Query 020373
Match_columns 327
No_of_seqs 177 out of 1473
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 9.5E-66 2.1E-70 458.5 28.2 267 5-305 2-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 5.5E-64 1.2E-68 447.1 29.4 289 1-305 1-289 (300)
3 COG0667 Tas Predicted oxidored 100.0 1.6E-59 3.4E-64 433.5 29.2 268 6-304 1-312 (316)
4 KOG1575 Voltage-gated shaker-l 100.0 1E-58 2.3E-63 420.6 27.4 280 3-311 9-335 (336)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.3E-57 5.1E-62 411.6 29.9 253 19-304 2-255 (267)
6 PRK10625 tas putative aldo-ket 100.0 1.5E-56 3.2E-61 420.8 29.8 287 6-305 1-343 (346)
7 TIGR01293 Kv_beta voltage-depe 100.0 2.1E-56 4.6E-61 415.0 28.4 263 8-299 1-316 (317)
8 PRK09912 L-glyceraldehyde 3-ph 100.0 3.8E-56 8.1E-61 417.7 29.8 271 4-302 11-334 (346)
9 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.6E-55 3.5E-60 400.9 29.6 261 7-304 5-265 (275)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 4E-54 8.8E-59 394.1 29.2 263 8-299 1-285 (285)
11 PLN02587 L-galactose dehydroge 100.0 4.3E-54 9.4E-59 399.1 28.7 269 8-302 1-301 (314)
12 PRK10376 putative oxidoreducta 100.0 6.1E-52 1.3E-56 380.4 29.5 257 8-302 9-289 (290)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 1E-52 2.3E-57 384.3 23.4 253 22-300 1-282 (283)
14 COG4989 Predicted oxidoreducta 100.0 8.3E-51 1.8E-55 348.1 19.9 268 6-302 1-294 (298)
15 PRK14863 bifunctional regulato 100.0 2E-50 4.4E-55 370.0 21.2 249 18-297 3-278 (292)
16 COG1453 Predicted oxidoreducta 100.0 1.6E-46 3.4E-51 338.6 20.7 265 6-303 1-287 (391)
17 KOG1576 Predicted oxidoreducta 100.0 6.6E-46 1.4E-50 320.2 20.6 280 4-310 20-332 (342)
18 KOG3023 Glutamate-cysteine lig 98.7 1.2E-07 2.5E-12 82.0 8.6 171 54-224 46-230 (285)
19 TIGR00190 thiC thiamine biosyn 89.6 20 0.00043 34.3 16.8 136 32-219 74-221 (423)
20 PLN02489 homocysteine S-methyl 87.8 24 0.00053 33.1 16.8 218 33-285 53-332 (335)
21 PRK08609 hypothetical protein; 87.1 36 0.00079 34.4 16.4 182 37-254 351-552 (570)
22 PRK13352 thiamine biosynthesis 86.3 32 0.0007 33.0 16.6 140 32-223 74-228 (431)
23 PRK08392 hypothetical protein; 85.7 23 0.0005 30.8 15.6 182 37-255 16-209 (215)
24 PRK10558 alpha-dehydro-beta-de 84.6 7.8 0.00017 34.9 9.2 101 157-286 10-115 (256)
25 PRK10128 2-keto-3-deoxy-L-rham 82.2 18 0.00039 32.8 10.5 101 157-286 9-114 (267)
26 PF07021 MetW: Methionine bios 80.2 17 0.00037 31.2 9.0 73 153-225 91-170 (193)
27 TIGR03239 GarL 2-dehydro-3-deo 78.4 22 0.00049 31.8 9.8 99 159-286 5-108 (249)
28 cd01973 Nitrogenase_VFe_beta_l 76.3 65 0.0014 31.6 13.2 117 53-190 63-191 (454)
29 COG0159 TrpA Tryptophan syntha 75.0 46 0.001 30.1 10.7 124 149-285 77-228 (265)
30 cd03319 L-Ala-DL-Glu_epimerase 74.5 71 0.0015 29.4 16.6 150 33-224 134-289 (316)
31 PRK07945 hypothetical protein; 73.0 83 0.0018 29.5 19.3 23 35-57 111-133 (335)
32 cd01965 Nitrogenase_MoFe_beta_ 72.7 56 0.0012 31.6 11.7 115 56-191 61-186 (428)
33 COG1748 LYS9 Saccharopine dehy 72.2 19 0.00042 34.4 8.1 79 35-126 79-159 (389)
34 TIGR00381 cdhD CO dehydrogenas 71.1 92 0.002 29.8 12.1 108 97-225 128-251 (389)
35 TIGR02311 HpaI 2,4-dihydroxyhe 70.1 51 0.0011 29.5 10.0 100 157-286 3-108 (249)
36 COG0635 HemN Coproporphyrinoge 69.6 39 0.00084 32.8 9.7 76 92-176 199-276 (416)
37 PRK00912 ribonuclease P protei 69.4 80 0.0017 27.8 11.9 89 158-256 96-203 (237)
38 cd00423 Pterin_binding Pterin 68.8 85 0.0018 28.1 11.2 108 94-223 21-129 (258)
39 cd00739 DHPS DHPS subgroup of 68.0 92 0.002 28.0 11.5 106 95-222 22-128 (257)
40 TIGR02026 BchE magnesium-proto 67.1 77 0.0017 31.4 11.5 127 146-283 220-361 (497)
41 cd03316 MR_like Mandelate race 66.5 1.1E+02 0.0025 28.5 16.4 148 33-221 139-298 (357)
42 PRK13796 GTPase YqeH; Provisio 65.0 1.3E+02 0.0028 28.6 12.1 121 32-183 54-181 (365)
43 TIGR00216 ispH_lytB (E)-4-hydr 63.9 43 0.00093 30.6 8.2 69 202-281 198-273 (280)
44 PF00809 Pterin_bind: Pterin b 63.2 85 0.0018 27.1 9.8 69 151-223 57-125 (210)
45 PRK07535 methyltetrahydrofolat 59.8 1.1E+02 0.0024 27.6 10.1 102 95-222 23-124 (261)
46 COG2040 MHT1 Homocysteine/sele 59.7 1.4E+02 0.0031 27.3 13.6 217 33-285 41-297 (300)
47 PRK12360 4-hydroxy-3-methylbut 59.7 65 0.0014 29.4 8.6 69 202-281 199-274 (281)
48 cd03174 DRE_TIM_metallolyase D 59.0 53 0.0012 29.1 8.1 103 94-221 16-135 (265)
49 TIGR02932 vnfK_nitrog V-contai 59.0 1.9E+02 0.004 28.4 13.2 119 53-191 66-196 (457)
50 COG1140 NarY Nitrate reductase 58.1 7.2 0.00016 36.8 2.2 53 163-216 263-317 (513)
51 TIGR00735 hisF imidazoleglycer 58.1 1.4E+02 0.003 26.6 11.6 64 154-217 188-253 (254)
52 TIGR01278 DPOR_BchB light-inde 57.8 1.6E+02 0.0035 29.3 11.9 143 57-224 66-243 (511)
53 cd03322 rpsA The starvation se 57.1 1.7E+02 0.0038 27.5 15.1 145 33-223 126-274 (361)
54 PRK04452 acetyl-CoA decarbonyl 57.1 1.6E+02 0.0035 27.5 10.8 90 152-254 111-205 (319)
55 PF02679 ComA: (2R)-phospho-3- 57.0 36 0.00079 30.4 6.4 78 34-122 83-168 (244)
56 PRK07094 biotin synthase; Prov 56.4 1.3E+02 0.0028 27.7 10.4 120 149-283 71-203 (323)
57 PRK01045 ispH 4-hydroxy-3-meth 55.8 90 0.0019 28.8 8.9 68 203-281 201-275 (298)
58 cd00740 MeTr MeTr subgroup of 54.9 1.5E+02 0.0033 26.5 10.2 105 94-223 23-128 (252)
59 PRK05692 hydroxymethylglutaryl 54.4 74 0.0016 29.1 8.2 98 99-219 27-138 (287)
60 KOG1576 Predicted oxidoreducta 53.7 1.8E+02 0.0039 26.6 10.2 137 32-217 117-270 (342)
61 KOG1185 Thiamine pyrophosphate 53.4 2.1E+02 0.0045 28.4 11.1 45 37-88 40-84 (571)
62 PRK07534 methionine synthase I 52.7 2E+02 0.0044 26.9 21.1 228 33-303 43-314 (336)
63 PRK14017 galactonate dehydrata 52.2 86 0.0019 29.8 8.6 68 154-223 217-288 (382)
64 KOG0369 Pyruvate carboxylase [ 51.5 1.8E+02 0.0038 30.1 10.6 145 34-225 42-195 (1176)
65 cd00308 enolase_like Enolase-s 51.4 1.6E+02 0.0036 25.5 10.1 70 154-225 134-207 (229)
66 TIGR01228 hutU urocanate hydra 51.3 58 0.0012 32.1 7.1 128 40-198 108-259 (545)
67 TIGR01496 DHPS dihydropteroate 51.3 1.8E+02 0.004 26.0 10.8 63 153-221 63-125 (257)
68 PF03102 NeuB: NeuB family; I 51.3 92 0.002 27.8 8.1 115 32-178 53-184 (241)
69 KOG0259 Tyrosine aminotransfer 50.9 2.3E+02 0.0051 27.2 12.5 51 32-89 78-135 (447)
70 PRK15072 bifunctional D-altron 50.6 1.1E+02 0.0023 29.5 9.1 68 154-223 246-317 (404)
71 PRK05414 urocanate hydratase; 50.3 62 0.0014 32.0 7.1 128 40-198 117-268 (556)
72 PLN02746 hydroxymethylglutaryl 49.8 1.1E+02 0.0023 29.0 8.6 98 99-219 69-180 (347)
73 cd07944 DRE_TIM_HOA_like 4-hyd 49.5 1.3E+02 0.0028 27.1 8.9 110 93-220 16-128 (266)
74 cd01974 Nitrogenase_MoFe_beta 49.3 2.6E+02 0.0056 27.2 12.8 116 54-190 63-190 (435)
75 PF01964 ThiC: ThiC family; I 49.1 53 0.0011 31.5 6.3 140 32-223 73-224 (420)
76 PRK06361 hypothetical protein; 48.8 1.7E+02 0.0037 25.0 14.4 52 203-260 150-201 (212)
77 PRK10550 tRNA-dihydrouridine s 48.1 2.3E+02 0.005 26.2 13.2 132 32-189 72-219 (312)
78 COG0761 lytB 4-Hydroxy-3-methy 47.8 1.2E+02 0.0026 27.8 8.1 69 202-281 202-277 (294)
79 cd04740 DHOD_1B_like Dihydroor 47.5 2.2E+02 0.0047 25.8 14.3 164 32-215 99-286 (296)
80 PRK08645 bifunctional homocyst 47.5 3.3E+02 0.0071 27.9 18.5 212 32-285 40-286 (612)
81 TIGR00289 conserved hypothetic 46.8 1.9E+02 0.0041 25.4 9.2 103 204-320 75-194 (222)
82 PF11242 DUF2774: Protein of u 46.6 29 0.00063 23.8 3.1 23 240-262 15-37 (63)
83 PRK05283 deoxyribose-phosphate 45.8 1.3E+02 0.0029 27.0 8.2 87 22-116 135-227 (257)
84 cd03327 MR_like_2 Mandelate ra 45.6 92 0.002 29.1 7.6 65 154-220 211-279 (341)
85 TIGR02660 nifV_homocitr homoci 44.8 2.8E+02 0.006 26.3 11.6 92 100-219 25-131 (365)
86 PF02401 LYTB: LytB protein; 44.8 50 0.0011 30.2 5.4 106 164-281 155-274 (281)
87 PRK13602 putative ribosomal pr 44.8 49 0.0011 24.1 4.4 58 157-221 3-60 (82)
88 PRK13958 N-(5'-phosphoribosyl) 44.7 77 0.0017 27.4 6.4 33 164-198 51-84 (207)
89 TIGR00126 deoC deoxyribose-pho 44.5 83 0.0018 27.4 6.6 74 32-114 129-205 (211)
90 cd01822 Lysophospholipase_L1_l 43.7 79 0.0017 25.7 6.2 87 165-252 38-138 (177)
91 PRK08776 cystathionine gamma-s 43.2 2.7E+02 0.0059 26.7 10.6 74 151-225 110-186 (405)
92 PRK02910 light-independent pro 43.1 3.5E+02 0.0076 27.0 12.5 141 58-224 67-243 (519)
93 cd07939 DRE_TIM_NifV Streptomy 41.8 2.5E+02 0.0055 24.9 11.6 93 99-219 21-128 (259)
94 COG4626 Phage terminase-like p 41.7 95 0.0021 31.1 7.1 76 148-223 410-485 (546)
95 COG2200 Rtn c-di-GMP phosphodi 41.6 2.3E+02 0.005 25.2 9.3 130 61-220 69-212 (256)
96 cd03318 MLE Muconate Lactonizi 41.4 1.3E+02 0.0028 28.4 7.9 68 154-223 228-299 (365)
97 COG0626 MetC Cystathionine bet 41.0 1.1E+02 0.0023 29.6 7.2 80 150-230 112-194 (396)
98 PF04748 Polysacc_deac_2: Dive 40.8 2.3E+02 0.005 24.6 8.8 90 26-121 65-182 (213)
99 PRK02301 putative deoxyhypusin 40.7 2.3E+02 0.0051 26.3 9.1 51 35-89 43-94 (316)
100 PF01175 Urocanase: Urocanase; 40.7 76 0.0016 31.4 6.1 129 39-198 106-258 (546)
101 COG3653 N-acyl-D-aspartate/D-g 40.2 3.7E+02 0.008 26.4 15.3 78 38-124 185-278 (579)
102 TIGR03700 mena_SCO4494 putativ 40.2 3.2E+02 0.0069 25.6 12.1 136 95-280 80-222 (351)
103 PRK06015 keto-hydroxyglutarate 39.3 85 0.0018 27.2 5.7 61 152-219 41-102 (201)
104 PLN02428 lipoic acid synthase 39.1 3.4E+02 0.0074 25.7 11.5 168 32-225 130-325 (349)
105 PRK04175 rpl7ae 50S ribosomal 39.0 1E+02 0.0022 24.3 5.7 63 151-219 16-78 (122)
106 cd03315 MLE_like Muconate lact 38.9 2.8E+02 0.0061 24.6 16.2 151 33-224 85-241 (265)
107 TIGR02931 anfK_nitrog Fe-only 38.8 3.9E+02 0.0084 26.2 13.5 117 54-191 70-199 (461)
108 PRK08195 4-hyroxy-2-oxovalerat 38.8 3.3E+02 0.0073 25.5 11.5 24 32-55 22-45 (337)
109 PRK10528 multifunctional acyl- 38.7 1E+02 0.0022 26.0 6.2 94 160-254 40-147 (191)
110 TIGR01928 menC_lowGC/arch o-su 38.7 1.2E+02 0.0027 28.1 7.2 71 152-224 210-284 (324)
111 PRK12581 oxaloacetate decarbox 38.5 4E+02 0.0087 26.3 14.7 114 33-176 103-216 (468)
112 PF01408 GFO_IDH_MocA: Oxidore 38.3 1.7E+02 0.0037 22.0 8.5 85 156-251 15-115 (120)
113 TIGR01182 eda Entner-Doudoroff 38.2 1E+02 0.0023 26.7 6.2 61 152-219 45-106 (204)
114 cd00405 PRAI Phosphoribosylant 38.1 2.5E+02 0.0054 23.8 10.9 25 154-178 88-112 (203)
115 cd01320 ADA Adenosine deaminas 38.0 3.2E+02 0.0069 25.0 16.8 126 150-297 172-304 (325)
116 PRK08446 coproporphyrinogen II 37.7 3.1E+02 0.0067 25.7 9.8 121 38-176 98-231 (350)
117 PF01081 Aldolase: KDPG and KH 37.2 1.1E+02 0.0023 26.4 6.0 102 150-283 19-120 (196)
118 PLN02363 phosphoribosylanthran 37.0 1.2E+02 0.0025 27.4 6.5 75 95-198 56-131 (256)
119 PF03102 NeuB: NeuB family; I 36.7 1.1E+02 0.0024 27.3 6.2 86 204-304 59-172 (241)
120 COG2874 FlaH Predicted ATPases 36.4 3E+02 0.0066 24.3 8.7 141 9-174 19-168 (235)
121 CHL00076 chlB photochlorophyll 36.3 4.5E+02 0.0098 26.2 12.6 62 58-126 67-128 (513)
122 COG0773 MurC UDP-N-acetylmuram 36.2 15 0.00032 35.9 0.6 26 245-270 113-141 (459)
123 cd07943 DRE_TIM_HOA 4-hydroxy- 35.3 3.2E+02 0.007 24.3 9.4 108 93-220 18-131 (263)
124 cd03323 D-glucarate_dehydratas 35.3 1.5E+02 0.0034 28.3 7.5 68 154-223 250-321 (395)
125 PRK13361 molybdenum cofactor b 35.2 3.7E+02 0.008 24.9 17.5 106 32-165 45-154 (329)
126 COG1358 RPL8A Ribosomal protei 35.0 1.3E+02 0.0027 23.6 5.6 64 150-219 12-75 (116)
127 cd04734 OYE_like_3_FMN Old yel 34.7 3.9E+02 0.0084 25.0 13.8 38 154-191 274-312 (343)
128 PRK00087 4-hydroxy-3-methylbut 34.5 1.9E+02 0.0041 29.8 8.4 68 202-280 196-270 (647)
129 COG1149 MinD superfamily P-loo 34.1 57 0.0012 29.6 3.9 49 175-225 202-250 (284)
130 PRK01018 50S ribosomal protein 33.9 1.2E+02 0.0025 22.9 5.2 61 153-220 4-64 (99)
131 TIGR00290 MJ0570_dom MJ0570-re 33.9 3.3E+02 0.0071 23.9 9.4 104 204-320 75-195 (223)
132 PLN02444 HMP-P synthase 33.5 5.3E+02 0.011 26.2 16.4 134 32-219 234-379 (642)
133 TIGR03677 rpl7ae 50S ribosomal 33.4 1.7E+02 0.0037 22.8 6.1 64 150-219 11-74 (117)
134 PRK01222 N-(5'-phosphoribosyl) 33.3 1.4E+02 0.0029 25.9 6.2 33 164-198 53-86 (210)
135 TIGR03551 F420_cofH 7,8-dideme 33.2 2.7E+02 0.0059 26.0 8.7 124 148-283 70-216 (343)
136 COG2896 MoaA Molybdenum cofact 33.1 3.6E+02 0.0078 25.2 9.1 128 32-186 43-176 (322)
137 PF00682 HMGL-like: HMGL-like 32.9 3.3E+02 0.0071 23.6 11.1 140 99-285 15-176 (237)
138 PF01876 RNase_P_p30: RNase P 32.9 1.1E+02 0.0023 24.9 5.2 121 154-294 15-144 (150)
139 PF14871 GHL6: Hypothetical gl 32.9 44 0.00096 26.8 2.8 22 204-225 47-68 (132)
140 TIGR03471 HpnJ hopanoid biosyn 32.7 4.8E+02 0.01 25.5 11.3 123 146-283 225-361 (472)
141 cd04731 HisF The cyclase subun 32.3 3.4E+02 0.0075 23.7 11.5 140 18-189 70-218 (243)
142 TIGR02534 mucon_cyclo muconate 32.2 1.8E+02 0.004 27.4 7.4 68 154-223 227-298 (368)
143 PRK06740 histidinol-phosphatas 32.0 4.3E+02 0.0093 24.7 12.4 61 101-170 156-220 (331)
144 KOG0023 Alcohol dehydrogenase, 32.0 2.8E+02 0.006 26.1 8.0 146 4-215 172-322 (360)
145 COG0282 ackA Acetate kinase [E 31.7 3.5E+02 0.0075 26.0 8.8 121 158-283 164-291 (396)
146 PRK06552 keto-hydroxyglutarate 31.5 1.4E+02 0.0031 25.9 6.0 61 152-219 50-114 (213)
147 PF01081 Aldolase: KDPG and KH 30.9 1.3E+02 0.0028 25.9 5.5 59 154-219 47-106 (196)
148 PF07287 DUF1446: Protein of u 30.7 1.9E+02 0.0041 27.5 7.0 87 154-251 12-100 (362)
149 TIGR00321 dhys deoxyhypusine s 30.7 4.4E+02 0.0095 24.4 9.3 138 35-221 31-181 (301)
150 cd06543 GH18_PF-ChiA-like PF-C 30.6 4.3E+02 0.0093 24.2 16.0 172 23-225 72-264 (294)
151 PRK15408 autoinducer 2-binding 30.6 4.4E+02 0.0096 24.4 10.9 76 79-182 22-97 (336)
152 COG1751 Uncharacterized conser 30.2 1.4E+02 0.0031 24.6 5.2 71 34-113 13-85 (186)
153 COG4943 Predicted signal trans 30.2 5.6E+02 0.012 25.5 10.4 127 62-220 342-477 (524)
154 PF11239 DUF3040: Protein of u 30.1 28 0.00061 25.3 1.1 25 287-311 2-26 (82)
155 COG1121 ZnuC ABC-type Mn/Zn tr 30.0 1.9E+02 0.0041 26.0 6.6 48 115-182 158-205 (254)
156 COG2102 Predicted ATPases of P 29.9 91 0.002 27.4 4.4 93 150-253 75-177 (223)
157 cd01821 Rhamnogalacturan_acety 29.6 2E+02 0.0044 24.0 6.6 88 165-252 36-149 (198)
158 PF05913 DUF871: Bacterial pro 29.4 1.1E+02 0.0025 28.9 5.4 197 33-283 12-235 (357)
159 COG2987 HutU Urocanate hydrata 29.3 1.1E+02 0.0024 29.9 5.1 49 150-198 219-268 (561)
160 COG0042 tRNA-dihydrouridine sy 29.2 4.7E+02 0.01 24.3 11.9 131 32-189 76-223 (323)
161 TIGR02080 O_succ_thio_ly O-suc 29.0 5E+02 0.011 24.6 10.0 73 151-224 101-176 (382)
162 TIGR02090 LEU1_arch isopropylm 29.0 4.2E+02 0.0091 25.0 9.2 91 100-218 24-129 (363)
163 PLN02540 methylenetetrahydrofo 28.9 6.3E+02 0.014 25.7 15.7 161 36-219 16-202 (565)
164 cd01968 Nitrogenase_NifE_I Nit 28.8 5.2E+02 0.011 24.7 14.2 114 53-190 63-187 (410)
165 PRK08247 cystathionine gamma-s 28.7 2.6E+02 0.0056 26.3 7.8 58 166-224 116-176 (366)
166 PF01053 Cys_Met_Meta_PP: Cys/ 28.6 1.3E+02 0.0028 28.9 5.6 75 150-225 104-182 (386)
167 COG1751 Uncharacterized conser 28.5 3.4E+02 0.0074 22.5 7.2 74 150-223 12-92 (186)
168 PRK15440 L-rhamnonate dehydrat 28.4 3E+02 0.0065 26.4 8.2 65 154-220 248-318 (394)
169 TIGR01579 MiaB-like-C MiaB-lik 28.4 3.4E+02 0.0073 26.1 8.6 126 145-283 164-313 (414)
170 COG2949 SanA Uncharacterized m 27.9 2.8E+02 0.006 24.3 6.8 44 150-193 78-128 (235)
171 cd02801 DUS_like_FMN Dihydrour 27.7 3.9E+02 0.0085 22.9 10.1 128 33-189 65-208 (231)
172 PF01118 Semialdhyde_dh: Semia 27.6 80 0.0017 24.4 3.5 28 32-59 74-101 (121)
173 cd07948 DRE_TIM_HCS Saccharomy 27.6 4.5E+02 0.0098 23.6 9.9 99 94-221 19-132 (262)
174 TIGR01862 N2-ase-Ialpha nitrog 27.5 5.8E+02 0.013 24.8 10.2 146 55-223 96-271 (443)
175 PRK10415 tRNA-dihydrouridine s 27.4 5E+02 0.011 24.0 12.6 133 32-196 74-224 (321)
176 PF06506 PrpR_N: Propionate ca 27.2 1.9E+02 0.0042 24.0 6.0 66 149-219 62-130 (176)
177 cd07943 DRE_TIM_HOA 4-hydroxy- 27.1 4.5E+02 0.0098 23.4 14.5 24 32-55 19-42 (263)
178 PF13380 CoA_binding_2: CoA bi 27.1 2.9E+02 0.0064 21.2 6.6 18 203-220 91-108 (116)
179 PF01248 Ribosomal_L7Ae: Ribos 26.7 1.5E+02 0.0033 21.7 4.7 64 152-221 2-65 (95)
180 PF01408 GFO_IDH_MocA: Oxidore 26.7 2.1E+02 0.0046 21.5 5.7 61 157-219 54-118 (120)
181 PRK09058 coproporphyrinogen II 26.3 5.1E+02 0.011 25.3 9.5 60 164-223 113-182 (449)
182 COG1104 NifS Cysteine sulfinat 26.2 1.5E+02 0.0032 28.4 5.5 71 150-221 101-178 (386)
183 PRK10799 metal-binding protein 26.1 1E+02 0.0023 27.4 4.3 32 41-73 200-231 (247)
184 cd03321 mandelate_racemase Man 26.1 5.5E+02 0.012 24.0 13.7 64 154-219 226-293 (355)
185 PRK05660 HemN family oxidoredu 26.0 5.7E+02 0.012 24.2 11.3 111 20-175 118-242 (378)
186 COG1099 Predicted metal-depend 26.0 4.7E+02 0.01 23.2 9.0 91 158-256 57-161 (254)
187 COG4669 EscJ Type III secretor 25.9 4.1E+02 0.009 23.7 7.7 78 32-111 28-122 (246)
188 PRK13561 putative diguanylate 25.7 7.2E+02 0.016 25.3 11.1 116 83-220 486-610 (651)
189 PRK06015 keto-hydroxyglutarate 25.7 4.4E+02 0.0095 22.8 9.1 102 149-283 14-116 (201)
190 TIGR02026 BchE magnesium-proto 25.6 6.6E+02 0.014 24.8 11.6 67 149-215 321-392 (497)
191 COG4130 Predicted sugar epimer 25.6 3.1E+02 0.0067 24.2 6.7 74 176-250 51-136 (272)
192 cd00248 Mth938-like Mth938-lik 25.5 2E+02 0.0043 22.0 5.2 54 171-224 36-89 (109)
193 PRK00164 moaA molybdenum cofac 25.3 5.4E+02 0.012 23.6 17.6 106 32-165 49-158 (331)
194 TIGR01502 B_methylAsp_ase meth 25.2 2.7E+02 0.0058 27.0 7.2 70 152-223 279-357 (408)
195 COG1038 PycA Pyruvate carboxyl 25.0 8.8E+02 0.019 26.0 11.8 144 35-225 17-169 (1149)
196 COG2069 CdhD CO dehydrogenase/ 24.9 5.6E+02 0.012 23.8 11.6 101 104-225 157-262 (403)
197 PRK11858 aksA trans-homoaconit 24.8 6.1E+02 0.013 24.1 11.4 97 99-223 27-138 (378)
198 PRK07328 histidinol-phosphatas 24.8 5E+02 0.011 23.1 15.4 120 36-170 19-159 (269)
199 COG2159 Predicted metal-depend 24.7 5.1E+02 0.011 23.7 8.7 93 107-224 55-167 (293)
200 PRK07811 cystathionine gamma-s 24.6 5.9E+02 0.013 24.1 9.5 50 174-224 134-186 (388)
201 cd01966 Nitrogenase_NifN_1 Nit 24.4 3.8E+02 0.0082 25.9 8.1 114 56-190 61-187 (417)
202 cd08568 GDPD_TmGDE_like Glycer 24.4 3.9E+02 0.0084 23.0 7.6 31 157-187 109-139 (226)
203 COG1168 MalY Bifunctional PLP- 24.4 1.3E+02 0.0027 28.8 4.6 76 33-124 39-116 (388)
204 cd00959 DeoC 2-deoxyribose-5-p 24.1 2.2E+02 0.0048 24.3 5.9 71 33-112 129-202 (203)
205 PRK13803 bifunctional phosphor 24.1 4.8E+02 0.01 26.7 9.1 88 108-218 20-108 (610)
206 TIGR02637 RhaS rhamnose ABC tr 24.0 2.9E+02 0.0064 24.6 7.0 19 34-52 67-85 (302)
207 cd01320 ADA Adenosine deaminas 23.9 5.6E+02 0.012 23.4 9.7 112 94-221 66-193 (325)
208 cd01971 Nitrogenase_VnfN_like 23.9 6.6E+02 0.014 24.2 10.1 111 56-191 66-190 (427)
209 COG5310 Homospermidine synthas 23.9 3.5E+02 0.0076 25.5 7.2 74 39-126 51-125 (481)
210 TIGR03822 AblA_like_2 lysine-2 23.7 5.9E+02 0.013 23.6 10.4 74 150-225 152-238 (321)
211 PRK13347 coproporphyrinogen II 23.7 6.9E+02 0.015 24.3 13.4 59 165-223 103-171 (453)
212 PRK00507 deoxyribose-phosphate 23.6 3.2E+02 0.007 23.9 6.8 73 32-114 133-209 (221)
213 PRK00805 putative deoxyhypusin 23.5 6.2E+02 0.013 23.7 10.1 48 35-89 32-83 (329)
214 COG1831 Predicted metal-depend 23.5 3.1E+02 0.0066 25.0 6.6 66 150-215 106-185 (285)
215 PF13378 MR_MLE_C: Enolase C-t 23.1 1.2E+02 0.0026 22.9 3.6 49 172-222 3-54 (111)
216 PF03851 UvdE: UV-endonuclease 23.0 3.7E+02 0.008 24.5 7.2 81 35-125 45-155 (275)
217 PRK14476 nitrogenase molybdenu 23.0 6.2E+02 0.013 24.8 9.4 114 56-190 72-198 (455)
218 TIGR01430 aden_deam adenosine 22.9 5.9E+02 0.013 23.3 17.5 212 37-298 74-304 (324)
219 TIGR01329 cysta_beta_ly_E cyst 22.9 3.6E+02 0.0079 25.5 7.6 73 151-224 96-171 (378)
220 PF00682 HMGL-like: HMGL-like 22.8 5E+02 0.011 22.4 9.4 166 32-225 11-194 (237)
221 cd05560 Xcc1710_like Xcc1710_l 22.8 2.2E+02 0.0048 21.8 5.0 53 171-224 37-89 (109)
222 cd02930 DCR_FMN 2,4-dienoyl-Co 22.7 6.4E+02 0.014 23.6 13.8 92 80-189 202-301 (353)
223 KOG1549 Cysteine desulfurase N 22.7 2.3E+02 0.0049 27.6 6.0 71 152-222 143-219 (428)
224 PRK06256 biotin synthase; Vali 22.6 6.1E+02 0.013 23.4 9.3 123 147-282 90-223 (336)
225 PF01784 NIF3: NIF3 (NGG1p int 22.4 48 0.001 29.4 1.4 53 18-71 168-234 (241)
226 PRK09061 D-glutamate deacylase 22.4 7.7E+02 0.017 24.5 11.4 102 37-165 171-276 (509)
227 PF00388 PI-PLC-X: Phosphatidy 22.2 68 0.0015 25.8 2.2 15 39-53 30-44 (146)
228 PRK02901 O-succinylbenzoate sy 22.1 3.8E+02 0.0081 25.0 7.4 69 154-224 173-242 (327)
229 TIGR00035 asp_race aspartate r 22.0 4.9E+02 0.011 22.6 7.8 82 97-188 17-99 (229)
230 COG3737 Uncharacterized conser 21.9 1.2E+02 0.0025 23.9 3.2 50 176-225 57-107 (127)
231 COG4992 ArgD Ornithine/acetylo 21.8 3.8E+02 0.0083 25.9 7.3 26 46-71 39-70 (404)
232 PRK12323 DNA polymerase III su 21.7 4.7E+02 0.01 27.3 8.3 68 96-186 106-175 (700)
233 PRK08208 coproporphyrinogen II 21.7 6.3E+02 0.014 24.4 9.1 113 20-175 152-274 (430)
234 TIGR00737 nifR3_yhdG putative 21.5 6.4E+02 0.014 23.2 13.0 129 32-189 72-217 (319)
