 5.2E-16 1.8E-20 115.0 9.7 71 2-76 23-93 (103)
239 2khc_A Testis-specific RNP-typ 99.7 1.5E-16 5E-21 121.0 6.9 70 2-74 48-118 (118)
240 2cqp_A RNA-binding protein 12; 99.7 1.2E-16 4E-21 117.4 6.0 72 2-76 23-95 (98)
241 3zzy_A Polypyrimidine tract-bi 99.7 3.6E-16 1.2E-20 119.4 8.8 70 2-76 36-106 (130)
242 3r27_A HnRNP L, heterogeneous 99.7 3.7E-16 1.2E-20 113.8 8.5 68 2-76 29-97 (100)
243 1wez_A HnRNP H', FTP-3, hetero 99.6 1.7E-16 5.7E-21 117.3 6.8 70 2-76 23-92 (102)
244 2db1_A Heterogeneous nuclear r 99.6 2E-16 6.9E-21 120.2 7.4 71 2-76 25-98 (118)
245 2cpf_A RNA binding motif prote 99.6 2.5E-16 8.5E-21 115.6 7.6 72 2-76 13-88 (98)
246 2dit_A HIV TAT specific factor 99.6 1.5E-15 5.2E-20 114.2 12.1 82 238-323 12-104 (112)
247 1x4h_A RNA-binding protein 28; 99.6 3.4E-16 1.1E-20 117.6 8.5 72 2-76 23-101 (111)
248 2ek1_A RNA-binding protein 12; 99.6 1.4E-16 4.7E-21 116.2 6.1 71 2-75 23-94 (95)
249 2voo_A Lupus LA protein; RNA-b 99.6 8.5E-16 2.9E-20 126.9 11.4 80 241-322 109-188 (193)
250 2cqi_A Nucleolysin TIAR; RNA r 99.6 4.6E-16 1.6E-20 115.3 8.7 71 2-76 23-93 (103)
251 2kt5_A RNA and export factor-b 99.6 4.7E-16 1.6E-20 119.3 8.9 72 2-76 43-114 (124)
252 2dgw_A Probable RNA-binding pr 99.6 4E-16 1.4E-20 112.8 8.0 70 2-76 18-87 (91)
253 3nmr_A Cugbp ELAV-like family 99.6 9.2E-16 3.1E-20 124.5 10.9 84 240-323 2-90 (175)
254 1sjr_A Polypyrimidine tract-bi 99.6 5.1E-16 1.8E-20 123.0 9.0 71 2-76 54-124 (164)
255 2cpy_A RNA-binding protein 12; 99.6 2E-16 6.8E-21 119.5 6.4 74 2-79 23-97 (114)
256 1u6f_A Tcubp1, RNA-binding pro 99.6 3.4E-16 1.2E-20 122.6 7.9 72 2-76 50-122 (139)
257 1wg5_A Heterogeneous nuclear r 99.6 3.5E-16 1.2E-20 116.1 7.5 71 2-76 23-94 (104)
258 2cq4_A RNA binding motif prote 99.6 3E-16 1E-20 118.5 7.1 73 2-78 33-106 (114)
259 2dgx_A KIAA0430 protein; RRM d 99.6 4.9E-16 1.7E-20 113.5 8.0 70 2-76 17-90 (96)
260 2dng_A Eukaryotic translation 99.6 6.2E-16 2.1E-20 114.6 8.5 70 2-76 23-93 (103)
261 2cpe_A RNA-binding protein EWS 99.6 4E-16 1.4E-20 117.6 7.5 72 2-76 23-103 (113)
262 3v4m_A Splicing factor U2AF 65 99.6 8.8E-16 3E-20 113.8 9.2 81 239-319 3-95 (105)
263 4a8x_A RNA-binding protein wit 99.6 3.2E-16 1.1E-20 112.6 6.6 72 2-76 12-85 (88)
264 2err_A Ataxin-2-binding protei 99.6 4.1E-16 1.4E-20 116.7 7.2 71 2-76 37-107 (109)
265 1x4e_A RNA binding motif, sing 99.6 1.5E-16 5E-21 113.6 4.5 70 2-74 13-83 (85)
266 3ex7_B RNA-binding protein 8A; 99.6 6.2E-16 2.1E-20 118.9 8.3 72 2-76 30-102 (126)
267 1wi8_A EIF-4B, eukaryotic tran 99.6 6E-16 2.1E-20 114.8 8.0 70 2-76 23-94 (104)
268 2cqd_A RNA-binding region cont 99.6 5.3E-16 1.8E-20 117.5 7.6 71 2-76 25-96 (116)
269 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.2E-16 1.1E-20 109.6 5.8 68 2-73 8-76 (77)
270 2ki2_A SS-DNA binding protein 99.6 1.5E-16 5.2E-21 114.8 4.2 73 2-78 9-82 (90)
271 3s7r_A Heterogeneous nuclear r 99.6 8.3E-16 2.8E-20 110.2 8.0 68 2-73 19-87 (87)
272 3pgw_A U1-A; protein-RNA compl 99.6 1.8E-15 6.3E-20 132.6 11.9 82 238-322 6-91 (282)
273 2cjk_A Nuclear polyadenylated 99.6 7E-16 2.4E-20 124.4 8.2 80 240-321 2-81 (167)
274 2a3j_A U1 small nuclear ribonu 99.6 9.4E-16 3.2E-20 117.5 8.5 76 2-82 37-116 (127)
275 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.5E-16 1.2E-20 115.2 5.7 70 2-76 27-98 (100)
276 2dh8_A DAZ-associated protein 99.6 4.7E-16 1.6E-20 115.6 6.4 71 2-76 24-95 (105)
277 2lmi_A GRSF-1, G-rich sequence 99.6 3.3E-16 1.1E-20 116.9 5.5 72 2-77 19-93 (107)
278 2e5i_A Heterogeneous nuclear r 99.6 2E-15 6.8E-20 114.7 9.7 69 2-76 33-102 (124)
279 2cpi_A CCR4-NOT transcription 99.6 6.7E-16 2.3E-20 116.0 7.0 72 2-76 23-101 (111)
280 2dha_A FLJ20171 protein; RRM d 99.6 4.1E-16 1.4E-20 118.8 5.8 71 2-76 31-105 (123)
281 1x4d_A Matrin 3; structural ge 99.6 4.3E-16 1.5E-20 114.5 5.7 68 2-76 23-92 (102)
282 3ue2_A Poly(U)-binding-splicin 99.6 2.4E-15 8.1E-20 113.6 9.9 80 240-319 19-107 (118)
283 2ad9_A Polypyrimidine tract-bi 99.6 1.4E-15 4.8E-20 114.6 8.5 68 2-76 39-107 (119)
284 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.5E-15 5E-20 121.3 9.2 72 2-76 47-119 (156)
285 2m2b_A RNA-binding protein 10; 99.6 2.4E-16 8.2E-21 122.1 4.3 71 2-76 31-108 (131)
286 2jwn_A Embryonic polyadenylate 99.6 1.1E-15 3.6E-20 117.3 7.7 71 2-76 44-115 (124)
287 1x4a_A Splicing factor, argini 99.6 1.6E-15 5.6E-20 113.5 8.5 70 2-76 30-99 (109)
288 2rs2_A Musashi-1, RNA-binding 99.6 1.2E-15 4.1E-20 114.1 7.7 71 2-76 33-104 (109)
289 2kn4_A Immunoglobulin G-bindin 99.6 8.5E-16 2.9E-20 123.0 7.3 72 2-76 78-150 (158)
290 3q2s_C Cleavage and polyadenyl 99.6 1.4E-15 4.7E-20 129.0 8.8 74 2-78 76-152 (229)
291 1wex_A Hypothetical protein (r 99.6 2.1E-15 7E-20 111.5 8.4 68 2-76 23-91 (104)
292 1x4b_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 115.6 7.2 71 2-76 35-106 (116)
293 2adc_A Polypyrimidine tract-bi 99.6 3E-15 1E-19 127.3 10.5 79 238-321 31-110 (229)
294 2dis_A Unnamed protein product 99.6 1.3E-15 4.5E-20 114.0 7.3 73 2-76 16-92 (109)
295 1jmt_A Splicing factor U2AF 35 99.6 5.1E-16 1.7E-20 114.9 4.7 62 9-73 41-103 (104)
296 2cq1_A PTB-like protein L; RRM 99.6 3E-15 1E-19 110.0 8.7 67 2-76 23-91 (101)
297 2lea_A Serine/arginine-rich sp 99.6 7.2E-16 2.5E-20 119.9 5.7 72 2-76 55-127 (135)
298 2hgn_A Heterogeneous nuclear r 99.6 3.7E-16 1.3E-20 121.6 4.0 70 2-76 54-123 (139)
299 1iqt_A AUF1, heterogeneous nuc 99.6 5.3E-16 1.8E-20 107.9 4.4 68 2-73 7-75 (75)
300 2nlw_A Eukaryotic translation 99.6 1E-15 3.4E-20 113.8 6.1 72 2-76 23-100 (105)
301 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.6E-15 5.3E-20 118.9 7.4 69 2-73 71-140 (140)
302 1wel_A RNA-binding protein 12; 99.6 1.6E-15 5.4E-20 116.3 7.2 72 2-77 33-105 (124)
303 2cqg_A TDP-43, TAR DNA-binding 99.6 4E-15 1.4E-19 110.1 9.1 70 2-76 23-93 (103)
304 2cq2_A Hypothetical protein LO 99.6 1.2E-15 4.1E-20 113.8 6.2 70 2-76 35-106 (114)
305 2krb_A Eukaryotic translation 99.6 7.3E-16 2.5E-20 108.9 4.8 66 2-70 9-80 (81)
306 2fc9_A NCL protein; structure 99.6 1.9E-15 6.3E-20 111.5 7.1 69 2-76 23-91 (101)
307 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3E-15 1E-19 120.6 8.7 75 2-79 80-155 (165)
308 1fje_B Nucleolin RBD12, protei 99.6 1E-15 3.5E-20 124.5 5.8 85 237-323 9-93 (175)
309 3lqv_A PRE-mRNA branch site pr 99.6 5.1E-15 1.7E-19 111.9 9.3 71 2-77 16-86 (115)
310 1why_A Hypothetical protein ri 99.6 4.5E-15 1.5E-19 108.6 8.7 68 2-76 25-93 (97)
311 2jvr_A Nucleolar protein 3; RN 99.6 1.7E-15 5.9E-20 113.1 6.5 69 2-76 36-105 (111)
312 2hgm_A HNRPF protein, heteroge 99.6 1.1E-15 3.8E-20 116.7 5.4 70 2-76 50-121 (126)
313 3u1l_A PRE-mRNA-splicing facto 99.6 3.5E-15 1.2E-19 126.1 8.7 79 238-322 131-230 (240)
314 2pe8_A Splicing factor 45; RRM 99.6 6.5E-15 2.2E-19 109.1 9.0 66 7-75 26-93 (105)
315 1jmt_A Splicing factor U2AF 35 99.6 1.1E-15 3.6E-20 113.2 4.4 72 246-318 20-103 (104)
316 2cpj_A Non-POU domain-containi 99.6 5E-15 1.7E-19 108.8 8.0 67 2-76 23-89 (99)
317 2hvz_A Splicing factor, argini 99.6 3.3E-15 1.1E-19 110.2 7.1 68 2-76 8-75 (101)
318 1qm9_A Polypyrimidine tract-bi 99.6 3.8E-15 1.3E-19 123.6 8.3 77 240-321 2-79 (198)
319 1nu4_A U1A RNA binding domain; 99.6 1.9E-15 6.4E-20 110.6 5.5 74 2-80 16-93 (97)
320 2f3j_A RNA and export factor b 99.6 5E-15 1.7E-19 120.5 8.4 72 2-76 96-167 (177)
321 1x4f_A Matrin 3; structural ge 99.6 2.4E-15 8.2E-20 112.1 5.9 68 2-76 33-102 (112)
322 2dnq_A RNA-binding protein 4B; 99.6 1.2E-14 4.1E-19 104.8 9.0 65 2-76 16-80 (90)
323 1whx_A Hypothetical protein ri 99.6 6.1E-15 2.1E-19 110.7 7.7 67 2-76 18-84 (111)
324 2la4_A Nuclear and cytoplasmic 99.6 5E-15 1.7E-19 109.2 6.4 66 2-75 35-100 (101)
325 2j8a_A Histone-lysine N-methyl 99.6 5.5E-15 1.9E-19 110.8 6.5 73 3-78 15-98 (136)
326 2ytc_A PRE-mRNA-splicing facto 99.5 8.9E-15 3.1E-19 104.2 7.3 65 2-74 20-85 (85)
327 1fj7_A Nucleolin RBD1, protein 99.5 8E-16 2.7E-20 113.5 1.8 70 2-76 25-95 (101)
328 1x4g_A Nucleolysin TIAR; struc 99.5 1.1E-14 3.8E-19 108.9 7.8 67 2-76 33-99 (109)
329 2lcw_A RNA-binding protein FUS 99.3 4.2E-16 1.4E-20 118.1 0.0 74 2-78 15-97 (116)
330 2xs2_A Deleted in azoospermia- 99.5 4.5E-15 1.5E-19 109.7 5.4 71 2-77 17-87 (102)
331 1x4c_A Splicing factor, argini 99.5 1.2E-14 4.1E-19 108.5 7.7 68 2-76 23-93 (108)
332 2e5j_A Methenyltetrahydrofolat 99.5 1E-14 3.6E-19 106.6 7.2 68 2-76 27-94 (97)
333 2fc8_A NCL protein; structure 99.5 1.8E-14 6.3E-19 106.3 8.4 69 2-76 23-92 (102)
334 2jvo_A Nucleolar protein 3; nu 99.5 1.3E-14 4.5E-19 108.2 7.5 67 2-78 39-105 (108)
335 2xnq_A Nuclear polyadenylated 99.5 3.2E-14 1.1E-18 104.0 8.7 65 2-76 30-95 (97)
336 3d2w_A TAR DNA-binding protein 99.5 1.6E-14 5.6E-19 103.7 6.9 68 2-78 19-86 (89)
337 2cpx_A Hypothetical protein FL 99.5 1.4E-14 4.8E-19 109.4 6.8 72 2-76 33-105 (115)
338 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.6E-14 8.9E-19 104.5 7.9 64 4-76 27-90 (100)
339 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.1E-13 3.9E-18 101.1 11.3 77 241-324 10-93 (100)
340 2g4b_A Splicing factor U2AF 65 99.5 2.5E-14 8.6E-19 115.7 8.7 70 2-74 102-172 (172)
341 1fjc_A Nucleolin RBD2, protein 99.5 7.2E-15 2.4E-19 107.3 4.9 68 2-76 24-91 (96)
342 2i2y_A Fusion protein consists 99.5 2E-14 6.7E-19 114.0 7.5 68 2-76 81-148 (150)
343 2kvi_A Nuclear polyadenylated 99.5 1.9E-14 6.4E-19 105.1 6.8 66 2-77 18-84 (96)
344 2dgt_A RNA-binding protein 30; 99.5 3.4E-14 1.2E-18 102.8 8.2 65 2-76 18-82 (92)
345 2diu_A KIAA0430 protein; struc 99.5 3E-14 1E-18 101.0 7.5 63 2-76 17-84 (96)
346 3v4m_A Splicing factor U2AF 65 99.5 1.1E-14 3.9E-19 107.7 5.6 67 7-76 28-97 (105)
347 3s6e_A RNA-binding protein 39; 99.5 7.7E-14 2.6E-18 104.5 10.1 77 239-319 5-91 (114)
348 3sde_A Paraspeckle component 1 99.5 7.1E-14 2.4E-18 121.2 11.3 78 238-321 19-96 (261)
349 3egn_A RNA-binding protein 40; 99.5 6.5E-15 2.2E-19 115.8 4.1 74 2-78 53-132 (143)
350 1wg1_A KIAA1579 protein, homol 99.5 3.3E-14 1.1E-18 102.0 7.1 66 2-76 13-78 (88)
351 2dnp_A RNA-binding protein 14; 99.5 4.3E-14 1.5E-18 101.8 7.7 65 2-76 17-81 (90)
352 2dgu_A Heterogeneous nuclear r 99.5 4.2E-14 1.4E-18 104.6 7.4 65 2-76 19-83 (103)
353 2cqh_A IGF-II mRNA-binding pro 99.5 2.4E-14 8.2E-19 103.8 5.6 66 2-76 16-83 (93)
354 3beg_B Splicing factor, argini 99.5 6.4E-14 2.2E-18 105.7 8.0 67 2-75 24-93 (115)
355 2yh0_A Splicing factor U2AF 65 99.5 9.6E-14 3.3E-18 114.9 9.8 75 240-321 3-88 (198)
356 1x5p_A Negative elongation fac 99.5 5.8E-14 2E-18 102.6 7.6 65 4-76 23-87 (97)
357 1wf1_A RNA-binding protein RAL 99.5 4.3E-14 1.5E-18 105.8 6.9 65 2-76 35-100 (110)
358 2e44_A Insulin-like growth fac 99.5 1.1E-13 3.7E-18 100.9 7.3 69 2-76 23-92 (96)
359 2voo_A Lupus LA protein; RNA-b 99.5 1.6E-13 5.5E-18 113.2 8.7 71 2-76 117-187 (193)
360 3ue2_A Poly(U)-binding-splicin 99.5 1E-13 3.5E-18 104.6 6.7 66 7-75 38-108 (118)
361 2bz2_A Negative elongation fac 99.5 1.8E-13 6.1E-18 104.1 8.1 66 4-77 47-112 (121)
362 2dnl_A Cytoplasmic polyadenyla 99.4 1.1E-13 3.6E-18 104.4 6.4 54 2-56 16-73 (114)
363 3pgw_S U1-70K; protein-RNA com 99.4 1.5E-13 5.1E-18 127.2 8.5 72 2-76 110-182 (437)
364 2cpd_A Apobec-1 stimulating pr 99.4 2.6E-13 8.9E-18 99.5 8.1 65 2-76 23-89 (99)
365 3tht_A Alkylated DNA repair pr 99.4 3.2E-13 1.1E-17 120.1 9.9 77 237-319 14-97 (345)
366 2e5g_A U6 snRNA-specific termi 99.4 1.9E-13 6.5E-18 99.2 6.5 66 2-76 16-82 (94)
367 2dit_A HIV TAT specific factor 99.4 2.1E-13 7E-18 102.4 6.2 64 7-76 39-102 (112)
368 3u1l_A PRE-mRNA-splicing facto 99.4 5.4E-13 1.8E-17 112.7 7.7 67 7-80 156-233 (240)
369 2hzc_A Splicing factor U2AF 65 99.4 5.2E-13 1.8E-17 95.3 6.5 62 2-72 14-86 (87)
370 3s6e_A RNA-binding protein 39; 99.4 5.6E-13 1.9E-17 99.8 6.7 64 7-76 30-93 (114)
371 3tht_A Alkylated DNA repair pr 99.3 1.4E-12 4.7E-17 116.0 7.3 69 2-75 28-98 (345)
372 1wf0_A TDP-43, TAR DNA-binding 99.3 9.2E-13 3.2E-17 94.3 5.0 66 2-76 13-78 (88)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 7.9E-12 2.7E-16 87.7 8.4 75 238-321 4-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.3 1.1E-11 3.8E-16 92.9 9.5 75 238-318 15-93 (121)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 1.4E-10 4.7E-15 81.8 7.4 72 238-318 12-92 (95)
376 3dxb_A Thioredoxin N-terminall 99.1 1.7E-10 5.8E-15 97.3 8.3 79 241-319 124-211 (222)
377 3dxb_A Thioredoxin N-terminall 99.1 3.2E-10 1.1E-14 95.6 8.2 67 6-75 141-212 (222)
378 2dnr_A Synaptojanin-1; RRM dom 99.0 7.1E-10 2.4E-14 77.8 6.1 57 9-76 30-86 (91)
379 1owx_A Lupus LA protein, SS-B, 98.9 1.3E-08 4.6E-13 76.1 9.5 68 2-76 26-96 (121)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 9.9E-09 3.4E-13 72.3 5.5 55 9-74 39-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.7 1.6E-07 5.4E-12 67.5 9.4 70 241-316 21-95 (117)
382 1wey_A Calcipressin 1; structu 98.3 2.3E-06 8E-11 61.3 8.2 76 241-322 5-85 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.9 4.1E-05 1.4E-09 55.0 6.7 67 2-76 29-100 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.9 0.00027 9.3E-09 50.3 10.9 77 239-324 6-87 (104)
385 1whv_A Poly(A)-specific ribonu 97.8 0.00019 6.5E-09 50.5 8.9 56 240-304 15-70 (100)
386 1uw4_A UPF3X; nonsense mediate 97.8 0.00019 6.5E-09 50.5 9.0 67 242-308 2-70 (91)
387 1wwh_A Nucleoporin 35, nucleop 97.5 0.00043 1.5E-08 51.0 7.5 72 238-317 21-93 (119)
388 3ctr_A Poly(A)-specific ribonu 97.3 0.00042 1.4E-08 48.9 5.6 54 242-304 7-60 (101)
389 1uw4_A UPF3X; nonsense mediate 97.1 0.0023 7.8E-08 45.0 7.4 72 2-73 9-85 (91)
390 1whv_A Poly(A)-specific ribonu 97.0 0.0015 5E-08 46.0 6.1 48 2-56 23-70 (100)
391 1wey_A Calcipressin 1; structu 97.0 0.0012 4.2E-08 47.2 5.5 59 9-75 25-83 (104)
392 1wwh_A Nucleoporin 35, nucleop 97.0 0.0026 9E-08 46.8 7.3 61 8-76 37-97 (119)
393 2l08_A Regulator of nonsense t 96.8 0.0013 4.3E-08 46.6 4.0 68 241-308 9-78 (97)
394 3p3d_A Nucleoporin 53; structu 96.4 0.0026 8.9E-08 47.5 3.9 75 242-318 8-96 (132)
395 2dhx_A Poly (ADP-ribose) polym 96.4 0.017 5.9E-07 41.1 7.8 63 2-75 16-83 (104)
396 3ctr_A Poly(A)-specific ribonu 96.3 0.0063 2.2E-07 42.9 5.0 48 2-56 13-60 (101)
397 2l08_A Regulator of nonsense t 95.8 0.0086 2.9E-07 42.3 3.7 72 2-73 17-93 (97)
398 3pq1_A Poly(A) RNA polymerase; 95.7 0.0068 2.3E-07 55.7 3.7 55 242-302 54-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 95.4 0.0061 2.1E-07 56.0 2.2 47 3-53 61-107 (464)
400 3p3d_A Nucleoporin 53; structu 93.6 0.057 2E-06 40.2 3.6 64 8-75 20-98 (132)
401 3d45_A Poly(A)-specific ribonu 91.2 0.7 2.4E-05 43.1 8.5 55 241-304 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 84.4 2 6.7E-05 40.1 6.9 49 2-57 447-495 (507)
403 2g0c_A ATP-dependent RNA helic 66.2 14 0.00047 24.1 5.4 59 252-319 12-75 (76)
404 3j21_T 50S ribosomal protein L 56.0 27 0.00093 23.7 5.3 50 3-54 31-82 (86)
405 4eyt_A Telomerase associated p 54.8 47 0.0016 22.5 8.6 57 240-304 11-67 (129)
406 4e8u_A Putative uncharacterize 51.7 37 0.0013 26.4 6.1 58 241-301 12-81 (172)
407 3ts2_A Protein LIN-28 homolog 51.5 3.8 0.00013 31.3 0.5 29 8-43 1-29 (148)
408 2lfv_A Protein DAMX; cell divi 50.3 4.7 0.00016 28.8 0.0 52 5-57 33-86 (106)
409 4e8u_A Putative uncharacterize 43.8 25 0.00087 27.3 4.1 39 6-46 33-73 (172)
410 3mfb_A Uncharacterized protein 41.8 34 0.0012 26.1 4.5 35 6-40 3-41 (157)
411 1xn9_A 30S ribosomal protein S 40.0 54 0.0019 23.0 5.0 46 5-51 29-80 (101)
412 3lpe_A Putative transcription 38.7 57 0.002 22.2 4.9 34 21-58 40-73 (92)
413 2v94_A RPS24, 30S ribosomal pr 37.3 71 0.0024 22.6 5.3 45 5-50 38-88 (107)
414 1ywx_A 30S ribosomal protein S 37.1 64 0.0022 22.6 4.9 45 5-50 29-79 (102)
415 1vq8_S 50S ribosomal protein L 37.0 43 0.0015 22.6 3.9 47 3-51 30-78 (85)
416 1wvf_A 4-cresol dehydrogenase 34.4 24 0.00081 32.8 3.1 44 10-53 217-262 (520)
417 4bby_A Alkyldihydroxyacetoneph 33.7 36 0.0012 32.7 4.3 48 10-57 359-410 (658)
418 4bby_A Alkyldihydroxyacetoneph 29.6 42 0.0014 32.2 4.0 55 249-304 351-409 (658)
419 3u5e_X 60S ribosomal protein L 28.5 92 0.0031 23.3 4.8 51 2-54 86-138 (142)
420 4a17_R RPL23A, 60S ribosomal p 27.8 92 0.0031 23.5 4.7 51 2-54 94-146 (150)
421 2i9x_A Putative septation prot 27.8 78 0.0027 21.5 4.0 25 20-44 5-30 (87)
422 2e5p_A Protein PHF1, PHD finge 25.7 25 0.00084 22.5 1.1 11 35-45 37-47 (68)
423 3h7h_B Transcription elongatio 25.1 76 0.0026 22.4 3.7 35 20-58 40-74 (106)
424 2ia9_A Putative septation prot 24.7 92 0.0032 21.7 4.0 46 20-73 5-51 (100)
425 2m0o_A PHD finger protein 1; t 23.9 27 0.00094 22.9 1.1 12 35-46 54-65 (79)
426 2i9z_A Putative septation prot 23.8 99 0.0034 21.8 4.0 46 20-73 5-51 (105)
427 1wvf_A 4-cresol dehydrogenase 23.8 54 0.0019 30.3 3.5 43 257-300 217-261 (520)
428 2zkr_s 60S ribosomal protein L 23.0 1.2E+02 0.004 23.1 4.5 50 2-53 100-151 (156)
429 2g1d_A 30S ribosomal protein S 22.5 62 0.0021 22.5 2.7 44 5-49 30-79 (98)
430 2xzm_P RPS24E; ribosome, trans 22.2 1.5E+02 0.0051 22.3 5.0 46 4-50 31-82 (149)
431 3pm9_A Putative oxidoreductase 22.2 65 0.0022 29.5 3.7 47 10-56 202-252 (476)
432 1ytr_A Bacteriocin plantaricin 21.1 50 0.0017 16.0 1.4 11 9-19 15-25 (26)
433 3fry_A Probable copper-exporti 20.4 1.6E+02 0.0055 18.1 6.4 55 241-302 6-60 (73)
434 3iz5_X 60S ribosomal protein L 20.2 91 0.0031 23.6 3.4 48 3-52 97-146 (152)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.3e-34 Score=244.80 Aligned_cols=159 Identities=30% Similarity=0.502 Sum_probs=143.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++||++|+++|++||+|++|+|++|+ +|+++|||||+|.+.++|++|++.+||.. +.| +.|++.++.......
T Consensus 23 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g--~~i~~~~~~~~~~~~ 99 (213)
T 4f02_A 23 LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKG--KPVRIMWSQRDPSLR 99 (213)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEECCCCTHHH
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCC--ccccccccccccccc
Confidence 89999999999999999999999999996 89999999999999999999999999976 445 669999987653322
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
..
T Consensus 100 ~~------------------------------------------------------------------------------ 101 (213)
T 4f02_A 100 KS------------------------------------------------------------------------------ 101 (213)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 22
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
.
T Consensus 102 -------------------------------------------------------------------------------~ 102 (213)
T 4f02_A 102 -------------------------------------------------------------------------------G 102 (213)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
..+|||+|||+.+++++|+++|++||.|.+++|+.+. +.++|||||+|.+.++|.+|++.|||..|+|++|+|+++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3689999999999999999999999999999999985 55899999999999999999999999999999999999886
Q ss_pred CC
Q 020372 321 NK 322 (327)
Q Consensus 321 ~~ 322 (327)
++
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 2
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4e-34 Score=242.17 Aligned_cols=173 Identities=29% Similarity=0.443 Sum_probs=148.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++||++|+++|+.||.|.+|++++++ +|+++|||||+|.+.++|.+|++.|||.. +.| +.|+|.++.......
T Consensus 36 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~l~v~~~~~~~~~~ 112 (216)
T 2qfj_A 36 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGG--RNIKVGRPSNIGQAQ 112 (216)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC---CCCEEECCSCCGGGH
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCC--eeEEEecCCCccccc
Confidence 89999999999999999999999999996 89999999999999999999999999976 455 569999887654322
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
........
T Consensus 113 ~~~~~~~~------------------------------------------------------------------------ 120 (216)
T 2qfj_A 113 PIIDQLAE------------------------------------------------------------------------ 120 (216)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred hhhhhhhc------------------------------------------------------------------------
Confidence 21110000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
....
T Consensus 121 ----------------------------------------------------------------------------~~~~ 124 (216)
T 2qfj_A 121 ----------------------------------------------------------------------------EARA 124 (216)
T ss_dssp ----------------------------------------------------------------------------HHTT
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 0113
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
.++|||+|||..+++++|+++|++||.|.++++..++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|+++++
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020372 321 NKQNK 325 (327)
Q Consensus 321 ~~~~~ 325 (327)
+....
T Consensus 205 ~~~~~ 209 (216)
T 2qfj_A 205 PPMPL 209 (216)
T ss_dssp CSSTT
T ss_pred CCCCC
Confidence 76543
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-34 Score=231.82 Aligned_cols=158 Identities=31% Similarity=0.511 Sum_probs=143.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||+++|+++|+++|++||.|.+|+++++++|+++|||||+|.+.++|.+|++.|+|..+ .| +.|+|.++.....
T Consensus 8 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g--~~i~v~~~~~~~~--- 81 (166)
T 3md3_A 8 LDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI-EN--NIVKINWAFQSQQ--- 81 (166)
T ss_dssp EETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECCCCCC---
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc-CC--CeeEEEEcCCCCC---
Confidence 78999999999999999999999999999999999999999999999999999999875 44 6699999865300
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
T Consensus 82 -------------------------------------------------------------------------------- 81 (166)
T 3md3_A 82 -------------------------------------------------------------------------------- 81 (166)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
....+.
T Consensus 82 --------------------------------------------------------------------------~~~~~~ 87 (166)
T 3md3_A 82 --------------------------------------------------------------------------SSSDDT 87 (166)
T ss_dssp --------------------------------------------------------------------------CCCTTC
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 012246
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|+..|||..++|++|+|+|++
T Consensus 88 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 88 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred ceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 899999999999999999999999999999999998899999999999999999999999999999999999999986
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.7e-33 Score=228.79 Aligned_cols=155 Identities=28% Similarity=0.507 Sum_probs=142.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++|+++|+++|+.||.|.+|++++++ +|+++|||||+|.+.++|.+|++.|+|..+ .| +.|+|.++....
T Consensus 11 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g--~~l~v~~~~~~~--- 84 (168)
T 1b7f_A 11 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV-RN--KRLKVSYARPGG--- 84 (168)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECCCCS---
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe-CC--cEEEEEecCCCc---
Confidence 89999999999999999999999999996 899999999999999999999999999875 45 669999986530
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
T Consensus 85 -------------------------------------------------------------------------------- 84 (168)
T 1b7f_A 85 -------------------------------------------------------------------------------- 84 (168)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
....