235 PRK09058 coproporphyrinogen II 21.5 7.6E+02 0.016 24.0 11.2 77 90-176 223-304 (449)
236 PRK08574 cystathionine gamma-s 21.5 2.6E+02 0.0056 26.6 6.3 70 152-224 104-177 (385)
237 COG1879 RbsB ABC-type sugar tr 21.4 6.1E+02 0.013 22.9 13.4 24 32-55 100-125 (322)
238 cd00945 Aldolase_Class_I Class 21.3 4E+02 0.0086 21.9 6.9 78 34-116 64-147 (201)
239 cd03317 NAAAR N-acylamino acid 21.3 4.7E+02 0.01 24.4 8.0 68 154-223 217-288 (354)
240 PRK09140 2-dehydro-3-deoxy-6-p 21.3 3.2E+02 0.0068 23.6 6.3 25 257-281 97-121 (206)
241 PRK09454 ugpQ cytoplasmic glyc 21.1 5.7E+02 0.012 22.4 8.3 61 163-223 139-218 (249)
242 PF01904 DUF72: Protein of unk 21.1 5.6E+02 0.012 22.3 9.7 68 49-125 19-96 (230)
243 PRK07003 DNA polymerase III su 21.1 4.2E+02 0.0091 28.1 7.9 36 151-186 133-170 (830)
244 PRK00208 thiG thiazole synthas 21.1 6.1E+02 0.013 22.8 17.7 129 20-185 10-143 (250)
245 smart00642 Aamy Alpha-amylase 20.9 2.6E+02 0.0057 23.1 5.5 75 149-225 17-94 (166)
246 TIGR01182 eda Entner-Doudoroff 20.9 5.5E+02 0.012 22.2 9.8 98 150-283 19-120 (204)
247 PRK13015 3-dehydroquinate dehy 20.8 2.4E+02 0.0052 23.1 5.0 80 94-203 26-107 (146)
248 COG0673 MviM Predicted dehydro 20.7 5.3E+02 0.011 23.4 8.2 99 157-264 20-143 (342)
249 PF05378 Hydant_A_N: Hydantoin 20.6 1.3E+02 0.0029 25.2 3.7 32 141-173 124-155 (176)
250 PLN02389 biotin synthase 20.5 7.5E+02 0.016 23.6 11.7 105 32-165 116-227 (379)
251 cd00466 DHQase_II Dehydroquina 20.4 1.9E+02 0.0042 23.5 4.3 80 94-203 24-105 (140)
252 PRK14478 nitrogenase molybdenu 20.3 8.3E+02 0.018 24.0 10.0 113 54-190 97-220 (475)
253 TIGR03597 GTPase_YqeH ribosome 20.3 7.3E+02 0.016 23.3 11.3 122 32-184 48-176 (360)
254 PRK09413 IS2 repressor TnpA; R 20.1 2E+02 0.0043 22.3 4.4 40 33-72 14-54 (121)
255 KOG0173 20S proteasome, regula 20.1 82 0.0018 28.1 2.3 19 32-50 183-201 (271)
256 COG3623 SgaU Putative L-xylulo 20.0 2E+02 0.0043 25.7 4.6 72 13-89 65-155 (287)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=9.5e-66 Score=458.47 Aligned_cols=267 Identities=40% Similarity=0.737 Sum_probs=245.7
Q ss_pred CCCceecCCCCCCCcCCccccccCccCCChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceE
Q 020373 5 IQPTSALSSSSGHRNMPVIGLGCGVGKSNLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLF 84 (327)
Q Consensus 5 ~m~~~~L~~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~ 84 (327)
.+.+.+|++ | .+||.||||||+++ +.+...+.|.+|++.|+|+||||..||||+.+|+++++. |+ +|+++|
T Consensus 2 ~~~~~~l~~--g-~~iP~iGlGt~~~~-~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelF 72 (280)
T COG0656 2 MKTKVTLNN--G-VEIPAIGLGTWQIG-DDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELF 72 (280)
T ss_pred CCceeecCC--C-CcccCcceEeeecC-CchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeE
Confidence 456789999 7 88999999999974 223388999999999999999999999999999999984 77 999999
Q ss_pred EeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 020373 85 ITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLG 164 (327)
Q Consensus 85 I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 164 (327)
|+||+|..+.+++.+.+++++||+|||+||||||++|||.+. . .....++|++|++++++|
T Consensus 73 ittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~------------------~~~~~etw~alE~l~~~G 133 (280)
T COG0656 73 ITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K------------------YVVIEETWKALEELVDEG 133 (280)
T ss_pred EEeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c------------------CccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999653 1 011579999999999999
Q ss_pred CcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHH
Q 020373 165 LTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQI 244 (327)
Q Consensus 165 kir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~l 244 (327)
|||+||||||+..+++++++..++.|++||++||++.++.+++++|+++||.++|||||+. |. .++.++.+.+|
T Consensus 134 ~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~-----~l~~~~~l~~I 207 (280)
T COG0656 134 LIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GG-----KLLDNPVLAEI 207 (280)
T ss_pred CccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-cc-----ccccChHHHHH
Confidence 9999999999999999999999999999999999999998999999999999999999986 32 17888999999
Q ss_pred HHHhCCCHHHHHHHHHHhcCcEEEeCCCCHHHHHHhhcccccccCHHHHHHHHhhhccCCC
Q 020373 245 AEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQIAQRRLI 305 (327)
Q Consensus 245 a~~~g~s~aq~al~~~l~~~~~~i~g~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~~~~ 305 (327)
|++||.|++|++|+|++++|+++||.+++++|+++|++++++.||++|+++|+++....+.
T Consensus 208 a~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 208 AKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred HHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 9999999999999999999999999999999999999999999999999999999887544
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=5.5e-64 Score=447.14 Aligned_cols=289 Identities=47% Similarity=0.763 Sum_probs=259.0
Q ss_pred CCCCCCCceecCCCCCCCcCCccccccCccCCChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCC
Q 020373 1 MDNSIQPTSALSSSSGHRNMPVIGLGCGVGKSNLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSR 80 (327)
Q Consensus 1 ~~~~~m~~~~L~~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R 80 (327)
|+.+. +.+|++ | .+||.||||||+ .+..++.+.+..|++.|+||||||..|++|+-+|++|++.+.++.+ +|
T Consensus 1 M~~~~--~~~Ln~--G-~~mP~iGlGTw~--~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~R 72 (300)
T KOG1577|consen 1 MSSKT--TVKLNN--G-FKMPIIGLGTWQ--SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KR 72 (300)
T ss_pred CCccc--eEeccC--C-CccceeeeEecc--cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-ch
Confidence 55444 789998 9 999999999999 5678899999999999999999999999999999999999866655 99
Q ss_pred CceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHH
Q 020373 81 EQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEES 160 (327)
Q Consensus 81 ~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 160 (327)
+++||+||+|+.++.++.++.++++||++||+||+|||++|||....+ ..|. .......+...+..++|++||++
T Consensus 73 ediFiTSKlw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~---~~~~--~~~~~~~~~~~~~~~tW~amE~~ 147 (300)
T KOG1577|consen 73 EDIFITSKLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD---SFPK--DENGKVNYDDVDRIETWKAMEKL 147 (300)
T ss_pred hhheeeeccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC---CCCc--ccccccccccchHHHHHHHHHHH
Confidence 999999999999899999999999999999999999999999987633 0110 00011123345789999999999
Q ss_pred HHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHH
Q 020373 161 QRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEA 240 (327)
Q Consensus 161 ~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~ 240 (327)
+++|++|+||||||+..+|+++++.++++|+++|++++|++++.+++++|+++||.|.|||||+..+. +. .++.++.
T Consensus 148 ~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~ 224 (300)
T KOG1577|consen 148 VDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPV 224 (300)
T ss_pred HHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998333 22 6788999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcCcEEEeCCCCHHHHHHhhcccccccCHHHHHHHHhhhccCCC
Q 020373 241 LKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQIAQRRLI 305 (327)
Q Consensus 241 l~~la~~~g~s~aq~al~~~l~~~~~~i~g~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~~~~ 305 (327)
+.+||++|+.|++|++|||++++|++|||.++|++|++||+.++++.||++|++.|+......|.
T Consensus 225 l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 225 LKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 99999999999999999999999999999999999999999999999999999999988777665
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.6e-59 Score=433.48 Aligned_cols=268 Identities=30% Similarity=0.492 Sum_probs=238.5
Q ss_pred CCceecCCCCCCCcCCccccccCccCC-----ChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCC
Q 020373 6 QPTSALSSSSGHRNMPVIGLGCGVGKS-----NLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLGLV 77 (327)
Q Consensus 6 m~~~~L~~t~g~~~vs~lglG~~~~~~-----~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~~ 77 (327)
|+||+||+| | ++||+||||||.++. +.+++.++|++|+++|||+||||++|| ||+++|++|+.. +
T Consensus 1 m~~r~lG~~-g-l~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~-- 73 (316)
T COG0667 1 MKYRRLGRS-G-LKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G-- 73 (316)
T ss_pred CCceecCCC-C-ceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--
Confidence 789999998 9 999999999999983 233566799999999999999999999 899999999964 2
Q ss_pred CCCCceEEeecCCCC----------CCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCC
Q 020373 78 TSREQLFITSKLWCH----------NAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSP 147 (327)
Q Consensus 78 ~~R~~~~I~tK~~~~----------~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
.|++++|+||++.. +.++++|+++++.||+|||||||||||+|||+...+
T Consensus 74 -~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p------------------- 133 (316)
T COG0667 74 -RRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP------------------- 133 (316)
T ss_pred -CCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-------------------
Confidence 38999999999532 458999999999999999999999999999987443
Q ss_pred CCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch--HHHHHHHHhcCCEEEEeccCCC
Q 020373 148 LDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ--RKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 148 ~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~via~~~l~~ 225 (327)
.++++++|.+|+++||||+||+||++.+++.++++.+ .+++++|.+||++.++ .+++++|+++||++++|+||+.
T Consensus 134 --~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~ 210 (316)
T COG0667 134 --IEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS 210 (316)
T ss_pred --HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc
Confidence 5888999999999999999999999999999999987 6788999999999964 5589999999999999999998
Q ss_pred CCCCCCCCCc------------CC----------hHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhh
Q 020373 226 VGTRWGSNQV------------ME----------NEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNL 281 (327)
Q Consensus 226 ~G~l~~~~~~------------~~----------~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl 281 (327)
|+|++.... +. ...++++|+++|+|++|+||+|++++| +++|+|+++++||++|+
T Consensus 211 -G~Ltgk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~ 289 (316)
T COG0667 211 -GLLTGKYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENL 289 (316)
T ss_pred -cccCCCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHH
Confidence 999875332 00 144889999999999999999999998 79999999999999999
Q ss_pred cccccccCHHHHHHHHhhhccCC
Q 020373 282 GIFDWELTDDDYDKINQIAQRRL 304 (327)
Q Consensus 282 ~a~~~~Lt~~~~~~i~~~~~~~~ 304 (327)
++++..|++++++.|+......+
T Consensus 290 ~A~~~~L~~~~~~~l~~~~~~~~ 312 (316)
T COG0667 290 AALDIKLSEEELAALDEISAEEP 312 (316)
T ss_pred HHhcCCCCHHHHHHHHHHhhhcc
Confidence 99999999999999998876533
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1e-58 Score=420.58 Aligned_cols=280 Identities=29% Similarity=0.433 Sum_probs=252.1
Q ss_pred CCCCCceecCCCCCCCcCCccccccCccC-----CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhc
Q 020373 3 NSIQPTSALSSSSGHRNMPVIGLGCGVGK-----SNLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRL 74 (327)
Q Consensus 3 ~~~m~~~~L~~t~g~~~vs~lglG~~~~~-----~~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~ 74 (327)
...|+|+.||+. | ++||++|||||.+. .+++++.+++++|+|+|+|+||||++|| ||.++|++|++.
T Consensus 9 ~~~~~~~~lg~~-g-l~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~--- 83 (336)
T KOG1575|consen 9 ELGMLRRKLGNS-G-LKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR--- 83 (336)
T ss_pred hhcceeeeccCC-C-ceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---
Confidence 346999999997 9 99999999995432 4889999999999999999999999999 799999999986
Q ss_pred CCCCCCCceEEeecCCC-------CCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCC
Q 020373 75 GLVTSREQLFITSKLWC-------HNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSP 147 (327)
Q Consensus 75 ~~~~~R~~~~I~tK~~~-------~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
+. +|++++|+||++. ...+...+.+.++.||+|||++|||+||+||+|+..|
T Consensus 84 ~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p------------------- 142 (336)
T KOG1575|consen 84 GW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP------------------- 142 (336)
T ss_pred CC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-------------------
Confidence 44 8999999999953 3345678999999999999999999999999988765
Q ss_pred CCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch---HHHHHHHHhcCCEEEEeccCC
Q 020373 148 LDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ---RKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 148 ~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~via~~~l~ 224 (327)
.++++++|.+++++||||+||+|+++++++.++...++++++.+|++||++.++ .++++.|++.||++++||||+
T Consensus 143 --iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~ 220 (336)
T KOG1575|consen 143 --IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLG 220 (336)
T ss_pred --HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccc
Confidence 689999999999999999999999999999999999988899999999999885 569999999999999999999
Q ss_pred CCCCCCCCCCc-----------------CC----------hHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHH
Q 020373 225 AVGTRWGSNQV-----------------ME----------NEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPE 275 (327)
Q Consensus 225 ~~G~l~~~~~~-----------------~~----------~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~ 275 (327)
+ |+|+++... .. .+.+.++|+++|+|++|+||+|+++++ ++||||+++.+
T Consensus 221 ~-G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve 299 (336)
T KOG1575|consen 221 R-GLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIE 299 (336)
T ss_pred c-ceeccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHH
Confidence 8 999865321 00 145889999999999999999999998 89999999999
Q ss_pred HHHHhhcccccccCHHHHHHHHhhhccCCCCCcccc
Q 020373 276 RLKQNLGIFDWELTDDDYDKINQIAQRRLIPSDFLI 311 (327)
Q Consensus 276 ~l~enl~a~~~~Lt~~~~~~i~~~~~~~~~~~~~~~ 311 (327)
||+||++|+...||++++.+|+++.+.....++++.
T Consensus 300 ~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 300 QLKENIGALSVKLTPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHhhccccCcCCCCC
Confidence 999999999999999999999999999887777653
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.3e-57 Score=411.58 Aligned_cols=253 Identities=36% Similarity=0.603 Sum_probs=228.9
Q ss_pred cCCccccccCccCCChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhh
Q 020373 19 NMPVIGLGCGVGKSNLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDR 98 (327)
Q Consensus 19 ~vs~lglG~~~~~~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~ 98 (327)
+||.||||||++ +.+++.+++++|++.|||+||||+.||+|+.+|++|++. ++ +|+++||+||++..+.+++.
T Consensus 2 ~vs~lglGt~~~--~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~~~~ 74 (267)
T PRK11172 2 SIPAFGLGTFRL--KDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLAKDK 74 (267)
T ss_pred CCCCEeeEcccc--ChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCCHHH
Confidence 689999999985 457789999999999999999999999999999999864 54 79999999999776778899
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHH
Q 020373 99 VIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKK 178 (327)
Q Consensus 99 i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~ 178 (327)
+++++++||+|||+||||+|++|||++... ....++|++|++++++||||+||||||+.++
T Consensus 75 ~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~-------------------~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~ 135 (267)
T PRK11172 75 LIPSLKESLQKLRTDYVDLTLIHWPSPNDE-------------------VSVEEFMQALLEAKKQGLTREIGISNFTIAL 135 (267)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCCCCC-------------------CCHHHHHHHHHHHHHCCCCCEEEEccCCHHH
Confidence 999999999999999999999999854211 2357899999999999999999999999999
Q ss_pred HHHHHhhCCC-CCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHHHHH
Q 020373 179 IDTILTFATI-PPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSL 257 (327)
Q Consensus 179 l~~~~~~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~al 257 (327)
++++++.+.. ++.++|++||++.++.+++++|+++||++++|+||+. |.+ +..+.+.++|+++|+|++|+||
T Consensus 136 l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~------~~~~~l~~~a~~~~~s~aqval 208 (267)
T PRK11172 136 MKQAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKV------LKDPVIARIAAKHNATPAQVIL 208 (267)
T ss_pred HHHHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Ccc------cCCHHHHHHHHHhCCCHHHHHH
Confidence 9999887654 6789999999999888999999999999999999987 654 3357899999999999999999
Q ss_pred HHHHhcCcEEEeCCCCHHHHHHhhcccccccCHHHHHHHHhhhccCC
Q 020373 258 RWIVEQGVTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQIAQRRL 304 (327)
Q Consensus 258 ~~~l~~~~~~i~g~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~~~ 304 (327)
+|++++++++|+|+++++|+++|+++++++||++++++|+++.++.+
T Consensus 209 ~w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 209 AWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred HHHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 99999998999999999999999999999999999999999987643
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.5e-56 Score=420.84 Aligned_cols=287 Identities=25% Similarity=0.311 Sum_probs=236.3
Q ss_pred CCceecCCCCCCCcCCccccccCccC--CChHHHHHHHHHHHHcCCCEEeCCCCcC----------CHHHHHHHHHHHHh
Q 020373 6 QPTSALSSSSGHRNMPVIGLGCGVGK--SNLNALKLAVLEAIKLGYRHFDTAAIYG----------TEKALGEAIAEALR 73 (327)
Q Consensus 6 m~~~~L~~t~g~~~vs~lglG~~~~~--~~~~~~~~~l~~A~e~Gin~fDTA~~Yg----------sE~~lG~aL~~~~~ 73 (327)
|+|++||+| | ++||+||||||.++ .+.+++.++|+.|+++|||+||||+.|| ||+.+|++|+..
T Consensus 1 m~~r~lg~t-~-~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~-- 76 (346)
T PRK10625 1 MQYHRIPHS-S-LEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR-- 76 (346)
T ss_pred CCceecCCC-C-CccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc--
Confidence 789999999 9 99999999999987 3678899999999999999999999996 899999999853
Q ss_pred cCCCCCCCceEEeecCCCC------------CCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCC
Q 020373 74 LGLVTSREQLFITSKLWCH------------NAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPN 141 (327)
Q Consensus 74 ~~~~~~R~~~~I~tK~~~~------------~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~ 141 (327)
+ .|++++|+||++.. +.+++.+++++++||+|||+||||+|++|||+.........++ ..+
T Consensus 77 -~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~---~~~ 149 (346)
T PRK10625 77 -G---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGY---SWT 149 (346)
T ss_pred -C---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccccc---ccc
Confidence 2 69999999998531 3578999999999999999999999999999642100000000 000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhC---C-CCCcccccccCcccch--HHHHHHHHhcCC
Q 020373 142 KEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFA---T-IPPSINQVEMHPVWQQ--RKLREFCKVKGM 215 (327)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~l~~~~~~~gi 215 (327)
. +.......++|++|++|+++||||+||+|||+..++++++..+ . ..+..+|++||++.++ .+++++|+++||
T Consensus 150 ~-~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi 228 (346)
T PRK10625 150 D-SAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGV 228 (346)
T ss_pred c-ccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCC
Confidence 0 0001236899999999999999999999999999988776532 2 3567899999998875 579999999999
Q ss_pred EEEEeccCCCCCCCCCCCC-----------cCC-------------hHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEe
Q 020373 216 NVTAYSPLGAVGTRWGSNQ-----------VME-------------NEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVV 269 (327)
Q Consensus 216 ~via~~~l~~~G~l~~~~~-----------~~~-------------~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~ 269 (327)
++++|+||++ |+|++... .+. .+.+.++|+++|+|++|+||+|++++| +++|+
T Consensus 229 ~via~spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~ 307 (346)
T PRK10625 229 ELLAYSCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLL 307 (346)
T ss_pred eEEEeccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEe
Confidence 9999999998 98875320 111 256889999999999999999999999 46899
Q ss_pred CCCCHHHHHHhhcccccccCHHHHHHHHhhhccCCC
Q 020373 270 RSLNPERLKQNLGIFDWELTDDDYDKINQIAQRRLI 305 (327)
Q Consensus 270 g~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~~~~ 305 (327)
|+++++||++|+++++++|+++++++|+++.+....