T Consensus 85 ----------------------------------------------------------------------------~~~~ 88 (168)
T 1b7f_A 85 ----------------------------------------------------------------------------ESIK 88 (168)
T ss_dssp ----------------------------------------------------------------------------STTT
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 0123
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 318 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~ 318 (327)
.++|||+|||..+++++|+++|++||.|.++.+..++.+++++|||||+|.+.++|.+|+..|||..+.| ++|+|+||
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 5799999999999999999999999999999999998899999999999999999999999999999987 99999985
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.6e-33 Score=233.58 Aligned_cols=166 Identities=19% Similarity=0.375 Sum_probs=139.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++||++|+++|+.||.|.+|++++++ +|+++|||||+|.+.++|++|++. +|.. +.| +.|.|.++.......
T Consensus 21 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~-~~g--~~l~v~~~~~~~~~~ 96 (196)
T 1l3k_A 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK-VDG--RVVEPKRAVSREDSQ 96 (196)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE-ETT--EECEEEECCC-----
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE-ECC--EEeeeecccCccccc
Confidence 89999999999999999999999999996 799999999999999999999976 7765 555 669999987652211
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
..
T Consensus 97 ~~------------------------------------------------------------------------------ 98 (196)
T 1l3k_A 97 RP------------------------------------------------------------------------------ 98 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
.....
T Consensus 99 ---------------------------------------------------------------------------~~~~~ 103 (196)
T 1l3k_A 99 ---------------------------------------------------------------------------GAHLT 103 (196)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 00223
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
.++|||+|||+.+++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|.|+++.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999997 89999999999999998
Q ss_pred CCCCC
Q 020372 321 NKQNK 325 (327)
Q Consensus 321 ~~~~~ 325 (327)
+...+
T Consensus 183 k~~~~ 187 (196)
T 1l3k_A 183 KQEMA 187 (196)
T ss_dssp -----
T ss_pred hhHhc
Confidence 86553
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.5e-33 Score=226.55 Aligned_cols=155 Identities=28% Similarity=0.558 Sum_probs=140.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++|+++|+++|+.||.|.+|++++++ +|+++|||||+|.+.++|.+|++.|+|..+ .| +.|+|.++.+...
T Consensus 10 lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g--~~l~v~~~~~~~~-- 84 (167)
T 1fxl_A 10 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-QT--KTIKVSYARPSSA-- 84 (167)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECCCCCG--
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc-CC--ceEEEEecCCCcc--
Confidence 89999999999999999999999999997 999999999999999999999999999875 44 6699999865300
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
T Consensus 85 -------------------------------------------------------------------------------- 84 (167)
T 1fxl_A 85 -------------------------------------------------------------------------------- 84 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
...
T Consensus 85 -----------------------------------------------------------------------------~~~ 87 (167)
T 1fxl_A 85 -----------------------------------------------------------------------------SIR 87 (167)
T ss_dssp -----------------------------------------------------------------------------GGT
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 113
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcE--EEEEEc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK--LKVQLK 318 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~--l~v~~~ 318 (327)
.++|||+|||..+++++|+++|++||.|..+++..++.+|+++|||||+|.+.++|.+|++.|||..+.|+. |+|+||
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 578999999999999999999999999999999999889999999999999999999999999999999965 888775
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.8e-33 Score=228.15 Aligned_cols=159 Identities=29% Similarity=0.524 Sum_probs=143.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCC---CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g---~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 78 (327)
||+++||++|+++|++||.|.+|++++++.+ +++|||||+|.+.++|++|++.|+|..+..++.+.+.+.++.....
T Consensus 11 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 11 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc
Confidence 8999999999999999999999999999744 8999999999999999999999999988888778899998865400
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 020372 79 RQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRG 158 (327)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (327)
T Consensus 91 -------------------------------------------------------------------------------- 90 (175)
T 3nmr_A 91 -------------------------------------------------------------------------------- 90 (175)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 159 ASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEG 238 (327)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (327)
..
T Consensus 91 ------------------------------------------------------------------------------~~ 92 (175)
T 3nmr_A 91 ------------------------------------------------------------------------------NA 92 (175)
T ss_dssp ------------------------------------------------------------------------------SC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 01
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC---CcEEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG---GKKLKV 315 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v 315 (327)
...++|||+|||+.+++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|.+|++.|||..+. +++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 135789999999999999999999999999999999997 7999999999999999999999999998775 499999
Q ss_pred EEcc
Q 020372 316 QLKR 319 (327)
Q Consensus 316 ~~~~ 319 (327)
+|+.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4e-33 Score=226.45 Aligned_cols=156 Identities=23% Similarity=0.445 Sum_probs=140.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++|+++|+++|+.||.|.+|++++++ +|+++|||||+|.+.++|++|++. +. .+.| +.|.|.++..+....
T Consensus 11 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g--~~i~v~~~~~~~~~~ 85 (167)
T 2cjk_A 11 LNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QH-ILDG--KVIDPKRAIPRDEQD 85 (167)
T ss_dssp CCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CC-EETT--EECCCEECCCHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cc-ccCC--eEcccccccchhhcc
Confidence 89999999999999999999999999996 899999999999999999999985 33 3555 558888887653211
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
T Consensus 86 -------------------------------------------------------------------------------- 85 (167)
T 2cjk_A 86 -------------------------------------------------------------------------------- 85 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
.
T Consensus 86 -------------------------------------------------------------------------------~ 86 (167)
T 2cjk_A 86 -------------------------------------------------------------------------------K 86 (167)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
.++|||+|||+.+++++|+++|++||.|.++++..++.+|+++|||||+|.+.++|.+|++ ++|..++|++|+|+++++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 4689999999999999999999999999999999998899999999999999999999999 799999999999999987
Q ss_pred CC
Q 020372 321 NK 322 (327)
Q Consensus 321 ~~ 322 (327)
+.
T Consensus 166 k~ 167 (167)
T 2cjk_A 166 RH 167 (167)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 9
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=5.1e-31 Score=232.27 Aligned_cols=78 Identities=21% Similarity=0.445 Sum_probs=72.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC-CcEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKV 315 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v 315 (327)
...+.++|||+|||..+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 35567899999999999999999999999999999998654 589999999999999999999999999 999999
Q ss_pred EEcc
Q 020372 316 QLKR 319 (327)
Q Consensus 316 ~~~~ 319 (327)
+|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=4.8e-31 Score=232.69 Aligned_cols=163 Identities=23% Similarity=0.345 Sum_probs=146.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|.+|++.|+|..+ .| +.|+|.++..+...
T Consensus 103 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g--~~i~v~~a~~~~~~- 178 (284)
T 3smz_A 103 LPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL-GP--RTLYVHWTDAGQLT- 178 (284)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECCGGGCC-
T ss_pred CCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEEEEEECCCCCCC-
Confidence 89999999999999999999999999996 899999999999999999999999999764 55 67999999764100
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
T Consensus 179 -------------------------------------------------------------------------------- 178 (284)
T 3smz_A 179 -------------------------------------------------------------------------------- 178 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
.....
T Consensus 179 ---------------------------------------------------------------------------~~~~~ 183 (284)
T 3smz_A 179 ---------------------------------------------------------------------------PALLH 183 (284)
T ss_dssp ---------------------------------------------------------------------------TTTTS
T ss_pred ---------------------------------------------------------------------------cccCC
Confidence 00124
Q ss_pred CceEEEeCCCCCC-CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 241 GANLFIYHIPQEF-GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 241 ~~~l~v~nLp~~~-t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
.++|||+|||+.+ ++++|+++|++||.|.+++|+.++ +|+++|+|||+|.+.++|.+|+..|||..++|+.|+|++++
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 6899999999995 999999999999999999999997 89999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020372 320 DNKQN 324 (327)
Q Consensus 320 ~~~~~ 324 (327)
++..+
T Consensus 263 ~~~~~ 267 (284)
T 3smz_A 263 PGPPG 267 (284)
T ss_dssp SSSCH
T ss_pred CCCcc
Confidence 87653
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.3e-30 Score=212.53 Aligned_cols=149 Identities=30% Similarity=0.479 Sum_probs=132.6
Q ss_pred CCcCCCHHHHHHHhccc----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEE
Q 020372 2 LPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 70 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~----G-------~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 70 (327)
||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .|||..+ .| +.|+|
T Consensus 12 Lp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~-~g--~~i~v 82 (172)
T 2g4b_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIF-QG--QSLKI 82 (172)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEE-TT--EECEE
T ss_pred CCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEe-cC--ceeee
Confidence 89999999999999999 6 777777755 4899999999999999999 8999874 55 56999
Q ss_pred EeCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 020372 71 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 150 (327)
Q Consensus 71 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (327)
.++....
T Consensus 83 ~~~~~~~------------------------------------------------------------------------- 89 (172)
T 2g4b_A 83 RRPHDYQ------------------------------------------------------------------------- 89 (172)
T ss_dssp ECCSSCC-------------------------------------------------------------------------
T ss_pred cCCcccC-------------------------------------------------------------------------
Confidence 8765430
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 151 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 230 (327)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (327)
T Consensus 90 -------------------------------------------------------------------------------- 89 (172)
T 2g4b_A 90 -------------------------------------------------------------------------------- 89 (172)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC
Q 020372 231 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 310 (327)
Q Consensus 231 ~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g 310 (327)
.....++|||+|||..+++++|+++|++||.|.++++..++.+|+++|||||+|.+.++|.+|++.|||..++|
T Consensus 90 ------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 90 ------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp ------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred ------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 01125789999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cEEEEEEc
Q 020372 311 KKLKVQLK 318 (327)
Q Consensus 311 ~~l~v~~~ 318 (327)
++|+|++|
T Consensus 164 ~~l~V~~A 171 (172)
T 2g4b_A 164 KKLLVQRA 171 (172)
T ss_dssp EECEEEEC
T ss_pred eEEEEEeC
Confidence 99999986
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=3.2e-30 Score=215.16 Aligned_cols=86 Identities=34% Similarity=0.495 Sum_probs=81.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
...++|||+|||+.+++++|+++|++||.|.++++..++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020372 319 RDNKQN 324 (327)
Q Consensus 319 ~~~~~~ 324 (327)
+++...
T Consensus 192 ~~~~~~ 197 (198)
T 2yh0_A 192 SVGAKN 197 (198)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.6e-31 Score=232.32 Aligned_cols=165 Identities=21% Similarity=0.385 Sum_probs=137.2
Q ss_pred CCcCCCHHHHHHHhcccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++|+++|+++|+.|| .|.+|.++++++|+++|||||+|.+.++|.+|++.|+|..+ .| +.|+|.++.+.....
T Consensus 125 lp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~v~~a~~~~~~~ 201 (292)
T 2ghp_A 125 FPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI-EG--YTLVTKVSNPLEKSK 201 (292)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEE-TT--EECEEEECCCC----
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEEEEEECCCCcccc
Confidence 899999999999999999 99999999998899999999999999999999999999875 55 679999997653211
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
..
T Consensus 202 ~~------------------------------------------------------------------------------ 203 (292)
T 2ghp_A 202 RT------------------------------------------------------------------------------ 203 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
......
T Consensus 204 --------------------------------------------------------------------------~~~~~~ 209 (292)
T 2ghp_A 204 --------------------------------------------------------------------------DSATLE 209 (292)
T ss_dssp -----------------------------------------------------------------------------CCT
T ss_pred --------------------------------------------------------------------------cccCCC
Confidence 001234
Q ss_pred CceEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 241 GANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKA-TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 241 ~~~l~v~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~-~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.++|||+|||+. +++++|+++|++||.|.+++|+.+.. +|+++|||||+|.+.++|.+|+ .|||..|+|+.|+|.++
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEe
Confidence 689999999999 99999999999999999999999874 4999999999999999999999 99999999999999999
Q ss_pred cCCC
Q 020372 319 RDNK 322 (327)
Q Consensus 319 ~~~~ 322 (327)
+++.
T Consensus 289 ~~k~ 292 (292)
T 2ghp_A 289 DKKP 292 (292)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8763
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.4e-30 Score=218.09 Aligned_cols=186 Identities=18% Similarity=0.307 Sum_probs=133.3
Q ss_pred CC-cCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp-~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
|| +++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|++||+.|||..+. | ++|+|.+++.+..
T Consensus 12 L~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~-g--~~l~v~~s~~~~~-- 82 (205)
T 3tyt_A 12 LDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMF-G--QKMNVCVSKQPAI-- 82 (205)
T ss_dssp CCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEET-T--EECEEEECSCSCC--
T ss_pred CCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEEC-C--ceEEEEEccCCcc--
Confidence 77 89999999999999999999999887 3799999999999999999999998754 4 6799999975410
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
.+.. .. . ... +
T Consensus 83 -------------~p~~----~~--~-~~~-----------------~-------------------------------- 93 (205)
T 3tyt_A 83 -------------MPGQ----SY--G-LED-----------------G-------------------------------- 93 (205)
T ss_dssp -------------CCCS----CC--B-CTT-----------------S--------------------------------
T ss_pred -------------CCCc----cc--c-ccc-----------------C--------------------------------
Confidence 0000 00 0 000 0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
.+. . .. +... .. ....... .........+
T Consensus 94 -------~~~-------------~-----~~----~~~~-----~~----~r~~~~~-------------~~~~~~~~~p 122 (205)
T 3tyt_A 94 -------SCS-------------Y-----KD----FSES-----RN----NRFSTPE-------------QAAKNRIQHP 122 (205)
T ss_dssp -------CBS-------------E-----EE----CTTC-----TT----CSCSSHH-------------HHTTSCCCCC
T ss_pred -------Ccc-------------c-----cc----cCCC-----cc----ccccCcc-------------cccccccCCC
Confidence 000 0 00 0000 00 0000000 0000011345
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCe--eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCc----EEE
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRV--LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK----KLK 314 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i--~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~----~l~ 314 (327)
+++|||+|||+.+++++|+++|++||.| .+++++.++ +.++|+|||+|.+.++|.+|+..|||..|.|+ ++.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 7899999999999999999999999999 899988774 55679999999999999999999999999886 577
Q ss_pred EEEc
Q 020372 315 VQLK 318 (327)
Q Consensus 315 v~~~ 318 (327)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=7.4e-32 Score=220.78 Aligned_cols=155 Identities=17% Similarity=0.278 Sum_probs=133.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||+++|+++|+++|+.||.+..+.+....+|+++|||||+|.+.++|.+|+ .|||..+. | +.|+|.++..+..
T Consensus 21 Lp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g--~~l~v~~~~~~~~--- 93 (175)
T 1fje_B 21 LNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF-G--NEIKLEKPKGRDS--- 93 (175)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET-T--EEEEEECCCCSSC---
T ss_pred CCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC-C--eEEEEecCCCccc---
Confidence 899999999999999999887733333358899999999999999999999 59997754 5 6799999866400
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
T Consensus 94 -------------------------------------------------------------------------------- 93 (175)
T 1fje_B 94 -------------------------------------------------------------------------------- 93 (175)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
......
T Consensus 94 --------------------------------------------------------------------------~~~~~~ 99 (175)
T 1fje_B 94 --------------------------------------------------------------------------KKVRAA 99 (175)
T ss_dssp --------------------------------------------------------------------------STTGGG
T ss_pred --------------------------------------------------------------------------cccccC
Confidence 001235
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
++|||+|||+.+++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|+..|||..|+|+.|+|++++++
T Consensus 100 ~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 100 RTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 899999999999999999999999988766 358999999999999999999999999999999999999999876
Q ss_pred C
Q 020372 322 K 322 (327)
Q Consensus 322 ~ 322 (327)
.
T Consensus 175 ~ 175 (175)
T 1fje_B 175 G 175 (175)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=4.6e-29 Score=213.10 Aligned_cols=184 Identities=22% Similarity=0.334 Sum_probs=135.9
Q ss_pred CCc-CCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~-~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+ ++|+++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+....
T Consensus 42 Lp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~-~g--~~l~v~~a~~~~~~~ 114 (229)
T 2adc_A 42 LNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKL-HG--KPIRITLSKHQNVQL 114 (229)
T ss_dssp CCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBC-SS--SBCEEECCSCCCCCC
T ss_pred CCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeE-CC--eEEEEEEecCccccC
Confidence 788 99999999999999999999999985 78999999999999999999999875 45 669999997641100
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
.+ . . .... ..
T Consensus 115 ~~-----------~-~------~~~~----------------------------------~~------------------ 124 (229)
T 2adc_A 115 PR-----------E-G------QEDQ----------------------------------GL------------------ 124 (229)
T ss_dssp CC-----------S-S------SSTT----------------------------------TT------------------
T ss_pred cc-----------c-c------cccc----------------------------------cc------------------
Confidence 00 0 0 0000 00
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
... + .... . ...... ..........+
T Consensus 125 --------~~~------------~------------~~~~-----~----~~~~~~-------------~~~~~~~~~~~ 150 (229)
T 2adc_A 125 --------TKD------------Y------------GNSP-----L----HRFKKP-------------GSKNFQNIFPP 150 (229)
T ss_dssp --------EEE------------C------------TTCS-----S----CCCCST-------------TSGGGTTCCCS
T ss_pred --------ccc------------c------------ccCc-----c----cccCCc-------------cccccccCCCC
Confidence 000 0 0000 0 000000 00000011345
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC-CcEEEEEEc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKVQLK 318 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~~ 318 (327)
+++|||+|||..+++++|+++|++|| .|..++++.+ .+|||||+|.+.++|.+|+..|||..++ |+.|+|+|+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 79999999999999999999999999 9999999753 3689999999999999999999999999 999999998
Q ss_pred cCC
Q 020372 319 RDN 321 (327)
Q Consensus 319 ~~~ 321 (327)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.4e-29 Score=219.52 Aligned_cols=147 Identities=29% Similarity=0.394 Sum_probs=135.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||+++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|++.|||..+ .| +.|+|.++..
T Consensus 30 Lp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~-~g--~~i~v~~~~~------ 94 (284)
T 3smz_A 30 LPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRL-RE--RELSVQLQPT------ 94 (284)
T ss_dssp CCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECCC------
T ss_pred CCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCee-CC--eEEEEEecCC------
Confidence 899999999999999999 999988 55689999999999999999999999874 45 6689986421
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
T Consensus 95 -------------------------------------------------------------------------------- 94 (284)
T 3smz_A 95 -------------------------------------------------------------------------------- 94 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.
T Consensus 95 -------------------------------------------------------------------------------~ 95 (284)
T 3smz_A 95 -------------------------------------------------------------------------------D 95 (284)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------C
Confidence 3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|+..|+|..++|+.|+|.++.++
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999998765
Q ss_pred C
Q 020372 322 K 322 (327)
Q Consensus 322 ~ 322 (327)
.
T Consensus 176 ~ 176 (284)
T 3smz_A 176 Q 176 (284)
T ss_dssp G
T ss_pred C
Confidence 4
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=3.9e-29 Score=208.71 Aligned_cols=184 Identities=22% Similarity=0.350 Sum_probs=136.2
Q ss_pred CCc-CCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~-~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+ ++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|||..+ .| +.|+|.++......
T Consensus 11 lp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~-~g--~~l~v~~a~~~~~~- 82 (198)
T 1qm9_A 11 LNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKL-HG--KPIRITLSKHQNVQ- 82 (198)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCC-SS--CCCEEEECCCCSCC-
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCee-cC--eEEEEEEecCCCcC-
Confidence 788 99999999999999999999999885 78999999999999999999999874 45 56999999765100
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 020372 81 ARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 160 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (327)
.+.. ...... .
T Consensus 83 -------------~~~~----~~~~~~---------------~------------------------------------- 93 (198)
T 1qm9_A 83 -------------LPRE----GQEDQG---------------L------------------------------------- 93 (198)
T ss_dssp -------------CSSS----SSSSSS---------------C-------------------------------------
T ss_pred -------------CCCc----CCcccc---------------c-------------------------------------
Confidence 0000 000000 0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 161 PDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPP 240 (327)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
... +.+... ...... ..........+
T Consensus 94 --------~~~-------~~~~~~--------------------------~r~~~~-------------~~~~~~~~~~~ 119 (198)
T 1qm9_A 94 --------TKD-------YGNSPL--------------------------HRFKKP-------------GSKNFQNIFPP 119 (198)
T ss_dssp --------EEE-------SSCCCT--------------------------TSSSSC-------------CCCCCSCCCCC
T ss_pred --------ccc-------ccCCch--------------------------hhccCc-------------cccccccCCCC
Confidence 000 000000 000000 00000011345
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC-CcEEEEEEc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKVQLK 318 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~~ 318 (327)
+++|||+|||..+++++|+++|++|| .|.+++++.+ .+|+|||+|.+.++|.+|+..|||..++ |+.|+|+|+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 79999999999999999999999999 9999999764 2789999999999999999999999999 999999998
Q ss_pred cCC
Q 020372 319 RDN 321 (327)
Q Consensus 319 ~~~ 321 (327)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=6e-29 Score=216.52 Aligned_cols=147 Identities=27% Similarity=0.451 Sum_probs=133.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||+++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|++.|||..+ .| +.|+|.++..
T Consensus 30 Lp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i-~g--~~l~v~~a~~------ 95 (261)
T 3sde_A 30 LPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTIL-KS--RPLRIRFATH------ 95 (261)
T ss_dssp CCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEE-TT--EECEEEECCC------
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEE-CC--ceeEeeeccc------
Confidence 8999999999999999999999999764 89999999999999999999999875 45 6699998743
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
T Consensus 96 -------------------------------------------------------------------------------- 95 (261)
T 3sde_A 96 -------------------------------------------------------------------------------- 95 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
+
T Consensus 96 -------------------------------------------------------------------------------~ 96 (261)
T 3sde_A 96 -------------------------------------------------------------------------------G 96 (261)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------C
Confidence 3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc-CceeC---CcEEEEEE
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN-GCQLG---GKKLKVQL 317 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~-g~~i~---g~~l~v~~ 317 (327)
++|||+|||+.+++++|+++|++||.|.+|.|+.++ +|+++|||||+|.+.++|.+|+..|| +..+. ++.|.|++
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 689999999999999999999999999999999995 99999999999999999999999995 55554 99999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
+....
T Consensus 176 ~~~~~ 180 (261)
T 3sde_A 176 MEQFD 180 (261)
T ss_dssp CCCEE
T ss_pred ccccC
Confidence 87653
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1e-28 Score=218.57 Aligned_cols=150 Identities=18% Similarity=0.317 Sum_probs=130.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 81 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 81 (327)
||+++|+++|+++|+.||.|.+|+++++.++ ++|||||+|.+.++|.+|++ ++|.. +.| +.|+|.++.
T Consensus 49 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~-~~g--~~i~v~~~~------- 116 (292)
T 2ghp_A 49 LPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKV-VGQ--NEIIVSHLT------- 116 (292)
T ss_dssp ECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCE-ETT--EECEEEECC-------
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcE-eCC--cEEEEEECC-------
Confidence 7999999999999999999999999998765 58999999999999999995 89976 455 568888751
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020372 82 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (327)
T Consensus 117 -------------------------------------------------------------------------------- 116 (292)
T 2ghp_A 117 -------------------------------------------------------------------------------- 116 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020372 162 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 241 (327)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (327)
.
T Consensus 117 -------------------------------------------------------------------------------~ 117 (292)
T 2ghp_A 117 -------------------------------------------------------------------------------E 117 (292)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------C
Confidence 3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
++|||+|||+.+++++|+++|++|| .|.+++++.++ .|+++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+
T Consensus 118 ~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 118 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 6899999999999999999999999 99999999987 588999999999999999999999999999999999999886
Q ss_pred CCC
Q 020372 321 NKQ 323 (327)
Q Consensus 321 ~~~ 323 (327)
+..
T Consensus 197 ~~~ 199 (292)
T 2ghp_A 197 LEK 199 (292)
T ss_dssp C--
T ss_pred Ccc
Confidence 643
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=2e-25 Score=179.50 Aligned_cols=86 Identities=26% Similarity=0.422 Sum_probs=81.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||+.+++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|++++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020372 320 DNKQNK 325 (327)
Q Consensus 320 ~~~~~~ 325 (327)
++....
T Consensus 149 ~~~~~~ 154 (158)
T 2kn4_A 149 YGRPPD 154 (158)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 776543
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=6.8e-23 Score=151.00 Aligned_cols=83 Identities=37% Similarity=0.566 Sum_probs=79.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
...+++|||+|||+.+|+++|+++|++||.|.+++|++++.+|+++|||||+|.+.++|.+|++.|||..|+|++|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccC
Q 020372 318 KRD 320 (327)
Q Consensus 318 ~~~ 320 (327)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=1.7e-22 Score=160.89 Aligned_cols=80 Identities=26% Similarity=0.460 Sum_probs=74.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 335689999999999999999999999999999999875 589999999999999999999999999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
+++++
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98875
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=147.32 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=80.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
.++.++|||+||++.+++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
+..++
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 87654
No 25
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=3.2e-21 Score=146.34 Aligned_cols=89 Identities=66% Similarity=1.083 Sum_probs=83.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 020372 318 KRDNKQNKP 326 (327)
Q Consensus 318 ~~~~~~~~p 326 (327)
++++...+|
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 998876654
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=3e-22 Score=145.26 Aligned_cols=84 Identities=15% Similarity=0.333 Sum_probs=77.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-cCceeCCcEEEEEEc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKVQLK 318 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~~~ 318 (327)
+++|||+|||+.+|+++|+++|++|| .|.+|+|++++.+|+++|||||+|.+.++|.+|++.+ ++..++|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 7999999999989999999999999999999999987 466899999999999
Q ss_pred cCCCCC
Q 020372 319 RDNKQN 324 (327)
Q Consensus 319 ~~~~~~ 324 (327)
++++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887643
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=7.8e-22 Score=143.76 Aligned_cols=83 Identities=17% Similarity=0.304 Sum_probs=77.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc----eeCCc
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGR--VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC----QLGGK 311 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~--i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~----~i~g~ 311 (327)
...-.+|||+|||+.+|+++|+++|++||. |.+|++++|+.+|+++|||||+|.+.++|++|++.|||. .++||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345689999999999999999999999995 678999999989999999999999999999999999997 58999
Q ss_pred EEEEEEccC
Q 020372 312 KLKVQLKRD 320 (327)
Q Consensus 312 ~l~v~~~~~ 320 (327)
+|.|+|+++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.5e-21 Score=142.09 Aligned_cols=89 Identities=25% Similarity=0.408 Sum_probs=84.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 020372 318 KRDNKQNKP 326 (327)
Q Consensus 318 ~~~~~~~~p 326 (327)
++++...+|
T Consensus 92 a~~~~~~~~ 100 (103)
T 2cq0_A 92 AKPSTNSGP 100 (103)
T ss_dssp SSCCCCSCC
T ss_pred CCCCCCCCC
Confidence 998877655
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=139.10 Aligned_cols=86 Identities=23% Similarity=0.414 Sum_probs=81.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+++++.++ +++++|||||+|.+.++|.+|++.|||..++|+.|+|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++++..+
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9988764
No 30
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=7.6e-21 Score=135.48 Aligned_cols=83 Identities=36% Similarity=0.561 Sum_probs=79.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
+++|||+|||+.+++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|+..|||..++|++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999998
Q ss_pred CCC
Q 020372 321 NKQ 323 (327)
Q Consensus 321 ~~~ 323 (327)
+++
T Consensus 81 ~~~ 83 (83)
T 3md1_A 81 LEH 83 (83)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=139.55 Aligned_cols=88 Identities=22% Similarity=0.468 Sum_probs=83.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.++++|||+|||..+++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 020372 319 RDNKQNKP 326 (327)
Q Consensus 319 ~~~~~~~p 326 (327)
+++..+++
T Consensus 83 ~~~~~~~~ 90 (95)
T 2dnz_A 83 TERLDGGS 90 (95)
T ss_dssp SCCCCCCC
T ss_pred ccccCCCC
Confidence 98876643
No 32
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.3e-21 Score=139.77 Aligned_cols=87 Identities=24% Similarity=0.375 Sum_probs=82.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+++|+.++.+++++|||||+|.+.++|.+|++.|||..|.|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
+++++..
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9987654
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=136.11 Aligned_cols=83 Identities=34% Similarity=0.544 Sum_probs=77.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.+.++|||+|||..+++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCC
Q 020372 319 RDN 321 (327)
Q Consensus 319 ~~~ 321 (327)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 34
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=139.27 Aligned_cols=87 Identities=26% Similarity=0.494 Sum_probs=81.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||..+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++ ||+..|.|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4467999999999999999999999999999999999998899999999999999999999999 899999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99876654
No 35
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.2e-21 Score=141.18 Aligned_cols=88 Identities=26% Similarity=0.423 Sum_probs=82.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 44679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
+++++..+
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99876654
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.7e-20 Score=141.16 Aligned_cols=87 Identities=32% Similarity=0.525 Sum_probs=82.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++++...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9877644
No 37
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=140.71 Aligned_cols=88 Identities=26% Similarity=0.510 Sum_probs=82.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..++|+.++.+++++|||||+|.+.++|.+|++.||+..|.|++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++...+
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 98776554
No 38
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=140.48 Aligned_cols=88 Identities=24% Similarity=0.374 Sum_probs=83.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
+++++..+
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 99887654
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2.6e-20 Score=138.91 Aligned_cols=88 Identities=27% Similarity=0.419 Sum_probs=83.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC---cEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG---KKLK 314 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~ 314 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4467999999999999999999999999999999999998 89999999999999999999999999999988 9999
Q ss_pred EEEccCCCCCCC
Q 020372 315 VQLKRDNKQNKP 326 (327)
Q Consensus 315 v~~~~~~~~~~p 326 (327)
|.+++++..++|
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999998887765
No 40
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=136.99 Aligned_cols=84 Identities=21% Similarity=0.420 Sum_probs=79.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
...+.++|||+|||+.+++++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|+..|||..++|++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccC
Q 020372 317 LKRD 320 (327)
Q Consensus 317 ~~~~ 320 (327)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=1.8e-21 Score=140.96 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=72.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
.+|||+|||+.+++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..++|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 020372 320 DNKQNKP 326 (327)
Q Consensus 320 ~~~~~~p 326 (327)
+.....|
T Consensus 82 ~~~~~~~ 88 (90)
T 3p5t_L 82 KLEHHHH 88 (90)
T ss_dssp -------
T ss_pred CCccccC
Confidence 8766544
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=8.8e-21 Score=139.08 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=80.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
++++|||+|||..+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020372 320 DNKQN 324 (327)
Q Consensus 320 ~~~~~ 324 (327)
+++..
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87643
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.5e-21 Score=138.87 Aligned_cols=87 Identities=28% Similarity=0.459 Sum_probs=81.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
.++++|||+|||+.+++++|+++|++||.|..+ +|+.++.+++++|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++..++
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98776553
No 44
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=136.20 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=78.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|||..|.|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 44678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cc
Q 020372 318 KR 319 (327)
Q Consensus 318 ~~ 319 (327)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1.5e-20 Score=134.50 Aligned_cols=82 Identities=28% Similarity=0.455 Sum_probs=78.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|++.|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 020372 318 KR 319 (327)
Q Consensus 318 ~~ 319 (327)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.8e-20 Score=142.13 Aligned_cols=82 Identities=35% Similarity=0.588 Sum_probs=76.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
..+|||+|||+.+++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|++.|||..|+|++|+|+++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999985 55899999999999999999999999999999999999887
Q ss_pred CCCC
Q 020372 321 NKQN 324 (327)
Q Consensus 321 ~~~~ 324 (327)
++.+
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6543
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=139.76 Aligned_cols=87 Identities=25% Similarity=0.400 Sum_probs=81.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44578999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
+++++..