T Consensus 308 G~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~~~~~ 343 (346)
T PRK10625 308 GATTMEQLKTNIESLHLTLSEEVLAEIEAVHQVYTY 343 (346)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999765443
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.1e-56 Score=414.97 Aligned_cols=263 Identities=27% Similarity=0.401 Sum_probs=229.0
Q ss_pred ceecCCCCCCCcCCccccccCc-cC--CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCC
Q 020373 8 TSALSSSSGHRNMPVIGLGCGV-GK--SNLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLGLVTSRE 81 (327)
Q Consensus 8 ~~~L~~t~g~~~vs~lglG~~~-~~--~~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~~~~R~ 81 (327)
||+||+| | ++||+||||||. ++ .+.+++.++|++|+++|||+||||++|| ||+++|++|+.. +. +|+
T Consensus 1 ~r~lg~t-g-~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~ 73 (317)
T TIGR01293 1 YRNLGKS-G-LRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRS 73 (317)
T ss_pred CcccCCC-C-CeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--Ccc
Confidence 5889998 9 999999999996 43 4678899999999999999999999998 899999999853 33 699
Q ss_pred ceEEeecCCCC-------CCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHH
Q 020373 82 QLFITSKLWCH-------NAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVW 154 (327)
Q Consensus 82 ~~~I~tK~~~~-------~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
+++|+||++.. +.+++.+++++++||+|||+||||+|++|||+... ..+++|
T Consensus 74 ~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~---------------------~~~e~~ 132 (317)
T TIGR01293 74 SYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNT---------------------PMEETV 132 (317)
T ss_pred cEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCC---------------------CHHHHH
Confidence 99999998422 35789999999999999999999999999996532 257899
Q ss_pred HHHHHHHHcCCcCeEEecCCChHHHHHHHhhCC----CCCcccccccCcccch---HHHHHHHHhcCCEEEEeccCCCCC
Q 020373 155 EAMEESQRLGLTKSIGLSNFSCKKIDTILTFAT----IPPSINQVEMHPVWQQ---RKLREFCKVKGMNVTAYSPLGAVG 227 (327)
Q Consensus 155 ~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~via~~~l~~~G 227 (327)
++|++|+++||||+||+|||+.++++++...+. ++++++|++||++.++ ..++++|+++||++++|+||++ |
T Consensus 133 ~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G 211 (317)
T TIGR01293 133 RAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-G 211 (317)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-c
Confidence 999999999999999999999999888765432 5788999999999875 3689999999999999999998 9
Q ss_pred CCCCCCCc------------C---------C--------hHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHH
Q 020373 228 TRWGSNQV------------M---------E--------NEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPER 276 (327)
Q Consensus 228 ~l~~~~~~------------~---------~--------~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~ 276 (327)
+|++.... + . .+.+.++|+++|+|++|+||+|++++| +++|+|+++++|
T Consensus 212 ~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~q 291 (317)
T TIGR01293 212 LVSGKYDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQ 291 (317)
T ss_pred ccCCCCCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHH
Confidence 88754210 0 0 146888999999999999999999997 579999999999
Q ss_pred HHHhhccccc--ccCHHHHHHHHhh
Q 020373 277 LKQNLGIFDW--ELTDDDYDKINQI 299 (327)
Q Consensus 277 l~enl~a~~~--~Lt~~~~~~i~~~ 299 (327)
+++|+++++. +||++++++|+++
T Consensus 292 l~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 292 LMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHhh
Confidence 9999999986 9999999999875
No 8
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.8e-56 Score=417.67 Aligned_cols=271 Identities=21% Similarity=0.374 Sum_probs=233.5
Q ss_pred CCCCceecCCCCCCCcCCccccccCc-cC--CChHHHHHHHHHHHHcCCCEEeCCCCcC-----CHHHHHHHHHHHHhcC
Q 020373 4 SIQPTSALSSSSGHRNMPVIGLGCGV-GK--SNLNALKLAVLEAIKLGYRHFDTAAIYG-----TEKALGEAIAEALRLG 75 (327)
Q Consensus 4 ~~m~~~~L~~t~g~~~vs~lglG~~~-~~--~~~~~~~~~l~~A~e~Gin~fDTA~~Yg-----sE~~lG~aL~~~~~~~ 75 (327)
..|+||+||+| | ++||+||||||. ++ .+.+++.++|++|++.|||+||||+.|| ||+.+|++|++.. +
T Consensus 11 ~~m~~r~lg~t-g-~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~--~ 86 (346)
T PRK09912 11 GQMQYRYCGKS-G-LRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF--A 86 (346)
T ss_pred CCcceeecCCC-C-cccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc--c
Confidence 46999999999 9 999999999996 54 3456789999999999999999999998 6999999998521 1
Q ss_pred CCCCCCceEEeecCCC--------CCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCC
Q 020373 76 LVTSREQLFITSKLWC--------HNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSP 147 (327)
Q Consensus 76 ~~~~R~~~~I~tK~~~--------~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
. .|++++|+||++. .+.+++.+++++++||+|||+||||+|++|||+...
T Consensus 87 ~--~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~-------------------- 144 (346)
T PRK09912 87 A--YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENT-------------------- 144 (346)
T ss_pred C--CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC--------------------
Confidence 1 5999999999742 134688999999999999999999999999996432
Q ss_pred CCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHh---hCCCCCcccccccCcccch---HHHHHHHHhcCCEEEEec
Q 020373 148 LDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILT---FATIPPSINQVEMHPVWQQ---RKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 148 ~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~via~~ 221 (327)
..+++|++|++|+++||||+||||||++++++++.+ ...+++.++|++||++++. .+++++|+++||++++|+
T Consensus 145 -~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~s 223 (346)
T PRK09912 145 -PMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFT 223 (346)
T ss_pred -CHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEeh
Confidence 258899999999999999999999999998876654 3456788999999999873 469999999999999999
Q ss_pred cCCCCCCCCCCCC--------c--------------CC------hHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCC
Q 020373 222 PLGAVGTRWGSNQ--------V--------------ME------NEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRS 271 (327)
Q Consensus 222 ~l~~~G~l~~~~~--------~--------------~~------~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~ 271 (327)
||++ |+|++... . .. .+.+.++|+++|+|++|+||+|++++| +++|+|+
T Consensus 224 pl~~-G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~ 302 (346)
T PRK09912 224 PLAQ-GLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGA 302 (346)
T ss_pred hhcC-ccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCC
Confidence 9998 99876320 0 00 156888999999999999999999998 7889999
Q ss_pred CCHHHHHHhhcccc-cccCHHHHHHHHhhhcc
Q 020373 272 LNPERLKQNLGIFD-WELTDDDYDKINQIAQR 302 (327)
Q Consensus 272 ~~~~~l~enl~a~~-~~Lt~~~~~~i~~~~~~ 302 (327)
++++||++|++++. ++|+++++++|+++.++
T Consensus 303 ~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 303 SRAEQLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred CCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 99999999999984 79999999999998755
No 9
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.6e-55 Score=400.88 Aligned_cols=261 Identities=37% Similarity=0.726 Sum_probs=234.1
Q ss_pred CceecCCCCCCCcCCccccccCccCCChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEe
Q 020373 7 PTSALSSSSGHRNMPVIGLGCGVGKSNLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFIT 86 (327)
Q Consensus 7 ~~~~L~~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~ 86 (327)
++.+|.+ | +.||.||||||++ +.+++.+++++|++.|+|+||||+.||+|+.+|++|++. ++ +|++++|+
T Consensus 5 ~~~~l~~--g-~~v~~lglG~~~~--~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i~ 74 (275)
T PRK11565 5 TVIKLQD--G-NVMPQLGLGVWQA--SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFIT 74 (275)
T ss_pred ceEEcCC--C-CccCCcceECccC--CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEEE
Confidence 3466854 9 9999999999984 578899999999999999999999999999999999864 44 69999999
Q ss_pred ecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 020373 87 SKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLT 166 (327)
Q Consensus 87 tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gki 166 (327)
||++.. +++.+++++++||+|||+||||+|++|||+...+ ...++|++|++|+++|||
T Consensus 75 tK~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~--------------------~~~~~~~~l~~l~~~G~i 132 (275)
T PRK11565 75 TKLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAID--------------------HYVEAWKGMIELQKEGLI 132 (275)
T ss_pred EEecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcC--------------------cHHHHHHHHHHHHHcCCe
Confidence 998643 4688999999999999999999999999964211 257899999999999999
Q ss_pred CeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHH
Q 020373 167 KSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAE 246 (327)
Q Consensus 167 r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~ 246 (327)
|+||||||++++++++++.+++.|.++|++|+++.++.+++++|+++||.+++|+|+++ |. ...+..+.+.++|+
T Consensus 133 r~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~----~~~~~~~~l~~ia~ 207 (275)
T PRK11565 133 KSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG----KGVFDQKVIRDLAD 207 (275)
T ss_pred eEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC----cccccCHHHHHHHH
Confidence 99999999999999999878888899999999998888899999999999999999986 53 12345688999999
Q ss_pred HhCCCHHHHHHHHHHhcCcEEEeCCCCHHHHHHhhcccccccCHHHHHHHHhhhccCC
Q 020373 247 AHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQIAQRRL 304 (327)
Q Consensus 247 ~~g~s~aq~al~~~l~~~~~~i~g~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~~~ 304 (327)
++|+|++|+||+|+++++.++|+|+++++|+++|+++++++|+++++++|+++...++
T Consensus 208 ~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 208 KYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred HhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 9999999999999999998899999999999999999999999999999999977654
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=4e-54 Score=394.06 Aligned_cols=263 Identities=38% Similarity=0.630 Sum_probs=236.7
Q ss_pred ceecCCCCCCCcCCccccccCccCC---ChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCC
Q 020373 8 TSALSSSSGHRNMPVIGLGCGVGKS---NLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLGLVTSRE 81 (327)
Q Consensus 8 ~~~L~~t~g~~~vs~lglG~~~~~~---~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~~~~R~ 81 (327)
|++||+| | +.||+|||||+.++. +.+++.++++.|++.|||+||||+.|| +|+.+|++|+.. + .|+
T Consensus 1 ~r~lg~t-g-~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~ 72 (285)
T cd06660 1 YRTLGKT-G-LKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PRE 72 (285)
T ss_pred CcccCCC-C-ceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcC
Confidence 5889998 9 999999999999873 578999999999999999999999999 899999999964 1 399
Q ss_pred ceEEeecCCCCC-----CChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHH
Q 020373 82 QLFITSKLWCHN-----AHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEA 156 (327)
Q Consensus 82 ~~~I~tK~~~~~-----~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
+++|+||++... .+++.+++++++||++||+||||+|+||||+...+ ...++|++
T Consensus 73 ~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~--------------------~~~~~~~~ 132 (285)
T cd06660 73 EVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP--------------------DIEETLRA 132 (285)
T ss_pred cEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC--------------------CHHHHHHH
Confidence 999999997654 57899999999999999999999999999965321 26899999
Q ss_pred HHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchH--HHHHHHHhcCCEEEEeccCCCCCCCCCCCC
Q 020373 157 MEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQR--KLREFCKVKGMNVTAYSPLGAVGTRWGSNQ 234 (327)
Q Consensus 157 l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~l~~~~~~~gi~via~~~l~~~G~l~~~~~ 234 (327)
|++++++||||+||||||+.+.++++++.+..+|+++|++||++++.. +++++|+++||++++|+||++ |.+++...
T Consensus 133 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~ 211 (285)
T cd06660 133 LEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYL 211 (285)
T ss_pred HHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCC
Confidence 999999999999999999999999999987788999999999999874 499999999999999999998 88875433
Q ss_pred cCC-------hHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhcccccccCHHHHHHHHhh
Q 020373 235 VME-------NEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQI 299 (327)
Q Consensus 235 ~~~-------~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~Lt~~~~~~i~~~ 299 (327)
... ...+..++.+++++++|+|++|++++| .++|+|+++++|+++|+++..++|++++++.|+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 212 PGAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred CCCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 221 367889999999999999999999996 89999999999999999999889999999999863
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4.3e-54 Score=399.11 Aligned_cols=269 Identities=20% Similarity=0.299 Sum_probs=228.4
Q ss_pred ceecCCCCCCCcCCccccccCccC-----CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCC
Q 020373 8 TSALSSSSGHRNMPVIGLGCGVGK-----SNLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLGLVTS 79 (327)
Q Consensus 8 ~~~L~~t~g~~~vs~lglG~~~~~-----~~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~~~~ 79 (327)
||+||+| | ++||.||||||+++ .+.+++.+++++|++.|||+||||+.|| +|..+|++|+.. ++ +
T Consensus 1 ~r~lg~t-~-~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~ 73 (314)
T PLN02587 1 LRELGST-G-LKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--P 73 (314)
T ss_pred CCcCCCC-C-CcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--C
Confidence 6899999 9 99999999999875 4678899999999999999999999997 699999999864 33 7
Q ss_pred CCceEEeecCCC----CCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHH
Q 020373 80 REQLFITSKLWC----HNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWE 155 (327)
Q Consensus 80 R~~~~I~tK~~~----~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
|+++||+||++. .+.+++.+++++++||+|||+||||+|++|||+.... .....++|+
T Consensus 74 R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~------------------~~~~~~~~~ 135 (314)
T PLN02587 74 REKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL------------------DQIVNETIP 135 (314)
T ss_pred cceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch------------------hhhHHHHHH
Confidence 999999999864 2567899999999999999999999999999853211 012468999
Q ss_pred HHHHHHHcCCcCeEEecCCChHHHHHHHhhCC---CCCcccccccCcccch-HHHHHHHHhcCCEEEEeccCCCCCCCCC
Q 020373 156 AMEESQRLGLTKSIGLSNFSCKKIDTILTFAT---IPPSINQVEMHPVWQQ-RKLREFCKVKGMNVTAYSPLGAVGTRWG 231 (327)
Q Consensus 156 ~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~via~~~l~~~G~l~~ 231 (327)
+|++|+++||||+||+|||++++++.+.+... +++.++|+.|++..+. .+++++|+++||++++|+||++ |.|++
T Consensus 136 ~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~ 214 (314)
T PLN02587 136 ALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTE 214 (314)
T ss_pred HHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCC
Confidence 99999999999999999999998887765432 3455568888887653 5899999999999999999998 99886
Q ss_pred CCC-cC--C-------hHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhcccc----cccCHHHHHH
Q 020373 232 SNQ-VM--E-------NEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFD----WELTDDDYDK 295 (327)
Q Consensus 232 ~~~-~~--~-------~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~----~~Lt~~~~~~ 295 (327)
... .. . .+.+.++|+++|+|++|+||+|++++| +++|+|+++++|+++|+++++ .+|+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~ 294 (314)
T PLN02587 215 NGPPEWHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSE 294 (314)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHH
Confidence 421 11 0 134678999999999999999999999 578999999999999999976 3799999999
Q ss_pred HHhhhcc
Q 020373 296 INQIAQR 302 (327)
Q Consensus 296 i~~~~~~ 302 (327)
|+++...
T Consensus 295 l~~~~~~ 301 (314)
T PLN02587 295 VEAILAP 301 (314)
T ss_pred HHHhhcc
Confidence 9998753
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=6.1e-52 Score=380.44 Aligned_cols=257 Identities=23% Similarity=0.343 Sum_probs=222.0
Q ss_pred ceecCCCCCCCcCCccccccCccCC--------ChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCC
Q 020373 8 TSALSSSSGHRNMPVIGLGCGVGKS--------NLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLGL 76 (327)
Q Consensus 8 ~~~L~~t~g~~~vs~lglG~~~~~~--------~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~ 76 (327)
+++|+ | ++||+||||||+++. +.+++.++|+.|++.|||+||||+.|| +|+.+|++|+.
T Consensus 9 ~~~l~---g-~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~------ 78 (290)
T PRK10376 9 TFTLG---G-RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP------ 78 (290)
T ss_pred ceecC---C-eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc------
Confidence 45564 7 999999999998751 467889999999999999999999998 68999999962
Q ss_pred CCCCCceEEeecCCC---------CCCChhhHHHHHHHHHHHhCCCccceeEeecCCC-CCCCCchhhhccCCCCCCCCC
Q 020373 77 VTSREQLFITSKLWC---------HNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPIS-AKPTSEEEEVGMSLPNKEDLS 146 (327)
Q Consensus 77 ~~~R~~~~I~tK~~~---------~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~-~~~~~~~~~~~~~~~~~~~~~ 146 (327)
.|++++|+||++. .+.+++.+++++++||+|||+||||+|++|++.. ..+.
T Consensus 79 --~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~----------------- 139 (290)
T PRK10376 79 --YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPA----------------- 139 (290)
T ss_pred --CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCC-----------------
Confidence 6999999999842 3567899999999999999999999999998632 1110
Q ss_pred CCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch-HHHHHHHHhcCCEEEEeccCCC
Q 020373 147 PLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ-RKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 147 ~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~via~~~l~~ 225 (327)
.....++|++|++|+++||||+||||||++++++++.+.+ ++.++|++||++.+. .+++++|+++||++++|+||++
T Consensus 140 ~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g 217 (290)
T PRK10376 140 EGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG 217 (290)
T ss_pred CCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC
Confidence 1236789999999999999999999999999999998876 457889999998875 6799999999999999999974
Q ss_pred CCCCCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhcccccccCHHHHHHHHhhhcc
Q 020373 226 VGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQIAQR 302 (327)
Q Consensus 226 ~G~l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~~~ 302 (327)
+. ....+.+.++|+++|+|++|+||+|+++++ +++|+|+++++|+++|+++.+++|++++++.|+++.+.
T Consensus 218 -~~------~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 218 -FT------PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred -CC------hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 31 223578999999999999999999999874 78899999999999999999999999999999998653
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1e-52 Score=384.33 Aligned_cols=253 Identities=34% Similarity=0.626 Sum_probs=218.9
Q ss_pred ccccccCccC---CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCCceEEeecC-----C
Q 020373 22 VIGLGCGVGK---SNLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLGLVTSREQLFITSKL-----W 90 (327)
Q Consensus 22 ~lglG~~~~~---~~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~-----~ 90 (327)
+||||||+++ .+.+++.++++.|++.|||+||||+.|| +|+.+|++|++. +. +|++++|+||+ +
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGKP 75 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSST
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--ccccccccccccccccc
Confidence 5899999985 6889999999999999999999999993 899999999972 33 89999999999 5
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEE
Q 020373 91 CHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIG 170 (327)
Q Consensus 91 ~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iG 170 (327)
..+.+++.+++++++||++||+||||+|++|||+...+ ...++|++|++|+++|+||+||
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~--------------------~~~~~~~~l~~l~~~G~ir~iG 135 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED--------------------ALEEVWEALEELKKEGKIRHIG 135 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS--------------------HHHHHHHHHHHHHHTTSEEEEE
T ss_pred cccccccccccccccccccccccchhcccccccccccc--------------------ccchhhhhhhhccccccccccc
Confidence 66788999999999999999999999999999965432 2689999999999999999999
Q ss_pred ecCCChHHHHHHHhhCCCCCcccccccCccc--chHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCc-------------
Q 020373 171 LSNFSCKKIDTILTFATIPPSINQVEMHPVW--QQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQV------------- 235 (327)
Q Consensus 171 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~------------- 235 (327)
||||+++.++.+.....++|+++|++||++. ...+++++|+++||++++|+|+++ |.+++....
T Consensus 136 vs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~ 214 (283)
T PF00248_consen 136 VSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDA 214 (283)
T ss_dssp EES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchh
Confidence 9999999999998888899999999999993 358899999999999999999998 888743221
Q ss_pred -CChHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhcccccccCHHHHHHHHhhh
Q 020373 236 -MENEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQIA 300 (327)
Q Consensus 236 -~~~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~Lt~~~~~~i~~~~ 300 (327)
...+.+.++++++|+|++|+||+|+++++ .++|+|+++++|+++|+++++++||++++++|+++.
T Consensus 215 ~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 215 QELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp GGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 34578999999999999999999999765 899999999999999999999999999999999875
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=8.3e-51 Score=348.11 Aligned_cols=268 Identities=27% Similarity=0.413 Sum_probs=241.8
Q ss_pred CCceecCCCCCCCcCCccccccCccC---CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCC
Q 020373 6 QPTSALSSSSGHRNMPVIGLGCGVGK---SNLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLGLVTS 79 (327)
Q Consensus 6 m~~~~L~~t~g~~~vs~lglG~~~~~---~~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~~~~ 79 (327)
|++.+|++. | +++|++.+|+|++. .+.++....++.|+|.|||+||-|+.|| +|+++|.+|+... + -
T Consensus 1 m~rI~l~~~-~-~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p--~---l 73 (298)
T COG4989 1 MQRITLAPD-G-LEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAP--G---L 73 (298)
T ss_pred CceEEecCC-C-ccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcCh--h---h
Confidence 788999987 9 99999999999987 5667899999999999999999999999 7999999998542 3 6
Q ss_pred CCceEEeecCC------------CCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCC
Q 020373 80 REQLFITSKLW------------CHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSP 147 (327)
Q Consensus 80 R~~~~I~tK~~------------~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
|+++-|.||++ ..+.+.++|..|+|+||++|+|||+|+++||+||+.
T Consensus 74 RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL--------------------- 132 (298)
T COG4989 74 REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL--------------------- 132 (298)
T ss_pred hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc---------------------
Confidence 99999999995 246789999999999999999999999999999764
Q ss_pred CCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch---HHHHHHHHhcCCEEEEeccCC
Q 020373 148 LDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ---RKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 148 ~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~via~~~l~ 224 (327)
++.+++-+||..|++.||||++|||||++.+++-+.+....+.+.||++++++..+ .+.+++|+++.|.+++||||+
T Consensus 133 md~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~ 212 (298)
T COG4989 133 MDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLG 212 (298)
T ss_pred CCHHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccC
Confidence 45799999999999999999999999999999999998888899999999999875 679999999999999999999
Q ss_pred CCCCCCCCCCcC--ChHHHHHHHHHhC-CCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhcccccccCHHHHHHHHhh
Q 020373 225 AVGTRWGSNQVM--ENEALKQIAEAHG-KTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDWELTDDDYDKINQI 299 (327)
Q Consensus 225 ~~G~l~~~~~~~--~~~~l~~la~~~g-~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~Lt~~~~~~i~~~ 299 (327)
+ |.++...+.+ -.+++..+|.++| .|..+++++|++.+| ..+|+|+.+++++++.++++++.||.++|-+|-.+
T Consensus 213 g-G~~F~g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~A 291 (298)
T COG4989 213 G-GGLFLGDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTA 291 (298)
T ss_pred C-CccccCCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8 6554333333 2588999999999 799999999999999 88999999999999999999999999999999888
Q ss_pred hcc
Q 020373 300 AQR 302 (327)
Q Consensus 300 ~~~ 302 (327)
...
T Consensus 292 a~G 294 (298)
T COG4989 292 AIG 294 (298)
T ss_pred hcc
Confidence 644
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2e-50 Score=370.01 Aligned_cols=249 Identities=17% Similarity=0.183 Sum_probs=211.0
Q ss_pred CcCCccccccCccCC------------ChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCCceE
Q 020373 18 RNMPVIGLGCGVGKS------------NLNALKLAVLEAIKLGYRHFDTAAIYG-TEKALGEAIAEALRLGLVTSREQLF 84 (327)
Q Consensus 18 ~~vs~lglG~~~~~~------------~~~~~~~~l~~A~e~Gin~fDTA~~Yg-sE~~lG~aL~~~~~~~~~~~R~~~~ 84 (327)
++||+||||||.+|. +.+++.++|+.|++.|||+||||+.|| ||+.+|++|+.. .+++++
T Consensus 3 ~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~~~ 75 (292)
T PRK14863 3 SPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFRVT 75 (292)
T ss_pred CcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceEee
Confidence 899999999998862 568899999999999999999999999 899999999731 356789
Q ss_pred EeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 020373 85 ITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLG 164 (327)
Q Consensus 85 I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 164 (327)
|+||. .+.+++.+++++++||+|||+||||+|++|||+.... ....++|++|++|+++|
T Consensus 76 i~tk~--~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-------------------~~~~~~~~~l~~l~~~G 134 (292)
T PRK14863 76 LSTVR--ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFG-------------------PHGAALWERLQALKDQG 134 (292)
T ss_pred ccccc--ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC-------------------cchHHHHHHHHHHHHcC
Confidence 99985 3456899999999999999999999999999853110 01257899999999999
Q ss_pred CcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch---HHHHHHHHhcCCEEEEeccCCCCCCCCCCCCc----C-
Q 020373 165 LTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ---RKLREFCKVKGMNVTAYSPLGAVGTRWGSNQV----M- 236 (327)
Q Consensus 165 kir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~----~- 236 (327)
|||+||||||++++++.+.. ..+|+++|++||+++++ .+++++|+++||++++|+||++ |.|++.... +
T Consensus 135 kir~iGvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~ 211 (292)
T PRK14863 135 LFAKIGVSAHASDDPVGVAR--RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLK 211 (292)
T ss_pred CcceEeeeccCHHHHHHHHh--cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchh
Confidence 99999999999999888764 34788999999999985 3599999999999999999998 998754211 1
Q ss_pred ----ChHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhcccccccCHHHHHHHH
Q 020373 237 ----ENEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDWELTDDDYDKIN 297 (327)
Q Consensus 237 ----~~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~Lt~~~~~~i~ 297 (327)
....+.++++++++|++|+||+|++++| +++|+|+++++|+++|+++.+.+++++.+++|.