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876544
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=138.20 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=80.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA---TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~---~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
.+.++|||+|||+.+++++|+++|++||.|.+|+|..++. +++++|||||+|.+.++|.+|+..|||..|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999999875 5589999999999999999999999999999999999
Q ss_pred EEccCCCCCC
Q 020372 316 QLKRDNKQNK 325 (327)
Q Consensus 316 ~~~~~~~~~~ 325 (327)
++++++...+
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998776553
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.1e-20 Score=137.33 Aligned_cols=86 Identities=23% Similarity=0.435 Sum_probs=80.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++|| |.+|+|+.++.+++++|||||+|.+.++|.+|+ .|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44679999999999999999999999997 999999999988999999999999999999999 8999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++...+
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 99876553
No 50
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-19 Score=141.95 Aligned_cols=88 Identities=34% Similarity=0.509 Sum_probs=83.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||..+++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..|.|++|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++..++
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876654
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.3e-20 Score=139.74 Aligned_cols=88 Identities=26% Similarity=0.445 Sum_probs=82.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc------CceeCCc
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN------GCQLGGK 311 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~------g~~i~g~ 311 (327)
..+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4567899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCCCCCC
Q 020372 312 KLKVQLKRDNKQNK 325 (327)
Q Consensus 312 ~l~v~~~~~~~~~~ 325 (327)
.|+|+++++++...
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999876653
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-20 Score=137.77 Aligned_cols=87 Identities=34% Similarity=0.564 Sum_probs=81.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
...+.++|||+|||+.+++++|+++|++||.|.+|+|..+ +++++|||||+|.+.++|.+|+..|||..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EccCCCCCC
Q 020372 317 LKRDNKQNK 325 (327)
Q Consensus 317 ~~~~~~~~~ 325 (327)
+++++..++
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 999877654
No 53
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=4e-20 Score=140.90 Aligned_cols=83 Identities=65% Similarity=1.103 Sum_probs=78.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
...+.++|||+|||+.+++++|+++|++||.|.+++|+.++.+++++|||||+|.+.++|++|++.|||..|+|++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Ecc
Q 020372 317 LKR 319 (327)
Q Consensus 317 ~~~ 319 (327)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 975
No 54
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=139.08 Aligned_cols=85 Identities=26% Similarity=0.524 Sum_probs=81.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..++++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..|+|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98875
No 55
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=2.1e-20 Score=140.66 Aligned_cols=88 Identities=25% Similarity=0.420 Sum_probs=82.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..++++|||+|||..+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++..+|
T Consensus 103 a~~~~~~r 110 (110)
T 1oo0_B 103 CFVKGPKR 110 (110)
T ss_dssp SEESSCC-
T ss_pred cccCCCCC
Confidence 99887654
No 56
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=138.93 Aligned_cols=86 Identities=24% Similarity=0.389 Sum_probs=81.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..++++|||+|||..+++++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020372 318 KRDNKQ 323 (327)
Q Consensus 318 ~~~~~~ 323 (327)
++++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987654
No 57
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=136.36 Aligned_cols=82 Identities=22% Similarity=0.429 Sum_probs=78.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 309 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~ 309 (327)
..+.++|||+|||+.+++++|+++|++||.|.+ ++++.++.+|+++|||||+|.+.++|.+|++.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456799999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CcEEEEEEcc
Q 020372 310 GKKLKVQLKR 319 (327)
Q Consensus 310 g~~l~v~~~~ 319 (327)
|++|+|++++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 58
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=140.08 Aligned_cols=88 Identities=27% Similarity=0.456 Sum_probs=82.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCee--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVL--------SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 309 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~ 309 (327)
..+.++|||+|||+.+++++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45679999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CcEEEEEEccCCCCCC
Q 020372 310 GKKLKVQLKRDNKQNK 325 (327)
Q Consensus 310 g~~l~v~~~~~~~~~~ 325 (327)
|+.|+|++++++....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999998876543
No 59
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.7e-20 Score=139.61 Aligned_cols=87 Identities=28% Similarity=0.411 Sum_probs=80.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
...+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.+++ .|.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 355679999999999999999999999999999999999988999999999999999999999999998 8999999999
Q ss_pred EccCCCCC
Q 020372 317 LKRDNKQN 324 (327)
Q Consensus 317 ~~~~~~~~ 324 (327)
+++.+...
T Consensus 92 ~a~~~~~~ 99 (116)
T 2cqd_A 92 LAYLGAKP 99 (116)
T ss_dssp ESTTTCCC
T ss_pred EcccCCCc
Confidence 99765443
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.1e-20 Score=137.76 Aligned_cols=87 Identities=20% Similarity=0.424 Sum_probs=81.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh-cCceeCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD-KATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~~~~~~~G~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v 315 (327)
..+.++|||+|||+.+++++|+++|++||.|..|+|+.+ +.+++++|||||+|.+.++|.+|+..| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456799999999999999999999999999999999998 778999999999999999999999999 999999999999
Q ss_pred EEccCCCCC
Q 020372 316 QLKRDNKQN 324 (327)
Q Consensus 316 ~~~~~~~~~ 324 (327)
++++++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999877654
No 61
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.7e-20 Score=138.33 Aligned_cols=87 Identities=23% Similarity=0.426 Sum_probs=81.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee---CCcEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL---GGKKLK 314 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i---~g~~l~ 314 (327)
..+.++|||+|||..+++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45679999999999999999999999999999999999988899999999999999999999999999988 899999
Q ss_pred EEEccCCCCC
Q 020372 315 VQLKRDNKQN 324 (327)
Q Consensus 315 v~~~~~~~~~ 324 (327)
|+++++++.+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999877654
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2e-20 Score=144.55 Aligned_cols=87 Identities=21% Similarity=0.437 Sum_probs=82.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
...+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.|||..|+|++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 020372 317 LKRDNKQ 323 (327)
Q Consensus 317 ~~~~~~~ 323 (327)
++++++.
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988764
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.8e-20 Score=136.76 Aligned_cols=85 Identities=18% Similarity=0.398 Sum_probs=79.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..+.++|||+|||+.+++++|+++|++|| |.+|+|+.++.+ ++++|||||+|.+.++|++|+ .||+..|.|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34579999999999999999999999999 999999999877 999999999999999999999 899999999999999
Q ss_pred EccCCCCC
Q 020372 317 LKRDNKQN 324 (327)
Q Consensus 317 ~~~~~~~~ 324 (327)
+++++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887654
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=137.05 Aligned_cols=84 Identities=29% Similarity=0.471 Sum_probs=79.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4567899999999999999999999999999999999997 799999999999999999999999999999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87543
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=136.48 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=80.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020372 318 KRDNKQ 323 (327)
Q Consensus 318 ~~~~~~ 323 (327)
++.+..
T Consensus 92 a~~~~s 97 (98)
T 2cqp_A 92 GSGPSS 97 (98)
T ss_dssp SSCSSC
T ss_pred cCCCCC
Confidence 887653
No 66
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=136.16 Aligned_cols=86 Identities=21% Similarity=0.396 Sum_probs=81.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCee-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcE----
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVL-SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK---- 312 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~---- 312 (327)
..+.++|||+|||+.+++++|+++|++||.|. +++|+.++.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44679999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q 020372 313 LKVQLKRDNKQ 323 (327)
Q Consensus 313 l~v~~~~~~~~ 323 (327)
|+|.++++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987653
No 67
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-20 Score=134.23 Aligned_cols=85 Identities=22% Similarity=0.299 Sum_probs=78.2
Q ss_pred CCCceEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
...++|||+|||+.+++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|++|++.|||..++|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999998744 89999999999999999999999999999999
Q ss_pred EEEccCCCCCCC
Q 020372 315 VQLKRDNKQNKP 326 (327)
Q Consensus 315 v~~~~~~~~~~p 326 (327)
|++++++....|
T Consensus 84 V~~a~~~~~~~~ 95 (96)
T 2dgx_A 84 VSLATGASGPSS 95 (96)
T ss_dssp EEECCCSSCCCC
T ss_pred EEEcCCCCCCCC
Confidence 999988776543
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=133.08 Aligned_cols=84 Identities=18% Similarity=0.369 Sum_probs=78.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGV-SKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~-~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.+++|||+|||+.+++++|+++|++||.|.++++..++.++. ++|||||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999886665 8999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020372 319 RDNKQ 323 (327)
Q Consensus 319 ~~~~~ 323 (327)
.+.+.
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=134.86 Aligned_cols=85 Identities=19% Similarity=0.458 Sum_probs=77.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..|+|.. +++++|||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999964 456899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++...+
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4a_A 96 PRSGRGTG 103 (109)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 99876554
No 70
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=133.78 Aligned_cols=86 Identities=21% Similarity=0.344 Sum_probs=79.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|+..|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 45679999999999999999999999999999999999853 3689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++...+
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99876554
No 71
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=5.5e-21 Score=141.17 Aligned_cols=82 Identities=24% Similarity=0.318 Sum_probs=78.5
Q ss_pred CCceEEEeCCCC------CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC-cE
Q 020372 240 PGANLFIYHIPQ------EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-KK 312 (327)
Q Consensus 240 ~~~~l~v~nLp~------~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g-~~ 312 (327)
.+++|||+|||+ .+++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999999889999999999999999999999999999999 99
Q ss_pred EEEEEccCC
Q 020372 313 LKVQLKRDN 321 (327)
Q Consensus 313 l~v~~~~~~ 321 (327)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998764
No 72
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=7e-21 Score=148.42 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=80.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020372 320 DNKQN 324 (327)
Q Consensus 320 ~~~~~ 324 (327)
++...
T Consensus 126 ~~~~~ 130 (135)
T 2lea_A 126 YGRPP 130 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 73
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=9.9e-20 Score=131.45 Aligned_cols=81 Identities=21% Similarity=0.447 Sum_probs=77.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
.++|||+|||+.+++++|+++|++||.|.++++..++.+++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999999987
Q ss_pred CC
Q 020372 321 NK 322 (327)
Q Consensus 321 ~~ 322 (327)
+.
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 74
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-19 Score=132.85 Aligned_cols=86 Identities=28% Similarity=0.516 Sum_probs=79.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
...+.++|||+|||+.+++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999998863 389999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 020372 317 LKRDNKQN 324 (327)
Q Consensus 317 ~~~~~~~~ 324 (327)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99877654
No 75
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=145.67 Aligned_cols=86 Identities=15% Similarity=0.337 Sum_probs=80.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc----eeCC
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC----QLGG 310 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~--v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~----~i~g 310 (327)
.....++|||+|||+.+++++|+++|++||.|.. |+|+.|+.+|+++|||||+|.+. +|.+|+..|||. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999977 99999998999999999999999 999999999999 9999
Q ss_pred cEEEEEEccCCCC
Q 020372 311 KKLKVQLKRDNKQ 323 (327)
Q Consensus 311 ~~l~v~~~~~~~~ 323 (327)
|.|+|+++++++.
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987654
No 76
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=136.92 Aligned_cols=87 Identities=21% Similarity=0.359 Sum_probs=81.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|++. ++..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999 99999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++...+
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 98876553
No 77
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=138.78 Aligned_cols=85 Identities=31% Similarity=0.468 Sum_probs=80.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+.+++++|+++|++||.|..|.|..++ +++++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020372 318 KRDNKQ 323 (327)
Q Consensus 318 ~~~~~~ 323 (327)
++++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987653
No 78
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=9.6e-20 Score=132.40 Aligned_cols=85 Identities=32% Similarity=0.576 Sum_probs=79.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.++++..+ +++++|||||+|.+.++|.+|++.|||..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446799999999999999999999999999999999984 789999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
+++....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9987654
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=136.61 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=81.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCce-eCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQA-FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ-LGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~-i~g~~l~v 315 (327)
..+.++|||+|||+.+++++|+++|++ ||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|||.. ++|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 446789999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred EEccCCCCC
Q 020372 316 QLKRDNKQN 324 (327)
Q Consensus 316 ~~~~~~~~~ 324 (327)
++++++..+
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999876654
No 80
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=1.7e-19 Score=144.42 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=83.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.||+..|+|+.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 020372 318 KRDNKQNKP 326 (327)
Q Consensus 318 ~~~~~~~~p 326 (327)
++++..++.
T Consensus 116 a~~~~~~~~ 124 (156)
T 1h2v_Z 116 DAGFKEGRQ 124 (156)
T ss_dssp ESCCCTTCC
T ss_pred CCCCCCcCC
Confidence 998776554
No 81
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=133.23 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=77.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|..++ +++++|||||+|.+.++|.+|++.|||..+.|++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4467899999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred ccC
Q 020372 318 KRD 320 (327)
Q Consensus 318 ~~~ 320 (327)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 82
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=7.6e-20 Score=141.01 Aligned_cols=87 Identities=24% Similarity=0.381 Sum_probs=81.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876554
No 83
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.2e-20 Score=141.58 Aligned_cols=71 Identities=27% Similarity=0.441 Sum_probs=64.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||++|+++|++||.|.+|+|++|+ +++||||||+|.+.++|++||+.|||.. +.| +.|+|.++..+
T Consensus 13 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~-~~g--~~i~V~~a~~~ 83 (115)
T 4f25_A 13 LDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGML-LND--RKVFVGRFKSR 83 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEEESSCC
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEEECCCc
Confidence 89999999999999999999999999986 4589999999999999999999999987 455 66999999765
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=130.07 Aligned_cols=84 Identities=13% Similarity=0.290 Sum_probs=78.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+.+++++|+++|++| .|.+++|+.+ .+|+++|||||+|.+.++|.+|+. |||..|+|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999 599999999999999999999999 999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++++...
T Consensus 84 a~~~~~s 90 (91)
T 2dgw_A 84 EKSGPSS 90 (91)
T ss_dssp ESSCCCC
T ss_pred CCcCCCC
Confidence 9887654
No 85
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=2e-19 Score=134.51 Aligned_cols=82 Identities=27% Similarity=0.424 Sum_probs=78.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+++|+.++ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4467999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccC
Q 020372 318 KRD 320 (327)
Q Consensus 318 ~~~ 320 (327)
+.+
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 863
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-20 Score=134.85 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=73.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CceeCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v 315 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+++ +|||||+|++.++|..|++.|+ +..|.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999999864 6899999999999999999886 47899999999
Q ss_pred EEccCCCCC
Q 020372 316 QLKRDNKQN 324 (327)
Q Consensus 316 ~~~~~~~~~ 324 (327)
.+++.+...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999887654
No 87
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=131.74 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=73.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCce--eCCcEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ--LGGKKLK 314 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~--i~g~~l~ 314 (327)
...++++|||+|||+.+++++|+++|++||.|.++.+++ .+|||||+|.+.++|.+|++.|++.. +.||+|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 355789999999999999999999999999999999875 36899999999999999999999885 7899999
Q ss_pred EEEccCCC
Q 020372 315 VQLKRDNK 322 (327)
Q Consensus 315 v~~~~~~~ 322 (327)
|.|++.++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998764
No 88
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=138.27 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=80.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3458999999999999999999999999999999999988899999999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 020372 319 RDNKQN 324 (327)
Q Consensus 319 ~~~~~~ 324 (327)
+++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 988665
No 89
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=9.5e-20 Score=145.32 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=77.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..++|||+|||+.+++++|+++|++|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+||+.|||..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred ccCC
Q 020372 318 KRDN 321 (327)
Q Consensus 318 ~~~~ 321 (327)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 90
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=2.3e-19 Score=128.93 Aligned_cols=80 Identities=21% Similarity=0.452 Sum_probs=75.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++. ++..++|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999988999999999999999999999975 88999999999987
Q ss_pred c
Q 020372 318 K 318 (327)
Q Consensus 318 ~ 318 (327)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=1.2e-18 Score=133.84 Aligned_cols=88 Identities=25% Similarity=0.358 Sum_probs=82.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..++++|||+|||+.+++++|+++|++||.|.+|+|..++ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 020372 318 KRDNKQNKP 326 (327)
Q Consensus 318 ~~~~~~~~p 326 (327)
+.+.....|
T Consensus 111 a~~~~~~~~ 119 (124)
T 2kt5_A 111 VASQIDLEH 119 (124)
T ss_dssp ECCTTCCCC
T ss_pred eCCCCCCCC
Confidence 988765544
No 92
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=5.5e-20 Score=134.51 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=76.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
.++.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 33568999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ccC
Q 020372 318 KRD 320 (327)
Q Consensus 318 ~~~ 320 (327)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 93
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.2e-19 Score=130.88 Aligned_cols=85 Identities=25% Similarity=0.412 Sum_probs=79.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+. ++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4567899999999999999999999999999999999998889999999999999999999999 57899999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9887653
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.4e-19 Score=127.22 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=69.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.||.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999864 68999999999999999999999999999999999984
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.5e-19 Score=135.60 Aligned_cols=86 Identities=24% Similarity=0.395 Sum_probs=78.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.+ +..++|+.|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 446789999999999999999999999999999999999888999999999999999999999986 5999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
+.++...
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987754
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=132.58 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=74.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc--eeCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC--QLGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v 315 (327)
..++++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999988753 689999999999999999998765 589999999
Q ss_pred EEccCCCCCCC
Q 020372 316 QLKRDNKQNKP 326 (327)
Q Consensus 316 ~~~~~~~~~~p 326 (327)
.+++.++..+|
T Consensus 86 ~~a~~~~~~~~ 96 (104)
T 1wex_A 86 NYSTSKRITRP 96 (104)
T ss_dssp EECSSSSCCCS
T ss_pred EEccCccccCC
Confidence 99998776554
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=134.80 Aligned_cols=84 Identities=29% Similarity=0.533 Sum_probs=80.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 020372 320 DNKQ 323 (327)
Q Consensus 320 ~~~~ 323 (327)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7653
No 98
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=132.78 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=77.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+.+++++|+++|++||. .+|+|+.++ +++++|||||+|.+.++|++||+ +|+..|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 445789999999999999999999999994 599999998 99999999999999999999996 699999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
+...+..+
T Consensus 89 ~~~~~~~~ 96 (102)
T 1wez_A 89 NSTAGTSG 96 (102)
T ss_dssp ECCCCCCC
T ss_pred CCCCCCCC
Confidence 88766543
No 99
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=134.58 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=75.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
...++|||+|||+.+|+++|+++|++||.|.+|.|+.++. |+++|||||+|.+.++|.+|+. ++|..|+|+.|+|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568999999999999999999999999999999999985 9999999999999999999999 8999999999999986
Q ss_pred cC
Q 020372 319 RD 320 (327)
Q Consensus 319 ~~ 320 (327)
.+
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-19 Score=129.54 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=73.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CceeCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v 315 (327)
..++++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|++.|+ +..+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 456789999999999999999999999999999988754 6899999999999999999875 67899999999
Q ss_pred EEccCCCCC
Q 020372 316 QLKRDNKQN 324 (327)
Q Consensus 316 ~~~~~~~~~ 324 (327)
.+++.++-.
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999877544
No 101
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=137.18 Aligned_cols=82 Identities=23% Similarity=0.365 Sum_probs=77.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+ .|||..|+|+.|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4589999999999999999999999999999999999988999999999999999999999 899999999999999987
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 653
No 102
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-18 Score=131.82 Aligned_cols=84 Identities=27% Similarity=0.500 Sum_probs=78.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee--------C
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--------G 309 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i--------~ 309 (327)
..+.++|||+|||+.+++++|+++|++||.|.+++|+.++ +++++|||||+|.+.++|.+|+..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4467899999999999999999999999999999999998 999999999999999999999999999999 5
Q ss_pred CcEEEEEEccCCC
Q 020372 310 GKKLKVQLKRDNK 322 (327)
Q Consensus 310 g~~l~v~~~~~~~ 322 (327)
++.|+|+|++++.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 8889999998654
No 103
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-19 Score=130.62 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=76.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|+..|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567999999999999999999999999977 56666 4899999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++...+
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 98776543
No 104
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=6e-20 Score=135.60 Aligned_cols=83 Identities=17% Similarity=0.392 Sum_probs=76.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
....++|||+|||+.+++++|+++|++|| |.+|+|+.++ .+|+++|||||+|.+.++|.+|+ .|||..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44679999999999999999999999999 9999999997 58999999999999999999999 899999999999999
Q ss_pred EccCCC
Q 020372 317 LKRDNK 322 (327)
Q Consensus 317 ~~~~~~ 322 (327)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998765
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=134.45 Aligned_cols=85 Identities=25% Similarity=0.289 Sum_probs=79.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CceeCCcEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVF-VDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLK 314 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~-i~~v~i~-~~~~~~~~~G~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~ 314 (327)
.+.++|||+|||+.+++++|+++|++||. |.++.++ .++.+++++|||||+|.+.++|.+|++.|| +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 787788999999999999999999999996 5899999999
Q ss_pred EEEccCCCC
Q 020372 315 VQLKRDNKQ 323 (327)
Q Consensus 315 v~~~~~~~~ 323 (327)
|++++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987765
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=133.14 Aligned_cols=82 Identities=17% Similarity=0.305 Sum_probs=74.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC--ceeCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v 315 (327)
..++++|||+|||+.+++++|+++|++||.|.+|+|+.+ +|||||+|++.++|.+|++.|++ ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999999865 68999999999999999999884 6899999999
Q ss_pred EEccCCCCCC
Q 020372 316 QLKRDNKQNK 325 (327)
Q Consensus 316 ~~~~~~~~~~ 325 (327)
.+++.++-.+
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9999876543
No 107
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-20 Score=131.75 Aligned_cols=81 Identities=27% Similarity=0.472 Sum_probs=76.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.++++|||+|||+.+++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|||..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999987765
Q ss_pred c
Q 020372 319 R 319 (327)
Q Consensus 319 ~ 319 (327)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-20 Score=136.40 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=78.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+.+++++|+++|++||.|.. .++.++.+++++|||||+|.+.++|.+|++ |||..|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 445789999999999999999999999999988 667776689999999999999999999999 999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
+++++.++
T Consensus 92 a~~~~~~~ 99 (101)
T 1fj7_A 92 PKGRDGTR 99 (101)
T ss_dssp CSCCCCSS
T ss_pred cCCCCCCC
Confidence 99887654
No 109
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=131.34 Aligned_cols=71 Identities=28% Similarity=0.527 Sum_probs=66.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||+++||++|+++|++||.|.+|++++|+ +|+++|||||+|.+.++|++|++.|||..+ .| ++|+|.+|++
T Consensus 27 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~g--r~l~V~~AkP 98 (99)
T 4fxv_A 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL-QS--KTIKVSYARP 98 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECCB
T ss_pred CCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE-CC--EEEEEEEeeC
Confidence 89999999999999999999999999996 899999999999999999999999999874 55 6799999975
No 110
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=129.47 Aligned_cols=85 Identities=25% Similarity=0.501 Sum_probs=77.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|+.| ..++++.++.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567999999999999999999999977 3678888888999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++.+++
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 99876653
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=136.14 Aligned_cols=89 Identities=21% Similarity=0.402 Sum_probs=76.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+..+++++|||||+|.+.++|.+|+..|||..|.|+.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44679999999999999999999999999994432222222788999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 020372 318 KRDNKQNKP 326 (327)
Q Consensus 318 ~~~~~~~~p 326 (327)
++++..+++
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998876643
No 112
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=4.9e-19 Score=134.68 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=75.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
....++|||+|||+.+++++|+++|+.||. |..|+|+.++ +|+++|||||+|.+.++|.+|++ ||+..|+||.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 445789999999999999999999999999 8999999998 49999999999999999999999 899999999999
Q ss_pred EEEccC
Q 020372 315 VQLKRD 320 (327)
Q Consensus 315 v~~~~~ 320 (327)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998754
No 113
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-19 Score=132.88 Aligned_cols=82 Identities=29% Similarity=0.546 Sum_probs=76.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||..+++++|+++|++||.|.++++..++ +.++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567999999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred ccCC
Q 020372 318 KRDN 321 (327)
Q Consensus 318 ~~~~ 321 (327)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8875
No 114
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=6.2e-19 Score=135.47 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=79.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||+.+++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|+ .|||..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999889999999999999999999999 799999999999999998
Q ss_pred CCCCC
Q 020372 320 DNKQN 324 (327)
Q Consensus 320 ~~~~~ 324 (327)
+...+
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 115
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=137.43 Aligned_cols=81 Identities=28% Similarity=0.449 Sum_probs=76.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|||..|+|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44679999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred c
Q 020372 318 K 318 (327)
Q Consensus 318 ~ 318 (327)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 116
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.4e-19 Score=126.56 Aligned_cols=80 Identities=28% Similarity=0.548 Sum_probs=74.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||..+++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..+.|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4467999999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98876553
No 117
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-19 Score=133.34 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=78.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHH---HHhhccCCeeEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhcCceeCCc
Q 020372 238 GPPGANLFIYHIPQEFGDQELG---NAFQAFGRVLSAKVFVDKATG---VSKCFGFVSYESPASAQNAIAMMNGCQLGGK 311 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~~~~---~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~ 311 (327)
....++|||+|||+.+++++|+ ++|++||.|.+|+|..++.++ +++|||||+|.+.++|++|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3357899999999999999999 999999999999999887543 5679999999999999999999999999999
Q ss_pred EEEEEEccCCC
Q 020372 312 KLKVQLKRDNK 322 (327)
Q Consensus 312 ~l~v~~~~~~~ 322 (327)
.|+|++++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998876
No 118
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.4e-19 Score=126.33 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=72.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
+|||+|||+.+++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++ |||..++|++|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 8999999999999875
No 119
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=9e-19 Score=141.43 Aligned_cols=87 Identities=25% Similarity=0.414 Sum_probs=80.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..++++|||+|||+.+++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++++...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 8876543
No 120
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=5.9e-20 Score=132.93 Aligned_cols=82 Identities=23% Similarity=0.450 Sum_probs=74.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
++|||+|||..+++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ |.+|+..|||..++|+.|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999999876
Q ss_pred CCC
Q 020372 322 KQN 324 (327)
Q Consensus 322 ~~~ 324 (327)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 121
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=130.79 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=76.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
....++|||+|||+.+++++|+++|++||.|.. ++|+.+ .+|+++|||||+|.+.++|++|+.. |+..|+||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999987 888888 5999999999999999999999998 9999999999999
Q ss_pred EccCCC
Q 020372 317 LKRDNK 322 (327)
Q Consensus 317 ~~~~~~ 322 (327)
++..++
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 877554
No 122
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=127.11 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=74.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC--CcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG--GKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v 315 (327)
..+.++|||+|||+.+++++|+++|++||.|.++++..+ +|||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 445789999999999999999999999999999988753 689999999999999999999999999 999999
Q ss_pred EEccCCCCC
Q 020372 316 QLKRDNKQN 324 (327)
Q Consensus 316 ~~~~~~~~~ 324 (327)
++++++..+
T Consensus 88 ~~a~~~~~~ 96 (97)
T 1why_A 88 DFAKSGPSS 96 (97)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999988754
No 123
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=131.64 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=75.7
Q ss_pred CCCceEEEeCCCCCC------CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCc-
Q 020372 239 PPGANLFIYHIPQEF------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK- 311 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~- 311 (327)
..+++|||+|||+.+ ++++|+++|++||.|.+|+|+ +.+|+++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999988 35899999999999999999999999999999998
Q ss_pred EEEEEEccCCC
Q 020372 312 KLKVQLKRDNK 322 (327)
Q Consensus 312 ~l~v~~~~~~~ 322 (327)
.|+|.++.+.+
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999988654
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=4.4e-19 Score=132.76 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=72.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
...++|||+|||+.+++++|+++|++|| .|..+.|.. ++++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 899998853 34899999999999999999999999999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
++...
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 87553
No 125
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-19 Score=134.97 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=76.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCe-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRV-LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..+.++|||+|||+.+++++|+++|++||.| ..|+|+.++ +|+++|||||+|.+.++|.+|++. |+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4457899999999999999999999999999 899999998 999999999999999999999997 9999999999999
Q ss_pred EccCC
Q 020372 317 LKRDN 321 (327)
Q Consensus 317 ~~~~~ 321 (327)
++..+
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 97654
No 126
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=129.56 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=71.2
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc--eeCCcEEEE
Q 020372 239 PPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC--QLGGKKLKV 315 (327)
Q Consensus 239 ~~~~~l~v~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v 315 (327)
.++++|||+|||+ .+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|..|++.||+. .|.||+|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999865 479999999999999999999865 599999999
Q ss_pred EEccCCC
Q 020372 316 QLKRDNK 322 (327)
Q Consensus 316 ~~~~~~~ 322 (327)
.+++.++
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998654
No 127
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=129.13 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=73.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC-----cEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-----KKL 313 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g-----~~l 313 (327)
...++|||+|||+.+++++|+++|++||.|..|+|+.+ |||||+|.+.++|++||+.|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999865 799999999999999999999999999 999
Q ss_pred EEEEccCCCCC
Q 020372 314 KVQLKRDNKQN 324 (327)
Q Consensus 314 ~v~~~~~~~~~ 324 (327)
+|++++++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999887654
No 128
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=2.7e-19 Score=138.97 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=76.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
....++|||+|||+.+|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++|++ ||+..|+||.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345789999999999999999999999999 89999999985 9999999999999999999999 999999999999
Q ss_pred EEEccCC
Q 020372 315 VQLKRDN 321 (327)
Q Consensus 315 v~~~~~~ 321 (327)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9987643
No 129
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=136.14 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=76.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+||. |||..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456899999999999999999999999999987666766799999999999999999999999 999999999999999
Q ss_pred ccCC
Q 020372 318 KRDN 321 (327)
Q Consensus 318 ~~~~ 321 (327)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7653
No 130
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=8e-19 Score=134.68 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=74.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 313 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l 313 (327)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 7999999999987753 68899999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 020372 314 KVQLKRDNK 322 (327)
Q Consensus 314 ~v~~~~~~~ 322 (327)
+|.+++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998764
No 131
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=3.5e-19 Score=164.95 Aligned_cols=83 Identities=18% Similarity=0.436 Sum_probs=79.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||..|||..|.|+.|.|.+++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
.+.
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 654
No 132
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-19 Score=126.39 Aligned_cols=76 Identities=25% Similarity=0.393 Sum_probs=73.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
++|||+|||+.+++++|+++|++||.|.++.+..++.+++++|||||+|.+.++|.+|++.++ ..++|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998889999999999999999999999999 9999999999986
No 133
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=126.63 Aligned_cols=81 Identities=25% Similarity=0.485 Sum_probs=73.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+.+++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999997 666654 5789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020372 318 KRDNKQ 323 (327)
Q Consensus 318 ~~~~~~ 323 (327)
+++++.
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 988754
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.9e-19 Score=130.45 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC--ceeCCcEEE
Q 020372 238 GPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLK 314 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~ 314 (327)
..++++|||+|||++ +++++|+++|++||.|.+|+|++ ++|||||+|.+.++|..|++.|++ ..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456899999999998 99999999999999999999974 468999999999999999998864 569999999
Q ss_pred EEEccCCCCC
Q 020372 315 VQLKRDNKQN 324 (327)
Q Consensus 315 v~~~~~~~~~ 324 (327)
|.+++.++.-
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876543
No 135
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=124.34 Aligned_cols=81 Identities=25% Similarity=0.448 Sum_probs=74.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.++++.+ +||||+|.+.++|.+|++.|||..|.|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45679999999999999999999999999999999863 3999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 020372 318 KRDNKQNKP 326 (327)
Q Consensus 318 ~~~~~~~~p 326 (327)
++++....|
T Consensus 79 a~~~~~~~~ 87 (92)
T 2dgt_A 79 STSRLRTAS 87 (92)
T ss_dssp SSCCCSCCC
T ss_pred ccCCCCCCC
Confidence 998876543
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=127.92 Aligned_cols=83 Identities=14% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..+ . .+++++|||||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467899999999999999999999999988766 2 3788999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++...+
T Consensus 88 a~~~~~~~ 95 (96)
T 1fjc_A 88 TGEKGGTR 95 (96)
T ss_dssp CSSSCCCC
T ss_pred cCCCCCCC
Confidence 99887664
No 137
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=129.11 Aligned_cols=82 Identities=24% Similarity=0.496 Sum_probs=75.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||..+++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999865 68999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++...+
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 99876543
No 138
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=4.3e-18 Score=124.80 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=72.2
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..++++|||+|||+ .+++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..|||..++|++|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 55689999999998 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred EccCCC
Q 020372 317 LKRDNK 322 (327)
Q Consensus 317 ~~~~~~ 322 (327)
+++.+.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998765
No 139
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=128.77 Aligned_cols=78 Identities=22% Similarity=0.454 Sum_probs=73.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
++|||+|||+.+++++|+++|++||.|.++++..+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6899999999999999999999999999999999999877
Q ss_pred CCC
Q 020372 322 KQN 324 (327)
Q Consensus 322 ~~~ 324 (327)
..+
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 140
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=129.00 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=72.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||+.+++++|+++|++| .|.+|+|+.++ +|+++|||||+|.+.++|++|+ .+|+..|+||.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 89999999997 5999999999999999999999 589999999999998865
Q ss_pred C
Q 020372 320 D 320 (327)
Q Consensus 320 ~ 320 (327)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 141
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=5.1e-18 Score=125.89 Aligned_cols=79 Identities=23% Similarity=0.442 Sum_probs=72.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..|+++ +|||||+|.+.++|.+|++.||+..|.|+.|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3457899999999999999999999999999999886 45999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++++...