T Consensus 212 ~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 212 GASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 1244666788889999999999999998 678999999999999999988888887765554
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.6e-46 Score=338.59 Aligned_cols=265 Identities=22% Similarity=0.338 Sum_probs=226.1
Q ss_pred CCceecCCCCCCCcCCccccccCccCC------ChHHHHHHHHHHHHcCCCEEeCCCCc--C-CHHHHHHHHHHHHhcCC
Q 020373 6 QPTSALSSSSGHRNMPVIGLGCGVGKS------NLNALKLAVLEAIKLGYRHFDTAAIY--G-TEKALGEAIAEALRLGL 76 (327)
Q Consensus 6 m~~~~L~~t~g~~~vs~lglG~~~~~~------~~~~~~~~l~~A~e~Gin~fDTA~~Y--g-sE~~lG~aL~~~~~~~~ 76 (327)
|.||++++| | .++|.+|||||++.. +.+.+.++|++|++.||||||||..| | ||..+|+||++.
T Consensus 1 Mlyr~~~k~-g-~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~----- 73 (391)
T COG1453 1 MLYRKFPKT-G-DELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG----- 73 (391)
T ss_pred CchhhcCCC-C-cccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-----
Confidence 889999999 9 999999999999973 78899999999999999999999999 6 899999999975
Q ss_pred CCCCCceEEeecCCC-CCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHH
Q 020373 77 VTSREQLFITSKLWC-HNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWE 155 (327)
Q Consensus 77 ~~~R~~~~I~tK~~~-~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
.|++|+++||+.. .-.+++.+++-++++|++||+||+|+|+||...... +......+.++
T Consensus 74 --~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~-----------------~~k~~~~g~~d 134 (391)
T COG1453 74 --YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET-----------------WEKIERLGVFD 134 (391)
T ss_pred --ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH-----------------HHHHHccChHH
Confidence 8999999999953 234578899999999999999999999999874311 11111234789
Q ss_pred HHHHHHHcCCcCeEEecCCC-hHHHHHHHhhCCCCCcccccccCcccch----HHHHHHHHhcCCEEEEeccCCCCCCCC
Q 020373 156 AMEESQRLGLTKSIGLSNFS-CKKIDTILTFATIPPSINQVEMHPVWQQ----RKLREFCKVKGMNVTAYSPLGAVGTRW 230 (327)
Q Consensus 156 ~l~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~l~~~~~~~gi~via~~~l~~~G~l~ 230 (327)
+++++|++||||++|+|.|+ .+.+.++++... .+++|+++|.++.. .+.+++|.++|++|+.++|+.+ |.+.
T Consensus 135 f~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~ 211 (391)
T COG1453 135 FLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLL 211 (391)
T ss_pred HHHHHHhcCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcc
Confidence 99999999999999999999 667888888765 55777777777664 3789999999999999999988 6553
Q ss_pred CCCCcCChHHHHHHHHHhC--CCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhccccc--c-cCHHHHHHHHhhhccC
Q 020373 231 GSNQVMENEALKQIAEAHG--KTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDW--E-LTDDDYDKINQIAQRR 303 (327)
Q Consensus 231 ~~~~~~~~~~l~~la~~~g--~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~--~-Lt~~~~~~i~~~~~~~ 303 (327)
.. -.+++.+++++.. .||+.+|+||++++| .++++|+++++|++||+..++. | ||++|.+.|.++.+.+
T Consensus 212 ~~----vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~ 287 (391)
T COG1453 212 YN----VPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIY 287 (391)
T ss_pred cC----CCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Confidence 21 2478999999975 699999999999999 7889999999999999998873 4 9999999888887653
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=6.6e-46 Score=320.22 Aligned_cols=280 Identities=20% Similarity=0.236 Sum_probs=226.6
Q ss_pred CCCCceecCCCCCCCcCCccccccCccC-----CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcC
Q 020373 4 SIQPTSALSSSSGHRNMPVIGLGCGVGK-----SNLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLG 75 (327)
Q Consensus 4 ~~m~~~~L~~t~g~~~vs~lglG~~~~~-----~~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~ 75 (327)
..|+||.||+| | ++||+||||++.++ .+.++....|..|++.|||+|||++.|| ||+.+|.++++.
T Consensus 20 rrmeyR~lg~t-g-l~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v---- 93 (342)
T KOG1576|consen 20 RRMEYRQLGST-G-LRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV---- 93 (342)
T ss_pred HHHHHhhcCCC-c-ceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC----
Confidence 35999999999 9 99999999998776 3567777777779999999999999999 899999999976
Q ss_pred CCCCCCceEEeecCCC--------CCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCC
Q 020373 76 LVTSREQLFITSKLWC--------HNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSP 147 (327)
Q Consensus 76 ~~~~R~~~~I~tK~~~--------~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
||+.+||+||+++ -|++++.+++++++||+||++||+|++|+|..+..... +
T Consensus 94 ---PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~l-----------------d 153 (342)
T KOG1576|consen 94 ---PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNL-----------------D 153 (342)
T ss_pred ---ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccc-----------------c
Confidence 9999999999964 36789999999999999999999999999987654321 2
Q ss_pred CCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCC--CCcccccccCcccch-HHHHHHHHhcCCEEEEeccCC
Q 020373 148 LDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATI--PPSINQVEMHPVWQQ-RKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 148 ~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~--~~~~~q~~~~~~~~~-~~l~~~~~~~gi~via~~~l~ 224 (327)
..+.+++.+|+++|++||||+|||+.+..+.+.++++...- +.+..-.+|++.+.. -..+++.+.+|++|++-++++
T Consensus 154 ~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asals 233 (342)
T KOG1576|consen 154 IVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALS 233 (342)
T ss_pred HHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHH
Confidence 34789999999999999999999999999999999876653 333334555554432 345677889999999999999
Q ss_pred CCCCCCCCCCc---CCh-------HHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhcccccccCHHH
Q 020373 225 AVGTRWGSNQV---MEN-------EALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDWELTDDD 292 (327)
Q Consensus 225 ~~G~l~~~~~~---~~~-------~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~~Lt~~~ 292 (327)
. |+|+..++. ... ....+.|++.|+..+.+|+.|.++.+ .++++|+++.++|+.|+++....||..+
T Consensus 234 m-gLLt~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~ 312 (342)
T KOG1576|consen 234 M-GLLTNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKH 312 (342)
T ss_pred H-HHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchh
Confidence 8 999853332 122 44556778889999999999999988 8899999999999999997655888844
Q ss_pred HHHHHhhhcc-C-CCCCccc
Q 020373 293 YDKINQIAQR-R-LIPSDFL 310 (327)
Q Consensus 293 ~~~i~~~~~~-~-~~~~~~~ 310 (327)
-++..++.++ . +..+..|
T Consensus 313 ~Qevl~~~r~~~~~~kn~~W 332 (342)
T KOG1576|consen 313 EQEVLRILREILKETKNEEW 332 (342)
T ss_pred HHHHHHHHHHHhhhhccCCC
Confidence 4444444333 3 3445555
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.65 E-value=1.2e-07 Score=81.99 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=108.2
Q ss_pred CCCCcCCHHHHHHHHHHHHhc--CCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhC----CCccce------eEee
Q 020373 54 TAAIYGTEKALGEAIAEALRL--GLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQ----MEYLDL------YLIH 121 (327)
Q Consensus 54 TA~~YgsE~~lG~aL~~~~~~--~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg----~d~iDl------~~lH 121 (327)
|++.-.+|++-+...+..-+. .+...++++-|..|.+-.++.-+.+....+.-++-+- +.-+|. -++|
T Consensus 46 t~~ete~eelh~cvq~~lnEssq~~~d~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~ 125 (285)
T KOG3023|consen 46 TGDETENEELHICVQVPLNESSQKLDDKQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPH 125 (285)
T ss_pred cCccchhHHHHHHHHHhhccccccCcccccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 444333677766655443221 1111577788888887666666666666665544321 111221 1222
Q ss_pred cCCCCCCCCchh-hhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcc
Q 020373 122 WPISAKPTSEEE-EVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPV 200 (327)
Q Consensus 122 ~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 200 (327)
.-.-..++-... ..+-...+..+..-....+.|+.||+++.+|||..||+|.|+..+|+++++.+.+.|.++|+++.-.
T Consensus 126 ~~~l~v~~lssv~ia~~sied~~n~~~e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~c 205 (285)
T KOG3023|consen 126 ITFLKVSGLSSVNIAYDSIEDIPNQEIESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQC 205 (285)
T ss_pred ceeecccCccchhccCChhhhcchhhHHHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeecccc
Confidence 111111110000 0000011111122234677999999999999999999999999999999999999999999999988
Q ss_pred cc-hHHHHHHHHhcCCEEEEeccCC
Q 020373 201 WQ-QRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 201 ~~-~~~l~~~~~~~gi~via~~~l~ 224 (327)
+. +.++.++|.+|+|.+..++--.
T Consensus 206 CvvPpdLqafa~~hdiQLltHsDP~ 230 (285)
T KOG3023|consen 206 CVVPPDLQAFADRHDIQLLTHSDPS 230 (285)
T ss_pred ccCCHHHHHHhhhcceeeeecCCch
Confidence 76 5899999999999999987653
No 19
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=89.55 E-value=20 Score=34.28 Aligned_cols=136 Identities=18% Similarity=0.223 Sum_probs=79.7
Q ss_pred CChHHHHHHHHHHHHcCCCEE-eCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeec--------C--CCCCCChhhHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHF-DTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSK--------L--WCHNAHHDRVI 100 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~f-DTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK--------~--~~~~~~~~~i~ 100 (327)
.+.+.-.+=++.|++.|...+ |-+ ..|.-..+-+.+-+ ...+-|.|= . ...+.+++.+.
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~---------~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~ 143 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILD---------AVPVPVGTVPIYQAAEKVHGAVEDMDEDDMF 143 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHH---------cCCCCccCccHHHHHHHhcCChhhCCHHHHH
Confidence 455555556899999998865 544 33443333333321 111222111 0 22456778888
Q ss_pred HHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHH
Q 020373 101 PAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKID 180 (327)
Q Consensus 101 ~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~ 180 (327)
+.+++-.+ |-+|.+-+|.- -..+.++.++++|+ -.|+-+-...-+.
T Consensus 144 ~~ie~qa~----dGVDfmTiH~G----------------------------i~~~~~~~~~~~~R--~~giVSRGGs~~~ 189 (423)
T TIGR00190 144 RAIEKQAK----DGVDFMTIHAG----------------------------VLLEYVERLKRSGR--ITGIVSRGGAILA 189 (423)
T ss_pred HHHHHHHH----hCCCEEEEccc----------------------------hhHHHHHHHHhCCC--ccCeecCcHHHHH
Confidence 88887766 56788999963 24677899999985 4566666655554
Q ss_pred HHHhhCCCCCcccccccCcccch-HHHHHHHHhcCCEEEE
Q 020373 181 TILTFATIPPSINQVEMHPVWQQ-RKLREFCKVKGMNVTA 219 (327)
Q Consensus 181 ~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~via 219 (327)
..+...+ .-||+..+ ..+++.|+++++.+--
T Consensus 190 ~WM~~~~--------~ENPlye~fD~lLeI~~~yDVtlSL 221 (423)
T TIGR00190 190 AWMLHHH--------KENPLYKNFDYILEIAKEYDVTLSL 221 (423)
T ss_pred HHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeec
Confidence 4443222 22344433 5677778888777654
No 20
>PLN02489 homocysteine S-methyltransferase
Probab=87.75 E-value=24 Score=33.07 Aligned_cols=218 Identities=12% Similarity=0.107 Sum_probs=115.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCC--------------HHHHHHHHH---HHHhcCC-------------CCCCCc
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYGT--------------EKALGEAIA---EALRLGL-------------VTSREQ 82 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~Ygs--------------E~~lG~aL~---~~~~~~~-------------~~~R~~ 82 (327)
+++.+.++=+..+++|-+.+-|...-++ +++.-.+++ +...+-. ...+.+
T Consensus 53 ~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 132 (335)
T PLN02489 53 SPHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRP 132 (335)
T ss_pred CHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCC
Confidence 4455556556678999999988754322 112222221 1111000 001346
Q ss_pred eEEeecCCCCC----------------CChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCC
Q 020373 83 LFITSKLWCHN----------------AHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLS 146 (327)
Q Consensus 83 ~~I~tK~~~~~----------------~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
++|+.-+++.. .+.+.+.+....-++.|--..+|++.+--..
T Consensus 133 ~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~---------------------- 190 (335)
T PLN02489 133 ILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIP---------------------- 190 (335)
T ss_pred cEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccC----------------------
Confidence 88888886421 3446677777777777744569999988531
Q ss_pred CCCHHHHHHHHHHHHHcC--CcCeEEecCCC------hHHHHHHHhhCC--CCCcccccccCcccchHHHHHHHHhc-CC
Q 020373 147 PLDYKGVWEAMEESQRLG--LTKSIGLSNFS------CKKIDTILTFAT--IPPSINQVEMHPVWQQRKLREFCKVK-GM 215 (327)
Q Consensus 147 ~~~~~~~~~~l~~l~~~G--kir~iGvs~~~------~~~l~~~~~~~~--~~~~~~q~~~~~~~~~~~l~~~~~~~-gi 215 (327)
...++..+++.+++.+ +--.+.++..+ ...++++++... ..+..+-+|+.....-..+++..+.+ .+
T Consensus 191 --~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~ 268 (335)
T PLN02489 191 --NKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSK 268 (335)
T ss_pred --ChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCC
Confidence 2567777777777665 44445555322 112333333221 23456666765221114455555544 66
Q ss_pred EEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCC---HHHHHHHHHHhcCcEEEeCC--CCHHHHHHhhcccc
Q 020373 216 NVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKT---VAQVSLRWIVEQGVTVVVRS--LNPERLKQNLGIFD 285 (327)
Q Consensus 216 ~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s---~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 285 (327)
.+++|-- + |..+....- .....++.+ .++.+.+|.- .|+.+|=|+ .+|+|+++.-+.++
T Consensus 269 pl~vyPN-a--G~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 269 PIVVYPN-S--GETYDGEAK-------EWVESTGVSDEDFVSYVNKWRD-AGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred cEEEECC-C--CCCCCCccC-------cccCCCCCCHHHHHHHHHHHHH-CCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 7776533 3 322211000 000012333 3567788864 577777666 79999988766543
No 21
>PRK08609 hypothetical protein; Provisional
Probab=87.12 E-value=36 Score=34.41 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCCEEeCCCCc-------C-CHHHHHHHHHHH--HhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHH
Q 020373 37 LKLAVLEAIKLGYRHFDTAAIY-------G-TEKALGEAIAEA--LRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKS 106 (327)
Q Consensus 37 ~~~~l~~A~e~Gin~fDTA~~Y-------g-sE~~lG~aL~~~--~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~S 106 (327)
..++++.|.+.|+++|=.++++ | +...+-..+++. +++.+ ..=++++..=+ ++.++....-.+..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~--~~i~Il~GiEv---~i~~~g~~d~~~~~ 425 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKY--PEIDILSGIEM---DILPDGSLDYDDEV 425 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEEEE---eecCCcchhhcHHH
Confidence 5669999999999998666664 1 222222222211 11111 11123333332 22222223333445
Q ss_pred HHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecC------CC--hHH
Q 020373 107 LSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSN------FS--CKK 178 (327)
Q Consensus 107 L~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~------~~--~~~ 178 (327)
|+. .||+ +.-+|++.. ....++++.+.++.+.|.+.-||=-. .. ...
T Consensus 426 L~~--~D~v-I~SvH~~~~----------------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d 480 (570)
T PRK08609 426 LAE--LDYV-IAAIHSSFS----------------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVN 480 (570)
T ss_pred HHh--hCEE-EEEeecCCC----------------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHH
Confidence 554 5666 677886521 12366788888888888877665222 11 233
Q ss_pred HHHHHhhCCCCCcccccccCccc--chHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHH
Q 020373 179 IDTILTFATIPPSINQVEMHPVW--QQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQ 254 (327)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~~--~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq 254 (327)
++++++.+.-.-..+|+|-+++. ....++..|.+.|+.+..-|--.. +..+-..+.-..++++-+.++.+
T Consensus 481 ~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~------~~~l~~~~~~v~~ar~~~~~~~~ 552 (570)
T PRK08609 481 IDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHH------TEMLDDMKYGVATARKGWIQKDR 552 (570)
T ss_pred HHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCC------hhhhCcHHHHHHHHHHcCCCHHH
Confidence 44444432222346666666543 236789999999997655443332 23344456667777777777666
No 22
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=86.32 E-value=32 Score=33.02 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHHHcCCCEE-eCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEee------------c-CCCCCCChh
Q 020373 32 SNLNALKLAVLEAIKLGYRHF-DTAAIYGTEKALGEAIAEALRLGLVTSREQLFITS------------K-LWCHNAHHD 97 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~f-DTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~t------------K-~~~~~~~~~ 97 (327)
.+.+.-.+=++.|++.|...+ |-+ ..|.-..+-+.+-+ ...+-|.| | -...+.+++
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLS-tggdl~~iR~~il~---------~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d 143 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLS-TGGDLDEIRRAIIE---------ASPVPVGTVPIYQAAVEAARKYGSVVDMTED 143 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHH---------cCCCCCcChhHHHHHHHHHhcCCChhhCCHH
Confidence 455555566899999998865 543 33432222232221 11111111 0 022356778
Q ss_pred hHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChH
Q 020373 98 RVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCK 177 (327)
Q Consensus 98 ~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~ 177 (327)
.+.+.+++-.+ |-+|.+-+|.- -..+.++.++++|+ -.|+-+-...
T Consensus 144 ~~~~~ie~qa~----~GVDfmTiHcG----------------------------i~~~~~~~~~~~~R--~~giVSRGGs 189 (431)
T PRK13352 144 DLFDVIEKQAK----DGVDFMTIHCG----------------------------VTRETLERLKKSGR--IMGIVSRGGS 189 (431)
T ss_pred HHHHHHHHHHH----hCCCEEEEccc----------------------------hhHHHHHHHHhcCC--ccCeecCCHH
Confidence 88888887766 56888999963 24567889999885 4576666655
Q ss_pred HHHHHHhhCCCCCcccccccCcccch-HHHHHHHHhcCCEEEEeccC
Q 020373 178 KIDTILTFATIPPSINQVEMHPVWQQ-RKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~via~~~l 223 (327)
-+...+...+ .=||+..+ ..+++.|++++|.+---..|
T Consensus 190 ~~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtlSLGDgl 228 (431)
T PRK13352 190 FLAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTLSLGDGL 228 (431)
T ss_pred HHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 5554443322 23455444 67899999999887543333
No 23
>PRK08392 hypothetical protein; Provisional
Probab=85.69 E-value=23 Score=30.75 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCCEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCCce--EEeecCCCCCCChhhHHHHHHHHHHHhCC
Q 020373 37 LKLAVLEAIKLGYRHFDTAAIYG--TEKALGEAIAEALRLGLVTSREQL--FITSKLWCHNAHHDRVIPAIKKSLSALQM 112 (327)
Q Consensus 37 ~~~~l~~A~e~Gin~fDTA~~Yg--sE~~lG~aL~~~~~~~~~~~R~~~--~I~tK~~~~~~~~~~i~~~~~~SL~rLg~ 112 (327)
..++++.|.+.|++.|=.+++.. ....+-..+++..+-. .+.++ ++..=+... ++. ....++.+++ .
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~---~~~~i~il~GiE~~~~---~~~-~~~~~~~~~~--~ 86 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG---EESEIVVLAGIEANIT---PNG-VDITDDFAKK--L 86 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh---hccCceEEEeEEeeec---CCc-chhHHHHHhh--C
Confidence 57889999999999985555532 1122223333221101 11222 222222111 121 2334444543 4
Q ss_pred CccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecC----C----ChHHHHHHHh
Q 020373 113 EYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSN----F----SCKKIDTILT 184 (327)
Q Consensus 113 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~----~----~~~~l~~~~~ 184 (327)
||+ +.-+|.... + ......++.+.++.+.|.+.-+|=-. + ..+.++++++
T Consensus 87 D~v-I~SvH~~~~--~-------------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~ 144 (215)
T PRK08392 87 DYV-IASVHEWFG--R-------------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILD 144 (215)
T ss_pred CEE-EEEeecCcC--C-------------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHH
Confidence 665 566784311 0 11456778888888888876665211 1 1133444443
Q ss_pred hCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHHH
Q 020373 185 FATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQV 255 (327)
Q Consensus 185 ~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~ 255 (327)
.+.-.-..+.+|-....+...+++.|++.|+.++.-|--.. +..+-..+...+++++.|.++.++
T Consensus 145 ~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~------~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 145 LAEAYGKAFEISSRYRVPDLEFIRECIKRGIKLTFASDAHR------PEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred HHHHhCCEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCC------hHHCCcHHHHHHHHHHcCCCHHHe
Confidence 33211123333322223456899999999988765443322 111212356677778888777654
No 24
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=84.64 E-value=7.8 Score=34.88 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=69.4
Q ss_pred HHHHHHcCCcCeEEe-cCCChHHHHHHHhhCCCCCcccccccCcccch--HHHHHHHHhcCCEEEEeccCCCCCCCCCCC
Q 020373 157 MEESQRLGLTKSIGL-SNFSCKKIDTILTFATIPPSINQVEMHPVWQQ--RKLREFCKVKGMNVTAYSPLGAVGTRWGSN 233 (327)
Q Consensus 157 l~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~via~~~l~~~G~l~~~~ 233 (327)
|.+-.++|+. -+|+ .......+.+++...+++++++-.+-.+++.+ ..++..|+..|+..++.-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4455555775 4554 33445566677777889988887777777654 5678889999999888777654
Q ss_pred CcCChHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhccccc
Q 020373 234 QVMENEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDW 286 (327)
Q Consensus 234 ~~~~~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 286 (327)
...++.+|..| .+++|-.++.+|+++.+++..+
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12356677777 5667777888888877766554
No 25
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=82.15 E-value=18 Score=32.77 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=70.4
Q ss_pred HHHHHHcCCcCeEEe-cCCChHHHHHHHhhCCCCCcccccccCcccch--HHHHHHHHhcCCEEEEeccCCCCCCCCCCC
Q 020373 157 MEESQRLGLTKSIGL-SNFSCKKIDTILTFATIPPSINQVEMHPVWQQ--RKLREFCKVKGMNVTAYSPLGAVGTRWGSN 233 (327)
Q Consensus 157 l~~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~via~~~l~~~G~l~~~~ 233 (327)
|.+.-++|+.- +|. .......+.+++..++++++++-.+-.++..+ ..++..++..|+..++.-|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~-------- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS-------- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC--------
Confidence 44555567754 443 34444556666677789988887777777664 4577888889998888776543
Q ss_pred CcCChHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhccccc
Q 020373 234 QVMENEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDW 286 (327)
Q Consensus 234 ~~~~~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 286 (327)
...+..+|..| .+++|-..|+++.++.+++..+
T Consensus 80 --------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 --------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred --------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 13467788887 5677888888888888887665
No 26
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=80.22 E-value=17 Score=31.20 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch-------HHHHHHHHhcCCEEEEeccCCC
Q 020373 153 VWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ-------RKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 153 ~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-------~~l~~~~~~~gi~via~~~l~~ 225 (327)
..+.|+++.+=|+-.=|++.||.-+....-+-..+--|+.-+++|.-++.+ ++.-++|++.|+.|.-..++..
T Consensus 91 P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 91 PDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 345577778888877899999997776655554444567777888766543 7889999999999999988876
No 27
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=78.43 E-value=22 Score=31.79 Aligned_cols=99 Identities=13% Similarity=0.034 Sum_probs=65.1
Q ss_pred HHHHcCCcCeEEe-cCCChHHHHHHHhhCCCCCcccccccCcccch--HHHHHHHHhcCCEEEEeccCCCCCCCCCCCCc
Q 020373 159 ESQRLGLTKSIGL-SNFSCKKIDTILTFATIPPSINQVEMHPVWQQ--RKLREFCKVKGMNVTAYSPLGAVGTRWGSNQV 235 (327)
Q Consensus 159 ~l~~~Gkir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~ 235 (327)
+--++|+. .+|+ ++.....+.+++..++++++++-.+=.+++.+ ..++..|+..|+..++.-|-..