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9877654
No 142
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.7e-18 Score=123.45 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=72.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAF--GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
..+.++|||+|||+.+++++|+++|++| |.|.++++. +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4467899999999999999999999999 999998764 579999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 020372 316 QLKRDNKQN 324 (327)
Q Consensus 316 ~~~~~~~~~ 324 (327)
++++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999987654
No 143
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=128.59 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=68.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
||+++||++|+++|++||.|.+|.|++|+ +|+++|||||+|++.++|++|++.|||..+ .| +.|+|.++......
T Consensus 14 L~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~-~g--r~i~V~~a~~~~~~ 89 (110)
T 3s8s_A 14 LNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV-MG--NIIHAQLDIKGQQR 89 (110)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECSTTHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEEEEECCCCcHH
Confidence 89999999999999999999999999997 799999999999999999999999999874 55 66999999776543
No 144
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-19 Score=125.52 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=68.5
Q ss_pred CceEEEeCCCCCC------CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCc-EE
Q 020372 241 GANLFIYHIPQEF------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KL 313 (327)
Q Consensus 241 ~~~l~v~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~-~l 313 (327)
+++|||+|||+.+ ++++|+++|++||.|.++++. +.+|+++|||||+|.+.++|.+|++.|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 779999999999999999987 35899999999999999999999999999999999 88
Q ss_pred EEE
Q 020372 314 KVQ 316 (327)
Q Consensus 314 ~v~ 316 (327)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 145
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=125.31 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=74.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..+++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999998753 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020372 318 KRDNKQ 323 (327)
Q Consensus 318 ~~~~~~ 323 (327)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 988764
No 146
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=122.66 Aligned_cols=79 Identities=29% Similarity=0.477 Sum_probs=73.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|.++++.+ +||||+|.+.++|.+|+..|||..++|++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999873 3999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++++...
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9877654
No 147
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=8e-18 Score=126.39 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=72.3
Q ss_pred CCceEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 240 PGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 240 ~~~~l~v~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
..++|||+|||+. +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999988 4789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020372 319 RDNKQNK 325 (327)
Q Consensus 319 ~~~~~~~ 325 (327)
+.++..+
T Consensus 98 ~~~~~~~ 104 (110)
T 1wf1_A 98 GEPKPDR 104 (110)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 8665554
No 148
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.1e-18 Score=127.50 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=71.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
...++|||+|||..+++++|+++|++||.|.++++. +++|||||+|.+.++|.+|+..|||..++|++|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 346899999999999999999999999999999987 35789999999999999999999999999999999998
Q ss_pred cCC
Q 020372 319 RDN 321 (327)
Q Consensus 319 ~~~ 321 (327)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 149
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.1e-18 Score=129.27 Aligned_cols=79 Identities=22% Similarity=0.406 Sum_probs=72.3
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhcCce
Q 020372 242 ANLFIYHI----PQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES----PAS----AQNAIA--MMNGCQ 307 (327)
Q Consensus 242 ~~l~v~nL----p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~----~~~----A~~A~~--~l~g~~ 307 (327)
..|||+|| |+.+++++|+++|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 889988 789999
Q ss_pred eCCcEEEEEEccC
Q 020372 308 LGGKKLKVQLKRD 320 (327)
Q Consensus 308 i~g~~l~v~~~~~ 320 (327)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998664
No 150
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1.5e-18 Score=127.33 Aligned_cols=83 Identities=23% Similarity=0.405 Sum_probs=76.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 313 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l 313 (327)
..++++|||+|||+.+++++|+ ++|++||.|.++++.. +++++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567999999999999999999 9999999999998873 57789999999999999999999999999999999
Q ss_pred EEEEccCCCC
Q 020372 314 KVQLKRDNKQ 323 (327)
Q Consensus 314 ~v~~~~~~~~ 323 (327)
+|++++++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988654
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-19 Score=133.33 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=76.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
....++|||+|||+.+++++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|.+|+. +|+..++||.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 446789999999999999999999999998 89999999985 9999999999999999999999 899999999999
Q ss_pred EEEccCC
Q 020372 315 VQLKRDN 321 (327)
Q Consensus 315 v~~~~~~ 321 (327)
|.++..+
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9987653
No 152
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.1e-18 Score=120.86 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=71.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-cCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~ 316 (327)
..+.++|||+|||..+++++|+++|++||.|.++++..+ +|||||+|.+.++|.+|+..| +|..++|++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999999863 689999999999999999998 9999999999999
Q ss_pred Ecc
Q 020372 317 LKR 319 (327)
Q Consensus 317 ~~~ 319 (327)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 153
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=1.8e-18 Score=146.87 Aligned_cols=81 Identities=26% Similarity=0.373 Sum_probs=76.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..++|||+||++.+++++|+++|++|| .|.+|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred ccC
Q 020372 318 KRD 320 (327)
Q Consensus 318 ~~~ 320 (327)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 764
No 154
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=5.9e-19 Score=123.04 Aligned_cols=75 Identities=16% Similarity=0.363 Sum_probs=71.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
+|||+|||+.+++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++. ++..++|++|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999995 999999999999875
No 155
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=124.55 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=71.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC-ceeCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG-CQLGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v 315 (327)
....++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345689999999999999999999999999 6655553 478999999999999999999999 9999999999
Q ss_pred EEccCCCCC
Q 020372 316 QLKRDNKQN 324 (327)
Q Consensus 316 ~~~~~~~~~ 324 (327)
++++++..+
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999887654
No 156
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.2e-18 Score=129.08 Aligned_cols=83 Identities=28% Similarity=0.449 Sum_probs=76.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+.+++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3356899999999999999999999999999999999998 99999999999999999999999 99999999999998
Q ss_pred ccCCCC
Q 020372 318 KRDNKQ 323 (327)
Q Consensus 318 ~~~~~~ 323 (327)
+..+..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876544
No 157
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=4.8e-18 Score=127.03 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=72.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020372 318 KRDNKQN 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++++..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9877643
No 158
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.5e-20 Score=139.27 Aligned_cols=87 Identities=21% Similarity=0.402 Sum_probs=81.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 309 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~ 309 (327)
..+.++|||+|||+.+++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|++.|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999999 999999878999999999999999999999999999999
Q ss_pred CcEEEEEEccCCCCC
Q 020372 310 GKKLKVQLKRDNKQN 324 (327)
Q Consensus 310 g~~l~v~~~~~~~~~ 324 (327)
|++|+|++++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999877554
No 159
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.6e-19 Score=133.39 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=73.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCe----eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRV----LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 314 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i----~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 314 (327)
...++|||+|||+.+++++|+++|++||.| ..|+|+.++ +|+++|||||+|.+.++|++|++. |+..|+||.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 356899999999999999999999999975 689999985 999999999999999999999996 99999999999
Q ss_pred EEEccC
Q 020372 315 VQLKRD 320 (327)
Q Consensus 315 v~~~~~ 320 (327)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987653
No 160
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=126.86 Aligned_cols=72 Identities=18% Similarity=0.434 Sum_probs=65.4
Q ss_pred CCcCCCHHHHHHHhcccCC--eeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCc---cCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGT--IKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH---KMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~--i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~---~~~g~~~~l~v~~a~~ 75 (327)
||+++||++|+++|++||. |.+|++++|+ +|++||||||+|.+.++|++|++.|||.. .++| |+|+|.||+.
T Consensus 17 L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G--r~i~V~~Aks 94 (95)
T 2lkz_A 17 IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG--KTIGVDFAKS 94 (95)
T ss_dssp CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--EEEEEEECCC
T ss_pred CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--EEEEEEEccC
Confidence 8999999999999999995 6799999997 89999999999999999999999999974 3566 6699999974
No 161
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-19 Score=128.11 Aligned_cols=73 Identities=19% Similarity=0.426 Sum_probs=66.3
Q ss_pred CCcCCCHHHHHHHhcccC-CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYG-TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G-~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++|| .|.+|+|++|+ +|++||||||+|.+.++|++|++.+++...++| |+|+|.+|.++
T Consensus 9 Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~~a~~~ 83 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMHYSDPK 83 (91)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEECCCSC
T ss_pred CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEEEcCCC
Confidence 899999999999999999 89999999996 899999999999999999999998865544666 66999999875
No 162
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=1.2e-18 Score=133.12 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=73.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCee--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVL--SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~--~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
....++|||+|||+.+++++|+++|++| .|. .|+|+.++. |+++|||||+|.+.++|++|++. ++..|+||.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3457899999999999999999999999 566 899999985 99999999999999999999995 789999999999
Q ss_pred EEccCC
Q 020372 316 QLKRDN 321 (327)
Q Consensus 316 ~~~~~~ 321 (327)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 163
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=4.2e-18 Score=128.98 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=75.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..++++|||+|||+.+++++|+++|++||.|.+++++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999864 45699999999999999999999999999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
++++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 88643
No 164
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=1.2e-17 Score=140.63 Aligned_cols=83 Identities=25% Similarity=0.401 Sum_probs=78.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+|+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred cCC
Q 020372 319 RDN 321 (327)
Q Consensus 319 ~~~ 321 (327)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 165
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.2e-18 Score=124.16 Aligned_cols=79 Identities=27% Similarity=0.530 Sum_probs=71.5
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..+.++|||+|||+ .+++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..|||..+.|++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45689999999998 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred EccCCCCC
Q 020372 317 LKRDNKQN 324 (327)
Q Consensus 317 ~~~~~~~~ 324 (327)
+++++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=1.5e-17 Score=134.23 Aligned_cols=85 Identities=32% Similarity=0.541 Sum_probs=80.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
++++|||+|||..+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999988
Q ss_pred CCCCC
Q 020372 320 DNKQN 324 (327)
Q Consensus 320 ~~~~~ 324 (327)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 167
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=9.7e-19 Score=136.21 Aligned_cols=83 Identities=11% Similarity=0.190 Sum_probs=75.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+++++++|+++|++|| |.+|+|+.++ +++++|||||+|.+.++|++|| .+|+..|+||.|+|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 7799999998 5999999999999999999999 6899999999999999
Q ss_pred ccCCCC
Q 020372 318 KRDNKQ 323 (327)
Q Consensus 318 ~~~~~~ 323 (327)
+..++.
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 877654
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.7e-18 Score=125.41 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=73.6
Q ss_pred CCCCceEEE--eCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee-----CC
Q 020372 238 GPPGANLFI--YHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL-----GG 310 (327)
Q Consensus 238 ~~~~~~l~v--~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i-----~g 310 (327)
..+..+||| +||++.+++++|+++|++||.|.+|.|.. .+|||||+|.+.++|++|++.|||+++ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345789999 66999999999999999999999998763 268999999999999999999999998 79
Q ss_pred cEEEEEEccCCCCCCC
Q 020372 311 KKLKVQLKRDNKQNKP 326 (327)
Q Consensus 311 ~~l~v~~~~~~~~~~p 326 (327)
+.|.|.|++.....+|
T Consensus 96 ~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSGP 111 (114)
T ss_dssp EECEEEEESCCCCSSC
T ss_pred cEEEEEecccCcccCC
Confidence 9999999987766555
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=2.1e-17 Score=133.18 Aligned_cols=83 Identities=35% Similarity=0.572 Sum_probs=79.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
+++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999886
Q ss_pred CCC
Q 020372 321 NKQ 323 (327)
Q Consensus 321 ~~~ 323 (327)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 643
No 170
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=1.5e-17 Score=123.87 Aligned_cols=75 Identities=45% Similarity=0.773 Sum_probs=70.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.|+++++|+++|||||+|.+.++|++|++.|||..+.+|..++|+|.+++.+
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 23 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTD 97 (105)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccC
Confidence 899999999999999999999999999999999999999999999999999999998877665567999999876
No 171
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=117.95 Aligned_cols=74 Identities=24% Similarity=0.439 Sum_probs=66.3
Q ss_pred CCce-EEEeCCCCCCCHHH----HHHHhhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 020372 240 PGAN-LFIYHIPQEFGDQE----LGNAFQAF-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 313 (327)
Q Consensus 240 ~~~~-l~v~nLp~~~t~~~----L~~~F~~~-G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l 313 (327)
++.| |||+|||+.+++++ |+++|++| |.|..| ++ |+|||+|.+.++|.+|++.|+|..+.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4555 99999999999987 55899999 599988 33 999999999999999999999999999999
Q ss_pred EEEEccCCCC
Q 020372 314 KVQLKRDNKQ 323 (327)
Q Consensus 314 ~v~~~~~~~~ 323 (327)
+|.+++.+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999997753
No 172
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=1.1e-17 Score=136.22 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=79.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..++++|||+|||+.+++++|+++|++||.|..|.|..++ +++++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87654
No 173
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=121.16 Aligned_cols=80 Identities=30% Similarity=0.321 Sum_probs=72.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
...++|||+|||+.+++++|+++|++||.|.++ .++.++.+ |.|||+|.+.++|.+|+..|||..|+|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999 58777643 4499999999999999999999999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
++++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 99874
No 174
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-17 Score=119.22 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=72.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
..+.++|||+|| .+++++|+++|++||.|..|+|. +++|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345789999996 89999999999999999999884 3678999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020372 318 KRDNKQNK 325 (327)
Q Consensus 318 ~~~~~~~~ 325 (327)
++++....
T Consensus 84 a~~~~~~~ 91 (97)
T 1x5p_A 84 ARKQPMLD 91 (97)
T ss_dssp CSSCCCCC
T ss_pred CCCCCCCC
Confidence 98776543
No 175
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=120.38 Aligned_cols=79 Identities=25% Similarity=0.464 Sum_probs=70.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||+.+++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|.+|+. |||..|+|+.|+|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 55655665 99999999999999999 99999999999999987
Q ss_pred CCCCC
Q 020372 320 DNKQN 324 (327)
Q Consensus 320 ~~~~~ 324 (327)
++...
T Consensus 81 ~~~~~ 85 (94)
T 2e5g_A 81 QKEFQ 85 (94)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 66544
No 176
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=2.3e-17 Score=130.72 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=70.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEcc
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLKR 319 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~~ 319 (327)
.+|||+||++.+++++|+++|++||.|.+|+|..++ ++|||||+|.+.++|++|++.|||..|.| ++|+|+|++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 578999999999999999999999999999987542 68999999999999999999999999965 999999999
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 774
No 177
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=5e-18 Score=122.70 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=63.9
Q ss_pred CCcCCCHHHHHHHhcccC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G--~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 78 (327)
||+++||++|+++|++|| .|.+|++++|+ +|+++|||||+|.+.++|++|++.|||.. +.| |.|+|.++.++..
T Consensus 9 L~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~-~~g--r~i~V~~~~~~~~ 85 (90)
T 3p5t_L 9 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPVVTPSNKLEH 85 (90)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC-SSS--CCCEECCC-----
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe-eCC--EEEEEEECCCCcc
Confidence 899999999999999999 99999999996 89999999999999999999999999986 555 5699999987643
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=4.7e-17 Score=124.26 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=70.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEc
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF-GFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 318 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~-afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~ 318 (327)
-.|||+||++.+|+++|+++|++||.|.+|++..+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46779999999999999999999999999988764 3677 9999999999999999999999988 99999999
Q ss_pred cCCCC
Q 020372 319 RDNKQ 323 (327)
Q Consensus 319 ~~~~~ 323 (327)
++++-
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87653
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=4.3e-17 Score=120.83 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=73.6
Q ss_pred CCCCceEEEeCCCC-----CCCHHHHHHHhhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCceeCCc
Q 020372 238 GPPGANLFIYHIPQ-----EFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 311 (327)
Q Consensus 238 ~~~~~~l~v~nLp~-----~~t~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~ 311 (327)
..++++|+|+||.. +-++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|.+|+..|||+.++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999973 2368999999999999999999998644 68999999999999999999999999999999
Q ss_pred EEEEEEccC
Q 020372 312 KLKVQLKRD 320 (327)
Q Consensus 312 ~l~v~~~~~ 320 (327)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 180
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=124.97 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=70.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||+.+++++|+++|++||.|.+|.|.. .+|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998864 46899999999999999999999999999999999987
Q ss_pred CC
Q 020372 320 DN 321 (327)
Q Consensus 320 ~~ 321 (327)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 181
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=4.1e-18 Score=134.26 Aligned_cols=85 Identities=21% Similarity=0.368 Sum_probs=74.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEE------EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCc
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA------KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 311 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v------~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~ 311 (327)
..++++|||+|||+.+++++|+++|++||.|..+ .+... .+++++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3457899999999999999999999999998774 12222 3788999999999999999999999999999999
Q ss_pred EEEEEEccCCCC
Q 020372 312 KLKVQLKRDNKQ 323 (327)
Q Consensus 312 ~l~v~~~~~~~~ 323 (327)
.|+|.++++...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999986543
No 182
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=3.1e-17 Score=118.01 Aligned_cols=75 Identities=27% Similarity=0.366 Sum_probs=69.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
..++|||+|||+.+++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..++|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 478999999999999999999999999999999999986
Q ss_pred CC
Q 020372 320 DN 321 (327)
Q Consensus 320 ~~ 321 (327)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 183
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=117.79 Aligned_cols=72 Identities=25% Similarity=0.523 Sum_probs=65.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+++.+
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~~a~~k 86 (87)
T 3bs9_A 14 LSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG--RQIRTNWATRK 86 (87)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEEEC--
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEecCCC
Confidence 79999999999999999999999999996 89999999999999999999999999976 555 66999999765
No 184
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=3.8e-17 Score=116.13 Aligned_cols=72 Identities=21% Similarity=0.472 Sum_probs=66.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 9 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g--~~l~v~~a~~~ 81 (83)
T 3md1_A 9 LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-NG--RPLRINWAAKL 81 (83)
T ss_dssp CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE-TT--EECEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee-CC--cEEEEEecCcC
Confidence 89999999999999999999999999995 899999999999999999999999999874 55 66999999875
No 185
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=1.9e-17 Score=123.47 Aligned_cols=75 Identities=37% Similarity=0.685 Sum_probs=69.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||++|+++|++||.|.+|++++++ +|+++|||||+|.+.++|++|++.|||..++.+..+.|+|.++..+
T Consensus 21 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 21 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE 96 (106)
T ss_dssp CCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcc
Confidence 89999999999999999999999999996 7999999999999999999999999998876555578999999875
No 186
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=4.4e-17 Score=117.32 Aligned_cols=79 Identities=18% Similarity=0.364 Sum_probs=63.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCce--eCCcEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ--LGGKKLK 314 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~--i~g~~l~ 314 (327)
...+.++|||+|||+++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+ +++.. +.|++|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3556799999999999999999999999999999999864 68999999999999983 56665 4699999
Q ss_pred EEEccCCCCC
Q 020372 315 VQLKRDNKQN 324 (327)
Q Consensus 315 v~~~~~~~~~ 324 (327)
|++++++..+
T Consensus 78 v~~a~~k~~~ 87 (89)
T 3d2w_A 78 ISNAEPKHNK 87 (89)
T ss_dssp EEECC-----
T ss_pred EEEcCCCCcC
Confidence 9999887643
No 187
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=119.94 Aligned_cols=72 Identities=25% Similarity=0.449 Sum_probs=67.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.++++++|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++.++
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 96 (100)
T 2do4_A 25 LPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMT-IKE--NIIKVAISNSG 96 (100)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEE-SSS--CEEEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEEECCCC
Confidence 8999999999999999999999999999999999999999999999999999999976 555 56999999875
No 188
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=2.5e-17 Score=124.61 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=67.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcE-----EE
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK-----LK 314 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~-----l~ 314 (327)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|+|++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999754 89999999999999999999999999998 88
Q ss_pred EEEccCCCC
Q 020372 315 VQLKRDNKQ 323 (327)
Q Consensus 315 v~~~~~~~~ 323 (327)
|..+.++..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 887665543
No 189
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=117.77 Aligned_cols=72 Identities=29% Similarity=0.528 Sum_probs=66.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|++++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 13 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a~~~ 85 (95)
T 2dnz_A 13 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE-LAG--RPMRVGHVTER 85 (95)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC-SSS--SCCEEEESSCC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe-eCC--cEEEEEEcccc
Confidence 89999999999999999999999999996 79999999999999999999999999976 455 56999999876
No 190
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=2.3e-17 Score=115.91 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
|++++||++|+++|.+||+|.++++.. +||||||+|.++++|++|++.|||..+. | |+|+|.+|.
T Consensus 15 L~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~-g--r~I~V~~A~ 79 (89)
T 2wbr_A 15 LTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLA-N--TTIFAESPS 79 (89)
T ss_dssp CCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEET-T--EEEEEECCC
T ss_pred CCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEEC-C--cEEEEEECC
Confidence 789999999999999999999999976 5999999999999999999999998754 4 779999994
No 191
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=118.53 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=66.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||+++|+++|+++|++||.|.+|+++++++|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.+++.
T Consensus 24 lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~V~~a~~ 94 (95)
T 2ywk_A 24 LEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL-YG--RPINVSGPSS 94 (95)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE-TT--EECEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE-CC--CEEEEEEcCC
Confidence 89999999999999999999999999998899999999999999999999999999874 45 6699999864
No 192
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=9.3e-17 Score=133.04 Aligned_cols=84 Identities=23% Similarity=0.348 Sum_probs=77.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+.+++++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 44678999999999999999999999999999999999988999999999999999999999986 99999999999999
Q ss_pred ccCCC
Q 020372 318 KRDNK 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
+..+.
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87654
No 193
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=2.4e-17 Score=121.54 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=67.2
Q ss_pred CCc------CCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPK------NVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~------~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
||+ ++++++|+++|++||.|.+|+|++++ +|+++|||||+|.+.++|++|++.|||.. +.|. +.|+|.++.
T Consensus 14 Lp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~-~~g~-r~l~V~~a~ 91 (100)
T 3ns6_A 14 APVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR-LDLK-HRLFLYTMK 91 (100)
T ss_dssp CCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB-SSSS-CBCEEEESH
T ss_pred CCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc-cCCC-eEEEEEECc
Confidence 788 99999999999999999999999997 69999999999999999999999999987 4451 459999997
Q ss_pred ChHH
Q 020372 75 TEKE 78 (327)
Q Consensus 75 ~~~~ 78 (327)
++..
T Consensus 92 ~~~~ 95 (100)
T 3ns6_A 92 DVER 95 (100)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6543
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=7.7e-17 Score=134.56 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=72.0
Q ss_pred CCceEEEeCCC-CCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 240 PGANLFIYHIP-QEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 240 ~~~~l~v~nLp-~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
++++|||+||| +.+++++|+++|++||.|.+|+|+.+ .+|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3799999999999999999999999999999999998
Q ss_pred cCC
Q 020372 319 RDN 321 (327)
Q Consensus 319 ~~~ 321 (327)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 743
No 195
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=4.6e-17 Score=116.23 Aligned_cols=70 Identities=30% Similarity=0.472 Sum_probs=64.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~-~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
||+++|+++|+++|++||.|.+|.++++ .+|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.+++
T Consensus 15 l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~v~~ak 85 (85)
T 3mdf_A 15 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FG--RTIRVNLAK 85 (85)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECC
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEEEEEcC
Confidence 8999999999999999999999999998 4899999999999999999999999999875 55 669999984
No 196
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=7.4e-17 Score=117.98 Aligned_cols=75 Identities=21% Similarity=0.385 Sum_probs=68.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
||+++|+++|+++|++||.|.+|++++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+...
T Consensus 10 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 10 IPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ-LGS--RFLKCGYSSNSDIS 85 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEECSCSSGG
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEEEcCCCCCC
Confidence 79999999999999999999999999996 79999999999999999999999999987 455 67999999887543
No 197
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=123.25 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=65.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT---GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
...++|||+|||+.+++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 888888766 7999999999999999999999983 255555555
Q ss_pred EE
Q 020372 316 QL 317 (327)
Q Consensus 316 ~~ 317 (327)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 198
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=6.5e-16 Score=117.41 Aligned_cols=74 Identities=24% Similarity=0.283 Sum_probs=67.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhcCceeCC--cEEEEEEcc
Q 020372 243 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF-GFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLKR 319 (327)
Q Consensus 243 ~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~-afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~~ 319 (327)
.|||+||++.+++++|+++|++||.|.+|+|.. + +|| |||+|.+.++|..|++.|||..|.| +.|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 367999999999999999999999999999864 2 286 9999999999999999999999987 699999998
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 774
No 199
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=117.71 Aligned_cols=70 Identities=29% Similarity=0.455 Sum_probs=64.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeE--------EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEe
Q 020372 2 LPKNVSEAEVSALFSIYGTIKD--------LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 72 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~--------v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 72 (327)
||+++|++||+++|++||.|.+ |++++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+
T Consensus 21 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V~~ 97 (99)
T 2la6_A 21 LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE-FSG--NPIKVSF 97 (99)
T ss_dssp CCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB-SSS--SBCEEEE
T ss_pred CCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE-eCC--cEEEEEe
Confidence 8999999999999999999999 9999996 89999999999999999999999999986 455 5699998
Q ss_pred CC
Q 020372 73 AD 74 (327)
Q Consensus 73 a~ 74 (327)
|+
T Consensus 98 A~ 99 (99)
T 2la6_A 98 AT 99 (99)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 200
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=126.93 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=68.6
Q ss_pred CCcCCCHHHHHHHhcccC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G--~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 78 (327)
||+++||+||+++|+.|| .|.+|+|++|+ +|+++|||||+|.+.++|++||+.|||.. ++| +.|+|.++..+..
T Consensus 63 Lp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~-~~G--r~l~V~~a~~~~~ 139 (156)
T 3n9u_C 63 FSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV-LNG--EKVDVRPATRQNL 139 (156)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE-ETT--EECEEEECCHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEeEEEEcCCCcc
Confidence 899999999999999999 99999999996 89999999999999999999999999987 555 6799999987654
Q ss_pred H
Q 020372 79 R 79 (327)
Q Consensus 79 ~ 79 (327)
.
T Consensus 140 ~ 140 (156)
T 3n9u_C 140 S 140 (156)
T ss_dssp H
T ss_pred h
Confidence 3
No 201
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=117.21 Aligned_cols=70 Identities=29% Similarity=0.453 Sum_probs=64.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.+|+
T Consensus 24 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~v~~ak 94 (94)
T 2e5h_A 24 LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL-FG--RVIKASIAI 94 (94)
T ss_dssp CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE-TT--EEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee-CC--cEEEEEecC
Confidence 89999999999999999999999999996 689999999999999999999999999764 45 669999984
No 202
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.9e-17 Score=117.01 Aligned_cols=71 Identities=30% Similarity=0.467 Sum_probs=65.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.+++.
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~v~~a~~ 94 (95)
T 2cqc_A 23 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL-DG--RRIRVSGPSS 94 (95)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE-TT--EEEEEECCSC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CC--EEEEEEecCC
Confidence 89999999999999999999999999996 789999999999999999999999999764 55 6699999864
No 203
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.5e-16 Score=128.00 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=75.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccCC
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 321 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 321 (327)
++|||+|||..+++++|+++|++||.|.+++++.++ +++++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999997 6889999999999999999999999999999999999998766
Q ss_pred CC
Q 020372 322 KQ 323 (327)
Q Consensus 322 ~~ 323 (327)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 204
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=119.15 Aligned_cols=72 Identities=18% Similarity=0.349 Sum_probs=65.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
||+++|+++|+++|++||.|.+|.|+++++|+++|||||+|.+.++|.+|++ ++|.. ++| +.|+|.++....
T Consensus 19 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~-~~g--r~l~V~~~~~~~ 90 (103)
T 1s79_A 19 FPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQK-YKE--TDLLILFKDDYF 90 (103)
T ss_dssp CCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCC-CTT--TTCEEEEHHHHH
T ss_pred CCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCE-ECC--EEEEEEEchHHH
Confidence 8999999999999999999999999999889999999999999999999998 89876 556 569999886643
No 205
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.7e-17 Score=119.20 Aligned_cols=72 Identities=26% Similarity=0.541 Sum_probs=67.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~v~~a~~~ 95 (103)
T 2cq0_A 23 LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY-DH--LILNVEWAKPS 95 (103)
T ss_dssp CCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE-TT--EECEEEESSCC
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee-CC--cEEEEEECCCC
Confidence 89999999999999999999999999996 899999999999999999999999999874 45 66999999875
No 206
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=118.38 Aligned_cols=72 Identities=29% Similarity=0.450 Sum_probs=67.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a~~~ 88 (99)
T 1whw_A 16 LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV-FQG--RMLHVLPSTIK 88 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE-SSS--CEEEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEEEcCCC
Confidence 89999999999999999999999999997 89999999999999999999999999976 455 56999999886
No 207
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=117.16 Aligned_cols=71 Identities=21% Similarity=0.485 Sum_probs=65.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++ |||.. +.| +.|+|.++..+
T Consensus 18 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g--~~l~V~~a~~~ 89 (99)
T 2dgs_A 18 IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD-IMG--KKVEVKRAEPR 89 (99)
T ss_dssp CCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB-SSS--CBCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE-ECC--eEEEEEECCCC
Confidence 89999999999999999999999999996 79999999999999999999998 99976 555 56999999876
No 208
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.68 E-value=8.9e-17 Score=121.64 Aligned_cols=72 Identities=21% Similarity=0.390 Sum_probs=67.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|+|++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.+++.+
T Consensus 33 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~V~~a~~~ 105 (115)
T 2cpz_A 33 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI-GM--KRLKVQLKRSK 105 (115)
T ss_dssp CCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE-TT--EECEEECCCCS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE-CC--EEEEEEEcCCC
Confidence 89999999999999999999999999997 899999999999999999999999999874 45 66999999876
No 209
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=9.3e-17 Score=121.63 Aligned_cols=72 Identities=26% Similarity=0.485 Sum_probs=67.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.++++++|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+++.+
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-~~g--~~l~V~~a~~~ 86 (116)
T 2fy1_A 15 LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKS-LHG--KAIKVEQAKKP 86 (116)
T ss_dssp CTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCB-CSS--SBCEEEECCCS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEEECCCC
Confidence 8999999999999999999999999999999999999999999999999999999987 455 56999999875
No 210
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=118.61 Aligned_cols=78 Identities=27% Similarity=0.505 Sum_probs=70.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 80 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 80 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+....