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~---------- 73 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE---------- 73 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC----------
Confidence 33444664 3553 34445556666777889988887777776654 5677788888998888776643
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhccccc
Q 020373 236 MENEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDW 286 (327)
Q Consensus 236 ~~~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 286 (327)
...++.+|..| .+++|-.+|.+++++.+++..+
T Consensus 74 ------------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ------------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ------------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12345666666 4566777777777777765544
No 28
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=76.34 E-value=65 Score=31.58 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=62.3
Q ss_pred eCCCCcCCHHHHHHHHHHHHhcCCCCC-CCceEEeecCCCCCCChhhHHHHHHHHHHHhCCC----ccceeEeecCCCCC
Q 020373 53 DTAAIYGTEKALGEAIAEALRLGLVTS-REQLFITSKLWCHNAHHDRVIPAIKKSLSALQME----YLDLYLIHWPISAK 127 (327)
Q Consensus 53 DTA~~YgsE~~lG~aL~~~~~~~~~~~-R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d----~iDl~~lH~p~~~~ 127 (327)
+..-.||.|+.|-++|++..+.. + .+-++|.|-+... .--+.+..-+++.-++++-+ .+.++.+|.|+...
T Consensus 63 E~d~VfGG~~~L~~~I~~~~~~~---~~p~~I~V~tTC~~e-iIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G 138 (454)
T cd01973 63 EDSAVFGGAKRVEEGVLVLARRY---PDLRVIPIITTCSTE-IIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKG 138 (454)
T ss_pred CCceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHh-hhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCC
Confidence 34456888888889998765432 2 3457788776322 22234444444433333211 36788899887643
Q ss_pred CCCchhhhccCCCCCCCCCCCCHHHHHHHHH-HHHH----cCCcCeEEecC--CChHHHHHHHhhCCCCC
Q 020373 128 PTSEEEEVGMSLPNKEDLSPLDYKGVWEAME-ESQR----LGLTKSIGLSN--FSCKKIDTILTFATIPP 190 (327)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~----~Gkir~iGvs~--~~~~~l~~~~~~~~~~~ 190 (327)
.. . ...+.+++++- .+.. +++|--||-.+ .+.+++.++++..++.+
T Consensus 139 s~--~---------------~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 139 SM--V---------------TGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred CH--H---------------HHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 20 0 01223333332 2222 45576676332 22467778888777553
No 29
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=75.00 E-value=46 Score=30.08 Aligned_cols=124 Identities=21% Similarity=0.167 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHcCCcCeEEecCCChH----HHHH---HHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEec
Q 020373 149 DYKGVWEAMEESQRLGLTKSIGLSNFSCK----KIDT---ILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 149 ~~~~~~~~l~~l~~~Gkir~iGvs~~~~~----~l~~---~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~ 221 (327)
..+.+++.++++++++.---|++-.+-.. -+++ .++.++++-.++ +=-|.....++.+.|+++||..+-.-
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv--pDLP~ee~~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV--PDLPPEESDELLKAAEKHGIDPIFLV 154 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe--CCCChHHHHHHHHHHHHcCCcEEEEe
Confidence 46778888889988876555666555422 2333 233344442222 21122233578999999999888654
Q ss_pred cCCCCCCCCCCCCcCChHHHHHHHHHh----------CCC--------HHHHHHHHHHhc---CcEEEeCCCCHHHHHHh
Q 020373 222 PLGAVGTRWGSNQVMENEALKQIAEAH----------GKT--------VAQVSLRWIVEQ---GVTVVVRSLNPERLKQN 280 (327)
Q Consensus 222 ~l~~~G~l~~~~~~~~~~~l~~la~~~----------g~s--------~aq~al~~~l~~---~~~~i~g~~~~~~l~en 280 (327)
+... .+++++++++.- |+| ...-.++.+.++ |+.+=+|-++++|+++.
T Consensus 155 aPtt-----------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v 223 (265)
T COG0159 155 APTT-----------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQV 223 (265)
T ss_pred CCCC-----------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHH
Confidence 4432 234444444431 222 123344455443 35666778888888887
Q ss_pred hcccc
Q 020373 281 LGIFD 285 (327)
Q Consensus 281 l~a~~ 285 (327)
.++.+
T Consensus 224 ~~~AD 228 (265)
T COG0159 224 AEAAD 228 (265)
T ss_pred HHhCC
Confidence 76654
No 30
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=74.46 E-value=71 Score=29.38 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHH--HHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHh
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYGTEKA--LGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSAL 110 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~--lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rL 110 (327)
+.++..+.++.+.+.|++.|+.--.-..+.. .=+++++. + . ++-|.-+... ..+.+.. ..+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~----~--g--~~~l~vD~n~-~~~~~~A-~~~~~~l~~~ 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA----A--P--DARLRVDANQ-GWTPEEA-VELLRELAEL 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh----C--C--CCeEEEeCCC-CcCHHHH-HHHHHHHHhc
Confidence 5566777788889999999986421111211 11233332 1 3 5567777632 2333322 2333444554
Q ss_pred CCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCC
Q 020373 111 QMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIP 189 (327)
Q Consensus 111 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~ 189 (327)
+ +.++-.|-.. .-++.+.+|++...|. ..|=+-++...+..+++....+
T Consensus 204 ~-----l~~iEeP~~~-------------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d 253 (316)
T cd03319 204 G-----VELIEQPVPA-------------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYD 253 (316)
T ss_pred C-----CCEEECCCCC-------------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCC
Confidence 4 4445544221 1255677788877776 4466667888888888866544
Q ss_pred CcccccccCccc---chHHHHHHHHhcCCEEEEeccCC
Q 020373 190 PSINQVEMHPVW---QQRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 190 ~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~l~ 224 (327)
++|......- .-.++..+|+++|+.++.++-+.
T Consensus 254 --~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 254 --GINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred --EEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 6666655432 22678999999999999876553
No 31
>PRK07945 hypothetical protein; Provisional
Probab=73.04 E-value=83 Score=29.49 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCCEEeCCCC
Q 020373 35 NALKLAVLEAIKLGYRHFDTAAI 57 (327)
Q Consensus 35 ~~~~~~l~~A~e~Gin~fDTA~~ 57 (327)
....+++++|.+.|+..+=.+++
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH 133 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDH 133 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCC
Confidence 44688999999999998744443
No 32
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=72.72 E-value=56 Score=31.63 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=62.9
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhC-CCccceeEeecCCCCCCCCchhh
Q 020373 56 AIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQ-MEYLDLYLIHWPISAKPTSEEEE 134 (327)
Q Consensus 56 ~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~ 134 (327)
-.||.++.|-++|++..+.. +.+-++|.|-+... .-.+.+..-+++.-++.. -..+.++.+|.|...... .
T Consensus 61 ~V~Gg~~~L~~~i~~~~~~~---~p~~I~v~~tC~~~-liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~--~-- 132 (428)
T cd01965 61 AVFGGEDNLIEALKNLLSRY---KPDVIGVLTTCLTE-TIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSH--E-- 132 (428)
T ss_pred eeECcHHHHHHHHHHHHHhc---CCCEEEEECCcchh-hcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcH--H--
Confidence 45788888889998876532 45567787776322 222334444433322211 013567778877654320 0
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHHH-H------HHcCCcCeEEecCC---ChHHHHHHHhhCCCCCc
Q 020373 135 VGMSLPNKEDLSPLDYKGVWEAMEE-S------QRLGLTKSIGLSNF---SCKKIDTILTFATIPPS 191 (327)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~-l------~~~Gkir~iGvs~~---~~~~l~~~~~~~~~~~~ 191 (327)
...+.++++|-+ + ++.++|--||-++. +.+++.++++..++++.
T Consensus 133 -------------~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~ 186 (428)
T cd01965 133 -------------TGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPI 186 (428)
T ss_pred -------------HHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEE
Confidence 112334444432 2 23456777775554 35778888888776543
No 33
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=72.25 E-value=19 Score=34.44 Aligned_cols=79 Identities=14% Similarity=0.003 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHh--CC
Q 020373 35 NALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSAL--QM 112 (327)
Q Consensus 35 ~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rL--g~ 112 (327)
.....++++|++.|++++|||........+.+.. .+..+.+..-+| ++|.-..--.....+.+ .+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a----------~~Agit~v~~~G---~dPGi~nv~a~~a~~~~~~~i 145 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEA----------KKAGITAVLGCG---FDPGITNVLAAYAAKELFDEI 145 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHH----------HHcCeEEEcccC---cCcchHHHHHHHHHHHhhccc
Confidence 3446889999999999999997765422222222 233445555543 33332222233333334 58
Q ss_pred CccceeEeecCCCC
Q 020373 113 EYLDLYLIHWPISA 126 (327)
Q Consensus 113 d~iDl~~lH~p~~~ 126 (327)
++||+|..+.|...
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999988654
No 34
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=71.11 E-value=92 Score=29.77 Aligned_cols=108 Identities=11% Similarity=0.048 Sum_probs=65.5
Q ss_pred hhHHHHHHHHH-----------HHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 020373 97 DRVIPAIKKSL-----------SALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL 165 (327)
Q Consensus 97 ~~i~~~~~~SL-----------~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 165 (327)
+.+++.+++.. +.+| +|++.||.-.....+. +...++..+..++..+.=+
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~----------------d~~~~e~a~~vk~V~~av~ 188 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLD----------------DKSPSEAAKVLEDVLQAVD 188 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCcccc----------------ccCHHHHHHHHHHHHHhCC
Confidence 44565555544 4555 6899999754322111 1224556666666544333
Q ss_pred cC-eEEec---CCChHHHHHHHhhCCC-CCcccccccCcccchHHHHHHHHhcCCEEEEeccCCC
Q 020373 166 TK-SIGLS---NFSCKKIDTILTFATI-PPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 166 ir-~iGvs---~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~ 225 (327)
+= -|+=| ..+++.++.+++.+.- .|.++-..... .-+.+.+.|+++|..++++++..-
T Consensus 189 vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 189 VPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred CCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 32 22222 5579999999998864 56555333321 225789999999999999998853
No 35
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=70.07 E-value=51 Score=29.46 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=63.4
Q ss_pred HHHHHHcCCcCeEEe--cCCChHHHHHHHhhCCCCCcccccccCcccch--HHHHHHHHhcCCEEEEeccCCCCCCCCCC
Q 020373 157 MEESQRLGLTKSIGL--SNFSCKKIDTILTFATIPPSINQVEMHPVWQQ--RKLREFCKVKGMNVTAYSPLGAVGTRWGS 232 (327)
Q Consensus 157 l~~l~~~Gkir~iGv--s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~via~~~l~~~G~l~~~ 232 (327)
|.+..++|+. .+|+ ...++..++ .+...+++++++-.+-++++.+ ..++..|+..|..+++.-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e-~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~------- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAE-ICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD------- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHH-HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC-------
Confidence 3444456775 3443 333344444 4455668888877777776443 3466777777887777654432
Q ss_pred CCcCChHHHHHHHHHhCCCHHHHHHHHHHhcC--cEEEeCCCCHHHHHHhhccccc
Q 020373 233 NQVMENEALKQIAEAHGKTVAQVSLRWIVEQG--VTVVVRSLNPERLKQNLGIFDW 286 (327)
Q Consensus 233 ~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~--~~~i~g~~~~~~l~enl~a~~~ 286 (327)
..-++.++..| .+++|-..+++++++.+++..+
T Consensus 74 ---------------------~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 ---------------------PVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ---------------------HHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 11467777777 5777888888888888877654
No 36
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=69.58 E-value=39 Score=32.76 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=44.3
Q ss_pred CCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCC-CHHHHHHHH-HHHHHcCCcCeE
Q 020373 92 HNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPL-DYKGVWEAM-EESQRLGLTKSI 169 (327)
Q Consensus 92 ~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-~~l~~~Gkir~i 169 (327)
+..+.+.+.+.++..++ |+.|+|.+|.+-......- .....++..+.+. ...+.++.. +.|.+.|. +++
T Consensus 199 P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~-------~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~y 269 (416)
T COG0635 199 PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKF-------AQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQY 269 (416)
T ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchh-------hhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEE
Confidence 45567778888887776 8999999998864322111 1111111111111 123345444 55666777 899
Q ss_pred EecCCCh
Q 020373 170 GLSNFSC 176 (327)
Q Consensus 170 Gvs~~~~ 176 (327)
|+|||..
T Consensus 270 eisnfa~ 276 (416)
T COG0635 270 EISNFAK 276 (416)
T ss_pred eechhcC
Confidence 9999986
No 37
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=69.36 E-value=80 Score=27.78 Aligned_cols=89 Identities=6% Similarity=-0.027 Sum_probs=51.1
Q ss_pred HHHHHcCCcCeEEecCC-------ChHHHHHHHhhCCCCCcccccccCccc------------chHHHHHHHHhcCCEEE
Q 020373 158 EESQRLGLTKSIGLSNF-------SCKKIDTILTFATIPPSINQVEMHPVW------------QQRKLREFCKVKGMNVT 218 (327)
Q Consensus 158 ~~l~~~Gkir~iGvs~~-------~~~~l~~~~~~~~~~~~~~q~~~~~~~------------~~~~l~~~~~~~gi~vi 218 (327)
..+.+.+.|.-||--.. ....+..+.+ .+ ..+.++++++. +...++..|++.|+.++
T Consensus 96 ~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~-~g---v~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~pii 171 (237)
T PRK00912 96 RAACENPRVDILSHPYTKRKDSGINHVLAKEAAR-NN---VAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLV 171 (237)
T ss_pred HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHH-CC---eEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 35777888887775432 1122222222 22 34445554431 11468899999999887
Q ss_pred EeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHHHH
Q 020373 219 AYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVS 256 (327)
Q Consensus 219 a~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~a 256 (327)
.-|--.. +..+........+++..|.+..++-
T Consensus 172 isSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~~ 203 (237)
T PRK00912 172 LTSGAMS------CYDLRSPREMIALAELFGMEEDEAL 203 (237)
T ss_pred EeCCCCc------ccccCCHHHHHHHHHHcCCCHHHHH
Confidence 6544332 1234455777888888887765543
No 38
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=68.80 E-value=85 Score=28.10 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=65.4
Q ss_pred CChhhHHHHHHHHHHHhCCCccceeE-eecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEec
Q 020373 94 AHHDRVIPAIKKSLSALQMEYLDLYL-IHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLS 172 (327)
Q Consensus 94 ~~~~~i~~~~~~SL~rLg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs 172 (327)
.+.+.+.+..++.+ .-|.|.||+=. --+|.. .+-+.. ...+.+...++.+++.-++ -|.|-
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~-~~~~~~---------------~E~~rl~~~v~~l~~~~~~-piSID 82 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGA-EPVSVE---------------EELERVIPVLRALAGEPDV-PISVD 82 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCC-CcCCHH---------------HHHHHHHHHHHHHHhcCCC-eEEEe
Confidence 34556666655554 47899999853 222321 010000 0123455666777665344 38999
Q ss_pred CCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccC
Q 020373 173 NFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l 223 (327)
+++++.++.+++.+ .+.+|-+ +....+.++++.++++|..++.+..-
T Consensus 83 T~~~~v~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 83 TFNAEVAEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred CCcHHHHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcC
Confidence 99999999999976 3344432 22222267899999999999887543
No 39
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=68.02 E-value=92 Score=27.99 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=62.1
Q ss_pred ChhhHHHHHHHHHHHhCCCccceeE-eecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecC
Q 020373 95 HHDRVIPAIKKSLSALQMEYLDLYL-IHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSN 173 (327)
Q Consensus 95 ~~~~i~~~~~~SL~rLg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~ 173 (327)
+.+.+.+..++.+ +-|.|.||+-. --+|.... .+.+ ...+.+...++.+++.-.+- +.|-+
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~-i~~~---------------~E~~rl~~~v~~i~~~~~~p-lSIDT 83 (257)
T cd00739 22 SLDKAVAHAEKMI-AEGADIIDIGGESTRPGADP-VSVE---------------EELERVIPVLEALRGELDVL-ISVDT 83 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCC-CCHH---------------HHHHHHHHHHHHHHhcCCCc-EEEeC
Confidence 3444544444443 46899999853 22332211 0000 01233344556666654444 89999
Q ss_pred CChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEecc
Q 020373 174 FSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSP 222 (327)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~ 222 (327)
++++.++++++.+ ...+|-+ +....+.++++.++++|..++.+..
T Consensus 84 ~~~~v~e~al~~G--~~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 84 FRAEVARAALEAG--ADIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred CCHHHHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 9999999999874 2334422 2222226789999999999998543
No 40
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=67.10 E-value=77 Score=31.41 Aligned_cols=127 Identities=9% Similarity=0.082 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCcCeEEecC----CChHHHHHHHh----hCCCCCc-ccccccCcccchHHHHHHHHhcCCE
Q 020373 146 SPLDYKGVWEAMEESQRLGLTKSIGLSN----FSCKKIDTILT----FATIPPS-INQVEMHPVWQQRKLREFCKVKGMN 216 (327)
Q Consensus 146 ~~~~~~~~~~~l~~l~~~Gkir~iGvs~----~~~~~l~~~~~----~~~~~~~-~~q~~~~~~~~~~~l~~~~~~~gi~ 216 (327)
.....+.+++.++.++++..++.+-++. .+...+.++++ ....+.. ..+...+....+.++++..++.|+.
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~ 299 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLV 299 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCc
Confidence 3356788999999998876688887663 23334433333 2212211 1233344444457899999999987
Q ss_pred EEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcC----cEEEeCC--CCHHHHHHhhcc
Q 020373 217 VTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQG----VTVVVRS--LNPERLKQNLGI 283 (327)
Q Consensus 217 via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~----~~~i~g~--~~~~~l~enl~a 283 (327)
-+..+.=. ..++.++.+.+.+...-..-+++.+.+.| ...|+|. .+.+.+++.++-
T Consensus 300 ~v~iGiES-----------~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~ 361 (497)
T TIGR02026 300 HISLGTEA-----------AAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQ 361 (497)
T ss_pred EEEEcccc-----------CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHH
Confidence 66543332 23445555544443333445677777777 3556774 566777776543
No 41
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=66.52 E-value=1.1e+02 Score=28.50 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCC--CCcCC---HHHHH---HHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHH
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTA--AIYGT---EKALG---EAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIK 104 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA--~~Ygs---E~~lG---~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~ 104 (327)
+.++..+.++.+.+.|++.|-.- ..|.. -+..- +++++. -.+++.|...... ..+.+.. -
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-------~g~~~~l~vDaN~-~~~~~~a----~ 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-------VGPDVDLMVDANG-RWDLAEA----I 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-------hCCCCEEEEECCC-CCCHHHH----H
Confidence 45667777788889999988643 23310 11111 333432 2245555555522 2233322 2
Q ss_pred HHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcC-eEEecCCChHHHHHHH
Q 020373 105 KSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTK-SIGLSNFSCKKIDTIL 183 (327)
Q Consensus 105 ~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~ 183 (327)
+-+++|. ..++.++..|-.. +-++.+.++++.-.+. ..|=|.+++..+.+++
T Consensus 207 ~~~~~l~--~~~i~~iEqP~~~-------------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i 259 (357)
T cd03316 207 RLARALE--EYDLFWFEEPVPP-------------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLL 259 (357)
T ss_pred HHHHHhC--ccCCCeEcCCCCc-------------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHH
Confidence 3334442 2355566666321 1355677787776555 4556667889999998
Q ss_pred hhCCCCCcccccccCcc---cchHHHHHHHHhcCCEEEEec
Q 020373 184 TFATIPPSINQVEMHPV---WQQRKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 184 ~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~via~~ 221 (327)
+.... +++|+...-. .+-.++.+.|+++|+.++.++
T Consensus 260 ~~~~~--d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 260 EAGAV--DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HhCCC--CEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 86644 4666655443 223678999999999988765
No 42
>PRK13796 GTPase YqeH; Provisional
Probab=65.02 E-value=1.3e+02 Score=28.56 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHHcC---CCEEeCCCCcCC-HHHHHHHHHHHHhcCCCCCCCceEEeecCCC--CCCChhhHHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLG---YRHFDTAAIYGT-EKALGEAIAEALRLGLVTSREQLFITSKLWC--HNAHHDRVIPAIKK 105 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~G---in~fDTA~~Ygs-E~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~--~~~~~~~i~~~~~~ 105 (327)
.+.++..++++..-+.- +-.+|..+.-++ ...+.+.+ + .+.-++|.+|.-- .....+.+.+.+..
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~------~---~kpviLViNK~DLl~~~~~~~~i~~~l~~ 124 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV------G---NNPVLLVGNKADLLPKSVKKNKVKNWLRQ 124 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh------C---CCCEEEEEEchhhCCCccCHHHHHHHHHH
Confidence 45566677777666544 445676665443 22222222 1 4566889999721 12223445555666
Q ss_pred HHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHH-HHHH
Q 020373 106 SLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKI-DTIL 183 (327)
Q Consensus 106 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l-~~~~ 183 (327)
-.+.+|....|++.+..-.. ....++++.+.+..+.+.+--+|.+|..-..| ..++
T Consensus 125 ~~k~~g~~~~~v~~vSAk~g----------------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQKG----------------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRII 181 (365)
T ss_pred HHHhcCCCcCcEEEEECCCC----------------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHH
Confidence 66677765557776654321 23678888888887778888999999996554 4444
No 43
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=63.87 E-value=43 Score=30.60 Aligned_cols=69 Identities=19% Similarity=0.384 Sum_probs=52.5
Q ss_pred chHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCC------CHHHHHHHHHHhcC-cEEEeCCCCH
Q 020373 202 QQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGK------TVAQVSLRWIVEQG-VTVVVRSLNP 274 (327)
Q Consensus 202 ~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~------s~aq~al~~~l~~~-~~~i~g~~~~ 274 (327)
|+..+.+++++-++-++. |+ ........|.++|++++. ++.++-..|.-... +.+..|+|+|
T Consensus 198 RQ~a~~~la~~vD~miVV----Gg-------~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP 266 (280)
T TIGR00216 198 RQDAVKELAPEVDLMIVI----GG-------KNSSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTP 266 (280)
T ss_pred HHHHHHHHHhhCCEEEEE----CC-------CCCchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCC
Confidence 346788888888877766 32 223345789999999874 68999999998766 7888999999
Q ss_pred HHHHHhh
Q 020373 275 ERLKQNL 281 (327)
Q Consensus 275 ~~l~enl 281 (327)
+.+-+.+
T Consensus 267 ~~li~eV 273 (280)
T TIGR00216 267 DWIIEEV 273 (280)
T ss_pred HHHHHHH
Confidence 9876543
No 44
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=63.17 E-value=85 Score=27.14 Aligned_cols=69 Identities=6% Similarity=0.027 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccC
Q 020373 151 KGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 151 ~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l 223 (327)
..+...++.+++..-=--+.|-++.++.++.+++. +.++..+-..+.. ..++++.++++|..++++..-
T Consensus 57 ~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 57 ERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 33455566666511112588889999999999998 6555444333332 468999999999999987655
No 45
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=59.82 E-value=1.1e+02 Score=27.58 Aligned_cols=102 Identities=18% Similarity=0.094 Sum_probs=63.0
Q ss_pred ChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCC
Q 020373 95 HHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNF 174 (327)
Q Consensus 95 ~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~ 174 (327)
+.+.+.+...+.. .-|.|.||+-.= + +.++ ..+.....++.+++.-.+ -|-|-++
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~----~~~e-----------------E~~r~~~~v~~l~~~~~~-plsIDT~ 77 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--T----AVEE-----------------EPETMEWLVETVQEVVDV-PLCIDSP 77 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--C----Cchh-----------------HHHHHHHHHHHHHHhCCC-CEEEeCC
Confidence 3455555544443 579999998542 1 1010 123455556666554333 4889999
Q ss_pred ChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEecc
Q 020373 175 SCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSP 222 (327)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~ 222 (327)
+++.++.+++.+.-.+.+|-+.... .+...+++.++++|..+++...
T Consensus 78 ~~~v~eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 78 NPAAIEAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CHHHHHHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 9999999999854344555433321 1235789999999999987653
No 46
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=59.75 E-value=1.4e+02 Score=27.34 Aligned_cols=217 Identities=12% Similarity=0.117 Sum_probs=114.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcC------CHH----HHHHHHH------HHHhcCCCCCCCceEEeecCCCC----
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYG------TEK----ALGEAIA------EALRLGLVTSREQLFITSKLWCH---- 92 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~Yg------sE~----~lG~aL~------~~~~~~~~~~R~~~~I~tK~~~~---- 92 (327)
.++.++++-...+++|-+.++|+ .|- +|+ .+.+.++ ...++-+ -.+...|+.-+++.
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~--g~~~~~iagsiGP~ga~~ 117 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAY--GEENQNIAGSLGPYGAAL 117 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--cccccccceeccchhhhc
Confidence 45667777788899999999987 553 222 1111111 1111112 24445566666542
Q ss_pred --------CCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 020373 93 --------NAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLG 164 (327)
Q Consensus 93 --------~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 164 (327)
..+.+.+.+-...-++.|.-.-+|++.+.-....++ .+.+.+..+++ +
T Consensus 118 a~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~E---------------------a~Aiv~l~~~~---s 173 (300)
T COG2040 118 ADEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITE---------------------AEAIVQLVQEF---S 173 (300)
T ss_pred ChhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHH---------------------HHHHHHHHHHh---C
Confidence 223444444555566677767799998885422110 23344555555 8
Q ss_pred CcCeEEecCCChH------HHHHHHhhCC-C-CCcccccccCcccchHHHHHHH--HhcCCEEEEeccCCCCCCCCCCCC
Q 020373 165 LTKSIGLSNFSCK------KIDTILTFAT-I-PPSINQVEMHPVWQQRKLREFC--KVKGMNVTAYSPLGAVGTRWGSNQ 234 (327)
Q Consensus 165 kir~iGvs~~~~~------~l~~~~~~~~-~-~~~~~q~~~~~~~~~~~l~~~~--~~~gi~via~~~l~~~G~l~~~~~ 234 (327)
|=-+|+++-.+.. -+.++..... . .+..+-+++.....-..+++.. +..++++++|-- . |.-+.+..
T Consensus 174 ~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--S-Ge~~d~~~ 250 (300)
T COG2040 174 KPAWISFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--S-GEQYDPAG 250 (300)
T ss_pred CceEEEEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--c-ccccCcCC
Confidence 8889999877422 2444444333 2 2344455554444446677766 344888888855 2 33322211
Q ss_pred cCChHHHHHHHHHhCCCHHHHHHHHHHhcCcEEEeCC--CCHHHHHHhhcccc
Q 020373 235 VMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRS--LNPERLKQNLGIFD 285 (327)
Q Consensus 235 ~~~~~~l~~la~~~g~s~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 285 (327)
- .... -...--+-.+++..|+-. |..+|=|+ +++.|+.+.-++++
T Consensus 251 k----~w~~-p~~~~~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~~ 297 (300)
T COG2040 251 K----TWHG-PALSADSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKALK 297 (300)
T ss_pred C----cCCC-CCCchhHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHHh
Confidence 0 0000 000001125567788765 45555554 67888887766543
No 47
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=59.71 E-value=65 Score=29.45 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=52.5
Q ss_pred chHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCC------CHHHHHHHHHHhcC-cEEEeCCCCH
Q 020373 202 QQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGK------TVAQVSLRWIVEQG-VTVVVRSLNP 274 (327)
Q Consensus 202 ~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~------s~aq~al~~~l~~~-~~~i~g~~~~ 274 (327)
++..+.+++++-++-++.-+. ....-..|.++|++.+. ++.++-..|..... +.+..|+|+|
T Consensus 199 RQ~a~~~La~~vD~miVVGg~-----------~SsNT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP 267 (281)
T PRK12360 199 RQESAKELSKEVDVMIVIGGK-----------HSSNTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTP 267 (281)
T ss_pred HHHHHHHHHHhCCEEEEecCC-----------CCccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCC
Confidence 346688888888887776322 23345789999999874 68899999998776 8888999999
Q ss_pred HHHHHhh
Q 020373 275 ERLKQNL 281 (327)
Q Consensus 275 ~~l~enl 281 (327)
+.+-+.+
T Consensus 268 ~~li~eV 274 (281)
T PRK12360 268 DWIIEEV 274 (281)
T ss_pred HHHHHHH
Confidence 9776553
No 48
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=59.02 E-value=53 Score=29.09 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=60.8
Q ss_pred CChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcC-CcCeEEec
Q 020373 94 AHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLG-LTKSIGLS 172 (327)
Q Consensus 94 ~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-kir~iGvs 172 (327)
.+.+... .+=+.|..+|+++|.+-..-.+... + .....++.++.+++.+ .++...++
T Consensus 16 ~s~e~~~-~i~~~L~~~GV~~IEvg~~~~~~~~-p--------------------~~~~~~~~i~~l~~~~~~~~~~~l~ 73 (265)
T cd03174 16 FSTEDKL-EIAEALDEAGVDSIEVGSGASPKAV-P--------------------QMEDDWEVLRAIRKLVPNVKLQALV 73 (265)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEeccCcCcccc-c--------------------cCCCHHHHHHHHHhccCCcEEEEEc
Confidence 3444444 4444577899998887665433111 1 0244677888888888 56666776
Q ss_pred CCChHHHHHHHhhCCCCCcccccccCcc----------------cchHHHHHHHHhcCCEEEEec
Q 020373 173 NFSCKKIDTILTFATIPPSINQVEMHPV----------------WQQRKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~----------------~~~~~l~~~~~~~gi~via~~ 221 (327)
......++.+.+.. . ..+++.+..- ..-...+++++++|+.+...-
T Consensus 74 ~~~~~~i~~a~~~g-~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 74 RNREKGIERALEAG-V--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred cCchhhHHHHHhCC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 65566677776643 2 2333333222 111456788999999876644
No 49
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=58.96 E-value=1.9e+02 Score=28.44 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=64.2
Q ss_pred eCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCC----ccceeEeecCCCCCC
Q 020373 53 DTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQME----YLDLYLIHWPISAKP 128 (327)
Q Consensus 53 DTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d----~iDl~~lH~p~~~~~ 128 (327)
+..-.||.|+.|-++|++..+... +.+-++|.|-+.. ..--+.+..-+++.-+++.-+ .+.++.+|.|+....
T Consensus 66 E~dvVfGG~~kL~~aI~~~~~~~~--~p~~I~V~ttC~~-eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs 142 (457)
T TIGR02932 66 EESAVFGGAKRIEEGVLTLARRYP--NLRVIPIITTCST-ETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGS 142 (457)
T ss_pred CCceEECcHHHHHHHHHHHHHhCC--CCCEEEEECCchH-HhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCc
Confidence 344568889999999988654320 2345777777632 222344444444433222211 367889998876542
Q ss_pred CCchhhhccCCCCCCCCCCCCHHHHHHHHHH-HHH-----cCCcCeEEecCC--ChHHHHHHHhhCCCCCc
Q 020373 129 TSEEEEVGMSLPNKEDLSPLDYKGVWEAMEE-SQR-----LGLTKSIGLSNF--SCKKIDTILTFATIPPS 191 (327)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~-----~Gkir~iGvs~~--~~~~l~~~~~~~~~~~~ 191 (327)
.. ...+.+++++-+ +.+ +++|--||-.+. +.+++.++++..++.+.
T Consensus 143 ~~-----------------~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn 196 (457)
T TIGR02932 143 QV-----------------TGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDAN 196 (457)
T ss_pred HH-----------------HHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 10 123444444432 212 355666653322 34578888887765543
No 50
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=58.13 E-value=7.2 Score=36.77 Aligned_cols=53 Identities=8% Similarity=0.201 Sum_probs=34.0
Q ss_pred cCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcc-cc-hHHHHHHHHhcCCE
Q 020373 163 LGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPV-WQ-QRKLREFCKVKGMN 216 (327)
Q Consensus 163 ~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~-~~-~~~l~~~~~~~gi~ 216 (327)
-|+||++||--++++.++++.+...- -.+.+....++ ++ +..+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 39999999999999999888764431 12222222222 22 35677777777764
No 51
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=58.10 E-value=1.4e+02 Score=26.63 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCcCeEEecCCC-hHHHHHHHhhCCCCCcccccc-cCcccchHHHHHHHHhcCCEE
Q 020373 154 WEAMEESQRLGLTKSIGLSNFS-CKKIDTILTFATIPPSINQVE-MHPVWQQRKLREFCKVKGMNV 217 (327)
Q Consensus 154 ~~~l~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~-~~~~~~~~~l~~~~~~~gi~v 217 (327)
|+.+.++++.-.+.-|+..... ++.++++++..+++.+++-.- +.--..-.++.++|+++||.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 4455566655556666555444 778888888765554333111 111112267888899988864
No 52
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=57.81 E-value=1.6e+02 Score=29.29 Aligned_cols=143 Identities=8% Similarity=0.073 Sum_probs=76.8
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhc
Q 020373 57 IYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVG 136 (327)
Q Consensus 57 ~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~ 136 (327)
.+|+++.|-++|++..+.. +.+-++|.|-+- ++-|-..++...+.++.+.++++.++.|.......
T Consensus 66 v~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC~-----selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~------ 131 (511)
T TIGR01278 66 ARGSQTRLVDTVRRVDDRF---KPDLIVVTPSCT-----SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKEN------ 131 (511)
T ss_pred ecchHHHHHHHHHHHHHhc---CCCEEEEeCCCh-----HHHhccCHHHHHHHhccCCCcEEEecCCCcccchh------
Confidence 3678888888888765432 445566776652 23333334444445554467899999886543210
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHH-H----------HHcCCcCeEEecCC------ChHHHHHHHhhCCCCCccc------
Q 020373 137 MSLPNKEDLSPLDYKGVWEAMEE-S----------QRLGLTKSIGLSNF------SCKKIDTILTFATIPPSIN------ 193 (327)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~-l----------~~~Gkir~iGvs~~------~~~~l~~~~~~~~~~~~~~------ 193 (327)
...+.+++++-+ + .+.++|-=||.++. +..++.++++..++.+..+
T Consensus 132 -----------~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s 200 (511)
T TIGR01278 132 -----------QAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGAS 200 (511)
T ss_pred -----------HHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 012223332221 1 12355777888763 3567888888777543221
Q ss_pred --------ccccCcc-cch--HHHHHHH-HhcCCEEEEeccCC
Q 020373 194 --------QVEMHPV-WQQ--RKLREFC-KVKGMNVTAYSPLG 224 (327)
Q Consensus 194 --------q~~~~~~-~~~--~~l~~~~-~~~gi~via~~~l~ 224 (327)
+..+|+. .++ ..+.++. ++.|++++...|++
T Consensus 201 ~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 201 IADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred HHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 0112222 111 2234444 35599988777775
No 53
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=57.14 E-value=1.7e+02 Score=27.51 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCC
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQM 112 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~ 112 (327)
+.++..+.+..+.+.|++.|=.-- .+.+ +++++. -.+++.|..-.+ ...+.+.. .+-++.|.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv----~~~v-~avre~-------~G~~~~l~vDaN-~~w~~~~A----~~~~~~l~- 187 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL----PKLF-EAVREK-------FGFEFHLLHDVH-HRLTPNQA----ARFGKDVE- 187 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH----HHHH-HHHHhc-------cCCCceEEEECC-CCCCHHHH----HHHHHHhh-
Confidence 445555666777889999875311 1111 333432 223444444332 22333322 22233342
Q ss_pred CccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCc
Q 020373 113 EYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPS 191 (327)
Q Consensus 113 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~ 191 (327)
.+++.++-.|-+ .+-++.+.+|++...+. ..|=|.++...+..+++... +.
T Consensus 188 -~~~l~~iEeP~~-------------------------~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~d 239 (361)
T cd03322 188 -PYRLFWMEDPTP-------------------------AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--ID 239 (361)
T ss_pred -hcCCCEEECCCC-------------------------cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CC
Confidence 347777777632 12266788888887766 77888888999999988654 44
Q ss_pred ccccccCccc---chHHHHHHHHhcCCEEEEeccC
Q 020373 192 INQVEMHPVW---QQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 192 ~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~l 223 (327)
++|....-.. .-.++.+.|+++|+.++.++..
T Consensus 240 i~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 240 YIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 6776655432 2367899999999999986544
No 54
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=57.13 E-value=1.6e+02 Score=27.45 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCcCe-EEecCC---ChHHHHHHHhhCCCC-CcccccccCcccchHHHHHHHHhcCCEEEEeccCCCC
Q 020373 152 GVWEAMEESQRLGLTKS-IGLSNF---SCKKIDTILTFATIP-PSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAV 226 (327)
Q Consensus 152 ~~~~~l~~l~~~Gkir~-iGvs~~---~~~~l~~~~~~~~~~-~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~ 226 (327)
+....++...+.=.+=- |..|.. +++.++++++.++-. |.++-.... +-+.+.+.|+++|..|++.++..-
T Consensus 111 e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~Dl- 186 (319)
T PRK04452 111 EAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLDI- 186 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHHH-
Confidence 33444444433333333 555532 688999999987633 544433311 126799999999999999886531
Q ss_pred CCCCCCCCcCChHHHHHHHHHhCCCHHH
Q 020373 227 GTRWGSNQVMENEALKQIAEAHGKTVAQ 254 (327)
Q Consensus 227 G~l~~~~~~~~~~~l~~la~~~g~s~aq 254 (327)
-....+...+.++|+++.+
T Consensus 187 ---------n~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 187 ---------NLAKQLNILLTELGVPRER 205 (319)
T ss_pred ---------HHHHHHHHHHHHcCCCHHH
Confidence 1224444555566664443
No 55
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=57.00 E-value=36 Score=30.37 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHcCCCEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCC------CChhhHHHHHHH
Q 020373 34 LNALKLAVLEAIKLGYRHFDTAAIYG--TEKALGEAIAEALRLGLVTSREQLFITSKLWCHN------AHHDRVIPAIKK 105 (327)
Q Consensus 34 ~~~~~~~l~~A~e~Gin~fDTA~~Yg--sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~------~~~~~i~~~~~~ 105 (327)
+....+.++.+-+.|++.+..++.+- +++..-++++.. ....+.+.+-++.++ .+++...+.+++
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~ 155 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKR 155 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHH
Confidence 45667888888999999999888876 566666788876 666688888877543 236677788888
Q ss_pred HHHHhCCCccceeEeec
Q 020373 106 SLSALQMEYLDLYLIHW 122 (327)
Q Consensus 106 SL~rLg~d~iDl~~lH~ 122 (327)
-|+. | .|.+++..
T Consensus 156 dLeA-G---A~~ViiEa 168 (244)
T PF02679_consen 156 DLEA-G---ADKVIIEA 168 (244)
T ss_dssp HHHH-T---ECEEEE--
T ss_pred HHHC-C---CCEEEEee
Confidence 8875 5 46677764
No 56
>PRK07094 biotin synthase; Provisional
Probab=56.40 E-value=1.3e+02 Score=27.74 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHcCCcCeEEecC-----CChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccC
Q 020373 149 DYKGVWEAMEESQRLGLTKSIGLSN-----FSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 149 ~~~~~~~~l~~l~~~Gkir~iGvs~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l 223 (327)
..+++.+..+.+++.| ++.+.++. +..+.+.++++...-.+ -+.+.++......+.++..++.|+..+..+.=
T Consensus 71 s~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~-~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glE 148 (323)
T PRK07094 71 SPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKEL-DVAITLSLGERSYEEYKAWKEAGADRYLLRHE 148 (323)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccC-CceEEEecCCCCHHHHHHHHHcCCCEEEeccc
Confidence 4688888888888876 56776652 23455555554332111 11223343334467888889999876653322
Q ss_pred CCCCCCCCCCCcCChHHHHHHHHHhCCCHHHH--HHHHHHhcC----cEEEeCC--CCHHHHHHhhcc
Q 020373 224 GAVGTRWGSNQVMENEALKQIAEAHGKTVAQV--SLRWIVEQG----VTVVVRS--LNPERLKQNLGI 283 (327)
Q Consensus 224 ~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~--al~~~l~~~----~~~i~g~--~~~~~l~enl~a 283 (327)
. ...+.+..+.. +.+..+. +++++.+.| ...++|. .+.+++.+.+..
T Consensus 149 s-----------~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~ 203 (323)
T PRK07094 149 T-----------ADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILF 203 (323)
T ss_pred c-----------CCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHH
Confidence 1 22344444443 3444333 577777766 4567774 577777665543
No 57
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=55.78 E-value=90 Score=28.81 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=51.5
Q ss_pred hHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCC------CHHHHHHHHHHhcC-cEEEeCCCCHH
Q 020373 203 QRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGK------TVAQVSLRWIVEQG-VTVVVRSLNPE 275 (327)
Q Consensus 203 ~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~------s~aq~al~~~l~~~-~~~i~g~~~~~ 275 (327)
+..+.+++++.+.-++.-+.- ...-..|.++|++.+. ++.++-..|..... +.+..|+|+|+
T Consensus 201 Q~a~~~La~~vD~miVVGg~~-----------SsNT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~ 269 (298)
T PRK01045 201 QEAVKELAPQADLVIVVGSKN-----------SSNSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPE 269 (298)
T ss_pred HHHHHHHHhhCCEEEEECCCC-----------CccHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCH
Confidence 466888899888877762222 2345789999999874 68999999997666 88889999998
Q ss_pred HHHHhh
Q 020373 276 RLKQNL 281 (327)
Q Consensus 276 ~l~enl 281 (327)
.+-+.+
T Consensus 270 ~li~eV 275 (298)
T PRK01045 270 WLVQEV 275 (298)
T ss_pred HHHHHH
Confidence 765543
No 58
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=54.92 E-value=1.5e+02 Score=26.49 Aligned_cols=105 Identities=11% Similarity=0.006 Sum_probs=61.5
Q ss_pred CChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecC
Q 020373 94 AHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSN 173 (327)
Q Consensus 94 ~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~ 173 (327)
.+++.+.+...+.++ -|.|+||+=. .|. ..+ ..++.-+.+..+++.-. .-|.|-+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~---~~~------------------~~ee~~r~v~~i~~~~~-~piSIDT 77 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG---GLD------------------GVSAMKWLLNLLATEPT-VPLMLDS 77 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC---CCC------------------HHHHHHHHHHHHHHhcC-CcEEeeC
Confidence 445667777666665 5999999854 221 100 01222222222332212 2488889
Q ss_pred CChHHHHHHHhhCCCCCcccccccCcc-cchHHHHHHHHhcCCEEEEeccC
Q 020373 174 FSCKKIDTILTFATIPPSINQVEMHPV-WQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~q~~~~~~-~~~~~l~~~~~~~gi~via~~~l 223 (327)
++++.++.+++.+.-...+|-+..... .....+++.++++|..++.+..-
T Consensus 78 ~~~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 78 TNWEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred CcHHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 999999999997532334443332211 12357889999999999887543
No 59
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=54.41 E-value=74 Score=29.11 Aligned_cols=98 Identities=17% Similarity=0.095 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHH
Q 020373 99 VIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKK 178 (327)
Q Consensus 99 i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~ 178 (327)
-+..+-+.|.++|+++|.+-.++.|..... ..+.++.+..+.+...++...+. .....
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~---------------------~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ 84 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWVPQ---------------------MADAAEVMAGIQRRPGVTYAALT-PNLKG 84 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCcccccc---------------------cccHHHHHHhhhccCCCeEEEEe-cCHHH
Confidence 345566678899999999874444421111 12235666666554445555554 46777
Q ss_pred HHHHHhhCCCCCcccccccCccc--------c------hHHHHHHHHhcCCEEEE
Q 020373 179 IDTILTFATIPPSINQVEMHPVW--------Q------QRKLREFCKVKGMNVTA 219 (327)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~~--------~------~~~l~~~~~~~gi~via 219 (327)
++.+++. +.+...+-++.|... + -...+++++++|+.+.+
T Consensus 85 ie~A~~~-g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 85 LEAALAA-GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HHHHHHc-CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8888774 333222222222211 0 14578999999998853
No 60
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=53.70 E-value=1.8e+02 Score=26.62 Aligned_cols=137 Identities=17% Similarity=0.271 Sum_probs=78.9
Q ss_pred CChHHHHHHHHHHHH-cCCCEEeCCCCc----C-C-HHHHHHH---HHHHHhcCCCCCCCceEEeecCCCCCCChhhHHH
Q 020373 32 SNLNALKLAVLEAIK-LGYRHFDTAAIY----G-T-EKALGEA---IAEALRLGLVTSREQLFITSKLWCHNAHHDRVIP 101 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e-~Gin~fDTA~~Y----g-s-E~~lG~a---L~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~ 101 (327)
.+.+.+++.++..++ .+.+++|.-..- + + ...+-++ |++..++|++ =||..- .+.-+-+.+
T Consensus 117 fsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~-----RfiGit----gypldvl~~ 187 (342)
T KOG1576|consen 117 FSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKI-----RFIGIT----GYPLDVLTE 187 (342)
T ss_pred chHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCce-----eEeeec----ccchHHHHH
Confidence 466788888988885 699999863322 2 2 2334444 4444344431 122222 232243444
Q ss_pred HHHHHHHHhCCCccceeE--eecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHH
Q 020373 102 AIKKSLSALQMEYLDLYL--IHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKI 179 (327)
Q Consensus 102 ~~~~SL~rLg~d~iDl~~--lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l 179 (327)
.. +-+..++|.++ +|.- ......+..|+.++.+ .+||.|-++-.+
T Consensus 188 ~a-----e~~~G~~dvvlsY~ry~------------------------l~d~tLl~~~~~~~sk----~vgVi~Asalsm 234 (342)
T KOG1576|consen 188 CA-----ERGKGRLDVVLSYCRYT------------------------LNDNTLLRYLKRLKSK----GVGVINASALSM 234 (342)
T ss_pred HH-----hcCCCceeeehhhhhhc------------------------cccHHHHHHHHHHHhc----CceEEehhhHHH
Confidence 44 45667889887 5532 2236678888888854 468888665544
Q ss_pred HHHHhhCCCCCcccccccCcccch-----HHHHHHHHhcCCEE
Q 020373 180 DTILTFATIPPSINQVEMHPVWQQ-----RKLREFCKVKGMNV 217 (327)
Q Consensus 180 ~~~~~~~~~~~~~~q~~~~~~~~~-----~~l~~~~~~~gi~v 217 (327)
--+-+ .+.+ +++|..++ +...++|+++||.+
T Consensus 235 gLLt~-~gp~------~wHPaS~Elk~~a~~aa~~Cq~rnv~l 270 (342)
T KOG1576|consen 235 GLLTN-QGPP------PWHPASDELKEAAKAAAEYCQSRNVEL 270 (342)
T ss_pred HHhhc-CCCC------CCCCCCHHHHHHHHHHHHHHHHcCccH
Confidence 44333 3322 34444443 45688999999875
No 61
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=53.37 E-value=2.1e+02 Score=28.43 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeec
Q 020373 37 LKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSK 88 (327)
Q Consensus 37 ~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK 88 (327)
+.++..+|-.+||+++||= +|..-.-|-..+ |+.+.+..+.+.+-
T Consensus 40 V~el~~aaqalGIk~I~~R----nEqaA~yAA~A~---gyLt~kpGV~lVvs 84 (571)
T KOG1185|consen 40 VIELAVAAQALGIKFIGTR----NEQAAVYAASAY---GYLTGKPGVLLVVS 84 (571)
T ss_pred hHHHHHHHHHcCCeEeecc----cHHHHHHHHHHh---hhhcCCCeEEEEec
Confidence 4667788889999999864 444444443333 44334444554444
No 62
>PRK07534 methionine synthase I; Validated
Probab=52.65 E-value=2e+02 Score=26.94 Aligned_cols=228 Identities=12% Similarity=0.068 Sum_probs=120.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCC---------HH----HHHHHH---HHHHhcCCCCCCCceEEeecCCCC----
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYGT---------EK----ALGEAI---AEALRLGLVTSREQLFITSKLWCH---- 92 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~Ygs---------E~----~lG~aL---~~~~~~~~~~~R~~~~I~tK~~~~---- 92 (327)
.++.+.++=+..+++|-+.+=|.....+ ++ +.-.+. ++.. .. ...+++|+.-+++.
T Consensus 43 ~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~-~~---~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 43 HPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVA-DK---AGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred CHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHH-Hh---cCCccEEEEecCCCcccc
Confidence 3455556556668999999987654223 21 111122 1111 11 12357888888653
Q ss_pred ----CCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCe
Q 020373 93 ----NAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKS 168 (327)
Q Consensus 93 ----~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~ 168 (327)
+.+.+.+.+....-++.|--..+|++.+--. ....++..+++.+++.|+=-.
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~------------------------p~l~E~~a~~~~~~~~~~Pv~ 174 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKAGGADVLWVETI------------------------SAPEEIRAAAEAAKLAGMPWC 174 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc------------------------CCHHHHHHHHHHHHHcCCeEE
Confidence 1345567777777777774456999999853 125777777777777776444
Q ss_pred EEecCCC---------hHHHHHHHhhCCCCCcccccccCc-ccc-hHHHHHHHHhc-CCEEEEeccCCCCCC-CCCCCCc
Q 020373 169 IGLSNFS---------CKKIDTILTFATIPPSINQVEMHP-VWQ-QRKLREFCKVK-GMNVTAYSPLGAVGT-RWGSNQV 235 (327)
Q Consensus 169 iGvs~~~---------~~~l~~~~~~~~~~~~~~q~~~~~-~~~-~~~l~~~~~~~-gi~via~~~l~~~G~-l~~~~~~ 235 (327)
+.++..+ ...+..+++.....++.+-+|+.. ... ...++...... ++.+++|--- |. .+.....
T Consensus 175 vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNa---G~p~~~~~~~ 251 (336)
T PRK07534 175 GTMSFDTAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNA---GIPKYVDGHI 251 (336)
T ss_pred EEEEECCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCC---CCcccCCCcc
Confidence 5554322 222333333222334666677664 221 13344444433 5666665432 22 1100000
Q ss_pred CChHHHHHHHHHhCCC---HHHHHHHHHHhcCcEEEeCC--CCHHHHHHhhccccc--ccCHHHHHHHHhhhccC
Q 020373 236 MENEALKQIAEAHGKT---VAQVSLRWIVEQGVTVVVRS--LNPERLKQNLGIFDW--ELTDDDYDKINQIAQRR 303 (327)
Q Consensus 236 ~~~~~l~~la~~~g~s---~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~~--~Lt~~~~~~i~~~~~~~ 303 (327)
.+..+ .++.+-.| ...|+.+|=|+ ++|+|+++..+.++. +-.......|.+....+
T Consensus 252 -----------~~~~~p~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~~~~~~~~~~~~~~~~~~~~~ 314 (336)
T PRK07534 252 -----------HYDGTPELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALDARPRGPRPSLETIVERLGPF 314 (336)
T ss_pred -----------ccCCCHHHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHccCCCCCCCCHHHHHHHhccc
Confidence 11122 35566677 45577777666 789999887776642 22333333444444443
No 63
>PRK14017 galactonate dehydratase; Provisional
Probab=52.16 E-value=86 Score=29.82 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEEeccC
Q 020373 154 WEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 154 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~l 223 (327)
++.+.+|++...+. ..|=|.++...+..+++...+ .++|......- +-.++.+.|+.+||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~--d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV--DIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC--CeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 56788888887666 677788889999999887644 46666655432 2367899999999999987653
No 64
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=51.50 E-value=1.8e+02 Score=30.14 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCC
Q 020373 34 LNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQME 113 (327)
Q Consensus 34 ~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d 113 (327)
.+-+.+++++|-|.|++.+- .|.-+..+ . +... +-|+-|+..|..++- ..--.+++..+--.-.