T Consensus 16 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~v~~a~~~~~~~ 92 (104)
T 1p1t_A 16 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF-SG--RALRVDNAASEKNKE 92 (104)
T ss_dssp CCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC-SS--SCBEEEETTCTTHHH
T ss_pred CCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CC--cEEEEEeCCCccchh
Confidence 89999999999999999999999999996 899999999999999999999999999764 55 569999999876654
Q ss_pred HH
Q 020372 81 AR 82 (327)
Q Consensus 81 ~~ 82 (327)
..
T Consensus 93 ~~ 94 (104)
T 1p1t_A 93 EL 94 (104)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 211
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=117.83 Aligned_cols=71 Identities=27% Similarity=0.460 Sum_probs=66.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~V~~a~~~ 93 (103)
T 2d9p_A 23 LDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV-AT--KPLYVALAQRK 93 (103)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBS-SS--SBCEEEECSSC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEe-CC--cEEEEEEeccc
Confidence 8999999999999999999999999999 899999999999999999999999999874 55 56999999876
No 212
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=118.50 Aligned_cols=72 Identities=29% Similarity=0.574 Sum_probs=66.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 31 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a~~~ 103 (106)
T 1p27_B 31 VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--QPISVDWCFVR 103 (106)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB-SSS--SBCEEEESEES
T ss_pred CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE-ECC--cEEEEEeecCC
Confidence 89999999999999999999999999996 79999999999999999999999999986 455 56999999765
No 213
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=118.93 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=67.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 95 (105)
T 1x5u_A 23 LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-LYG--KPIRVNKASAH 95 (105)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-CSS--CBCEEEETTTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEEECCCC
Confidence 89999999999999999999999999997 89999999999999999999999999977 455 56999999876
No 214
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=1.6e-16 Score=120.21 Aligned_cols=72 Identities=24% Similarity=0.519 Sum_probs=67.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a~~~ 95 (115)
T 2dgo_A 23 LSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG--RQIRTNWATRK 95 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE-ETT--EECEEEESSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEEEccCC
Confidence 89999999999999999999999999996 89999999999999999999999999977 455 66999999876
No 215
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=119.00 Aligned_cols=72 Identities=31% Similarity=0.524 Sum_probs=66.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 34 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-i~g--~~l~V~~a~~k 106 (108)
T 2jrs_A 34 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE-LAG--RPMKVGHVTER 106 (108)
T ss_dssp CCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC-SSS--SCCEEECSCSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEEEcccC
Confidence 89999999999999999999999999995 89999999999999999999999999976 455 56999999875
No 216
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.2e-17 Score=118.83 Aligned_cols=72 Identities=29% Similarity=0.537 Sum_probs=66.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|++++++ +++++|||||+|.+.++|++|++.|||.. +.| +.|+|.+++.+
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~~a~~~ 92 (102)
T 1x5s_A 20 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS-VDG--RQIRVDQAGKS 92 (102)
T ss_dssp CCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC-TTS--CCCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEEECCCC
Confidence 89999999999999999999999999996 88999999999999999999999999987 455 56999999775
No 217
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=1.7e-16 Score=118.48 Aligned_cols=70 Identities=30% Similarity=0.476 Sum_probs=65.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
||+++|+++|+++|++||.|.+|.++++++|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++.
T Consensus 37 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~V~~a~ 106 (107)
T 3ulh_A 37 LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL-DG--RPMNIQLVT 106 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999875 55 669999875
No 218
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=1.2e-16 Score=123.22 Aligned_cols=72 Identities=31% Similarity=0.514 Sum_probs=66.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|++||.|.+|++++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 54 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~-i~g--~~l~V~~a~~~ 126 (129)
T 2kxn_B 54 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDG--RRIRVDFSITK 126 (129)
T ss_dssp CTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC-SSS--SCCEESCCSSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEEEecCC
Confidence 89999999999999999999999999996 78999999999999999999999999976 455 56999999875
No 219
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=118.61 Aligned_cols=72 Identities=26% Similarity=0.465 Sum_probs=66.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+++..
T Consensus 21 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V~~a~~~ 93 (103)
T 2dnm_A 21 LTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE-LDG--RELRVQVARYG 93 (103)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC-BTT--BCCEEEECSSC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE-ECC--cEEEEEECCcC
Confidence 89999999999999999999999999996 79999999999999999999999999977 555 56999999865
No 220
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.6e-17 Score=119.27 Aligned_cols=72 Identities=29% Similarity=0.441 Sum_probs=66.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|++|.+++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~V~~a~~~ 92 (102)
T 2cqb_A 20 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FG--RTIRVNLAKPM 92 (102)
T ss_dssp CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE-TT--EEEEEEECCCC
T ss_pred CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEEEEeCCCC
Confidence 89999999999999999999999999995 899999999999999999999999999764 45 67999999876
No 221
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=119.13 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=66.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.|+++++|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.+++..
T Consensus 23 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~v~~a~~~ 94 (114)
T 2do0_A 23 LDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL-FD--RPMHVKMDERA 94 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe-CC--CEEEEEEcccC
Confidence 89999999999999999999999999999999999999999999999999999999875 45 66999999754
No 222
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=118.84 Aligned_cols=75 Identities=29% Similarity=0.519 Sum_probs=67.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC-----CcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG-----SSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g-----~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|+++++++|+++|||||+|.+.++|++|++.|||..+... ..++|+|.|++++
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 33 LPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 89999999999999999999999999999999999999999999999999999999875311 1377999999864
No 223
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=2.6e-16 Score=119.95 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=70.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.+.++|||+|| .+++++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 69999999999999999999885 36799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020372 319 RDNKQNK 325 (327)
Q Consensus 319 ~~~~~~~ 325 (327)
+++....
T Consensus 109 ~~~~~~~ 115 (121)
T 2bz2_A 109 RKQPMLD 115 (121)
T ss_dssp CSSCC--
T ss_pred CCCCCCC
Confidence 9876543
No 224
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=8.5e-17 Score=111.99 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=62.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++ |||.. +.| +.|+|.+|
T Consensus 7 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g--~~l~v~~A 75 (75)
T 2mss_A 7 LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE-INN--KMVECKKA 75 (75)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC-SSS--CCCEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE-ECC--EEEEEEeC
Confidence 89999999999999999999999999997 89999999999999999999998 89976 555 56999875
No 225
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.7e-17 Score=117.57 Aligned_cols=72 Identities=31% Similarity=0.484 Sum_probs=66.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEE-EEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDL-QILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v-~~~~~-~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+| +++++ .+|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~v~~a~~~ 86 (96)
T 1x5t_A 13 LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL-CN--RPITVSYAFKK 86 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE-TT--EECEEEESCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE-CC--EEEEEEEeccc
Confidence 89999999999999999999999 99999 4899999999999999999999999999874 45 67999999875
No 226
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=1.3e-16 Score=134.32 Aligned_cols=83 Identities=33% Similarity=0.476 Sum_probs=75.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred CCC
Q 020372 320 DNK 322 (327)
Q Consensus 320 ~~~ 322 (327)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 554
No 227
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.1e-17 Score=115.51 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=67.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
++++|||+|||+.+++++|+++|++||.|.+++|+.+ ++|||||+|.+.++|++|+.. ...+.|++|+|.+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 5789999999999999999999999999999999764 689999999999999754332 335589999999998
Q ss_pred CCCCC
Q 020372 320 DNKQN 324 (327)
Q Consensus 320 ~~~~~ 324 (327)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 228
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=117.20 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=66.2
Q ss_pred CCcCCCHHHHHHHhcccCCee-EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCc--ccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIK-DLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS--VPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~-~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~--~~l~v~~a~~~ 76 (327)
||+++||++|+++|++||.|. +|++++++ +|+++|||||+|.+.++|++|++.|||..+ .|+. +.|+|.++...
T Consensus 17 Lp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 17 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL-PGATPAKRFKLNYATYS 94 (99)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE-SSCSSCEECCEEETTCC
T ss_pred CCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc-CCCCcceeEEEeecCCC
Confidence 899999999999999999999 99999997 899999999999999999999999999764 4532 12999999764
No 229
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=117.38 Aligned_cols=72 Identities=31% Similarity=0.651 Sum_probs=66.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeC-C-CCCcccEEEEEeCCHHHHHHHHHHh-cCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-S-QQTSKGCAFLKYETKEQALAALEAI-NGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~-~-~g~skG~afV~F~~~e~A~~Ai~~l-~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.++++ + +|+++|||||+|.+.++|++|++.| ||.. +.| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~~g--~~l~v~~a~~~ 97 (107)
T 2cph_A 23 IPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH-LYG--RRLVLEWADSE 97 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB-SSS--CBCEEEECCCC
T ss_pred CCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe-ECC--CEEEEEeCCCC
Confidence 8999999999999999999999999998 4 8999999999999999999999999 8976 455 56999999875
No 230
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=2.7e-16 Score=113.19 Aligned_cols=71 Identities=23% Similarity=0.355 Sum_probs=65.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|+ .|||.. +.| +.|+|.+++..
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~-~~g--~~l~V~~a~~~ 85 (89)
T 3ucg_A 14 VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL-FRG--RQIKVIPKRTN 85 (89)
T ss_dssp CCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE-ETT--EECEEEETTTT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE-ECC--cEEEEEEccCC
Confidence 89999999999999999999999999996 8999999999999999999999 999987 455 66999999764
No 231
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=117.56 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=67.4
Q ss_pred CCcCCCHHHHHHHhcc-cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSI-YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~-~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+. ||.|.+|.|+++++|+++|||||+|.+.++|.+|++.|||..++.| +.|+|.++..+
T Consensus 17 Lp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g--~~l~v~~a~~~ 90 (104)
T 2dhg_A 17 LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS--KPVRLSVAIPK 90 (104)
T ss_dssp CCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--SCCCCCBCCCC
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC--EeEEEEEccCC
Confidence 8999999999999999 9999999999999999999999999999999999999999763555 56999999765
No 232
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=3.1e-16 Score=113.66 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=65.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+.++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+++..
T Consensus 16 lp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~~a~~~ 86 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMK-LSG--REIDVRIDRNA 86 (92)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCC-BTT--BCCCCEECSCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEEEcCCC
Confidence 8999999999999999999999999985 78999999999999999999999999987 455 56999999775
No 233
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=2.6e-16 Score=118.06 Aligned_cols=72 Identities=36% Similarity=0.560 Sum_probs=66.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 34 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V~~a~~~ 106 (110)
T 1oo0_B 34 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MG--QTIQVDWCFVK 106 (110)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEESEES
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE-CC--cEEEEEEcccC
Confidence 89999999999999999999999999996 899999999999999999999999999875 45 66999999765
No 234
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=3.5e-16 Score=112.08 Aligned_cols=72 Identities=25% Similarity=0.473 Sum_probs=66.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCce
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQAF----G-------RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ 307 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~ 307 (327)
.+.++|||+|||+.+++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 8999988754 689999999999999999 999999
Q ss_pred eCCcEEEEEE
Q 020372 308 LGGKKLKVQL 317 (327)
Q Consensus 308 i~g~~l~v~~ 317 (327)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 235
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.4e-16 Score=123.60 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=66.0
Q ss_pred CCcCCCHHHHHHHhcccCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~---i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
||+++||+||+++|+.||. |.+|+|++|++|+++|||||+|.+.++|++||+ |||.. ++| |.|+|.++..+.
T Consensus 52 Lp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~-l~g--r~i~V~~a~~~e 126 (136)
T 2hgl_A 52 LPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRES-MGH--RYIEVFKSHRTE 126 (136)
T ss_dssp CCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEE-SSS--SEEEEEECCHHH
T ss_pred CCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCE-ECC--EEEEEEECChHH
Confidence 8999999999999999999 899999999889999999999999999999999 99976 555 669999997553
No 236
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-16 Score=117.50 Aligned_cols=68 Identities=28% Similarity=0.513 Sum_probs=60.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-ccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~-~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++||+|++|+|+++ ||||||+|++.++|++|++.|++. ..+.| |+|+|.++..+
T Consensus 24 Lp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r~l~V~~A~~~ 92 (105)
T 1sjq_A 24 LPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QPIYIQFSNHK 92 (105)
T ss_dssp CCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETT--EECCBCCCSSS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--EEEEEEEcCCC
Confidence 8999999999999999999999999986 799999999999999999998752 33556 67999999875
No 237
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=117.38 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=63.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|+.| .|.+|+|++|++|+++|||||+|.+.++|++|+ .+||.. ++| |.|+|..+..+
T Consensus 24 Lp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~-~~g--r~i~V~~a~~~ 93 (109)
T 2dnn_A 24 MPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRML-MIQ--RYVEVSPATER 93 (109)
T ss_dssp CCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEE-ETT--EEEEEEECCHH
T ss_pred CCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCe-ECC--eEEEEEECCcc
Confidence 89999999999999999 899999999989999999999999999999999 689965 555 67999988654
No 238
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.2e-16 Score=114.98 Aligned_cols=71 Identities=27% Similarity=0.474 Sum_probs=65.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|+|+++..+ ++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~v~~a~~~ 93 (103)
T 2cq3_A 23 IPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV-EG--RKIEVNNATAR 93 (103)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEE-TT--EECEEEECCSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEE-CC--EEEEEEEcccC
Confidence 8999999999999999999999999998755 899999999999999999999999874 55 66999999876
No 239
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=1.5e-16 Score=121.01 Aligned_cols=70 Identities=20% Similarity=0.426 Sum_probs=64.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
||+++|++||+++|++||.|.+|++++++ +|+++|||||+|.+.++|++|++.|||.. ++| +.|+|.+++
T Consensus 48 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V~~ak 118 (118)
T 2khc_A 48 LPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ-VGT--KRLKVQLKK 118 (118)
T ss_dssp SCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE-ETT--EECCEEEC-
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEEecC
Confidence 79999999999999999999999999996 79999999999999999999999999987 455 669999874
No 240
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-16 Score=117.36 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=65.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|++||.|.++.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 23 Lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V~~a~~~ 95 (98)
T 2cqp_A 23 MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RKVKLVLGSGP 95 (98)
T ss_dssp CCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE-ETT--EECEEEESSCS
T ss_pred CCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe-eCC--eEEEEEEcCCC
Confidence 89999999999999999999988888775 89999999999999999999999999986 455 66999999754
No 241
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=3.6e-16 Score=119.37 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=63.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC-AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~-afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|++.+||++|+++|++||.|.+|++.++ ++|| |||+|.+.++|++|++.|||..|.+++ ++|+|.|++.+
T Consensus 36 L~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~-~~LrI~~ak~~ 106 (130)
T 3zzy_A 36 LFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC-CTLRIDFSKLT 106 (130)
T ss_dssp CCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE-EEEEEEECSCS
T ss_pred CCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC-cEEEEEecCCC
Confidence 7899999999999999999999998874 3677 999999999999999999999987765 78999999875
No 242
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=113.76 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=61.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc-CCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK-MEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~-~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++||.|++|+++++ ||||||+|++.++|.+|++.|+|..+ +.| |+|+|.|++.+
T Consensus 29 Lp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~G--r~i~V~~S~~k 97 (100)
T 3r27_A 29 LIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAG--HPAFVNYSTSQ 97 (100)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETT--EEEEEEECSCS
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCC--cEEEEEecccc
Confidence 8999999999999999999999999864 78999999999999999999998752 455 67999999875
No 243
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=117.29 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=62.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|+.||. ++|+|++|++|+++|||||+|.+.++|++||+ +|+.. +.| |.|+|.++...
T Consensus 23 Lp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~g--r~i~V~~~~~~ 92 (102)
T 1wez_A 23 LPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKAN-MQH--RYVELFLNSTA 92 (102)
T ss_dssp CCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCC-SSS--SCCEEEEECCC
T ss_pred CCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCe-ECC--cEEEEEECCCC
Confidence 8999999999999999995 49999999999999999999999999999995 78865 555 56999988764
No 244
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2e-16 Score=120.16 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=65.5
Q ss_pred CCcCCCHHHHHHHhcccCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~---i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|+.||. |.+|+|+++++|+++|||||+|.+.++|++||+ |||.. +.| |.|+|.++..+
T Consensus 25 Lp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~i~V~~a~~~ 98 (118)
T 2db1_A 25 LPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRES-MGH--RYIEVFKSHRT 98 (118)
T ss_dssp CCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEE-ETT--EEEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCe-ECC--eEEEEEECCHH
Confidence 8999999999999999999 899999999889999999999999999999999 99966 555 67999999654
No 245
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=115.59 Aligned_cols=72 Identities=29% Similarity=0.447 Sum_probs=65.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCC--C--CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQ--Q--TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~--g--~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+.++++ | +++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~V~~a~~~ 88 (98)
T 2cpf_A 13 LNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV-DG--HKLEVRISERA 88 (98)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE-TT--EECEEECSSCS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee-CC--eEEEEEEccCC
Confidence 899999999999999999999999998853 4 8999999999999999999999999874 45 66999999875
No 246
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=114.19 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=71.1
Q ss_pred CCCCceEEEeCCCCCCC-----------HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 020372 238 GPPGANLFIYHIPQEFG-----------DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 306 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t-----------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~ 306 (327)
..++++|+|+||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..|||+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45689999999954432 5899999999999999966 544 38999999999999999999999999
Q ss_pred eeCCcEEEEEEccCCCC
Q 020372 307 QLGGKKLKVQLKRDNKQ 323 (327)
Q Consensus 307 ~i~g~~l~v~~~~~~~~ 323 (327)
.|+||.|+|.++.++..
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999887643
No 247
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=117.63 Aligned_cols=72 Identities=29% Similarity=0.490 Sum_probs=66.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhc------CCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN------GKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~------g~~~~~g~~~~l~v~~a~ 74 (327)
||+++|+++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|++|++.|| |.. +.| +.|+|.++.
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~-~~g--~~l~v~~a~ 99 (111)
T 1x4h_A 23 LSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK-LDG--RQLKVDLAV 99 (111)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE-SSS--CEEEEECCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE-EcC--EEEEEEECC
Confidence 89999999999999999999999999996 79999999999999999999999999 865 555 569999998
Q ss_pred Ch
Q 020372 75 TE 76 (327)
Q Consensus 75 ~~ 76 (327)
.+
T Consensus 100 ~~ 101 (111)
T 1x4h_A 100 TR 101 (111)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 248
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1.4e-16 Score=116.25 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=64.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||+++|++||+++|++||.|.++.+++++ +|+++|||||+|.+.++|++|++.|||..+ .| |.|+|.++..
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--r~l~v~~a~s 94 (95)
T 2ek1_A 23 MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI-GS--RKVKLSGPSS 94 (95)
T ss_dssp CCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEECCC-
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE-CC--cEEEEEeccC
Confidence 89999999999999999999988888875 889999999999999999999999999874 45 6699998853
No 249
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=8.5e-16 Score=126.87 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=73.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEccC
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 320 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 320 (327)
.++|||+|||+.+++++|+++|++||.|.+|+|.++. +++++|||||+|.+.++|.+|+..+ +..++|+.|+|.++++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 5899999999999999999999999999999999987 6999999999999999999999875 4599999999999776
Q ss_pred CC
Q 020372 321 NK 322 (327)
Q Consensus 321 ~~ 322 (327)
--
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 250
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.6e-16 Score=115.27 Aligned_cols=71 Identities=30% Similarity=0.494 Sum_probs=64.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|++++++.+ ++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~V~~a~~~ 93 (103)
T 2cqi_A 23 LSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKI-LG--KEVKVNWATTP 93 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEE-TT--EEEEEEECCCT
T ss_pred CCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCc-CC--CeEEEEECCCC
Confidence 8999999999999999999999999998644 799999999999999999999999874 45 67999999875
No 251
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=4.7e-16 Score=119.26 Aligned_cols=72 Identities=26% Similarity=0.469 Sum_probs=67.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+.++++|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+|...
T Consensus 43 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~~a~~~ 114 (124)
T 2kt5_A 43 LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPMDIQLVASQ 114 (124)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEE-SSS--CEEEEEEECCT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCE-ECC--cEEEEEEeCCC
Confidence 7999999999999999999999999999999999999999999999999999999976 555 56999999765
No 252
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=112.84 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=65.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|+.| .|.+|.++++.+|+++|||||+|.+.++|++|++ |||.. +.| |.|+|.++..+
T Consensus 18 Lp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~-~~g--r~i~v~~a~~~ 87 (91)
T 2dgw_A 18 APFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREY-MGG--RYIEVFREKSG 87 (91)
T ss_dssp CCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEE-ETT--EEEEEEEESSC
T ss_pred CCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCce-eCC--cEEEEEECCcC
Confidence 89999999999999999 9999999999999999999999999999999999 99976 455 67999999765
No 253
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=9.2e-16 Score=124.53 Aligned_cols=84 Identities=18% Similarity=0.389 Sum_probs=76.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhcCceeC---CcEEE
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATG--VSKCFGFVSYESPASAQNAIAMMNGCQLG---GKKLK 314 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~--~~~G~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~ 314 (327)
..++|||+|||+.+++++|+++|++||.|.+++++.++.++ +++|||||+|.+.++|.+|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998666 89999999999999999999999998875 68888
Q ss_pred EEEccCCCC
Q 020372 315 VQLKRDNKQ 323 (327)
Q Consensus 315 v~~~~~~~~ 323 (327)
+.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888765543
No 254
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=5.1e-16 Score=122.95 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=63.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|++++||++|+++|++||+|++|++..++ ++|||||+|++.++|++|++.|||..|.+++ +.|+|.|++.+
T Consensus 54 L~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g-~~L~V~~Ak~~ 124 (164)
T 1sjr_A 54 LFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNAC-CTLRIDFSKLT 124 (164)
T ss_dssp CCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSC-SCEEEEECSSS
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCC-cEEEEEEecCC
Confidence 79999999999999999999999997653 5899999999999999999999999876543 67999999875
No 255
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2e-16 Score=119.48 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=66.9
Q ss_pred CCcCCCHHHHHHHhcccCCe-eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTI-KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i-~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
||+++||+||+++|+.||.| .+|+|++|++|+++|||||+|.+.++|++||+. ||.. +.| |.|+|.++..+...
T Consensus 23 Lp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~-~~g--r~i~v~~a~~~~~~ 97 (114)
T 2cpy_A 23 IPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKK-LNG--REAFVHVVTLEDMR 97 (114)
T ss_dssp CCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEE-ETT--EEEEEEEECHHHHH
T ss_pred cCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCc-cCC--eEEEEEECCHHHHH
Confidence 89999999999999999999 899999999999999999999999999999987 8865 555 66999999776443
No 256
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-16 Score=122.55 Aligned_cols=72 Identities=28% Similarity=0.521 Sum_probs=66.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||++|+++|+.||.|++|++++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+++.+
T Consensus 50 Lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 122 (139)
T 1u6f_A 50 IPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN-ILN--KRLKVALAASG 122 (139)
T ss_dssp CSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE-CSS--CEEEEEESSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEEECCCC
Confidence 89999999999999999999999999996 78999999999999999999999999976 455 56999999876
No 257
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=116.08 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=64.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~-v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|+.||.|.+ |.|+++.+|+++|||||+|.+.++|++|++. ||.. +.| |.|+|.++..+
T Consensus 23 Lp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~-~~g--r~i~v~~~~~~ 94 (104)
T 1wg5_A 23 LPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKER-IGH--RYIEIFKSSRA 94 (104)
T ss_dssp CCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCC-SSS--SCCEEEEECTT
T ss_pred CCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccch-hCC--cEEEEEECCHH
Confidence 8999999999999999999997 8899988999999999999999999999987 8865 555 56999988654
No 258
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=118.51 Aligned_cols=73 Identities=25% Similarity=0.530 Sum_probs=66.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 78 (327)
||+++|+++|+++|+.||.|.+|.|++++ +|+++|||||+|.+.++|++|+ .|||..+ .| +.|+|.++..+..
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g--~~l~V~~a~~~~~ 106 (114)
T 2cq4_A 33 LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL-LG--VPIIVQASQAEKN 106 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE-TT--EEEEEEEHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe-CC--eEEEEEecCCCcc
Confidence 89999999999999999999999999997 6999999999999999999999 9999764 55 6699999976543
No 259
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.9e-16 Score=113.54 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=64.2
Q ss_pred CCcCCCHHHHH----HHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~----~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+ ++|++||.|.+|++++++.+ +|||||+|.+.++|++|++.|||..+ .| |.|+|.+++..
T Consensus 17 L~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~-~g--r~l~V~~a~~~ 90 (96)
T 2dgx_A 17 IDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKI-GS--KKILVSLATGA 90 (96)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEE-TT--EEEEEEECCCS
T ss_pred CCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEEEEEcCCC
Confidence 89999999999 99999999999999999765 89999999999999999999999764 45 67999999765
No 260
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=6.2e-16 Score=114.57 Aligned_cols=70 Identities=21% Similarity=0.415 Sum_probs=64.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.|| |.+|++++++ +|+++|||||+|.+.++|++|+ .|||..+ .| +.|+|.++..+
T Consensus 23 Lp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g--~~l~V~~a~~~ 93 (103)
T 2dng_A 23 LPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL-GD--RSLRVDIAEGR 93 (103)
T ss_dssp CCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE-TT--EECEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE-CC--eEEEEEEecCC
Confidence 899999999999999997 9999999997 7999999999999999999999 8999764 45 66999999875
No 261
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4e-16 Score=117.63 Aligned_cols=72 Identities=29% Similarity=0.394 Sum_probs=66.5
Q ss_pred CCcCCCHHHHHHHhcccCCee--------EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEe
Q 020372 2 LPKNVSEAEVSALFSIYGTIK--------DLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 72 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~--------~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 72 (327)
||+++|+++|+++|++||.|. .|+|++++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.+
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V~~ 99 (113)
T 2cpe_A 23 LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF-QG--SKLKVSL 99 (113)
T ss_dssp CCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE-TT--EECEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc-CC--CEEEEEE
Confidence 899999999999999999999 69999995 899999999999999999999999999874 45 6699999
Q ss_pred CCCh
Q 020372 73 ADTE 76 (327)
Q Consensus 73 a~~~ 76 (327)
+..+
T Consensus 100 a~~~ 103 (113)
T 2cpe_A 100 ARKK 103 (113)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9876
No 262
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=8.8e-16 Score=113.81 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCCceEEEeCCC--CCCC--------HHHHHHHhhccCCeeEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhcCc
Q 020372 239 PPGANLFIYHIP--QEFG--------DQELGNAFQAFGRVLSAKVFVDKAT--GVSKCFGFVSYESPASAQNAIAMMNGC 306 (327)
Q Consensus 239 ~~~~~l~v~nLp--~~~t--------~~~L~~~F~~~G~i~~v~i~~~~~~--~~~~G~afV~f~~~~~A~~A~~~l~g~ 306 (327)
.++++|++.|+- ..+. +++|++.|++||.|.+|+|++++.+ ++++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 467899999983 3332 3799999999999999999988643 468999999999999999999999999
Q ss_pred eeCCcEEEEEEcc
Q 020372 307 QLGGKKLKVQLKR 319 (327)
Q Consensus 307 ~i~g~~l~v~~~~ 319 (327)
.++||.|+|.+..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999864
No 263
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=112.58 Aligned_cols=72 Identities=26% Similarity=0.501 Sum_probs=64.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCC-cccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQT-SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~-skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.++++. ++. ++|||||+|.+.++|++|++.|||.. ++| +.|+|.++.++
T Consensus 12 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 85 (88)
T 4a8x_A 12 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ-IDG--QEITATAVLAP 85 (88)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEEECCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe-ECC--eEEEEEECCCC
Confidence 89999999999999999999999999986 444 99999999999999999999999987 455 66999998764
No 264
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.1e-16 Score=116.74 Aligned_cols=71 Identities=27% Similarity=0.489 Sum_probs=64.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|++++++. +++|||||+|.+.++|++|++.|||.. +.| +.|+|.+++.+
T Consensus 37 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~~a~~~ 107 (109)
T 2err_A 37 IPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTV-VEG--RKIEVNNATAR 107 (109)
T ss_dssp CCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCE-ETT--EECEEEECCCS
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEEECCCC
Confidence 799999999999999999999999999864 489999999999999999999999987 455 66999999765
No 265
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-16 Score=113.61 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=62.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++.
T Consensus 13 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~~~~~~~~ 83 (85)
T 1x4e_A 13 LQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG-VQA--QMAKQSGPS 83 (85)
T ss_dssp CCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT-CCE--ESCCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe-Eee--EEEeecCCC
Confidence 89999999999999999999999999996 89999999999999999999999999976 445 457776653
No 266
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=6.2e-16 Score=118.94 Aligned_cols=72 Identities=29% Similarity=0.551 Sum_probs=66.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.|++++ +|+++|||||+|.+.++|++|++.|||..| .| +.|+|.++..+
T Consensus 30 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~v~~a~~~ 102 (126)
T 3ex7_B 30 VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL-MG--QPISVDWCFVR 102 (126)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS-SS--SBCEEEESEES
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CC--eEEEEEEecCC
Confidence 89999999999999999999999999996 899999999999999999999999999874 55 56999999765
No 267
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6e-16 Score=114.83 Aligned_cols=70 Identities=24% Similarity=0.437 Sum_probs=64.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-C-CCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-Q-QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~-g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|+.|| |.+|.|++++ + |+++|||||+|.+.++|++|+ .|||.. +.| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~V~~a~~~ 94 (104)
T 1wi8_A 23 LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN--KRIRVDVADQA 94 (104)
T ss_dssp CCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE-ETT--EECEEEECCCC
T ss_pred CCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE-eCC--cEEEEEEccCC
Confidence 899999999999999999 9999999997 4 899999999999999999999 999987 455 66999999876
No 268
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=117.51 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=65.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++|++.|++ . +.| +.|+|.++...
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~-~~g--~~l~V~~a~~~ 96 (116)
T 2cqd_A 25 LPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-I-IDG--RKANVNLAYLG 96 (116)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E-ETT--EECEEEESTTT
T ss_pred CCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-c-CCC--EEEEEEEcccC
Confidence 89999999999999999999999999996 799999999999999999999999998 4 556 66999999764
No 269
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.2e-16 Score=109.60 Aligned_cols=68 Identities=16% Similarity=0.341 Sum_probs=62.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
||+++|+++|+++|++||.|.+|.+.+++ +|+++|||||+|.+.++|++|++.++ .. +.| +.|+|.+|
T Consensus 8 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~-~~g--~~l~v~~a 76 (77)
T 1uaw_A 8 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HE-LDS--KTIDPKVA 76 (77)
T ss_dssp CCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CC-CSS--CCCEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Cc-cCC--EEEEEEec
Confidence 89999999999999999999999999996 79999999999999999999999999 44 666 55999887
No 270
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.5e-16 Score=114.83 Aligned_cols=73 Identities=19% Similarity=0.397 Sum_probs=63.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 78 (327)
||+++|+++|+++|++||.|.+|.+.+++ +|+++|||||+|.+.+ |.+|++.|||.. +.| +.|+|.+|.....
T Consensus 9 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~-~~g--~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 9 LVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD-FMG--RTIRVTEANPKKS 82 (90)
T ss_dssp ECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC-CSS--SSCSEEEC-----
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE-ECC--eEEEEEEcCCCCC
Confidence 79999999999999999999999999996 7999999999999999 999999999987 455 5699999987643
No 271
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=8.3e-16 Score=110.15 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=61.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
||+++|+++|+++|++||.|.+|++++++ +|+++|||||+|.+.++|++|++. ++.. +.| +.|+|.+|
T Consensus 19 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~-~~g--~~i~v~~A 87 (87)
T 3s7r_A 19 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR-LDG--RVIDPKKA 87 (87)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE-ETT--EEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE-ECC--EEEEEEeC
Confidence 89999999999999999999999999996 799999999999999999999965 6655 566 56999875
No 272
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.8e-15 Score=132.64 Aligned_cols=82 Identities=23% Similarity=0.408 Sum_probs=75.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 313 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l 313 (327)
..+.++|||+|||+.+++++|+ ++|++||.|.+|++.. +++++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999976 9999999999998875 78899999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 020372 314 KVQLKRDNK 322 (327)
Q Consensus 314 ~v~~~~~~~ 322 (327)
+|.+++.+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999987655
No 273
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=7e-16 Score=124.37 Aligned_cols=80 Identities=28% Similarity=0.458 Sum_probs=74.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
++++|||+|||+.+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|+.. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999988999999999999999999999994 678999999998876
Q ss_pred CC
Q 020372 320 DN 321 (327)
Q Consensus 320 ~~ 321 (327)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 274
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=9.4e-16 Score=117.52 Aligned_cols=76 Identities=29% Similarity=0.443 Sum_probs=65.7
Q ss_pred CCcCCCHHHHH----HHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~----~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
||+++++++|+ ++|++||.|.+|.+.+ +|++||||||+|.+.++|.+|++.|||..+ .| ++|+|.|+..+.