T Consensus 42 gEIaIRvFRa~tEL~~~tvA---iYseqD~~-s-MHRq-------KADEaY~iGk~l~PV----~AYL~ideii~iak~~ 105 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTVA---IYSEQDRL-S-MHRQ-------KADEAYLIGKGLPPV----GAYLAIDEIISIAKKH 105 (1176)
T ss_pred CcchhHHHHHHhhhcceEEE---EEeccchh-h-hhhh-------ccccceecccCCCch----hhhhhHHHHHHHHHHc
Confidence 35678999999999999884 77533322 1 2222 678899999974332 2233333333333333
Q ss_pred ccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHh---------
Q 020373 114 YLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILT--------- 184 (327)
Q Consensus 114 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~--------- 184 (327)
.+|. +| |...- +.+--+ +.+.+.+--|++||=| ++.+..+=+
T Consensus 106 ~vda--vH-PGYGF----------------------LSErsd-FA~av~~AGi~fiGPs---peVi~~mGDKv~AR~~Ai 156 (1176)
T KOG0369|consen 106 NVDA--VH-PGYGF----------------------LSERSD-FAQAVQDAGIRFIGPS---PEVIDSMGDKVAARAIAI 156 (1176)
T ss_pred CCCe--ec-CCccc----------------------cccchH-HHHHHHhcCceEeCCC---HHHHHHhhhHHHHHHHHH
Confidence 4554 56 22110 111122 3334444447899954 555443321
Q ss_pred hCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCC
Q 020373 185 FATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 185 ~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~ 225 (327)
.++++ ++.---.+...-.+.+++|+++|.+||--.++++
T Consensus 157 ~agVp--vVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGG 195 (1176)
T KOG0369|consen 157 EAGVP--VVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGG 195 (1176)
T ss_pred HcCCC--ccCCCCCCcccHHHHHHHHHhcCCcEEEeecccC
Confidence 22222 1111111222237899999999999999999987
No 65
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=51.36 E-value=1.6e+02 Score=25.50 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEEeccCCC
Q 020373 154 WEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 154 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~l~~ 225 (327)
++.+.+|++...+. ..+-|.++...+..+++...+ .++|+..+..- .-.++.++|+++|+.++.++.+..
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~--d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAV--DILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCC--CEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 55677788777665 445555667777677665543 46666655432 226788999999999999877643
No 66
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=51.34 E-value=58 Score=32.10 Aligned_cols=128 Identities=18% Similarity=0.124 Sum_probs=84.0
Q ss_pred HHHHHHHcCCCEE--eCCCCc---C-------CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCC-ChhhH-------
Q 020373 40 AVLEAIKLGYRHF--DTAAIY---G-------TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNA-HHDRV------- 99 (327)
Q Consensus 40 ~l~~A~e~Gin~f--DTA~~Y---g-------sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~-~~~~i------- 99 (327)
-++..-+.|+..+ =||.+| | .-+.+..+-++.+... -+-++||++=++.-.. -|..+
T Consensus 108 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 108 HFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCceE
Confidence 3566678898877 466665 2 3455566666554222 4777888888764211 01000
Q ss_pred ---HHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCCh
Q 020373 100 ---IPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSC 176 (327)
Q Consensus 100 ---~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~ 176 (327)
+-.-.+.-+|+.+.|+|.+- .+++++++..++.+++|+...||+-..-.
T Consensus 185 i~vEvd~~ri~kR~~~gyld~~~----------------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaa 236 (545)
T TIGR01228 185 IAVEVDESRIDKRLETKYCDEQT----------------------------DSLDEALARAEEAKAEGKPISIGLLGNAA 236 (545)
T ss_pred EEEEECHHHHHHHHhcCcceeEc----------------------------CCHHHHHHHHHHHHHcCCceEEEeeccHH
Confidence 00123344688899999643 13689999999999999999999998889
Q ss_pred HHHHHHHhhCC-CCCcccccccC
Q 020373 177 KKIDTILTFAT-IPPSINQVEMH 198 (327)
Q Consensus 177 ~~l~~~~~~~~-~~~~~~q~~~~ 198 (327)
+.++++++..- ++.+.-|...+
T Consensus 237 dv~~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 237 EVLPELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred HHHHHHHHcCCCCCCcCCCCccc
Confidence 99999988642 33445576653
No 67
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=51.34 E-value=1.8e+02 Score=26.04 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEec
Q 020373 153 VWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 153 ~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~ 221 (327)
+...++.+++.-.+ -+.+-+++++.++.+++.+ .+ .+|-+..- . ..++++.++++|..++.+.
T Consensus 63 l~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G-~~-iINsis~~--~-~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 63 VVPVIKALRDQPDV-PISVDTYRAEVARAALEAG-AD-IINDVSGG--Q-DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcC-CC-EEEECCCC--C-CchhHHHHHHcCCcEEEEe
Confidence 55556666665233 4899999999999999873 32 34433322 1 4578899999999999854
No 68
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=51.32 E-value=92 Score=27.75 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHH-----------------HHHHHHHHhcCCCCCCCceEEeecCCCCCC
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYGTEKAL-----------------GEAIAEALRLGLVTSREQLFITSKLWCHNA 94 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~l-----------------G~aL~~~~~~~~~~~R~~~~I~tK~~~~~~ 94 (327)
.+.++..++.+++-+.||.+|=|.-.-.+-..+ =..|+...+ ....+.|+|=. .
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-----tgkPvIlSTG~----s 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK-----TGKPVILSTGM----S 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-----T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH-----hCCcEEEECCC----C
Confidence 678889999999999999999665432111111 011222211 23346666543 3
Q ss_pred ChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCC
Q 020373 95 HHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNF 174 (327)
Q Consensus 95 ~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~ 174 (327)
+-+.|.++++...++ | .-++.++|+...+.... .+--++.|..|++.=- -.||.|.|
T Consensus 124 tl~EI~~Av~~~~~~-~--~~~l~llHC~s~YP~~~-------------------e~~NL~~i~~L~~~f~-~~vG~SDH 180 (241)
T PF03102_consen 124 TLEEIERAVEVLREA-G--NEDLVLLHCVSSYPTPP-------------------EDVNLRVIPTLKERFG-VPVGYSDH 180 (241)
T ss_dssp -HHHHHHHHHHHHHH-C--T--EEEEEE-SSSS--G-------------------GG--TTHHHHHHHHST-SEEEEEE-
T ss_pred CHHHHHHHHHHHHhc-C--CCCEEEEecCCCCCCCh-------------------HHcChHHHHHHHHhcC-CCEEeCCC
Confidence 345566666544333 3 35899999986554311 1223556666665433 56899999
Q ss_pred ChHH
Q 020373 175 SCKK 178 (327)
Q Consensus 175 ~~~~ 178 (327)
+...
T Consensus 181 t~g~ 184 (241)
T PF03102_consen 181 TDGI 184 (241)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 9654
No 69
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=50.93 E-value=2.3e+02 Score=27.18 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC-------CHHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYG-------TEKALGEAIAEALRLGLVTSREQLFITSKL 89 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~Yg-------sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~ 89 (327)
.+..++.+.+..|++.|- ...|+ +-+.+.+.|..-+...+ ..++|||++-+
T Consensus 78 ~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl--~a~DV~ltsGC 135 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKL--TADDVVLTSGC 135 (447)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCcc--CcCceEEeccc
Confidence 356778888999999883 45676 23334444322111222 78999998765
No 70
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=50.60 E-value=1.1e+02 Score=29.47 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCcc---cchHHHHHHHHhcCCEEEEeccC
Q 020373 154 WEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPV---WQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 154 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~via~~~l 223 (327)
++.+.+|++.-.+. ..|=|.++...+..+++...+ .++|....-. ..-.++.+.|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~--dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLI--DYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCC--CEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 56788888877666 677888889999999886543 4666655543 22367899999999999987654
No 71
>PRK05414 urocanate hydratase; Provisional
Probab=50.30 E-value=62 Score=32.01 Aligned_cols=128 Identities=20% Similarity=0.155 Sum_probs=83.9
Q ss_pred HHHHHHHcCCCEE--eCCCCc---C-------CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCC-ChhhH-------
Q 020373 40 AVLEAIKLGYRHF--DTAAIY---G-------TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNA-HHDRV------- 99 (327)
Q Consensus 40 ~l~~A~e~Gin~f--DTA~~Y---g-------sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~-~~~~i------- 99 (327)
-++..-+.|+..+ =||.+| | .-+.+..+-++.+. |- -+-++||++=++.-.. -|...
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCceE
Confidence 3566677888877 467665 2 34555666665542 21 4677888888764211 01000
Q ss_pred ---HHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCCh
Q 020373 100 ---IPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSC 176 (327)
Q Consensus 100 ---~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~ 176 (327)
+-.-.+.-+|+.+.|+|.+- .+++++++..++.+++|+...||+-..-.
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~~----------------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaa 245 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEKA----------------------------DDLDEALALAEEAKAAGEPLSIGLLGNAA 245 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeEc----------------------------CCHHHHHHHHHHHHHcCCceEEEEeccHH
Confidence 01123345688899999643 13789999999999999999999998888
Q ss_pred HHHHHHHhhCC-CCCcccccccC
Q 020373 177 KKIDTILTFAT-IPPSINQVEMH 198 (327)
Q Consensus 177 ~~l~~~~~~~~-~~~~~~q~~~~ 198 (327)
+.++++++..- ++.+.-|...+
T Consensus 246 dv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 246 DVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred HHHHHHHHcCCCCCccCcCcccc
Confidence 99999988643 33445576553
No 72
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=49.78 E-value=1.1e+02 Score=28.98 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHH
Q 020373 99 VIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKK 178 (327)
Q Consensus 99 i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~ 178 (327)
-+..+-+.|.++|+++|++-..-.|..... .-+..++++.+. +...++..++. .....
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq------------------mad~~ev~~~i~---~~~~~~~~~l~-~n~~d 126 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQ------------------LADAKDVMAAVR---NLEGARFPVLT-PNLKG 126 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccc------------------cccHHHHHHHHH---hccCCceeEEc-CCHHH
Confidence 456677779999999999864433321110 012344555553 33335555554 47888
Q ss_pred HHHHHhhCCCCCcccccccCccc--------ch------HHHHHHHHhcCCEEEE
Q 020373 179 IDTILTFATIPPSINQVEMHPVW--------QQ------RKLREFCKVKGMNVTA 219 (327)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~~--------~~------~~l~~~~~~~gi~via 219 (327)
++.+++.. .+.+.+-++.+... ++ .+++++|+++|+.+.+
T Consensus 127 ie~A~~~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 127 FEAAIAAG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred HHHHHHcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 88888753 33222222222211 11 4678999999998853
No 73
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=49.45 E-value=1.3e+02 Score=27.10 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEec
Q 020373 93 NAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLS 172 (327)
Q Consensus 93 ~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs 172 (327)
.++.+ -+..+-+.|.++|+|+|++-+........ .........+.++.+..+.+ +..+-.+++
T Consensus 16 ~f~~~-~~~~ia~~L~~~GVd~IEvG~~~~~~~~~---------------~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~ 78 (266)
T cd07944 16 DFGDE-FVKAIYRALAAAGIDYVEIGYRSSPEKEF---------------KGKSAFCDDEFLRRLLGDSK-GNTKIAVMV 78 (266)
T ss_pred cCCHH-HHHHHHHHHHHCCCCEEEeecCCCCcccc---------------CCCccCCCHHHHHHHHhhhc-cCCEEEEEE
Confidence 34444 45556666999999999987654321110 00011112455666655543 345555555
Q ss_pred CCC---hHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEe
Q 020373 173 NFS---CKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAY 220 (327)
Q Consensus 173 ~~~---~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~ 220 (327)
... .+.++.+.+ +.++..-+.++.+.+..-.+.+++++++|+.|...
T Consensus 79 ~~~~~~~~~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 79 DYGNDDIDLLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCCCCCHHHHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 444 244444433 33443233334443333467889999999876643
No 74
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=49.28 E-value=2.6e+02 Score=27.15 Aligned_cols=116 Identities=12% Similarity=0.181 Sum_probs=62.5
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCC-ccceeEeecCCCCCCCCch
Q 020373 54 TAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQME-YLDLYLIHWPISAKPTSEE 132 (327)
Q Consensus 54 TA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d-~iDl~~lH~p~~~~~~~~~ 132 (327)
..-.||.++.|-++|++..+.. +.+-++|.|-+-. ..-.+.+..-+++.-++.... .+.++.++.|..... ..
T Consensus 63 ~d~V~Gg~~~L~~ai~~~~~~~---~p~~I~v~ttC~~-~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs--~~ 136 (435)
T cd01974 63 DAAVFGGQNNLIDGLKNAYAVY---KPDMIAVSTTCMA-EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGS--HI 136 (435)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCEEEEeCCchH-hhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccC--HH
Confidence 3456888889999998765432 4556777777632 222334444444433333211 368888888765432 10
Q ss_pred hhhccCCCCCCCCCCCCHHHHHHHHH-HHHH-------cCCcCeEE-ecCC-C-hHHHHHHHhhCCCCC
Q 020373 133 EEVGMSLPNKEDLSPLDYKGVWEAME-ESQR-------LGLTKSIG-LSNF-S-CKKIDTILTFATIPP 190 (327)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~-------~Gkir~iG-vs~~-~-~~~l~~~~~~~~~~~ 190 (327)
...+.++++|- .+.. .++|-=|| ..+. + .+++.++++..++.+
T Consensus 137 ---------------~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~ 190 (435)
T cd01974 137 ---------------TGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDY 190 (435)
T ss_pred ---------------HHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCE
Confidence 11233444443 2222 22344444 2222 2 568888888887664
No 75
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=49.09 E-value=53 Score=31.51 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHHcCCCEE-eCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEee---------cC-CCCCCChhhHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHF-DTAAIYGTEKALGEAIAEALRLGLVTSREQLFITS---------KL-WCHNAHHDRVI 100 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~f-DTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~t---------K~-~~~~~~~~~i~ 100 (327)
.+.+.-.+=+..|.+.|-..+ |-+. -|.-..+-+.+- ....+-|.| |- ...+.+++.+.
T Consensus 73 ~d~~~E~~K~~~A~~~GADtvMDLSt-ggdl~~iR~~il---------~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~ 142 (420)
T PF01964_consen 73 SDIEEELEKLKIAEKAGADTVMDLST-GGDLDEIRRAIL---------ENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFF 142 (420)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE----STTHHHHHHHHH---------HT-SS-EEE-HHHHHHHHTTT-GGG--HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCC-CCCHHHHHHHHH---------HhCCCccccchHHHHHHHhCCChhhCCHHHHH
Confidence 344555666899999998866 5442 233323333332 223344433 11 12466778888
Q ss_pred HHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHH
Q 020373 101 PAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKID 180 (327)
Q Consensus 101 ~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~ 180 (327)
+.+++-.+ +-+|.+-+|.-- ..+.++.++++|++- |+-+-...-+.
T Consensus 143 ~~ie~qa~----~GVDfmtiH~gi----------------------------t~~~~~~~~~~~R~~--giVSRGGs~l~ 188 (420)
T PF01964_consen 143 DVIEKQAK----DGVDFMTIHCGI----------------------------TRETLERLKKSGRIM--GIVSRGGSILA 188 (420)
T ss_dssp HHHHHHHH----HT--EEEE-TT------------------------------GGGGGGGT--TSSS------HHHHHHH
T ss_pred HHHHHHHH----cCCCEEEEccch----------------------------hHHHHHHHhhhcccc--CccccchHHHH
Confidence 88887776 457889999641 234467777777755 44433333333
Q ss_pred HHHhhCCCCCcccccccCcccch-HHHHHHHHhcCCEEEEeccC
Q 020373 181 TILTFATIPPSINQVEMHPVWQQ-RKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 181 ~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~via~~~l 223 (327)
..+.... .=||+..+ .++++.|+++++.+---..|
T Consensus 189 ~WM~~n~--------~ENPly~~fD~lLeI~k~yDVtLSLGDgl 224 (420)
T PF01964_consen 189 AWMLHNG--------KENPLYEHFDRLLEIAKEYDVTLSLGDGL 224 (420)
T ss_dssp HHHHHHT--------S--HHHHTHHHHHHHHTTTT-EEEE--TT
T ss_pred HHHHhcC--------CcCcHHHhHHHHHHHHHHhCeeEeccccc
Confidence 3222111 12233322 45666666666666543333
No 76
>PRK06361 hypothetical protein; Provisional
Probab=48.77 E-value=1.7e+02 Score=24.99 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=37.1
Q ss_pred hHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHHHHHHHH
Q 020373 203 QRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWI 260 (327)
Q Consensus 203 ~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~ 260 (327)
...+++.|++.|+.++.-|.... +..+...+.+..++++.|.+..++---+.
T Consensus 150 ~~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 150 NGHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred hHHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 36799999999999887776653 23344457778888888888877654443
No 77
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=48.07 E-value=2.3e+02 Score=26.24 Aligned_cols=132 Identities=12% Similarity=0.071 Sum_probs=76.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEeC---CC-----CcC-------CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCCh
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDT---AA-----IYG-------TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHH 96 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDT---A~-----~Yg-------sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 96 (327)
.+.++..+....+.+.|+..||- .+ .|| .-+.+.+.++...+ . -.+++-|+.|+.....+.
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~-~---~~~~~pVsvKiR~g~~~~ 147 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE-A---VPAHLPVTVKVRLGWDSG 147 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHH-h---cCCCcceEEEEECCCCCc
Confidence 56677777778888999999982 22 233 24556666655422 1 122466888863221111
Q ss_pred hhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCC-C
Q 020373 97 DRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNF-S 175 (327)
Q Consensus 97 ~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~-~ 175 (327)
+. ...+-+.|+..| +|.+.+|.-.... .+... .--|+...++++.-.|--||.... +
T Consensus 148 ~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~----------------~y~g~--~~~~~~i~~ik~~~~iPVi~nGdI~t 205 (312)
T PRK10550 148 ER-KFEIADAVQQAG---ATELVVHGRTKED----------------GYRAE--HINWQAIGEIRQRLTIPVIANGEIWD 205 (312)
T ss_pred hH-HHHHHHHHHhcC---CCEEEECCCCCcc----------------CCCCC--cccHHHHHHHHhhcCCcEEEeCCcCC
Confidence 22 234555566667 5677788532211 00000 002677788888777888888776 4
Q ss_pred hHHHHHHHhhCCCC
Q 020373 176 CKKIDTILTFATIP 189 (327)
Q Consensus 176 ~~~l~~~~~~~~~~ 189 (327)
+++++++++..+.+
T Consensus 206 ~~da~~~l~~~g~D 219 (312)
T PRK10550 206 WQSAQQCMAITGCD 219 (312)
T ss_pred HHHHHHHHhccCCC
Confidence 77888888766544
No 78
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=47.79 E-value=1.2e+02 Score=27.77 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=53.0
Q ss_pred chHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCC------CHHHHHHHHHHhcC-cEEEeCCCCH
Q 020373 202 QQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGK------TVAQVSLRWIVEQG-VTVVVRSLNP 274 (327)
Q Consensus 202 ~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~------s~aq~al~~~l~~~-~~~i~g~~~~ 274 (327)
++..+.+.+.+-++-++.-++-. ....+|.++|++.|. ++.++=..|..... +.+-.|+|+|
T Consensus 202 RQ~Avk~la~~~Dl~iVVG~~nS-----------SNs~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStP 270 (294)
T COG0761 202 RQDAVKELAPEVDLVIVVGSKNS-----------SNSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTP 270 (294)
T ss_pred HHHHHHHHhhcCCEEEEECCCCC-----------ccHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCC
Confidence 34567777777777777644443 346889999999986 57888899998866 7788999999
Q ss_pred HHHHHhh
Q 020373 275 ERLKQNL 281 (327)
Q Consensus 275 ~~l~enl 281 (327)
+-|-+++
T Consensus 271 d~lV~~V 277 (294)
T COG0761 271 DWLVQEV 277 (294)
T ss_pred HHHHHHH
Confidence 9887764
No 79
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=47.48 E-value=2.2e+02 Score=25.83 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=85.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEeC----------CCCcC-CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDT----------AAIYG-TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVI 100 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDT----------A~~Yg-sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~ 100 (327)
.+.++..+..+.+.+.|+..||. ...|+ +.+.+-+.++... ..-++-|..|+.+.. +.+
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr------~~~~~Pv~vKl~~~~---~~~- 168 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK------KATDVPVIVKLTPNV---TDI- 168 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH------hccCCCEEEEeCCCc---hhH-
Confidence 34677788888888999999986 22343 5666666666541 111567888875322 222
Q ss_pred HHHHHHHHHhCCCccceeEe-ecC--CCCCCCCchhhhccCCCCC-CCCC-CCCHHHHHHHHHHHHHcCCcCeEEecCC-
Q 020373 101 PAIKKSLSALQMEYLDLYLI-HWP--ISAKPTSEEEEVGMSLPNK-EDLS-PLDYKGVWEAMEESQRLGLTKSIGLSNF- 174 (327)
Q Consensus 101 ~~~~~SL~rLg~d~iDl~~l-H~p--~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~l~~~Gkir~iGvs~~- 174 (327)
..+-+.+...|.|.|++.-- +.. +.... .|. .... .-++ .....-.++.+.++++.=.+.-||+...
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~----~~~---~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~ 241 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETR----KPI---LGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA 241 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccC----cee---ecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC
Confidence 23334567788777655310 000 00000 000 0000 0000 0111235667777777656888888887
Q ss_pred ChHHHHHHHhhCCCCCcccccccCccc-c---h---HHHHHHHHhcCC
Q 020373 175 SCKKIDTILTFATIPPSINQVEMHPVW-Q---Q---RKLREFCKVKGM 215 (327)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~q~~~~~~~-~---~---~~l~~~~~~~gi 215 (327)
+++.+.+++.. +. +.+|+--..+. + . +++-++.+++|.
T Consensus 242 ~~~da~~~l~~-GA--d~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 242 SGEDALEFLMA-GA--SAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred CHHHHHHHHHc-CC--CEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 57888888873 33 35544322222 1 1 445566666653
No 80
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=47.46 E-value=3.3e+02 Score=27.86 Aligned_cols=212 Identities=13% Similarity=0.133 Sum_probs=115.5
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcCC-------------HHHHHHHHHHHHhcCCCCCCCceEEeecCCCCC-----
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYGT-------------EKALGEAIAEALRLGLVTSREQLFITSKLWCHN----- 93 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~Ygs-------------E~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~----- 93 (327)
.+++...++-+..+++|.+.+.|...+.+ +++...+.+-.. ... . .+++|+.-+++..
T Consensus 40 ~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr--~a~-~-~~~~VagsiGP~g~~~~~ 115 (612)
T PRK08645 40 SHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAR--EAA-G-DDVYVAGTIGPIGGRGPL 115 (612)
T ss_pred cCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHH--HHh-c-CCCeEEEeCCCCCCCCCC
Confidence 35566667666778999999998866543 222223332111 110 2 3478888886532
Q ss_pred --CChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcC-CcCeEE
Q 020373 94 --AHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLG-LTKSIG 170 (327)
Q Consensus 94 --~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-kir~iG 170 (327)
.+.+.+.+....-.+.|.-.-+|++.+--.. ...++..+++.+++.+ +=-.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~------------------------~~~Ea~a~~~a~~~~~~~p~~~S 171 (612)
T PRK08645 116 GDISLEEIRREFREQIDALLEEGVDGLLLETFY------------------------DLEELLLALEAAREKTDLPIIAQ 171 (612)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEccC------------------------CHHHHHHHHHHHHHhCCCcEEEE
Confidence 3567777777777777755669999998542 2566666777777665 222344
Q ss_pred ecCCCh------HHHHHHHhhC-CCCCcccccccCc-ccchHHHHHHHHh-cCCEEEEeccCCCCCCCCCCCCcCChHHH
Q 020373 171 LSNFSC------KKIDTILTFA-TIPPSINQVEMHP-VWQQRKLREFCKV-KGMNVTAYSPLGAVGTRWGSNQVMENEAL 241 (327)
Q Consensus 171 vs~~~~------~~l~~~~~~~-~~~~~~~q~~~~~-~~~~~~l~~~~~~-~gi~via~~~l~~~G~l~~~~~~~~~~~l 241 (327)
++..+. ..++++++.. ..++..+-+|+.. ...-..+++.... .++.+++| |-+ |...... ...
T Consensus 172 f~~~~~g~l~~G~~~~~~~~~~~~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vy-pNa--G~~~~~~----~~~- 243 (612)
T PRK08645 172 VAFHEDGVTQNGTSLEEALKELVAAGADVVGLNCGLGPYHMLEALERIPIPENAPLSAY-PNA--GLPEYVD----GRY- 243 (612)
T ss_pred EEECCCCeeCCCCCHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEE-ECC--CCCCCCC----Ccc-
Confidence 442221 1133333221 2335666667663 2221344444443 25666665 333 2211000 000
Q ss_pred HHHHHHhCCC---HHHHHHHHHHhcCcEEEeCC--CCHHHHHHhhcccc
Q 020373 242 KQIAEAHGKT---VAQVSLRWIVEQGVTVVVRS--LNPERLKQNLGIFD 285 (327)
Q Consensus 242 ~~la~~~g~s---~aq~al~~~l~~~~~~i~g~--~~~~~l~enl~a~~ 285 (327)
.+..+ .++.+..|.-. |+.+|=|+ .+|+|+++..+.++
T Consensus 244 -----~~~~~p~~~~~~~~~~~~~-Ga~iiGGCCgt~P~hI~~la~~l~ 286 (612)
T PRK08645 244 -----VYSANPEYFAEYALEFVEQ-GVRLIGGCCGTTPEHIRAMARALK 286 (612)
T ss_pred -----ccCCCHHHHHHHHHHHHHh-CCCEEeEecCCCHHHHHHHHHHhc
Confidence 01112 36677788665 77777665 78888888777665
No 81
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=46.79 E-value=1.9e+02 Score=25.44 Aligned_cols=103 Identities=8% Similarity=0.145 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhC---------CCHHHHHHHHHHhcC-cEEEeCCCC
Q 020373 204 RKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHG---------KTVAQVSLRWIVEQG-VTVVVRSLN 273 (327)
Q Consensus 204 ~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g---------~s~aq~al~~~l~~~-~~~i~g~~~ 273 (327)
+++.+..++.||..++++.+.. -.....+..+|++.| .+..++ +.++ ..| .++|+.+..