T Consensus 37 L~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l-~g--r~l~V~~a~~~~ 111 (127)
T 2a3j_A 37 INPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPF-QG--NPLVITFSETPQ 111 (127)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCC-TT--SCCEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEe-CC--CEEEEEEccCcc
Confidence 89999999976 6999999999988754 688999999999999999999999999874 45 679999999876
Q ss_pred HHHHH
Q 020372 78 ERQAR 82 (327)
Q Consensus 78 ~~~~~ 82 (327)
....+
T Consensus 112 ~~~~~ 116 (127)
T 2a3j_A 112 SQVAE 116 (127)
T ss_dssp HHHHC
T ss_pred hhccc
Confidence 55443
No 275
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-16 Score=115.24 Aligned_cols=70 Identities=24% Similarity=0.432 Sum_probs=64.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~--~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.|| |.+|++++++ +|+++|||||+|.+.++|.+|+ .|||.. +.| +.|+|.+++.+
T Consensus 27 Lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~-~~g--~~l~V~~a~~~ 98 (100)
T 2j76_E 27 LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN--RRIRVDVADQA 98 (100)
T ss_dssp CSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC-BTT--BCCCCEECCCS
T ss_pred CCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE-ECC--eEEEEEeccCC
Confidence 799999999999999999 9999999996 7999999999999999999999 899987 555 56999999765
No 276
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=115.63 Aligned_cols=71 Identities=20% Similarity=0.358 Sum_probs=65.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|++. +|.. +.| +.|+|.++..+
T Consensus 24 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~-~~g--~~l~V~~a~~~ 95 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT-LDG--RNIDPKPCTPR 95 (105)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE-ETT--EEEBCCCSCCS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe-ECC--EEEEEEEccCC
Confidence 89999999999999999999999999995 899999999999999999999999 8865 555 56999999876
No 277
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-16 Score=116.87 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCcCCCHHHHHHHhcccCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~---i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
||+++|++||+++|+.||. |.+|+|+++++|+++|||||+|.+.++|++|++ +||.. ++| |.|+|.++..+.
T Consensus 19 Lp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~g--r~i~V~~a~~~~ 93 (107)
T 2lmi_A 19 LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMY-MGQ--RYVEVYEINNED 93 (107)
T ss_dssp CCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCC-SSS--SCCCCEECCHHH
T ss_pred CCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcce-eCC--eEEEEEECCHHH
Confidence 8999999999999999998 899999999889999999999999999999999 99965 555 569999997653
No 278
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2e-15 Score=114.74 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=61.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC-AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~-afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
|++.+|+++|+++|++||.|++|+|.+. .|| |||+|++.++|++|++.|||..|.+++ ++|+|.+|+.+
T Consensus 33 L~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~-~~l~V~~Ak~~ 102 (124)
T 2e5i_A 33 PLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGC-CTLKIEYARPT 102 (124)
T ss_dssp CCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB-SEEEEECCSCS
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCC-eEEEEEEecCC
Confidence 7999999999999999999999999763 386 999999999999999999999866543 67999999876
No 279
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.7e-16 Score=115.99 Aligned_cols=72 Identities=24% Similarity=0.425 Sum_probs=65.0
Q ss_pred CCcCCCHHHHH---HHhcccCCeeEEEEeeCC-CC---CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVS---ALFSIYGTIKDLQILRGS-QQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~---~~F~~~G~i~~v~~~~~~-~g---~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
||+++||+||+ ++|++||+|.+|.+.++. ++ +++|||||+|.+.++|++|++.|||.. ++| ++|+|.++.
T Consensus 23 Lp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~-~~g--r~l~V~~a~ 99 (111)
T 2cpi_A 23 LSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV-VDG--RTLKASLGT 99 (111)
T ss_dssp ECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE-ETT--EEEEEESCC
T ss_pred CCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE-ECC--EEEEEEecc
Confidence 79999999999 999999999999999886 33 566999999999999999999999977 455 679999998
Q ss_pred Ch
Q 020372 75 TE 76 (327)
Q Consensus 75 ~~ 76 (327)
++
T Consensus 100 ~k 101 (111)
T 2cpi_A 100 TK 101 (111)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 280
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-16 Score=118.80 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=63.6
Q ss_pred CCcCCCHHHHHHHhcccCCe----eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTI----KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i----~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|+.||.| .+|+|++|.+|+++|||||+|.+.++|++|++. |+.. +.| |.|+|..+..+
T Consensus 31 Lp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~-l~g--R~i~V~~a~~~ 105 (123)
T 2dha_A 31 LPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDL-LGK--RYIELFRSTAA 105 (123)
T ss_dssp CCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEE-SSS--CEECCEEECHH
T ss_pred CCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCe-eCC--eEEEEEECCHH
Confidence 89999999999999999975 699999999999999999999999999999986 8855 666 56999988654
No 281
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-16 Score=114.47 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=60.7
Q ss_pred CCc-CCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCCCCcccEEEEeCCCh
Q 020372 2 LPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~-~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~-~~~g~~~~l~v~~a~~~ 76 (327)
||+ ++||+||+++|++||.|.+|+|+++ +|||||+|++.++|++|++.||+.. .+.| |+|+|.+|...
T Consensus 23 Lp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G--r~l~V~~a~~~ 92 (102)
T 1x4d_A 23 FQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFG--KPVRVHLSQKY 92 (102)
T ss_dssp CCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETT--EECEEEEECCC
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECC--cEEEEEECCCC
Confidence 899 9999999999999999999999886 6899999999999999999999743 2455 67999999864
No 282
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.61 E-value=2.4e-15 Score=113.61 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=71.0
Q ss_pred CCceEEEeCCCCC--C---CHHHHHHHhhccCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhcCceeCC
Q 020372 240 PGANLFIYHIPQE--F---GDQELGNAFQAFGRVLSAKVFVDKA----TGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 310 (327)
Q Consensus 240 ~~~~l~v~nLp~~--~---t~~~L~~~F~~~G~i~~v~i~~~~~----~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g 310 (327)
++++|+++|+-.. + .++||++.|++||.|.+|+|..++. +++++|++||+|.+.++|.+|+..|||++|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6789999999432 2 3689999999999999999999864 45788999999999999999999999999999
Q ss_pred cEEEEEEcc
Q 020372 311 KKLKVQLKR 319 (327)
Q Consensus 311 ~~l~v~~~~ 319 (327)
|.|+|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999864
No 283
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=114.65 Aligned_cols=68 Identities=28% Similarity=0.513 Sum_probs=60.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-ccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~-~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++||.|++|+|+++ ||||||+|++.++|++|++.|++. ..+.| ++|+|.+++.+
T Consensus 39 Lp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G--r~l~V~~a~~k 107 (119)
T 2ad9_A 39 LPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QPIYIQFSNHK 107 (119)
T ss_dssp CCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTT--BCCEEEECSSS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--eEEEEEEccCC
Confidence 8999999999999999999999999986 899999999999999999999852 23556 67999999875
No 284
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=1.5e-15 Score=121.33 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=66.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||++|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++||+.|||..| .| +.|+|.++...
T Consensus 47 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V~~a~~~ 119 (156)
T 1h2v_Z 47 LSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL-DD--RIIRTDWDAGF 119 (156)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE-TT--EECEEEEESCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEEEEECCCC
Confidence 89999999999999999999999999997 799999999999999999999999999875 55 66999999865
No 285
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-16 Score=122.09 Aligned_cols=71 Identities=17% Similarity=0.381 Sum_probs=65.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeE--EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCC----ccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKD--LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGK----HKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~--v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~----~~~~g~~~~l~v~~a~ 74 (327)
||+++||++|+++|++||.|.. |+|++|+ +|++||||||+|.+. +|.+|++.|||. . ++| |.|+|.+++
T Consensus 31 L~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~-~~g--r~l~V~~a~ 106 (131)
T 2m2b_A 31 LNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT-IDG--KTINVEFAK 106 (131)
T ss_dssp CCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC-GGG--CCCCCEECC
T ss_pred CCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc-CCC--EEEEEEECC
Confidence 8999999999999999999976 9999997 999999999999999 999999999997 5 445 669999997
Q ss_pred Ch
Q 020372 75 TE 76 (327)
Q Consensus 75 ~~ 76 (327)
..
T Consensus 107 ~~ 108 (131)
T 2m2b_A 107 GS 108 (131)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 286
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=1.1e-15 Score=117.28 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=65.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|+ .|||.. +.| +.|+|.+++..
T Consensus 44 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~V~~a~~~ 115 (124)
T 2jwn_A 44 VDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV-FRG--RTIKVLPKRTN 115 (124)
T ss_dssp ECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE-ETT--EECEEEESSCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe-ECC--eEEEEEECCCC
Confidence 78999999999999999999999999995 8999999999999999999999 799987 455 66999999764
No 287
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=113.49 Aligned_cols=70 Identities=23% Similarity=0.467 Sum_probs=63.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|++|.+..+ ++++|||||+|.+.++|++|++.|||..+ .| +.|+|.+++.+
T Consensus 30 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~V~~a~~~ 99 (109)
T 1x4a_A 30 LPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDY-DG--YRLRVEFPRSG 99 (109)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEE-TT--EECEEECCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEE-CC--eEEEEEEcccC
Confidence 8999999999999999999999999664 56899999999999999999999999874 55 66999999875
No 288
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=1.2e-15 Score=114.14 Aligned_cols=71 Identities=17% Similarity=0.337 Sum_probs=64.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|++++++ +|+++|||||+|.+.++|++|++.++ ..++| +.|+|.++..+
T Consensus 33 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~--~~l~g--~~l~V~~a~~~ 104 (109)
T 2rs2_A 33 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDS--KTIDPKVAFPR 104 (109)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC--EEETT--EEEEEEECCCC
T ss_pred CCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC--CcCCC--EEEEEEEccCC
Confidence 89999999999999999999999999996 79999999999999999999998864 44666 56999999765
No 289
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.61 E-value=8.5e-16 Score=122.96 Aligned_cols=72 Identities=29% Similarity=0.502 Sum_probs=67.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|+.||.|.+|.+++|+ +|+++|||||+|.+.++|++|++.|||.. +.| ++|+|.++..+
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 150 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDG--RELRVQMARYG 150 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE-SSS--SEEEEEEECCS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEEECCCC
Confidence 89999999999999999999999999996 89999999999999999999999999976 555 66999999865
No 290
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=1.4e-15 Score=129.02 Aligned_cols=74 Identities=14% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCcCCCHHHHHHHhcccC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G--~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 78 (327)
||+++||++|+++|++|| .|++|+|++|+ +|++||||||+|.+.++|++||+.|||.. +.| +.|+|.++.....
T Consensus 76 L~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~-~~G--r~l~V~~a~~~~~ 152 (229)
T 3q2s_C 76 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPVVTPVNKQFL 152 (229)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC-BTT--BCCEEEECCHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe-ECC--EEeEEEECCCCcc
Confidence 899999999999999999 99999999996 99999999999999999999999999987 455 5699999986643
No 291
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=111.54 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=60.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~-~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++||.|.+|.++++ ||||||+|++.++|++|++.|++.. .+.| ++|+|.|+..+
T Consensus 23 Lp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G--r~l~V~~a~~~ 91 (104)
T 1wex_A 23 LCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAG--QQAFFNYSTSK 91 (104)
T ss_dssp CCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSS--SBCEEEECSSS
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--EEEEEEEccCc
Confidence 8999999999999999999999999875 7899999999999999999998643 3555 66999999865
No 292
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=115.63 Aligned_cols=71 Identities=20% Similarity=0.380 Sum_probs=65.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.|++++ +|+++|||||+|.+.++|++||+. +|.. +.| +.|+|.++..+
T Consensus 35 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l~V~~a~~~ 106 (116)
T 1x4b_A 35 LSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS-IDG--RVVEPKRAVAR 106 (116)
T ss_dssp CTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE-ETT--EEEEEECCSSC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE-ECC--EEEEEEECCCC
Confidence 89999999999999999999999999996 799999999999999999999988 8865 555 66999999876
No 293
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=3e-15 Score=127.28 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=73.8
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 238 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
..++++|||+|||+ .+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44679999999999 99999999999999999999998864 7899999999999999999999999999999999
Q ss_pred EccCC
Q 020372 317 LKRDN 321 (327)
Q Consensus 317 ~~~~~ 321 (327)
+++.+
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98755
No 294
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=113.97 Aligned_cols=73 Identities=23% Similarity=0.451 Sum_probs=64.5
Q ss_pred CCcCCCHHHHHHHhcccCC-eeEEEEe-eCC-CCCcccEEEEEeCCHHHHHHHHHHhc-CCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGT-IKDLQIL-RGS-QQTSKGCAFLKYETKEQALAALEAIN-GKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~-i~~v~~~-~~~-~g~skG~afV~F~~~e~A~~Ai~~l~-g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||. |.+|.++ +++ +|+++|||||+|.+.++|.+|++.|| |...+.| +.|+|.++.++
T Consensus 16 Lp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~~l~V~~a~~~ 92 (109)
T 2dis_A 16 IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQIAVDWAEPE 92 (109)
T ss_dssp CCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--BCCEEEESCSS
T ss_pred CCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--CeEEEEEcCCC
Confidence 8999999999999999998 9999998 665 78999999999999999999999995 4234566 56999999876
No 295
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=5.1e-16 Score=114.94 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=54.1
Q ss_pred HHHHHHh-cccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 9 AEVSALF-SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 9 ~dL~~~F-~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
+||++.| ++||.|++|.|+++.+|+++|||||+|.+.++|.+|++.|||.. ++| |.|+|.++
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~-~~G--r~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW-FNG--QPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE-ECC--EEEEEEEc
Confidence 3444445 99999999999999889999999999999999999999999976 556 66999886
No 296
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=110.01 Aligned_cols=67 Identities=30% Similarity=0.566 Sum_probs=59.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN--GKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~--g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++||.|.+|.++++ ||||||+|++.++|++|++.|+ +.. +.| |+|+|.|+..+
T Consensus 23 Lp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~-~~G--r~l~V~~a~~~ 91 (101)
T 2cq1_A 23 LPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPH-LRN--QPIYIQYSNHK 91 (101)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCE-ETT--EECEEEECSCS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCce-ECC--cEEEEEEcCcc
Confidence 8999999999999999999999999876 8999999999999999999875 433 555 67999999865
No 297
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=7.2e-16 Score=119.90 Aligned_cols=72 Identities=29% Similarity=0.502 Sum_probs=66.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+++.+
T Consensus 55 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~-i~g--~~l~V~~a~~~ 127 (135)
T 2lea_A 55 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDG--RELRVQMARYG 127 (135)
T ss_dssp CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC-SSS--SCCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEEEECCCC
Confidence 89999999999999999999999999996 89999999999999999999999999987 555 56999999875
No 298
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=3.7e-16 Score=121.59 Aligned_cols=70 Identities=23% Similarity=0.299 Sum_probs=63.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++|| |++|+|++|++|+++|||||+|++.++|++|| .+|+.. +.| |.|+|.++...
T Consensus 54 Lp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~-l~g--R~i~V~~a~~~ 123 (139)
T 2hgn_A 54 LPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRAN-MQH--RYIELFLNSTT 123 (139)
T ss_dssp CCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCS-SSS--CCCCCEECCCS
T ss_pred CCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCE-ECC--EEEEEEECCCC
Confidence 899999999999999999 77999999988999999999999999999999 789865 555 56999998765
No 299
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=5.3e-16 Score=107.90 Aligned_cols=68 Identities=15% Similarity=0.329 Sum_probs=61.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
||+++|+++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|++|++. ++.. +.| +.|+|.+|
T Consensus 7 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l~v~~a 75 (75)
T 1iqt_A 7 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN-VGL--SKCEIKVA 75 (75)
T ss_dssp CCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC-BTT--BCCCEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe-ECC--EEEEEEEC
Confidence 89999999999999999999999999996 799999999999999999999985 7765 556 55888775
No 300
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=113.81 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=63.8
Q ss_pred CCcCC------CHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNV------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~------te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||+.+ |+++|+++|++||.|.+|.+. ..+|+++|||||+|.+.++|.+|++.|||.. +.|+ ++|+|.++..
T Consensus 23 Lp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~-~~g~-~~l~V~~a~~ 99 (105)
T 2nlw_A 23 VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-LDKQ-HTFRVNLFTD 99 (105)
T ss_dssp CCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE-CSTT-CEEEEECSCC
T ss_pred CCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc-cCCC-ceEEEEEcch
Confidence 78888 789999999999999999998 4689999999999999999999999999976 5553 1699999975
Q ss_pred h
Q 020372 76 E 76 (327)
Q Consensus 76 ~ 76 (327)
.
T Consensus 100 ~ 100 (105)
T 2nlw_A 100 F 100 (105)
T ss_dssp C
T ss_pred H
Confidence 4
No 301
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=118.85 Aligned_cols=69 Identities=30% Similarity=0.490 Sum_probs=63.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
||+++|+++|+++|++||.|++|++++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+|
T Consensus 71 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~A 140 (140)
T 2ku7_A 71 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--RTIRVNLA 140 (140)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE-ETT--EEEEEEC-
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEEeC
Confidence 89999999999999999999999999995 89999999999999999999999999976 455 66999875
No 302
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=116.28 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEee-CCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILR-GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~-~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
||+++||+||+++|+.||.|.++.++. +.+|+++|||||+|.+.++|++||+ |||.. ++| |.|+|.++..+.
T Consensus 33 Lp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~i~V~~a~~~~ 105 (124)
T 1wel_A 33 LPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY-MGN--RFIQVHPITKKG 105 (124)
T ss_dssp CCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC-STT--SCBEEEEECHHH
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe-ECC--cEEEEEECCHHH
Confidence 899999999999999999999855544 4699999999999999999999999 99976 556 569999997754
No 303
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4e-15 Score=110.14 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=63.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+++++ +|+++|||||+|.+.++|++|++. +. .+.| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g--~~l~v~~a~~~ 93 (103)
T 2cqg_A 23 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RH-MIDG--RWCDCKLPNSK 93 (103)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CE-EETT--EEEEEECCCTT
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CC-eeCC--eEEEEEecCCC
Confidence 89999999999999999999999999996 799999999999999999999984 43 3556 56999999876
No 304
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=113.82 Aligned_cols=70 Identities=23% Similarity=0.377 Sum_probs=61.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc--CCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK--MEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~--~~g~~~~l~v~~a~~~ 76 (327)
|++++||++|+++|++||.|.+|.+..+ ||||||+|++.++|++|++.|||..+ ..+..++|+|.|+...
T Consensus 35 L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 35 LGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp GGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 7899999999999999999999988653 79999999999999999999999865 1233588999999753
No 305
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=7.3e-16 Score=108.90 Aligned_cols=66 Identities=21% Similarity=0.387 Sum_probs=57.8
Q ss_pred CCcCC------CHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEE
Q 020372 2 LPKNV------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 70 (327)
Q Consensus 2 Lp~~~------te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 70 (327)
||+++ |+++|+++|++||.|.+|.+. ..+|+++|||||+|.+.++|++|++.|||.. +.|+ ++|+|
T Consensus 9 Lp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~g~-~~l~V 80 (81)
T 2krb_A 9 VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-LDKQ-HTFRV 80 (81)
T ss_dssp CCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCC-CSSS-SCCCC
T ss_pred CCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcc-cCCc-eeEEe
Confidence 78888 789999999999999999988 4589999999999999999999999999987 4553 14665
No 306
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=111.54 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=62.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|++||.| +++++.+|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.+++.+
T Consensus 23 Lp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~v~~a~~~ 91 (101)
T 2fc9_A 23 LSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI-EG--RAIRLELQGPR 91 (101)
T ss_dssp CCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE-TT--EEEEEEECSSC
T ss_pred CCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe-CC--eEEEEEEcCCC
Confidence 89999999999999999987 677778899999999999999999999999999764 45 66999999876
No 307
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=3e-15 Score=120.62 Aligned_cols=75 Identities=35% Similarity=0.542 Sum_probs=67.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 79 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~~ 79 (327)
||+++|+++|+++|+.||.|..|.|++++ +|+++|||||+|.+.++|.+||+.|||..| .| +.|+|.++..+...
T Consensus 80 Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 80 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MG--QTIQVDWCFVKGPK 155 (165)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEESEECC--
T ss_pred CCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE-CC--EEEEEEEecCCCCC
Confidence 89999999999999999999999999995 899999999999999999999999999875 45 67999999876543
No 308
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=1e-15 Score=124.49 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=74.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEE
Q 020372 237 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 316 (327)
Q Consensus 237 ~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 316 (327)
...+.++|||+|||+.+++++|+++|++||.+.. .++.+..+++++|||||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3456799999999999999999999999998766 334444578899999999999999999995 99999999999999
Q ss_pred EccCCCC
Q 020372 317 LKRDNKQ 323 (327)
Q Consensus 317 ~~~~~~~ 323 (327)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9887654
No 309
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=5.1e-15 Score=111.89 Aligned_cols=71 Identities=24% Similarity=0.483 Sum_probs=64.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
||+++|+++|+++|+.||.|.+|.++++ ++++|||||+|.+.++|.+|++.|||.. +.| +.|+|.++..+.
T Consensus 16 lp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~~a~~~~ 86 (115)
T 3lqv_A 16 LPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFN-VSN--RYLVVLYYNANR 86 (115)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCB-SSS--CBCEEEECCHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEEecCCh
Confidence 8999999999999999999999999876 5679999999999999999999999987 455 569999998654
No 310
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.5e-15 Score=108.61 Aligned_cols=68 Identities=26% Similarity=0.405 Sum_probs=61.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC-CCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~-g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|++|.+.++ +|||||+|.+.++|++|++.|||..+.. | +.|+|.+++.+
T Consensus 25 lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g--~~l~V~~a~~~ 93 (97)
T 1why_A 25 LGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPD--RRLRVDFAKSG 93 (97)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSS--CBCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCC--cEEEEEECCCC
Confidence 8999999999999999999999999875 7899999999999999999999987542 4 66999999875
No 311
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=1.7e-15 Score=113.14 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=61.2
Q ss_pred CCcCCCHHHHHHHhcccC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++|| .|..|.+..+ +++|||||+|.+.++|++||+.|||.. ++| |.|+|.++..+
T Consensus 36 Lp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~-l~G--r~i~V~~a~~~ 105 (111)
T 2jvr_A 36 LPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIE-FRG--SVITVERDDNP 105 (111)
T ss_dssp SSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEE-ETT--EEEEEEESCC-
T ss_pred CCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEECCCC
Confidence 899999999999999999 8999998643 479999999999999999999999977 455 67999999765
No 312
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=1.1e-15 Score=116.67 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=61.9
Q ss_pred CCcCCCHHHHHHHhcccCCee--EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIK--DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~--~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|+.| .|+ +|+|++|++|+++|||||+|.+.++|++||+. ++.. ++| |.|+|.++..+
T Consensus 50 Lp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~-l~g--R~I~V~~a~~~ 121 (126)
T 2hgm_A 50 LPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKER-IGH--RYIEVFKSSQE 121 (126)
T ss_dssp CCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCC-BTT--BCCCCEEECHH
T ss_pred CCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCE-ECC--EEEEEEECCHH
Confidence 89999999999999999 676 99999998899999999999999999999985 6654 666 56999988654
No 313
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=3.5e-15 Score=126.06 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred CCCCceEEEeCCCCCC---------CHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 020372 238 GPPGANLFIYHIPQEF---------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 308 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~---------t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i 308 (327)
....++|||+||+..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 7999999999999999999985 478999999999999999999999999
Q ss_pred ------------CCcEEEEEEccCCC
Q 020372 309 ------------GGKKLKVQLKRDNK 322 (327)
Q Consensus 309 ------------~g~~l~v~~~~~~~ 322 (327)
.|+.|.|+|+++..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998653
No 314
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=6.5e-15 Score=109.06 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=60.3
Q ss_pred CHHHHHHHhcccCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 7 SEAEVSALFSIYGTIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~~~~~~--~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
+++||+++|++||.|.+|.|++++ +++++|||||+|.+.++|.+|++.|||.. ++| |.|+|.++..
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~-~~G--r~i~v~~a~~ 93 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY-FGG--RVVKACFYNL 93 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEECCH
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE-ECC--cEEEEEEcCH
Confidence 799999999999999999999985 36899999999999999999999999976 556 6799999965
No 315
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=1.1e-15 Score=113.23 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=62.0
Q ss_pred EeCCCCCCCHHHHHHHh------------hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 020372 246 IYHIPQEFGDQELGNAF------------QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 313 (327)
Q Consensus 246 v~nLp~~~t~~~L~~~F------------~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l 313 (327)
+.||+..+++++|++.| ++||.|.+|+|++++ +++++|||||+|.+.++|.+|+..|||+.++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34555566666665555 999999999999886 68999999999999999999999999999999999
Q ss_pred EEEEc
Q 020372 314 KVQLK 318 (327)
Q Consensus 314 ~v~~~ 318 (327)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99985
No 316
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5e-15 Score=108.80 Aligned_cols=67 Identities=30% Similarity=0.510 Sum_probs=61.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~~a~~~ 89 (99)
T 2cpj_A 23 LPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMP-LRG--KQLRVRFACHS 89 (99)
T ss_dssp CCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCC-BTT--BCCEEEESSCC
T ss_pred CCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCE-eCC--ceEEEEEcCCC
Confidence 7999999999999999999999999865 7899999999999999999999987 455 66999999875
No 317
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=110.16 Aligned_cols=68 Identities=26% Similarity=0.466 Sum_probs=62.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.++++ ++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 8 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a~~~ 75 (101)
T 2hvz_A 8 LGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKV-ICG--SRVRVELSTGM 75 (101)
T ss_dssp CCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSC-SSS--CCCEEEESSSC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCe-ECC--cEEEEEEccCC
Confidence 8999999999999999999999999988 78999999999999999999999986 555 55999999876
No 318
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=3.8e-15 Score=123.60 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=72.2
Q ss_pred CCceEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEc
Q 020372 240 PGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 318 (327)
Q Consensus 240 ~~~~l~v~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 318 (327)
.+++|||+|||+ .+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998764 789999999999999999999999999999999998
Q ss_pred cCC
Q 020372 319 RDN 321 (327)
Q Consensus 319 ~~~ 321 (327)
+.+
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 765
No 319
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=1.9e-15 Score=110.64 Aligned_cols=74 Identities=26% Similarity=0.453 Sum_probs=65.9
Q ss_pred CCcCCCHHHHH----HHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~----~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
||+++|+++|+ ++|++||.|.+|.+.+ +|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+.
T Consensus 16 Lp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~v~~a~~~~ 90 (97)
T 1nu4_A 16 LNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPF-YD--KPMRIQYAKTDS 90 (97)
T ss_dssp CCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEECSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE-CC--cEEEEEEccCCC
Confidence 89999999999 9999999999999874 578899999999999999999999999875 45 679999998875
Q ss_pred HHH
Q 020372 78 ERQ 80 (327)
Q Consensus 78 ~~~ 80 (327)
+..
T Consensus 91 ~~~ 93 (97)
T 1nu4_A 91 DII 93 (97)
T ss_dssp THH
T ss_pred ccc
Confidence 543
No 320
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=5e-15 Score=120.51 Aligned_cols=72 Identities=26% Similarity=0.469 Sum_probs=67.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|+.||.|++|.|+++.+|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.++...
T Consensus 96 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~-l~G--r~l~V~~a~~~ 167 (177)
T 2f3j_A 96 LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPMDIQLVASQ 167 (177)
T ss_dssp CCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCB-CSS--SBCEEEEESSG
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCE-ECC--EEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999986 555 56999999765
No 321
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-15 Score=112.10 Aligned_cols=68 Identities=31% Similarity=0.434 Sum_probs=59.6
Q ss_pred CCcC-CCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCCCCcccEEEEeCCCh
Q 020372 2 LPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~-~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~-~~~g~~~~l~v~~a~~~ 76 (327)
||++ +||+||+++|++||.|.+|+|+++ ||||||+|++.++|++|++.|++.. .+.| |+|+|.++..+
T Consensus 33 Lp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G--r~l~V~~a~~~ 102 (112)
T 1x4f_A 33 LPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQG--RCVKVDLSEKY 102 (112)
T ss_dssp CCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSS--SCCEEEEECSC
T ss_pred CCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECC--EEEEEEECccc
Confidence 8998 999999999999999999999754 8999999999999999999987532 3555 66999999765
No 322
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=104.78 Aligned_cols=65 Identities=28% Similarity=0.530 Sum_probs=59.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v~~a~~~ 80 (90)
T 2dnq_A 16 LPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYK-LHG--VNINVEASKNK 80 (90)
T ss_dssp CCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCB-CSS--CBCEEECSSCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCc-cCC--cEEEEEECCCC
Confidence 89999999999999999999999997 5799999999999999999999976 455 56999999876
No 323
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.1e-15 Score=110.66 Aligned_cols=67 Identities=22% Similarity=0.356 Sum_probs=60.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+.+ ++|||||+|.+.++|++|++.|||..+ .| ++|+|.|+...
T Consensus 18 Lp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V~~a~~~ 84 (111)
T 1whx_A 18 LPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKF-HH--VPLYLEWAPIG 84 (111)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBS-SS--SBCEEEEEETT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE-CC--eEEEEEECCCC
Confidence 899999999999999999999999875 478999999999999999999999874 45 66999999653
No 324
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=5e-15 Score=109.20 Aligned_cols=66 Identities=33% Similarity=0.607 Sum_probs=60.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||+++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.|||..+ .| +.|+|.+++.
T Consensus 35 lp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V~~a~~ 100 (101)
T 2la4_A 35 IPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPF-QG--RNLRTGWGKE 100 (101)
T ss_dssp CCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEE-TT--EECCCCBCCC
T ss_pred CCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeE-CC--eEEEEEeccC
Confidence 899999999999999999999999984 589999999999999999999999874 45 5699999875
No 325
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.5e-15 Score=110.78 Aligned_cols=73 Identities=16% Similarity=0.310 Sum_probs=62.9
Q ss_pred CcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCC----HHH----HHHHHH--HhcCCccCCCCcccEEEE
Q 020372 3 PKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYET----KEQ----ALAALE--AINGKHKMEGSSVPLVVK 71 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~----~e~----A~~Ai~--~l~g~~~~~g~~~~l~v~ 71 (327)
|+.++|++|+++|+.||+|.+|.++.|+ +|+|+|||||+|.+ +++ |.+|++ .|+|.. ++| |.|+|.
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~-I~G--r~irV~ 91 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF-IMG--FKFEVI 91 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE-ETT--EEEEEE
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe-ecC--cEEEEE
Confidence 8999999999999999999999999997 99999999999996 444 899998 689976 555 679999
Q ss_pred eCCChHH
Q 020372 72 WADTEKE 78 (327)
Q Consensus 72 ~a~~~~~ 78 (327)
+-+....
T Consensus 92 ln~~g~~ 98 (136)
T 2j8a_A 92 LNKHSIL 98 (136)
T ss_dssp ECCTTHH
T ss_pred ECcccHH
Confidence 9876543
No 326
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.9e-15 Score=104.21 Aligned_cols=65 Identities=28% Similarity=0.571 Sum_probs=58.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh-cCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI-NGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l-~g~~~~~g~~~~l~v~~a~ 74 (327)
||+++|+++|+++|++||.|.+|.+.++ +|||||+|.+.++|++|++.| +|.. +.| +.|+|.|++
T Consensus 20 l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~-~~g--~~l~v~~ak 85 (85)
T 2ytc_A 20 LGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLI-VNG--RRLNVKWGR 85 (85)
T ss_dssp CTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCE-ETT--EECCEEECC
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCee-ECC--CEEEEEecC
Confidence 7999999999999999999999999974 899999999999999999988 8865 555 569999974
No 327
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=8e-16 Score=113.52 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=62.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~-~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+ .++++ .+|+++|||||+|.+.++|++|++ |||..+ .| +.|+|.++..+
T Consensus 25 Lp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~-~g--~~l~V~~a~~~ 95 (101)
T 1fj7_A 25 LNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV-FG--NEIKLEKPKGR 95 (101)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB-TT--BCCEEECCSCC
T ss_pred CCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE-CC--cEEEEEEcCCC
Confidence 8999999999999999999988 66666 478999999999999999999998 999874 45 66999999775
No 328
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=108.90 Aligned_cols=67 Identities=24% Similarity=0.559 Sum_probs=62.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.|||.. +.| +.|+|.+++.+
T Consensus 33 l~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 99 (109)
T 1x4g_A 33 IASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTT-IEG--HVVKCYWGKES 99 (109)
T ss_dssp CSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEECCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCE-ECC--cEEEEEecCCC
Confidence 8999999999999999999999999987 8899999999999999999999986 455 66999999876
No 329
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.2e-16 Score=118.10 Aligned_cols=74 Identities=27% Similarity=0.442 Sum_probs=67.0
Q ss_pred CCcCCCHHHHHHHhcccCCeeE--------EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEe
Q 020372 2 LPKNVSEAEVSALFSIYGTIKD--------LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 72 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~--------v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 72 (327)
||+++|+++|+++|++||.|.+ |.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~~ 91 (116)
T 2lcw_A 15 LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE-FSG--NPIKVSF 91 (116)
Confidence 7999999999999999999998 9999995 79999999999999999999999999976 445 5699999
Q ss_pred CCChHH
Q 020372 73 ADTEKE 78 (327)
Q Consensus 73 a~~~~~ 78 (327)
+..+..
T Consensus 92 a~~~~~ 97 (116)
T 2lcw_A 92 ATRRAD 97 (116)
Confidence 987643
No 330
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=4.5e-15 Score=109.68 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=64.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
||+++|+++|+++|+.||.|.+|.++++++|+++|||||+|.+.++|++|++ +|.. +.| +.|.|.++..+.
T Consensus 17 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~-~~g--~~l~v~~a~~~~ 87 (102)
T 2xs2_A 17 IDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQIN-FHG--KKLKLGPAIRKQ 87 (102)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCE-ETT--EECEEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCe-ECC--EEEEEEECCcCc
Confidence 8999999999999999999999999999999999999999999999999998 7755 555 559999987653
No 331
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=108.53 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=61.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC---CcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG---SSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g---~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++||.|.+|.|+++ |||||+|.+.++|++||+.|||..+ .| ..+.|+|.++..+
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKF-RSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEE-ECTTSCEEEEEEEESSCC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCc-cCCcCcceEEEEEeCCCC
Confidence 8999999999999999999999999987 7999999999999999999999764 44 2256999999875
No 332
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=106.63 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=60.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|. +.++.+ +++|||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 27 L~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a~~~ 94 (97)
T 2e5j_A 27 LPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLR-LGT--DTLRVALARQQ 94 (97)
T ss_dssp CCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCC-SSS--SCCEEEECCCC
T ss_pred CCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEEEcCCC
Confidence 899999999999999999997 666653 679999999999999999999999987 455 56999999875
No 333
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=106.31 Aligned_cols=69 Identities=25% Similarity=0.462 Sum_probs=61.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|++||+++|+.| .+|.+++++ +|+++|||||+|.+.++|++|++.|||.. +.| +.|+|.+++.+
T Consensus 23 Lp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~V~~a~~~ 92 (102)
T 2fc8_A 23 LSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE-IDG--NKVTLDWAKPK 92 (102)
T ss_dssp CCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT--EECEEEECCCC
T ss_pred CCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEEEecCC
Confidence 89999999999999977 367888885 89999999999999999999999999987 455 56999999876
No 334
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.3e-14 Score=108.23 Aligned_cols=67 Identities=33% Similarity=0.645 Sum_probs=60.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 78 (327)
||+++|+++|+++|++||.|.+|.++ +|||||+|.+.++|++|++.|||..+ .| +.|+|.+++.+..
T Consensus 39 Lp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 39 FPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSF-AN--QPLEVVYSKLPAK 105 (108)
T ss_dssp SCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEE-TT--EECEEESCSCCC-
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEE-CC--eEEEEEEecCCCC
Confidence 79999999999999999999999998 68999999999999999999999875 55 6699999987643
No 335
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=3.2e-14 Score=104.00 Aligned_cols=65 Identities=25% Similarity=0.468 Sum_probs=58.7
Q ss_pred CCc-CCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~-~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+ ++|+++|+++|+.||.|.+|.+. +|||||+|.+.++|.+|++.|||..+ .| +.|+|.+++.+
T Consensus 30 Lp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V~~a~~~ 95 (97)
T 2xnq_A 30 LPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMN-FG--KKLILEVSSSN 95 (97)
T ss_dssp CCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEE-TT--EECEEEECCCC
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEE-CC--EEEEEEecCCC
Confidence 787 99999999999999999999993 78999999999999999999999764 45 66999999764
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=1.6e-14 Score=103.74 Aligned_cols=68 Identities=16% Similarity=0.366 Sum_probs=55.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChHH
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 78 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~~ 78 (327)
||+++||++|+++|++||.|.+|+|+++ +||||||+|++.++|++ ++|.. +.++.+.|.|.++.++..
T Consensus 19 Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~-~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 19 CTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGED-LIIKGISVHISNAEPKHN 86 (89)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCE-EEETTEEEEEEECC----
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCC-cccCCEEEEEEEcCCCCc
Confidence 8999999999999999999999999986 79999999999999983 56664 333347799999987643
No 337
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=109.41 Aligned_cols=72 Identities=28% Similarity=0.404 Sum_probs=61.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~-~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|.+..+ .+|+++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 33 Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l~v~~a~~~ 105 (115)
T 2cpx_A 33 LSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL-YG--KILVIEFGKNK 105 (115)
T ss_dssp CCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC-SS--CBCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEEEEEEccCC
Confidence 8999999999999999999954433222 2789999999999999999999999999875 55 56999999875
No 338
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=104.51 Aligned_cols=64 Identities=22% Similarity=0.369 Sum_probs=56.6
Q ss_pred cCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 4 ~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
.++||++|+++|++||.|.+|.|+ ++++|||||+|++.++|++|++.+++. .| ++|+|.|+..+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~~---~g--~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVGL---VD--NPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCBC---SS--SBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCCC---CC--CeEEEEEccCC
Confidence 578999999999999999999998 368999999999999999999987763 33 67999999775
No 339
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=101.07 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=65.1
Q ss_pred CceEEEeCCC-------CCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 020372 241 GANLFIYHIP-------QEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 313 (327)
Q Consensus 241 ~~~l~v~nLp-------~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l 313 (327)
..+|.|.-.. ..+++++|+++|++||.|.+|+|+ ++++|||||+|.+.++|+.|++.+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4567666554 458999999999999999999987 35799999999999999999998554 679999
Q ss_pred EEEEccCCCCC
Q 020372 314 KVQLKRDNKQN 324 (327)
Q Consensus 314 ~v~~~~~~~~~ 324 (327)
+|++++++...
T Consensus 83 ~V~~a~~~~~~ 93 (100)
T 2d9o_A 83 KISWLEGQPQD 93 (100)
T ss_dssp EEECSSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999877544
No 340
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=2.5e-14 Score=115.71 Aligned_cols=70 Identities=27% Similarity=0.479 Sum_probs=65.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
||+++|+++|+++|++||.|.+|.+.+++ +|+++|||||+|.+.++|.+|++.|||..+ +| +.|+|.+|.
T Consensus 102 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~V~~As 172 (172)
T 2g4b_A 102 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL-GD--KKLLVQRAS 172 (172)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE-TT--EECEEEECC
T ss_pred CCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE-CC--eEEEEEeCC
Confidence 79999999999999999999999999996 999999999999999999999999999874 55 669999973
No 341
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=7.2e-15 Score=107.28 Aligned_cols=68 Identities=22% Similarity=0.406 Sum_probs=60.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|..+ ..+|+++|||||+|.+.++|.+|++.|||.. +.| +.|+|.++..+
T Consensus 24 L~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 91 (96)
T 1fjc_A 24 LSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE-IDG--RSVSLYYTGEK 91 (96)
T ss_dssp CCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE-ETT--EEEEEEECSSS
T ss_pred CCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEEEEEcCCC
Confidence 89999999999999999988766 4578899999999999999999999999976 455 66999999765
No 342
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.52 E-value=2e-14 Score=113.97 Aligned_cols=68 Identities=25% Similarity=0.517 Sum_probs=62.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+|+++++ ++|||||+|.+.++|.+|++.|||.. +.| ++|+|.++..+
T Consensus 81 l~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 148 (150)
T 2i2y_A 81 LGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRT-LCG--CRVRVELSNGE 148 (150)
T ss_dssp CCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSC-SSS--SCCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEEEEcCCC
Confidence 8999999999999999999999999987 68999999999999999999999987 455 66999999765
No 343
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.9e-14 Score=105.07 Aligned_cols=66 Identities=24% Similarity=0.492 Sum_probs=59.1
Q ss_pred CCc-CCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 2 LPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 2 Lp~-~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
||+ ++|+++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.|||..+. | +.|+|.++..+.
T Consensus 18 lp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~-g--~~l~V~~a~~~~ 84 (96)
T 2kvi_A 18 LPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNF-G--KKLILEVSSSNA 84 (96)
T ss_dssp STTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCB-T--TTBCEEEEECCC
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeC-C--cEEEEEEcCcCC
Confidence 788 99999999999999999999994 689999999999999999999998754 5 569999997654
No 344
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=102.77 Aligned_cols=65 Identities=22% Similarity=0.446 Sum_probs=59.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.++++ ||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 18 Lp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~V~~a~~~ 82 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEF-QG--KRMHVQLSTSR 82 (92)
T ss_dssp CCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEE-TT--EEEEEEESSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCee-CC--cEEEEEEccCC
Confidence 8999999999999999999999999855 999999999999999999999874 45 66999999875
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=101.00 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=56.2
Q ss_pred CCcCCCHHH----HHHHhccc-CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAE----VSALFSIY-GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~d----L~~~F~~~-G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++++++ |+++|++| |+|.+| +| |||||+|.+.++|++|++.|||..+++ |+|+|.||+.+
T Consensus 17 L~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~g---r~i~v~~A~~~ 84 (96)
T 2diu_A 17 LPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFG---NRIIVSFTPKN 84 (96)
T ss_dssp CCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSS---SCCEEESSCCS
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCC---ceEEEEecCCC
Confidence 899999988 55899999 599988 33 999999999999999999999998665 77999999876
No 346
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=1.1e-14 Score=107.75 Aligned_cols=67 Identities=21% Similarity=0.381 Sum_probs=59.4
Q ss_pred CHHHHHHHhcccCCeeEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 7 SEAEVSALFSIYGTIKDLQILRGSQ---QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~~~~~~~---g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
.++||++.|++||.|++|.|+++.. ++++|||||+|.+.++|.+|++.|||.. ++| |.|+|.++...
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~-f~G--R~i~v~~~~~~ 97 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK-FAN--RVVVTKYCDPD 97 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEEECHH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE-eCC--CEEEEEEeCHH
Confidence 5689999999999999999999864 3689999999999999999999999976 556 67999998654
No 347
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.51 E-value=7.7e-14 Score=104.53 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=66.7
Q ss_pred CCCceEEEeCCCCCCC----------HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 020372 239 PPGANLFIYHIPQEFG----------DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 308 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t----------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i 308 (327)
.++++|.++|+-..-. ++||++.|++||.|.+|.|.++. ++|++||+|.+.++|.+|+..|||++|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678999999954322 36899999999999999886543 689999999999999999999999999
Q ss_pred CCcEEEEEEcc
Q 020372 309 GGKKLKVQLKR 319 (327)
Q Consensus 309 ~g~~l~v~~~~ 319 (327)
+||.|+|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999864
No 348
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=7.1e-14 Score=121.15 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=71.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 317 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 317 (327)
....++|||+|||+++|+++|+++|++||.|..|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34568999999999999999999999999999999864 368999999999999999999999999999999999
Q ss_pred ccCC
Q 020372 318 KRDN 321 (327)
Q Consensus 318 ~~~~ 321 (327)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8653
No 349
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=6.5e-15 Score=115.78 Aligned_cols=74 Identities=28% Similarity=0.392 Sum_probs=62.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEE------EEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDL------QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v------~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||+++|+++|+++|+.||.|.+| .+....+|+++|||||+|.+.++|.+|++.|||..+ .| +.|+|.+++.
T Consensus 53 Lp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~-~g--~~l~V~~a~~ 129 (143)
T 3egn_A 53 LAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL-FG--KPMVVQFARS 129 (143)
T ss_dssp ECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE-TT--EECEEEECCC
T ss_pred CCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe-CC--cEEEEEECCC
Confidence 79999999999999999998875 122224789999999999999999999999999875 45 6799999976
Q ss_pred hHH
Q 020372 76 EKE 78 (327)
Q Consensus 76 ~~~ 78 (327)
...
T Consensus 130 ~~~ 132 (143)
T 3egn_A 130 ARP 132 (143)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 350
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=3.3e-14 Score=101.96 Aligned_cols=66 Identities=27% Similarity=0.363 Sum_probs=59.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||+||+++|++| .|.+|++. +++|||||+|.+.++|++|++.|||.. +.| +.|+|.++...
T Consensus 13 Lp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V~~a~~~ 78 (88)
T 1wg1_A 13 LPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYS-FRG--KDLIVQLQPTD 78 (88)
T ss_dssp CCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEE-ETT--EEEEEEECCCC
T ss_pred CCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCe-ECC--cEEEEEEcCCC
Confidence 89999999999999999 99999984 579999999999999999999999987 455 66999999664
No 351
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.3e-14 Score=101.83 Aligned_cols=65 Identities=23% Similarity=0.428 Sum_probs=59.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|+++++ ||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 17 lp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~v~~a~~~ 81 (90)
T 2dnp_A 17 VSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEV-KG--KRINVELSTKG 81 (90)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEE-TT--EECEEEESCCC
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEE-CC--cEEEEEECCCC
Confidence 8999999999999999999999999855 999999999999999999999874 45 66999999775
No 352
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=4.2e-14 Score=104.59 Aligned_cols=65 Identities=28% Similarity=0.589 Sum_probs=59.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|.+++ |||||+|.+.++|++|++.|||.. +.| +.|+|.++..+
T Consensus 19 l~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~ 83 (103)
T 2dgu_A 19 LANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKD-LEG--ENIEIVFAKPP 83 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEE-ETT--EEEEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCc-cCC--CEEEEEEcCCC
Confidence 899999999999999999999999874 499999999999999999999986 445 67999999876
No 353
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.4e-14 Score=103.84 Aligned_cols=66 Identities=23% Similarity=0.431 Sum_probs=57.8
Q ss_pred CCcCCCHHHHHHHhcccCC-eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING-KHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~-i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g-~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| .. +.| +.|+|.++..+
T Consensus 16 Lp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~-~~g--~~l~v~~a~~~ 83 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVE-LHG--KIMEVDYSVSK 83 (93)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCE-ETT--EECEEEECCCC
T ss_pred CCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCee-ECC--EEEEEEEccCc
Confidence 8999999999999999999 6666652 488999999999999999999999 66 455 66999999875
No 354
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=6.4e-14 Score=105.75 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCc---ccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS---VPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~---~~l~v~~a~~ 75 (327)
||+++||+||+++|++||.|++|.|+++ |||||+|++.++|++||+.|||.. +.|+. ..|+|..+..
T Consensus 24 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~-~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 24 LPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTK-FRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp CCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCB-CCCTTSCCCBCEEEECC-
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCE-ECCcEeeeEEEEeccCCC
Confidence 8999999999999999999999999876 899999999999999999999987 45532 1267777655
No 355
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=9.6e-14 Score=114.93 Aligned_cols=75 Identities=24% Similarity=0.461 Sum_probs=65.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAF----G-------RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 308 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i 308 (327)
..++|||+|||+.+++++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 4555544 446899999999999999999 7999999
Q ss_pred CCcEEEEEEccCC
Q 020372 309 GGKKLKVQLKRDN 321 (327)
Q Consensus 309 ~g~~l~v~~~~~~ 321 (327)
.|+.|+|.+++..
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998765
No 356
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=102.61 Aligned_cols=65 Identities=32% Similarity=0.535 Sum_probs=58.3
Q ss_pred cCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 4 ~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
+++|+++|+++|++||.|.+|.+. +++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 23 ~~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l~v~~a~~~ 87 (97)
T 1x5p_A 23 EDMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQV-ES--VQLKVNIARKQ 87 (97)
T ss_dssp SSCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEE-TT--EEEEEECCSSC
T ss_pred CCCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeE-CC--eEEEEEECCCC
Confidence 379999999999999999999995 4689999999999999999999999875 55 67999999875
No 357
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=4.3e-14 Score=105.83 Aligned_cols=65 Identities=31% Similarity=0.510 Sum_probs=59.2
Q ss_pred CCcC-CCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~-~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||++ +|++||+++|++||.|.+|.+ ++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+
T Consensus 35 l~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~V~~a~~~ 100 (110)
T 1wf1_A 35 LNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVL-AG--QTLDINMAGEP 100 (110)
T ss_dssp CCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEE-TT--EECCEEESCCC
T ss_pred CCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEE-CC--eEEEEEECCCC
Confidence 7899 999999999999999999999 578999999999999999999999874 45 66999999754
No 358
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=100.94 Aligned_cols=69 Identities=26% Similarity=0.429 Sum_probs=60.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEE-EEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDL-QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v-~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+| .+++++. .|.|||+|.+.++|.+|++.|||..+ .| +.|+|.++.++
T Consensus 23 lp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l~V~~a~~~ 92 (96)
T 2e44_A 23 IPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQL-EN--FTLKVAYIPDE 92 (96)
T ss_dssp ECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBC-SS--CBCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEEEEEcCcc
Confidence 79999999999999999999999 5888753 23499999999999999999999874 45 56999999875
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=1.6e-13 Score=113.17 Aligned_cols=71 Identities=17% Similarity=0.326 Sum_probs=64.5
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++||.|.+|++.++.+|+++|||||+|++.++|.+|++.++. . ++| +.|+|.++...
T Consensus 117 Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~-~~G--r~l~V~~~~~y 187 (193)
T 2voo_A 117 FPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-K-YKE--TDLLILFKDDY 187 (193)
T ss_dssp CCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-E-ETT--EECEEEETTTC
T ss_pred CCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-e-ECC--EEEEEEEhHHH
Confidence 89999999999999999999999999998999999999999999999999987764 4 666 56999998765
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=1e-13 Score=104.58 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=58.8
Q ss_pred CHHHHHHHhcccCCeeEEEEeeCC-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 7 SEAEVSALFSIYGTIKDLQILRGS-----QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~~~~~~-----~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
.++||++.|++||.|.+|.|++++ +++++||+||+|.+.++|.+|++.|||.. ++| |.|+|.++..
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~-f~G--R~i~v~~~~~ 108 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FAG--RKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEEECH
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE-ECC--cEEEEEEcCh
Confidence 479999999999999999999985 35788999999999999999999999976 566 6799999865
No 361
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.45 E-value=1.8e-13 Score=104.13 Aligned_cols=66 Identities=32% Similarity=0.523 Sum_probs=58.9
Q ss_pred cCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCChH
Q 020372 4 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 77 (327)
Q Consensus 4 ~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~~ 77 (327)
+++|+++|+++|++||.|.+|.+. +++|||||+|.+.++|++|++.|||..+ .| +.|+|.++..+.
T Consensus 47 l~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~-~g--~~l~V~~a~~~~ 112 (121)
T 2bz2_A 47 EDMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQV-ES--VQLKVNIARKQP 112 (121)
T ss_dssp SSCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBC-SS--CBCEEEECCSSC
T ss_pred CCCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEEEEEeCCCC
Confidence 369999999999999999999996 4689999999999999999999999874 55 569999998763
No 362
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=104.39 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=50.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-C---CCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-Q---QTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~---g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
||+++||++|+++|++||.|. +.+++++ + |+++|||||+|++.++|++||+.|+
T Consensus 16 Lp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 16 LPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 899999999999999999999 8888775 4 7999999999999999999999983
No 363
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.44 E-value=1.5e-13 Score=127.18 Aligned_cols=72 Identities=22% Similarity=0.495 Sum_probs=66.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+.+|+++|+++|+.||.|+.|.|+.++ +|+++|||||+|.+.++|.+||+.|||.. +.| +.|.|.++...
T Consensus 110 L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~-i~g--r~i~V~~a~~~ 182 (437)
T 3pgw_S 110 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK-IDG--RRVLVDVERGR 182 (437)
T ss_pred CCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE-ECC--EEEEEEEeCCC
Confidence 89999999999999999999999999996 89999999999999999999999999986 455 56999999764
No 364
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.6e-13 Score=99.51 Aligned_cols=65 Identities=28% Similarity=0.498 Sum_probs=58.7
Q ss_pred CCcCCCHHHHHHHhccc--CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~--G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|++| |.|.+|.+. +|||||+|.+.++|++|++.|||..+ .| +.|+|.+++.+
T Consensus 23 Lp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~v~~a~~~ 89 (99)
T 2cpd_A 23 LMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVL-DG--SPIEVTLAKPV 89 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEE-TT--EEEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEe-CC--cEEEEEECCCC
Confidence 89999999999999999 999999875 56999999999999999999999874 45 67999999875
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=3.2e-13 Score=120.07 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCCCCceEEEeC--CCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee---CCc
Q 020372 237 EGPPGANLFIYH--IPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL---GGK 311 (327)
Q Consensus 237 ~~~~~~~l~v~n--Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i---~g~ 311 (327)
...++.+|||+| |++.+++++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||+++ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356789999999 578999999999999999999987753 469999999999999999999999988 355
Q ss_pred --EEEEEEcc
Q 020372 312 --KLKVQLKR 319 (327)
Q Consensus 312 --~l~v~~~~ 319 (327)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777764
No 366
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=99.23 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=57.1
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++|+++|+++|+.||.|.+| +.++ +|+ ||||+|.+.++|++|++ |||.. +.| +.|+|.++..+
T Consensus 16 l~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~-~~g--~~l~V~~a~~~ 82 (94)
T 2e5g_A 16 FPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHS-LGG--HRLRVRPREQK 82 (94)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCE-ETT--EECCCBCSCCS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeE-ECC--EEEEEEECCcC
Confidence 89999999999999999999987 4453 555 99999999999999999 99987 455 66999988754
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.1e-13 Score=102.44 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=55.9
Q ss_pred CHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 7 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
++++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.|||..+ +| |+|+|.++..+
T Consensus 39 ~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~-~g--r~l~v~~a~~~ 102 (112)
T 2dit_A 39 IREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF-GG--RQITAQAWDGT 102 (112)
T ss_dssp HHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE-TT--EECEEEECCSC
T ss_pred HHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE-CC--cEEEEEEeCCC
Confidence 47899999999999999966 554 3799999999999999999999999874 55 67999999765
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=5.4e-13 Score=112.68 Aligned_cols=67 Identities=30% Similarity=0.580 Sum_probs=56.0
Q ss_pred CHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC-----------CCCcccEEEEeCCC
Q 020372 7 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM-----------EGSSVPLVVKWADT 75 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~-----------~g~~~~l~v~~a~~ 75 (327)
||++|+++|++||.|++|+|+++ ||||||+|.+.++|+.|++.|+|+.++ .| +.|.|.||..
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~g--r~L~V~wA~~ 228 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREG--TGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGS--CCCEEEECC-
T ss_pred cHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCC--CEEEEEEccC
Confidence 79999999999999999999864 899999999999999999999998862 44 6699999987
Q ss_pred hHHHH
Q 020372 76 EKERQ 80 (327)
Q Consensus 76 ~~~~~ 80 (327)
...+.
T Consensus 229 ~pnp~ 233 (240)
T 3u1l_A 229 DPDPA 233 (240)
T ss_dssp -----
T ss_pred CCCHH
Confidence 65443
No 369
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=5.2e-13 Score=95.34 Aligned_cols=62 Identities=24% Similarity=0.496 Sum_probs=55.8
Q ss_pred CCcCCCHHHHHHHhccc----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEE
Q 020372 2 LPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 70 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~----G-------~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v 70 (327)
||+++|+++|+++|+.| | .|.+|.+.++ +|||||+|.+.++|++|+ .|||.. +.| +.|+|
T Consensus 14 Lp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~V 84 (87)
T 2hzc_A 14 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGII-FQG--QSLKI 84 (87)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCE-ETT--EECEE
T ss_pred CCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCE-ECC--eEEEE
Confidence 89999999999999999 8 9999999876 889999999999999999 999987 455 56888
Q ss_pred Ee
Q 020372 71 KW 72 (327)
Q Consensus 71 ~~ 72 (327)
..
T Consensus 85 ~r 86 (87)
T 2hzc_A 85 RR 86 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=5.6e-13 Score=99.84 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=56.2
Q ss_pred CHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 7 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 7 te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
.++||++.|++||.|++|.|.++. ++|||||+|.+.++|.+|++.|||.. ++| |.|+|.++...
T Consensus 30 l~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~-f~G--R~i~v~~~~~~ 93 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRW-FAG--KMITAAYVPLP 93 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCE-ETT--EECEEEEECHH
T ss_pred HHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEEEEEEcHH
Confidence 467999999999999999997764 59999999999999999999999976 566 67999999643
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=1.4e-12 Score=116.04 Aligned_cols=69 Identities=22% Similarity=0.411 Sum_probs=59.9
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCC--CcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG--SSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g--~~~~l~v~~a~~ 75 (327)
|++.+||++|+++|++||.|++|.+.+ +||||||+|.+.++|++||+.|||+.++.. +..+|+|.|++.
T Consensus 28 l~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 28 LGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 98 (345)
T ss_dssp GGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeec
Confidence 578999999999999999999988764 489999999999999999999999988533 434789999853
No 372
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=9.2e-13 Score=94.32 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=55.2
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||+++||++|+++|++||.|.+|+++++ ++|||||+|.+.++|++| ++.. +.+..+.|+|.++.++
T Consensus 13 Lp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~----~~~~-~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 13 CTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL----CGED-LIIKGISVHISNAEPK 78 (88)
T ss_dssp CCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT----TTCE-EEETTEEEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH----hcCC-ceeCCEEEEEEecCCC
Confidence 8999999999999999999999999876 689999999999999754 4443 2222367999999775
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=7.9e-12 Score=87.75 Aligned_cols=75 Identities=28% Similarity=0.484 Sum_probs=63.8
Q ss_pred CCCCceEEEeCCC----CCCCH----HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeC
Q 020372 238 GPPGANLFIYHIP----QEFGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 309 (327)
Q Consensus 238 ~~~~~~l~v~nLp----~~~t~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~ 309 (327)
.++.-||+|.-++ ..+-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+|+. |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 4567788888776 23333 6899999999999999998764 8999999999999999 9999999
Q ss_pred CcEEEEEEccCC
Q 020372 310 GKKLKVQLKRDN 321 (327)
Q Consensus 310 g~~l~v~~~~~~ 321 (327)
||.|+|.++.+.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998753
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.1e-11 Score=92.88 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=68.0
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHhc--CceeCCcEE
Q 020372 238 GPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES-PASAQNAIAMMN--GCQLGGKKL 313 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~-~~~A~~A~~~l~--g~~i~g~~l 313 (327)
-++++.|+|+||+.. ++.++|+++|++||.|.+|.+..+.. .|||+|.+ .++|..|+..|+ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 457899999999999 99999999999999999999998763 69999999 899999999995 778999998
Q ss_pred EEEEc
Q 020372 314 KVQLK 318 (327)
Q Consensus 314 ~v~~~ 318 (327)
++++.
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.4e-10 Score=81.80 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=62.5
Q ss_pred CCCCceEEEeCCCCC-----CCH----HHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 020372 238 GPPGANLFIYHIPQE-----FGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 308 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~-----~t~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i 308 (327)
.++.-||+|.-++.. +.. .+|.+.|++||.|..+++..++ +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 567789999988743 322 5799999999999999998763 9999999999999999 999999
Q ss_pred CCcEEEEEEc
Q 020372 309 GGKKLKVQLK 318 (327)
Q Consensus 309 ~g~~l~v~~~ 318 (327)
+||.|+|++.
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999874
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.10 E-value=1.7e-10 Score=97.29 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=65.8
Q ss_pred CceEEEeCCCC-----CCCHHHHHHHhhccCCeeEEEEEecC----CCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCc
Q 020372 241 GANLFIYHIPQ-----EFGDQELGNAFQAFGRVLSAKVFVDK----ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 311 (327)
Q Consensus 241 ~~~l~v~nLp~-----~~t~~~L~~~F~~~G~i~~v~i~~~~----~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~ 311 (327)
...+.+.|+-. .-.+++|++.|++||.|.++.|..+. .+++++|++||+|.+.++|.+|+..|||++++||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 34555555532 23468999999999999999998654 3458999999999999999999999999999999
Q ss_pred EEEEEEcc
Q 020372 312 KLKVQLKR 319 (327)
Q Consensus 312 ~l~v~~~~ 319 (327)
.|++.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999864
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.06 E-value=3.2e-10 Score=95.58 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=58.7
Q ss_pred CCHHHHHHHhcccCCeeEEEEeeCC-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 6 VSEAEVSALFSIYGTIKDLQILRGS-----QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 6 ~te~dL~~~F~~~G~i~~v~~~~~~-----~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
-.++||++.|++||.|.+|.|.++. +++++|++||+|.+.++|.+|++.|||.. +.| |+|+|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~-~~g--r~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FAG--RKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB-SSS--SBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce-ECC--eEEEEEEcCH
Confidence 3578999999999999999998764 34899999999999999999999999975 666 6699999864
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=7.1e-10 Score=77.81 Aligned_cols=57 Identities=16% Similarity=0.341 Sum_probs=50.7
Q ss_pred HHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 9 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 9 ~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
.+|.+.|+.||.|..+++..+ .+||+|++.++|.+||+ |||+. +.| |.|+|.++.+.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~-v~G--r~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKE-LLN--RTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCE-ETT--EEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeE-eCC--eEEEEEeCCCC
Confidence 578999999999999999998 49999999999999998 99987 555 67999998753
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=1.3e-08 Score=76.09 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=56.1
Q ss_pred CCcC-CCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCC-HHHHHHHHHHhc-CCccCCCCcccEEEEeCCCh
Q 020372 2 LPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYET-KEQALAALEAIN-GKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~-~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~-~e~A~~Ai~~l~-g~~~~~g~~~~l~v~~a~~~ 76 (327)
|+++ +++++|+++|+.||+|..|.+.++.. .|||+|.+ .++|.+|++.|+ |...+.|. .+++....-.
T Consensus 26 l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~--~~~~evL~Ge 96 (121)
T 1owx_A 26 DLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNK--EVTWEVLEGE 96 (121)
T ss_dssp SCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSS--SEEEEECCHH
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCc--EEEEEECCCH
Confidence 6788 99999999999999999999999865 69999999 899999999985 33345554 4777766543
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=9.9e-09 Score=72.33 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=48.5
Q ss_pred HHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCC
Q 020372 9 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 74 (327)
Q Consensus 9 ~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~ 74 (327)
.+|.+.|+.||.|..|++..| -+||+|.+.++|.+||+ |||+.+. | |.|+|.+..
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~-G--r~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVK-G--RAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEET-T--EEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeC-C--eEEEEeccC
Confidence 568999999999999999998 39999999999999998 9998854 4 679998754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.6e-07 Score=67.47 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=65.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcc-----CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAF-----GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~-----G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
.++|-+-|||..+++..|+.+.+++ |.|..+.+..|. +-|+|+|.+...|.+|...|+|.+|+||+|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 6889999999999999999999999 999999998875 37999999999999999999999999999998
Q ss_pred E
Q 020372 316 Q 316 (327)
Q Consensus 316 ~ 316 (327)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 5
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=2.3e-06 Score=61.30 Aligned_cols=76 Identities=13% Similarity=0.220 Sum_probs=64.9
Q ss_pred CceEEEeCCCCCC-C----HHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEE
Q 020372 241 GANLFIYHIPQEF-G----DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 315 (327)
Q Consensus 241 ~~~l~v~nLp~~~-t----~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 315 (327)
.++|+|+||+..+ . .+.++++|..|+.+.....+++- .-..|.|.++++|.+|...||+..+.|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998765 2 26789999999999888777653 25789999999999999999999999999999
Q ss_pred EEccCCC
Q 020372 316 QLKRDNK 322 (327)
Q Consensus 316 ~~~~~~~ 322 (327)
-++.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9987543
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=4.1e-05 Score=55.02 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=58.0
Q ss_pred CCcCCCHHHHHHHhccc-----CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 2 LPKNVSEAEVSALFSIY-----GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~-----G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
||-.++...|+.+..+| |.|..+.+..|- |=|+|+|.+..+|-+|.-.|+|..|. | |.|+|.-...-
T Consensus 29 ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~-g--r~Lr~gTv~eL 100 (117)
T 2l9w_A 29 LSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQ-G--KVIRSGTINDM 100 (117)
T ss_dssp CCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEET-T--EEEEEECHHHH
T ss_pred CCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeec-C--eEEEecCHHHH
Confidence 68899999999999999 999999999994 35999999999999999999998754 5 66888755443
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00027 Score=50.35 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=62.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhc-----cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEE
Q 020372 239 PPGANLFIYHIPQEFGDQELGNAFQA-----FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 313 (327)
Q Consensus 239 ~~~~~l~v~nLp~~~t~~~L~~~F~~-----~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l 313 (327)
....+|.|.|||..++++.|.-+|+. -|+|..+.... +-|+|+|.+.+.|++.++. ..+.+.+.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 35689999999999999999999986 26688887754 3799999999999999985 5778888999
Q ss_pred EEEEccCCCCC
Q 020372 314 KVQLKRDNKQN 324 (327)
Q Consensus 314 ~v~~~~~~~~~ 324 (327)
.|.-..++..+
T Consensus 77 sV~P~~~~~~~ 87 (104)
T 2dhx_A 77 SLRPAPPRAPA 87 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEcCCCCCcc
Confidence 88755444433
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.77 E-value=0.00019 Score=50.51 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=46.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 304 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~ 304 (327)
..++++| ++|..+.-.||.++|++||. ..|..+.|- -|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4466667 99999999999999999984 445666664 89999999999999999764
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.77 E-value=0.00019 Score=50.52 Aligned_cols=67 Identities=9% Similarity=0.178 Sum_probs=57.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhcCcee
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGV--SKCFGFVSYESPASAQNAIAMMNGCQL 308 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~--~~G~afV~f~~~~~A~~A~~~l~g~~i 308 (327)
+.|.|++||+.+|++++.+.++....+.....+..+.+.+ ..+.|+|.|.+.+++..-.+.++|+.|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4688999999999999999999999888887777653332 336799999999999999999999977
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00043 Score=51.00 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=57.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCC-cEEEEE
Q 020372 238 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-KKLKVQ 316 (327)
Q Consensus 238 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g-~~l~v~ 316 (327)
....+.|.|.+.|... ...|.+.|++||.|.+..... ...+-.|.|.+..+|++||.. ||..++| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 4456788899999885 567889999999999877621 234899999999999999996 9999985 556665
Q ss_pred E
Q 020372 317 L 317 (327)
Q Consensus 317 ~ 317 (327)
.
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.31 E-value=0.00042 Score=48.93 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=46.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 304 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~ 304 (327)
++++| ++|..+.-.||..+|++|| -..|..+-|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999998 5567777664 89999999999999999764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.08 E-value=0.0023 Score=44.96 Aligned_cols=72 Identities=11% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC--CC-CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcc--cEEEEeC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS--QQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSV--PLVVKWA 73 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~--~g-~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~--~l~v~~a 73 (327)
||+.+||+++.+.++.+..+.....+..+ .+ ..-.-|||.|.+.|++..-.+.++|..|.+.+.. +-.|.+|
T Consensus 9 LPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~A 85 (91)
T 1uw4_A 9 LPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFA 85 (91)
T ss_dssp ECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEEC
T ss_pred CCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEc
Confidence 89999999999999999988777766554 22 2336799999999999999999999988776532 2345555
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.05 E-value=0.0015 Score=46.00 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=40.4
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
.|.++.-.||.++|+.||.| .|+-+-| + -|||.|.+++.|..|+.++.
T Consensus 23 FP~ewKt~DI~~lFs~fggv-~I~WidD-T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 23 FPKEWKTSDLYQLFSAFGNI-QISWIDD-T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCTTCCHHHHHHHHTTTCSC-CCEEEET-T-----EEEEECSCHHHHHHHHHHHH
T ss_pred CChhhhhHHHHHHhhccCCE-EEEEEcC-C-----eEEEEecCHHHHHHHHHhcc
Confidence 48899999999999999965 4555554 2 79999999999999999874
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.99 E-value=0.0012 Score=47.21 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 9 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 9 ~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
+.++++|..|+++.+...++. -+-..|.|.++++|.+|...||+..+. | +.|+|-|+..
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~-g--~~~r~YFgq~ 83 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFL-G--KEMKLYFAQT 83 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEET-T--EECEEECCCC
T ss_pred HHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceec-C--ceeEEEecCC
Confidence 678999999999999888886 336899999999999999999998855 4 4599999974
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.0026 Score=46.78 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=47.0
Q ss_pred HHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCCh
Q 020372 8 EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 76 (327)
Q Consensus 8 e~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~~ 76 (327)
-..+.+.|++||.|++.......| .-.|+|+++.+|++|+ ..||.. +.|. ..|-|.+...+
T Consensus 37 ~~~VL~~F~~~G~Iv~~~~~~~~N-----WihI~Y~s~~~A~rAL-~kNG~i-i~g~-~mIGV~p~~d~ 97 (119)
T 1wwh_A 37 ASYILLQFAQYGNILKHVMSNTGN-----WMHIRYQSKLQARKAL-SKDGRI-FGES-IMIGVKPCIDK 97 (119)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSSS-----EEEEEESSHHHHHHHH-TTTTCE-ETTT-EECEEEECCCH
T ss_pred HHHHHHHHHhhCcEEEeccCCCCC-----eEEEEeCCHHHHHHHH-HhCCeE-ecCC-EEEEEEECCCH
Confidence 456789999999999888733323 9999999999999999 568865 4433 46788887654
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.77 E-value=0.0013 Score=46.57 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=52.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhcCcee
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGV--SKCFGFVSYESPASAQNAIAMMNGCQL 308 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~--~~G~afV~f~~~~~A~~A~~~l~g~~i 308 (327)
+-.|.|+.||+.+|++++.+.+++.-.+.+...+..+.+.+ .-..|+|.|.+.++...-.+.++|..|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 56789999999999999888887765555544444332222 225689999999999999999999977
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.42 E-value=0.0026 Score=47.47 Aligned_cols=75 Identities=24% Similarity=0.450 Sum_probs=53.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEEec--------CCCCC-----cceEEEEEeCCHHHHHHHHHHhcCce
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVD--------KATGV-----SKCFGFVSYESPASAQNAIAMMNGCQ 307 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~--------~~~~~-----~~G~afV~f~~~~~A~~A~~~l~g~~ 307 (327)
..|.|.+.|+..++ .+.+.|++||.|.+ +.+..+ +...+ ......|+|++..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 45667788777665 47788999999876 211110 00011 245779999999999999996 9999
Q ss_pred eCCcEEEEEEc
Q 020372 308 LGGKKLKVQLK 318 (327)
Q Consensus 308 i~g~~l~v~~~ 318 (327)
|+|..|-|...
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777643
No 395
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.39 E-value=0.017 Score=41.09 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=47.7
Q ss_pred CCcCCCHHHHHHHhcc---c--CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeCCC
Q 020372 2 LPKNVSEAEVSALFSI---Y--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 75 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~---~--G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a~~ 75 (327)
||.++.++.|+-+|+. - |.|.+|....+ -|+|+|.+.+.|++.++.-. +.+.+ .+|.|...-+
T Consensus 16 lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~-------~AvItF~d~~va~rVL~k~~--H~L~~--~~LsV~P~~~ 83 (104)
T 2dhx_A 16 LPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC-------GGVLTFREPADAERVLAQAD--HELHG--AQLSLRPAPP 83 (104)
T ss_dssp CCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT-------EEEEEESSHHHHHHHHTCSC--CBSSS--SBCEEEECCC
T ss_pred CCCCCChhHheEEEeCCCcCCCceeeEEEEcCC-------cEEEEEcChHHHHHHhcCCc--ceecC--eEEEEEcCCC
Confidence 7889999999999977 2 47888887652 79999999999999987622 22444 3477776543
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0063 Score=42.92 Aligned_cols=48 Identities=25% Similarity=0.467 Sum_probs=40.3
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
.|.++.-.||.++|+.||.| .|.-+-| + -|||.|.+++.|..|+.++.
T Consensus 13 FP~ewKt~Di~~lFs~fggv-~I~WidD-T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 13 FPKEWKTSDLYQLFSAFGNI-QISWIDD-T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp CCTTCCHHHHHHHTTTSEEE-EEEEEET-T-----EEEEEEEEECHHHHHHHHHT
T ss_pred CChhhhhHHHHHHHhccCCE-EEEEEcC-C-----eEEEEecCHHHHHHHHHhcc
Confidence 48899999999999999944 4555554 3 79999999999999999875
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.76 E-value=0.0086 Score=42.31 Aligned_cols=72 Identities=13% Similarity=0.266 Sum_probs=50.8
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCC--CCC-cccEEEEEeCCHHHHHHHHHHhcCCccCCCCc--ccEEEEeC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGS--QQT-SKGCAFLKYETKEQALAALEAINGKHKMEGSS--VPLVVKWA 73 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~--~g~-skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~--~~l~v~~a 73 (327)
||+.+||+++.+.++..-.+.....+..+ .+. .-.-|||.|.+.|+...-.+..+|..|.+.+. -+-.|.+|
T Consensus 17 LPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~A 93 (97)
T 2l08_A 17 LPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFA 93 (97)
T ss_dssp CCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEEC
T ss_pred CCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEec
Confidence 89999999998888877655332322222 111 12569999999999999999999998877643 23445555
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.65 E-value=0.0068 Score=55.70 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=41.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020372 242 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302 (327)
Q Consensus 242 ~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~ 302 (327)
++|+|. .+..+++.+|.++|++||.|.++.+-.++ | -||.|||++.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 789998 79999999999999999999998887653 3 4999999999998876653
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.36 E-value=0.0061 Score=56.04 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=35.0
Q ss_pred CcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 020372 3 PKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 53 (327)
Q Consensus 3 p~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~ 53 (327)
|..+++++|.++|++||+|.++.+.+++ .-||.|+|.+.+++..+++
T Consensus 61 ~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 61 PEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp CCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred CCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 6788999999999999999999998763 2499999999999886653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.61 E-value=0.057 Score=40.25 Aligned_cols=64 Identities=30% Similarity=0.402 Sum_probs=44.9
Q ss_pred HHHHHHHhcccCCeeE-EEEeeCCC---------C-----CcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEe
Q 020372 8 EAEVSALFSIYGTIKD-LQILRGSQ---------Q-----TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 72 (327)
Q Consensus 8 e~dL~~~F~~~G~i~~-v~~~~~~~---------g-----~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~ 72 (327)
...+.+.|++||.|.+ +...++.. . .....-.|+|+++.+|.+|+ ..||.. +.|. .|-|.+
T Consensus 20 ~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i-i~G~--mIGV~P 95 (132)
T 3p3d_A 20 ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV-FNGV--LLGVIP 95 (132)
T ss_dssp HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE-ETTE--ECEEEE
T ss_pred HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE-eCcE--EEEEEE
Confidence 4567789999999876 32222100 0 12457799999999999999 678865 6664 688888
Q ss_pred CCC
Q 020372 73 ADT 75 (327)
Q Consensus 73 a~~ 75 (327)
...
T Consensus 96 y~~ 98 (132)
T 3p3d_A 96 YTK 98 (132)
T ss_dssp CCH
T ss_pred CCH
Confidence 853
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.21 E-value=0.7 Score=43.13 Aligned_cols=55 Identities=27% Similarity=0.422 Sum_probs=45.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 304 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~ 304 (327)
+.+++|+ +|..+...+|.++|+.||. .+|+.+-+. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4567776 8999999999999999995 455555442 79999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.43 E-value=2 Score=40.11 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=39.7
Q ss_pred CCcCCCHHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 020372 2 LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g 57 (327)
+|..+...||.++|+.||.| +|+.+-+ + .|||.|.+.+.|..++..+..
T Consensus 447 f~~~~~~~~i~~~fs~fg~v-~V~widd-t-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 447 FPKEWKTSDLYQLFSAFGNI-QISWIDD-T-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CCTTCCHHHHHHHGGGGCCC-EEEECSS-S-----EEEEECSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCE-EEEEEcC-C-----eEEEEECCHHHHHHHHHHHHh
Confidence 36678899999999999965 5554443 2 699999999999999999853
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.21 E-value=14 Score=24.15 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=38.4
Q ss_pred CCCHHHHHHHhhccCC-----eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCceeCCcEEEEEEcc
Q 020372 252 EFGDQELGNAFQAFGR-----VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 319 (327)
Q Consensus 252 ~~t~~~L~~~F~~~G~-----i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 319 (327)
.+...+|..+++.-+. |=.+.|..+ |.||+-.. +.|..++..|++..+.|++++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3566677777765544 344555322 78999875 45788999999999999999998764
No 404
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.03 E-value=27 Score=23.72 Aligned_cols=50 Identities=8% Similarity=0.185 Sum_probs=36.5
Q ss_pred CcCCCHHHHHHHhcc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 020372 3 PKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 54 (327)
Q Consensus 3 p~~~te~dL~~~F~~-~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~ 54 (327)
+.++|..+|++.+++ || +|.+|..+..+.|. --|||+.....+|......
T Consensus 31 d~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 31 DRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC--EEEEEEECTTSCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc--eEEEEEcCCCCcHHHHHHh
Confidence 567899999988866 56 57888877665442 2499999988888776443
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=54.83 E-value=47 Score=22.55 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=46.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020372 240 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 304 (327)
Q Consensus 240 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~ 304 (327)
..|-|.|-|+|..+-..++.-...-.|.--.|... .|-|++.|.+.++...|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 46889999999998888877777777776666654 2469999999999999998764
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.65 E-value=37 Score=26.39 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=38.9
Q ss_pred CceEEEeCCCC-C--------CCHHHHHHHh--hccCCeeEEEEEecCCCCCcceEEEEEeCCHHH-HHHHHH
Q 020372 241 GANLFIYHIPQ-E--------FGDQELGNAF--QAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS-AQNAIA 301 (327)
Q Consensus 241 ~~~l~v~nLp~-~--------~t~~~L~~~F--~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~-A~~A~~ 301 (327)
+.+..|-|++. . .+..+|++.| +.|..+. |+.+-++ .-.+|++.|+|.+.-. -..|+.
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 46777888886 2 3457999977 9998766 4444443 3378999999976543 334444
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=51.52 E-value=3.8 Score=31.26 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=18.0
Q ss_pred HHHHHHHhcccCCeeEEEEeeCCCCCcccEEEEEeC
Q 020372 8 EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 43 (327)
Q Consensus 8 e~dL~~~F~~~G~i~~v~~~~~~~g~skG~afV~F~ 43 (327)
++|+.++|...|+|+. +-. .|||+||+-+
T Consensus 1 ~~~~~~l~~~~G~Vkw--fn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKW--FNV-----RMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEE--EET-----TTTEEEEEEE
T ss_pred CCcccccccceeEEEE--EEC-----CCCeeEEeeC
Confidence 4577788888888873 322 3789999987
No 408
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=50.32 E-value=4.7 Score=28.79 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=37.0
Q ss_pred CCCHHHHHHHhcccCCeeEEEEeeCC-CCCcc-cEEEEEeCCHHHHHHHHHHhcC
Q 020372 5 NVSEAEVSALFSIYGTIKDLQILRGS-QQTSK-GCAFLKYETKEQALAALEAING 57 (327)
Q Consensus 5 ~~te~dL~~~F~~~G~i~~v~~~~~~-~g~sk-G~afV~F~~~e~A~~Ai~~l~g 57 (327)
.-++++|..+.++.+ +..+.+.+.. +|+.. -.-+=.|.+.++|.+|++.|-.
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 345778888888886 5567777653 55443 1234479999999999998864
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.83 E-value=25 Score=27.30 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=30.2
Q ss_pred CCHHHHHHHh--cccCCeeEEEEeeCCCCCcccEEEEEeCCHH
Q 020372 6 VSEAEVSALF--SIYGTIKDLQILRGSQQTSKGCAFLKYETKE 46 (327)
Q Consensus 6 ~te~dL~~~F--~~~G~i~~v~~~~~~~g~skG~afV~F~~~e 46 (327)
.+..+|++.| +.|.++ +|+.+.+..| ..|++.|+|.+--
T Consensus 33 ~s~~~l~~~~~~~~F~p~-kv~~l~~~~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPT-RVRPLWNYLG-HSGTAIVEFNKDW 73 (172)
T ss_dssp CCSHHHHHHHHHTTCCCS-EEEEEECSSB-EEEEEEEECCSSH
T ss_pred CCHHHHHHHHHhcCCCCc-eeEecccCCC-CceeEEEEecCCh
Confidence 3457899977 999886 4777777665 5789999999854
No 410
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=41.84 E-value=34 Score=26.13 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=28.8
Q ss_pred CCHHHHHHHhcccCCee---EEEEeeCC-CCCcccEEEE
Q 020372 6 VSEAEVSALFSIYGTIK---DLQILRGS-QQTSKGCAFL 40 (327)
Q Consensus 6 ~te~dL~~~F~~~G~i~---~v~~~~~~-~g~skG~afV 40 (327)
.|+++|+++=.+.|.+. +..+..|. +|+.+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 68999999999999874 55667775 8999988874
No 411
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=40.01 E-value=54 Score=22.96 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=27.0
Q ss_pred CCCHHHHHHHhc-ccC---CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHH
Q 020372 5 NVSEAEVSALFS-IYG---TIKDLQILRGS--QQTSKGCAFLKYETKEQALAA 51 (327)
Q Consensus 5 ~~te~dL~~~F~-~~G---~i~~v~~~~~~--~g~skG~afV~F~~~e~A~~A 51 (327)
+.+..||++-.+ .|+ ++.-|.=++.. .|++.|||.| |++.+.|.+-
T Consensus 29 tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 29 TPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp CCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 456677775443 333 34444444444 4578898866 7777666543
No 412
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=38.72 E-value=57 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=26.8
Q ss_pred eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 020372 21 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58 (327)
Q Consensus 21 i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~ 58 (327)
|.+|.+... -.||-||+++..++...++....|.
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 666666543 6899999999999988888777664
No 413
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=37.26 E-value=71 Score=22.61 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=27.4
Q ss_pred CCCHHHHHHHh-cccC---CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHH
Q 020372 5 NVSEAEVSALF-SIYG---TIKDLQILRGS--QQTSKGCAFLKYETKEQALA 50 (327)
Q Consensus 5 ~~te~dL~~~F-~~~G---~i~~v~~~~~~--~g~skG~afV~F~~~e~A~~ 50 (327)
+.+..||++-. ..|+ ++.-|.=++.. .|++.|||.| |++.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677777543 3344 33444445554 4678899976 777777654
No 414
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=37.07 E-value=64 Score=22.64 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCCHHHHHHHh-cccC---CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHH
Q 020372 5 NVSEAEVSALF-SIYG---TIKDLQILRGS--QQTSKGCAFLKYETKEQALA 50 (327)
Q Consensus 5 ~~te~dL~~~F-~~~G---~i~~v~~~~~~--~g~skG~afV~F~~~e~A~~ 50 (327)
+.+..||++-. ..|+ ++.-|.=++.. .|++.|||.| |++.+.|.+
T Consensus 29 tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 29 TPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45667777544 3333 34444444444 4678899976 777776653
No 415
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=37.00 E-value=43 Score=22.63 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=33.9
Q ss_pred CcCCCHHHHHHHhcc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHH
Q 020372 3 PKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAA 51 (327)
Q Consensus 3 p~~~te~dL~~~F~~-~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~A 51 (327)
+.++|..+|++.++. || +|.+|..+.-+.| .--|+|+....++|...
T Consensus 30 ~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~--~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 30 DDRASKGEVADAVEEQYDVTVEQVNTQNTMDG--EKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp CTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS--SEEEEEEECTTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCceEEEeeecCCC--ceEEEEEECCCCcHHHH
Confidence 567899999988865 56 5788887776543 22599999887776554
No 416
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=34.41 E-value=24 Score=32.82 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=31.0
Q ss_pred HHHHHh--cccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 020372 10 EVSALF--SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 53 (327)
Q Consensus 10 dL~~~F--~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~ 53 (327)
+|+.+| +.+|.|+++.+...+.......+++.|.+.++|.+|++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 345666 46899998887555444456678999999888766443
No 417
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=33.71 E-value=36 Score=32.67 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHHHh----cccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 020372 10 EVSALF----SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 57 (327)
Q Consensus 10 dL~~~F----~~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g 57 (327)
||..+| .-+|.|+++.|..-+--..+.++++.|.+.++|.+++..+-.
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHH
Confidence 677777 367789988875544444567899999999999999987643
No 418
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=29.64 E-value=42 Score=32.20 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHhh----ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020372 249 IPQEFGDQELGNAFQ----AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 304 (327)
Q Consensus 249 Lp~~~t~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~l~ 304 (327)
.+...+-.||..+|- .+|.|.++.+..-+ --..+.++++.|.+.++|..++..+-
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHHH
Confidence 444555568889882 67899998776654 33456688999999999999887653
No 419
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=28.52 E-value=92 Score=23.28 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=35.7
Q ss_pred CCcCCCHHHHHHHhcc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 020372 2 LPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 54 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~-~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~ 54 (327)
.+.+++..+|++.++. || +|..|..+.-.+|.- -|||......+|.+....
T Consensus 86 Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 86 VSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK--KAYVRLTADYDALDIANR 138 (142)
T ss_dssp ECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE--EEEEEECTTCCHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce--EEEEEeCCCCcHHHHHHh
Confidence 3567888999887755 45 578888776654422 499999888777765433
No 420
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=27.81 E-value=92 Score=23.51 Aligned_cols=51 Identities=10% Similarity=0.311 Sum_probs=35.7
Q ss_pred CCcCCCHHHHHHHhcc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 020372 2 LPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 54 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~-~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~ 54 (327)
.+.+++..+|++.++. |+ +|..|..+...+|.- -|||......+|.+....
T Consensus 94 Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K--KAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 94 VHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK--KAYIRLAADSDSLTLANK 146 (150)
T ss_dssp ECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE--EEEEEECSSSCHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE--EEEEEcCCCCcHHHHHHh
Confidence 3567888999877755 45 578888776655422 499999888777765443
No 421
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.78 E-value=78 Score=21.47 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=20.9
Q ss_pred CeeEEEEeeCC-CCCcccEEEEEeCC
Q 020372 20 TIKDLQILRGS-QQTSKGCAFLKYET 44 (327)
Q Consensus 20 ~i~~v~~~~~~-~g~skG~afV~F~~ 44 (327)
+|++|++.+-. .|+-++||=|.|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888886664 78999999999986
No 422
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=25 Score=22.47 Aligned_cols=11 Identities=9% Similarity=0.513 Sum_probs=9.1
Q ss_pred ccEEEEEeCCH
Q 020372 35 KGCAFLKYETK 45 (327)
Q Consensus 35 kG~afV~F~~~ 45 (327)
++.|||+|++.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 56899999874
No 423
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.08 E-value=76 Score=22.37 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=27.2
Q ss_pred CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 020372 20 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 58 (327)
Q Consensus 20 ~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~g~ 58 (327)
.|.++..... -+||-||+=.++.+..+|++-+.+.
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhcccce
Confidence 3666666443 4899999999999999998876653
No 424
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=24.66 E-value=92 Score=21.73 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=29.7
Q ss_pred CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 20 TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 20 ~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
+|++|++.+-. +|+-++||=|.|++. + ..++..+++|.. -|-|.+.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd~------f-vI~dIkVieg~~-GlFVaMP 51 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDHE------F-VVHDIRVIDGNN-GLFVAMP 51 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT------E-EEEEEEEEEETT-EEEEECC
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE------E-EEeeEEEEECCC-ceEEECC
Confidence 57888886664 789999999999862 1 245555555542 2444443
No 425
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.93 E-value=27 Score=22.92 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=9.5
Q ss_pred ccEEEEEeCCHH
Q 020372 35 KGCAFLKYETKE 46 (327)
Q Consensus 35 kG~afV~F~~~e 46 (327)
++.|||.|++..
T Consensus 54 ~e~ClV~F~D~S 65 (79)
T 2m0o_A 54 REVCLVQFEDDS 65 (79)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 558999998853
No 426
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.83 E-value=99 Score=21.78 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=29.7
Q ss_pred CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCCCcccEEEEeC
Q 020372 20 TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 73 (327)
Q Consensus 20 ~i~~v~~~~~~-~g~skG~afV~F~~~e~A~~Ai~~l~g~~~~~g~~~~l~v~~a 73 (327)
+|++|++.+-. .|+-|+||=|.|++. + ..++.+++.|. .-|-|.+-
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd~------F-vI~dIKViEg~-~GlFVaMP 51 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA------F-VIHDLRVIEGN-SGLFVAMP 51 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETTT------E-EEEEEEEEEET-TEEEEECC
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECCE------E-EEeeEEEEECC-CceEEECC
Confidence 57888886664 789999999999862 1 24555555554 22444443
No 427
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.78 E-value=54 Score=30.34 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=30.3
Q ss_pred HHHHHh--hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 020372 257 ELGNAF--QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 300 (327)
Q Consensus 257 ~L~~~F--~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~ 300 (327)
+|..+| +.+|.|.++.+...+ .......+++.|.+.++|..++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p-~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMP-KPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEE-CCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEe-cCCeEEEEEEEeCCHHHHHHHH
Confidence 456777 368999998776665 2334556899999987776644
No 428
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.98 E-value=1.2e+02 Score=23.13 Aligned_cols=50 Identities=10% Similarity=0.209 Sum_probs=35.0
Q ss_pred CCcCCCHHHHHHHhcc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 020372 2 LPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 53 (327)
Q Consensus 2 Lp~~~te~dL~~~F~~-~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~ 53 (327)
.+.++|..||++.++. || +|..|..+.-..| .--|||.....++|.....
T Consensus 100 Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~--~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 100 VDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDG--EKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp ECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSS--CEEEEEEECTTSCHHHHHH
T ss_pred EECCCCHHHHHHHHHHHhCCcceEEEeeEcCCC--ceEEEEEECCCCcHHHHHH
Confidence 3567889999988865 56 5788887765443 2249999988777665543
No 429
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=22.49 E-value=62 Score=22.52 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCCHHHHHHHh-cccCCeeEEEEe---eCC--CCCcccEEEEEeCCHHHHH
Q 020372 5 NVSEAEVSALF-SIYGTIKDLQIL---RGS--QQTSKGCAFLKYETKEQAL 49 (327)
Q Consensus 5 ~~te~dL~~~F-~~~G~i~~v~~~---~~~--~g~skG~afV~F~~~e~A~ 49 (327)
+.+..||++-. ..|+.-.++.++ +.. .|++.|||.| |++.+.|.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 45677777544 334332233333 332 3578888876 55555444
No 430
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=22.25 E-value=1.5e+02 Score=22.30 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=28.5
Q ss_pred cCCCHHHHHHHhcc-cCC---eeEEEEeeCC--CCCcccEEEEEeCCHHHHHH
Q 020372 4 KNVSEAEVSALFSI-YGT---IKDLQILRGS--QQTSKGCAFLKYETKEQALA 50 (327)
Q Consensus 4 ~~~te~dL~~~F~~-~G~---i~~v~~~~~~--~g~skG~afV~F~~~e~A~~ 50 (327)
.+.+..||++-.+. |+. ++-|.=++.. .|++.|||.| |++.|.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 35677888875544 553 3334434444 4578899987 777766654
No 431
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=22.16 E-value=65 Score=29.48 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHhc----ccCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 020372 10 EVSALFS----IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 56 (327)
Q Consensus 10 dL~~~F~----~~G~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai~~l~ 56 (327)
||+.+|. .+|.|+++.+...+....+..+++.|.+.++|.+++..+.
T Consensus 202 dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 202 DLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp CCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred CHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHH
Confidence 5666663 4567888877555444456689999999999999998874
No 432
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=21.06 E-value=50 Score=16.03 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=9.0
Q ss_pred HHHHHHhcccC
Q 020372 9 AEVSALFSIYG 19 (327)
Q Consensus 9 ~dL~~~F~~~G 19 (327)
.+++++|.++|
T Consensus 15 kqvkklfkkwg 25 (26)
T 1ytr_A 15 KQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHcC
Confidence 57788999887
No 433
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.44 E-value=1.6e+02 Score=18.12 Aligned_cols=55 Identities=11% Similarity=-0.021 Sum_probs=43.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020372 241 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 302 (327)
Q Consensus 241 ~~~l~v~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~~~~G~afV~f~~~~~A~~A~~~ 302 (327)
..++.|.++...-....|.+.+.. ..|..+.+-. ..+.+.|.|.+.++...+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~------~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL------NEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS------SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc------cCCEEEEEECCHHHHHHHHHH
Confidence 457889999998889999999999 7888877633 345788888866677777776
No 434
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=20.20 E-value=91 Score=23.60 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=33.8
Q ss_pred CcCCCHHHHHHHhcc-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q 020372 3 PKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 52 (327)
Q Consensus 3 p~~~te~dL~~~F~~-~G-~i~~v~~~~~~~g~skG~afV~F~~~e~A~~Ai 52 (327)
+.+++..+|++.++. || +|..|..+...+|.- -|||.+....+|.+..
T Consensus 97 d~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvA 146 (152)
T 3iz5_X 97 DLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKK--KAYVKLTPDYDALDVA 146 (152)
T ss_dssp CSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSE--EEEEEECTTSCHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCce--EEEEEcCCCCcHHHHH
Confidence 556788888877755 45 478888776554422 4999999887777654
Done!