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s---------~~qr~~~e~vc~~~gl~~~~PLW~~d~~~l-~e~i-~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIES---------NYQKSRIDKVCRELGLKSIAPLWHADPEKL-MYEV-AEKFEVIIVSVSA 143 (222)
T ss_pred HHHHHHHHHcCCCEEEECcccc---------HHHHHHHHHHHHHcCCEEeccccCCCHHHH-HHHH-HcCCeEEEEEEcc
Confidence 4566667777887777666643 112456677777765 355565 4654 778 555555543
Q ss_pred HHHHHHhhcccccccCHHHHHHHHhhhccCC--CCCc-----cccCCCCCCCCc
Q 020373 274 PERLKQNLGIFDWELTDDDYDKINQIAQRRL--IPSD-----FLISPHGPFKTP 320 (327)
Q Consensus 274 ~~~l~enl~a~~~~Lt~~~~~~i~~~~~~~~--~~~~-----~~~~~~~~~~~~ 320 (327)
..|.+. .+...|+++.+++|.++.+++. ..|+ .++-+-|.|+.+
T Consensus 144 -~gL~~~--~LGr~id~~~~~~L~~l~~~~gid~~GEgGEyhT~V~d~PlF~~~ 194 (222)
T TIGR00289 144 -MGLDES--WLGRRIDKECIDDLKRLNEKYGIHLAFEGGEAETLVLDAPLFKKR 194 (222)
T ss_pred -CCCChH--HcCCccCHHHHHHHHHHHhhcCccccCCCceEEEEEEeccccCcc
Confidence 234433 2346899999999988766543 2232 244444666654
No 82
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=46.58 E-value=29 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 020373 240 ALKQIAEAHGKTVAQVSLRWIVE 262 (327)
Q Consensus 240 ~l~~la~~~g~s~aq~al~~~l~ 262 (327)
.+.+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 36789999999999999999863
No 83
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=45.84 E-value=1.3e+02 Score=27.03 Aligned_cols=87 Identities=17% Similarity=0.076 Sum_probs=57.0
Q ss_pred ccccccCccCCChH-HHHHHHHHHHHcCCCEEeCCCCcC----CHHHHHHHHHHHHhc-CCCCCCCceEEeecCCCCCCC
Q 020373 22 VIGLGCGVGKSNLN-ALKLAVLEAIKLGYRHFDTAAIYG----TEKALGEAIAEALRL-GLVTSREQLFITSKLWCHNAH 95 (327)
Q Consensus 22 ~lglG~~~~~~~~~-~~~~~l~~A~e~Gin~fDTA~~Yg----sE~~lG~aL~~~~~~-~~~~~R~~~~I~tK~~~~~~~ 95 (327)
++++=+.. ++++ +...+.+.|.++|..|+=|+.-|+ +.+.+ +.+++..++ + ...+ +--|....-.+
T Consensus 135 KVIlEt~~--L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv-~lm~~~i~~~~---~~~~--vgIKAsGGIrt 206 (257)
T PRK05283 135 KVIIETGE--LKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAA-RIMLEVIRDMG---VAKT--VGFKPAGGVRT 206 (257)
T ss_pred EEEEeccc--cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHHHhcc---cCCC--eeEEccCCCCC
Confidence 34444444 3555 478889999999999999999996 22221 333333110 1 0122 45566555567
Q ss_pred hhhHHHHHHHHHHHhCCCccc
Q 020373 96 HDRVIPAIKKSLSALQMEYLD 116 (327)
Q Consensus 96 ~~~i~~~~~~SL~rLg~d~iD 116 (327)
.+...+-++.--+.||.++++
T Consensus 207 ~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 207 AEDAAQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHHHHHhChhhcC
Confidence 788999999999999998876
No 84
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=45.61 E-value=92 Score=29.12 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEEe
Q 020373 154 WEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTAY 220 (327)
Q Consensus 154 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~ 220 (327)
++.+.+|++...+. +.|=+.++...+..+++... ..++|....-.- .-.++.+.|+.+|+.++.+
T Consensus 211 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a--~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 211 IEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRA--VDILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred HHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 56677888877766 66777788888888887654 346666655432 2367899999999997764
No 85
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=44.81 E-value=2.8e+02 Score=26.25 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcC-CcCeEEecCCChHH
Q 020373 100 IPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLG-LTKSIGLSNFSCKK 178 (327)
Q Consensus 100 ~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-kir~iGvs~~~~~~ 178 (327)
+..+-+.|.++|+++|.+- +|... +.-++.++.+.+.+ ..+-.+++....+.
T Consensus 25 k~~ia~~L~~~Gv~~IEvG---~p~~~------------------------~~~~e~i~~i~~~~~~~~i~~~~r~~~~d 77 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG---IPAMG------------------------EEERAVIRAIVALGLPARLMAWCRARDAD 77 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe---CCCCC------------------------HHHHHHHHHHHHcCCCcEEEEEcCCCHHH
Confidence 4555666999999998874 33211 22366677777664 36666777667778
Q ss_pred HHHHHhhCCCCCcccccccCcccc--------h------HHHHHHHHhcCCEEEE
Q 020373 179 IDTILTFATIPPSINQVEMHPVWQ--------Q------RKLREFCKVKGMNVTA 219 (327)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~~~--------~------~~l~~~~~~~gi~via 219 (327)
++.+.+. +.+...+-++.+.... + .+.+++++++|..+..
T Consensus 78 i~~a~~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 78 IEAAARC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred HHHHHcC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 8877764 3332222222222111 1 3578889999987653
No 86
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=44.78 E-value=50 Score=30.18 Aligned_cols=106 Identities=18% Similarity=0.308 Sum_probs=61.2
Q ss_pred CCcCeEEecCCChHHHHHHHhhCC--CCCcccccccCccc-----chHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcC
Q 020373 164 GLTKSIGLSNFSCKKIDTILTFAT--IPPSINQVEMHPVW-----QQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVM 236 (327)
Q Consensus 164 Gkir~iGvs~~~~~~l~~~~~~~~--~~~~~~q~~~~~~~-----~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~ 236 (327)
+++-.+-=++++.+..+++.+... ++-... ..+|-.+ ++..+.+++++-++-++. |+ ....
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~-~~~nTIC~aT~~RQ~a~~~La~~vD~miVI----Gg-------~~Ss 222 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEG-PVFNTICYATQNRQEAARELAKEVDAMIVI----GG-------KNSS 222 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE--SCC-S--CHHHHHHHHHHHHHCCSSEEEEE----S--------TT-H
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccC-CCCCCCCHhHHHHHHHHHHHHhhCCEEEEe----cC-------CCCc
Confidence 366666666666666555544332 111111 1223333 346678888887776665 32 2223
Q ss_pred ChHHHHHHHHHhCC------CHHHHHHHHHHhcC-cEEEeCCCCHHHHHHhh
Q 020373 237 ENEALKQIAEAHGK------TVAQVSLRWIVEQG-VTVVVRSLNPERLKQNL 281 (327)
Q Consensus 237 ~~~~l~~la~~~g~------s~aq~al~~~l~~~-~~~i~g~~~~~~l~enl 281 (327)
.-..|.++|++++. ++.++...|.-... +.+..|+|+|+.+-+.+
T Consensus 223 NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 223 NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 45789999999874 68999999999887 88889999999877654
No 87
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=44.76 E-value=49 Score=24.06 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEec
Q 020373 157 MEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 157 l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~ 221 (327)
++++++.||+. +| ..+..++++..+...+++--+... ...+.+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-Ec-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45667777654 34 445566666666555555444443 223678889999999997655
No 88
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=44.67 E-value=77 Score=27.43 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=24.6
Q ss_pred CCcCeEEec-CCChHHHHHHHhhCCCCCcccccccC
Q 020373 164 GLTKSIGLS-NFSCKKIDTILTFATIPPSINQVEMH 198 (327)
Q Consensus 164 Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~~q~~~~ 198 (327)
+.++.+||. |-+++.+.++++..+ +.++|++-.
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~~~--~d~vQLHG~ 84 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSNTS--INTIQLHGT 84 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhCC--CCEEEECCC
Confidence 568889996 677888888887654 458887743
No 89
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=44.55 E-value=83 Score=27.40 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHH--HHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYG-TEKALG--EAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLS 108 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~Yg-sE~~lG--~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~ 108 (327)
.++++.....+.|.++|..++=|+.-|+ ....++ +.+++. -+++ +-.|....-.+.+...+-++.--.
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~-------v~~~--v~IKaaGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNT-------VGDT--IGVKASGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHH-------hccC--CeEEEeCCCCCHHHHHHHHHHhhH
Confidence 4567778899999999999999998886 111111 334433 1222 344443333467888888888899
Q ss_pred HhCCCc
Q 020373 109 ALQMEY 114 (327)
Q Consensus 109 rLg~d~ 114 (327)
|+|++.
T Consensus 200 riGts~ 205 (211)
T TIGR00126 200 RIGASA 205 (211)
T ss_pred HhCcch
Confidence 999875
No 90
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=43.73 E-value=79 Score=25.69 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=47.9
Q ss_pred CcCeEEecCCChHH----HHHHHhhCCCCCcccccccCcccch----------HHHHHHHHhcCCEEEEeccCCCCCCCC
Q 020373 165 LTKSIGLSNFSCKK----IDTILTFATIPPSINQVEMHPVWQQ----------RKLREFCKVKGMNVTAYSPLGAVGTRW 230 (327)
Q Consensus 165 kir~iGvs~~~~~~----l~~~~~~~~~~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~via~~~l~~~G~l~ 230 (327)
.+...|++..+... +...+...+.+.+++++--|...+. ..+++.+++++..++..++... ....
T Consensus 38 ~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~~-~~~~ 116 (177)
T cd01822 38 TVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQAP-PNYG 116 (177)
T ss_pred EEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC-Cccc
Confidence 46777888776543 3344444445566677776654321 5678889888998887654321 1000
Q ss_pred CCCCcCChHHHHHHHHHhCCCH
Q 020373 231 GSNQVMENEALKQIAEAHGKTV 252 (327)
Q Consensus 231 ~~~~~~~~~~l~~la~~~g~s~ 252 (327)
......-.+.++++|+++++..
T Consensus 117 ~~~~~~~~~~~~~~a~~~~~~~ 138 (177)
T cd01822 117 PRYTRRFAAIYPELAEEYGVPL 138 (177)
T ss_pred hHHHHHHHHHHHHHHHHcCCcE
Confidence 0000111355666666666543
No 91
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=43.24 E-value=2.7e+02 Score=26.68 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccc---hHHHHHHHHhcCCEEEEeccCCC
Q 020373 151 KGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQ---QRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 151 ~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~via~~~l~~ 225 (327)
...+..++.+.+.+.++.+-+...+.+.++++++. ..+.+++..+-|+... -+++.+.|+++|+.++.=..++.
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 45566666665556566666655567777777642 3444555556666543 27789999999999987766543
No 92
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=43.14 E-value=3.5e+02 Score=26.98 Aligned_cols=141 Identities=8% Similarity=0.068 Sum_probs=72.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhcc
Q 020373 58 YGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGM 137 (327)
Q Consensus 58 YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~ 137 (327)
+|+++.|-++|++..+.. +.+-++|.|-+. ++-|-..++...++++.+ +.++.++.|.......
T Consensus 67 ~G~~ekL~~aI~~~~~~~---~P~~I~V~sTC~-----seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~------- 130 (519)
T PRK02910 67 RGTAELLKDTLRRADERF---QPDLIVVGPSCT-----AELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKEN------- 130 (519)
T ss_pred CChHHHHHHHHHHHHHhc---CCCEEEEeCCcH-----HHHhccCHHHHHHHhCCC-CCEEEEecCCcccccc-------
Confidence 457777778887664322 344567777652 222333333444445543 6799999886543210
Q ss_pred CCCCCCCCCCCCHHHHHHHHH-HHH-----------HcCCcCeEEecCC------ChHHHHHHHhhCCCCCccc------
Q 020373 138 SLPNKEDLSPLDYKGVWEAME-ESQ-----------RLGLTKSIGLSNF------SCKKIDTILTFATIPPSIN------ 193 (327)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~-~l~-----------~~Gkir~iGvs~~------~~~~l~~~~~~~~~~~~~~------ 193 (327)
...+.++..+- .+. +.++|-=||.++. +..++.++++..++.+..+
T Consensus 131 ----------~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s 200 (519)
T PRK02910 131 ----------WAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGAS 200 (519)
T ss_pred ----------hHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 11223333322 221 2345777787542 3467888888777553221
Q ss_pred --------ccccCccc-ch--HHHHHHHH-hcCCEEEEeccCC
Q 020373 194 --------QVEMHPVW-QQ--RKLREFCK-VKGMNVTAYSPLG 224 (327)
Q Consensus 194 --------q~~~~~~~-~~--~~l~~~~~-~~gi~via~~~l~ 224 (327)
...+|+.. ++ ..+.++.+ +.|++++...|++
T Consensus 201 ~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 201 PADLKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred HHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhCCccccccccc
Confidence 11122221 11 22334443 5689888777775
No 93
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=41.81 E-value=2.5e+02 Score=24.95 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcC-CcCeEEecCCChH
Q 020373 99 VIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLG-LTKSIGLSNFSCK 177 (327)
Q Consensus 99 i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-kir~iGvs~~~~~ 177 (327)
-+..+-+.|.++|+++|.+-+ |... +.-++.++.+.+.+ .++..+.+....+
T Consensus 21 ~k~~i~~~L~~~Gv~~iE~g~---p~~~------------------------~~~~e~~~~l~~~~~~~~~~~~~r~~~~ 73 (259)
T cd07939 21 EKLAIARALDEAGVDEIEVGI---PAMG------------------------EEEREAIRAIVALGLPARLIVWCRAVKE 73 (259)
T ss_pred HHHHHHHHHHHcCCCEEEEec---CCCC------------------------HHHHHHHHHHHhcCCCCEEEEeccCCHH
Confidence 455566669999999999852 3110 22255667776643 4666777766777
Q ss_pred HHHHHHhhCCCCCcccccccCccc--------ch------HHHHHHHHhcCCEEEE
Q 020373 178 KIDTILTFATIPPSINQVEMHPVW--------QQ------RKLREFCKVKGMNVTA 219 (327)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~--------~~------~~l~~~~~~~gi~via 219 (327)
.++.+.+. +++..-+-+..+... ++ ...+++|+++|+.+..
T Consensus 74 ~v~~a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 74 DIEAALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHHHHHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 88877764 333222222222221 01 3578899999997653
No 94
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=41.75 E-value=95 Score=31.10 Aligned_cols=76 Identities=21% Similarity=0.128 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccC
Q 020373 148 LDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 148 ~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l 223 (327)
.+++++.+.+.+.++..+|+.+|+-.+...++..+++..+++++.+--.+.-+...-.-++..-..|.-+..-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcH
Confidence 5688899999999999999999999999999999999888875544223322222233445555555555554444
No 95
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=41.59 E-value=2.3e+02 Score=25.19 Aligned_cols=130 Identities=17% Similarity=0.204 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCC--ceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccC
Q 020373 61 EKALGEAIAEALRLGLVTSRE--QLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMS 138 (327)
Q Consensus 61 E~~lG~aL~~~~~~~~~~~R~--~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 138 (327)
..++.++++.... .+. .+.++..+.+.......+...+.+-+++.+++.- -+.+--- ....
T Consensus 69 ~~v~~~a~~~~~~-----~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEit-E~~~---------- 131 (256)
T COG2200 69 RWVLEEACRQLRT-----WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RLVLEIT-ESAL---------- 131 (256)
T ss_pred HHHHHHHHHHHHh-----hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eEEEEEe-Cchh----------
Confidence 4556666665421 122 3677777655444445677788888888886543 2222211 1100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCCh--HHHHHHHhhCCCCCcccccccCccc--------ch--HHH
Q 020373 139 LPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSC--KKIDTILTFATIPPSINQVEMHPVW--------QQ--RKL 206 (327)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~--------~~--~~l 206 (327)
..+...+...+..|++.| + .|.+..|.. ..+..+.+ ++++.+-+.-+... .. +.+
T Consensus 132 --------~~~~~~~~~~l~~L~~~G-~-~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 132 --------IDDLDTALALLRQLRELG-V-RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred --------hcCHHHHHHHHHHHHHCC-C-eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHH
Confidence 012356788999999999 3 477777763 23444433 33333333322221 11 568
Q ss_pred HHHHHhcCCEEEEe
Q 020373 207 REFCKVKGMNVTAY 220 (327)
Q Consensus 207 ~~~~~~~gi~via~ 220 (327)
+..|++.|+.++|-
T Consensus 199 v~la~~l~~~vvaE 212 (256)
T COG2200 199 VALAHKLGLTVVAE 212 (256)
T ss_pred HHHHHHCCCEEEEe
Confidence 99999999999983
No 96
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=41.36 E-value=1.3e+02 Score=28.36 Aligned_cols=68 Identities=6% Similarity=0.012 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCcc---cchHHHHHHHHhcCCEEEEeccC
Q 020373 154 WEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPV---WQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 154 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~via~~~l 223 (327)
++.+.+|+++..+. +.|-+.++...+..+++...++ ++|+..... ..-.++..+|+++|+.++..+.+
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d--~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~ 299 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGAAD--VFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML 299 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCC--eEEEeecccCCHHHHHHHHHHHHHcCCceeecCcc
Confidence 56677777765555 5566666777777777655433 455544332 22256788888888887765433
No 97
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=40.98 E-value=1.1e+02 Score=29.57 Aligned_cols=80 Identities=9% Similarity=0.056 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch---HHHHHHHHhcCCEEEEeccCCCC
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ---RKLREFCKVKGMNVTAYSPLGAV 226 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~via~~~l~~~ 226 (327)
+..++..++.+.++.-|....+-.-+...+.+++.....+.+.+..+-||...- ..+.+.|+++|+-++.=+.|+.
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat- 190 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT- 190 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-
Confidence 577888999998887777777766666566655543345677888899988763 7789999999999999888876
Q ss_pred CCCC
Q 020373 227 GTRW 230 (327)
Q Consensus 227 G~l~ 230 (327)
+.+.
T Consensus 191 P~~q 194 (396)
T COG0626 191 PVLQ 194 (396)
T ss_pred cccc
Confidence 4443
No 98
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=40.77 E-value=2.3e+02 Score=24.62 Aligned_cols=90 Identities=9% Similarity=0.089 Sum_probs=54.4
Q ss_pred ccCccCCChHHHHHHHHHHHHc-----CCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCC---------
Q 020373 26 GCGVGKSNLNALKLAVLEAIKL-----GYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWC--------- 91 (327)
Q Consensus 26 G~~~~~~~~~~~~~~l~~A~e~-----Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~--------- 91 (327)
|+...+.++++....++.|++. |+|--=.+....++..+...++..- .|.-+||-++..+
T Consensus 65 ~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~------~~gl~FvDS~T~~~s~a~~~A~ 138 (213)
T PF04748_consen 65 GALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLK------ERGLFFVDSRTTPRSVAPQVAK 138 (213)
T ss_dssp T-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHH------HTT-EEEE-S--TT-SHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHH------HcCCEEEeCCCCcccHHHHHHH
Confidence 3333336788899999999875 5444333333336777877777652 4555777455421
Q ss_pred --------------CCCChhhHHHHHHHHHHHhCCCccceeEee
Q 020373 92 --------------HNAHHDRVIPAIKKSLSALQMEYLDLYLIH 121 (327)
Q Consensus 92 --------------~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH 121 (327)
...+.+.|++++++..+.-+..--=+...|
T Consensus 139 ~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 139 ELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp HCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 235678899999999888777766677777
No 99
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=40.69 E-value=2.3e+02 Score=26.35 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=30.2
Q ss_pred HHHHHHHHHHH-HcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 020373 35 NALKLAVLEAI-KLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKL 89 (327)
Q Consensus 35 ~~~~~~l~~A~-e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~ 89 (327)
.++.+++...+ +.+.+.|=|=..==.-.-++..|+..++.+++ ++.|+|=.
T Consensus 43 ~~A~~i~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~V----D~iVtTga 94 (316)
T PRK02301 43 AEAVDIYEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGHI----DVLVTTGA 94 (316)
T ss_pred HHHHHHHHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCCe----eEEEcCCC
Confidence 56777888887 56766553111100345577888887666543 55566543
No 100
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=40.67 E-value=76 Score=31.41 Aligned_cols=129 Identities=19% Similarity=0.111 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCCEE--eCCCCc---C-------CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCC-hhh-------
Q 020373 39 LAVLEAIKLGYRHF--DTAAIY---G-------TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAH-HDR------- 98 (327)
Q Consensus 39 ~~l~~A~e~Gin~f--DTA~~Y---g-------sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~-~~~------- 98 (327)
+-++...+.|+..+ =||.+| | .-+.+..+-++.+... -+-++||++=++.-... |..
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~---L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD---LAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS----TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC---CcceEEEEecccccccchHHHHHhcCce
Confidence 34667778899988 477766 2 2345556666655433 57789999988643210 000
Q ss_pred ---HHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCC
Q 020373 99 ---VIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFS 175 (327)
Q Consensus 99 ---i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~ 175 (327)
++-.-.+.-+|+.+.|+|.+. .+++++++..++.+++|+...||+-..-
T Consensus 183 ~l~vEvd~~ri~kR~~~g~ld~~~----------------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ 234 (546)
T PF01175_consen 183 GLIVEVDPSRIEKRLEQGYLDEVT----------------------------DDLDEALARAKEARAKKEPLSIGLLGNA 234 (546)
T ss_dssp EEEEES-HHHHHHHHHTTSSSEEE----------------------------SSHHHHHHHHHHHHHTT--EEEEEES-H
T ss_pred EEEEEECHHHHHHHHhCCCeeEEc----------------------------CCHHHHHHHHHHhhccCCeeEEEEeccH
Confidence 000123445688889999754 1379999999999999999999999888
Q ss_pred hHHHHHHHhhCC-CCCcccccccC
Q 020373 176 CKKIDTILTFAT-IPPSINQVEMH 198 (327)
Q Consensus 176 ~~~l~~~~~~~~-~~~~~~q~~~~ 198 (327)
.+.++++++..- ++...-|...+
T Consensus 235 ad~~~~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 235 ADLWEELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp HHHHHHHHHTT---SEE---SSTT
T ss_pred HHHHHHHHHcCCCCCcccCCCccc
Confidence 888999988643 23344466553
No 101
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.19 E-value=3.7e+02 Score=26.37 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCEEe--------CCCCcC-------CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHH
Q 020373 38 KLAVLEAIKLGYRHFD--------TAAIYG-------TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPA 102 (327)
Q Consensus 38 ~~~l~~A~e~Gin~fD--------TA~~Yg-------sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~ 102 (327)
.++++.|+|+|-=-+- |...|. .+++.+.++.-. + .+..+.-+|.. ......+.+.
T Consensus 185 aallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va-~-----ag~~iLqst~d---~~egaa~L~~ 255 (579)
T COG3653 185 AALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVA-R-----AGGRILQSTHD---RDEGAAALEA 255 (579)
T ss_pred HHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHH-H-----hcCceeEeecc---ccchHHHHHH
Confidence 5788999999877666 677775 366666666432 1 33444444432 2234567778
Q ss_pred HHHHHHHhC-CCccceeEeecCC
Q 020373 103 IKKSLSALQ-MEYLDLYLIHWPI 124 (327)
Q Consensus 103 ~~~SL~rLg-~d~iDl~~lH~p~ 124 (327)
++++-+.-+ ...+-+.+.|.-+
T Consensus 256 l~~a~ri~~R~~~vr~v~s~~a~ 278 (579)
T COG3653 256 LLEASRIGNRRKGVRMVMSHSAD 278 (579)
T ss_pred HHHHHHhcCcccCceEEEecccc
Confidence 888877774 3457889999653
No 102
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=40.18 E-value=3.2e+02 Score=25.63 Aligned_cols=136 Identities=13% Similarity=0.174 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCC
Q 020373 95 HHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNF 174 (327)
Q Consensus 95 ~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~ 174 (327)
+++.+.+.++.. ...|...+.+..-+.|+ ...+.+.+.++.++++.- ++-+..+
T Consensus 80 ~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-----------------------~~~~~~~e~i~~Ik~~~p--~i~i~~~ 133 (351)
T TIGR03700 80 SLEEIVARVKEA-YAPGATEVHIVGGLHPN-----------------------LPFEWYLDMIRTLKEAYP--DLHVKAF 133 (351)
T ss_pred CHHHHHHHHHHH-HHCCCcEEEEecCCCCC-----------------------CCHHHHHHHHHHHHHHCC--CceEEeC
Confidence 556666666543 45788777765433331 124566677777777642 4455556
Q ss_pred ChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHH
Q 020373 175 SCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQ 254 (327)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq 254 (327)
++.++..+....+. ..++.+...++.|+..+... | .+.+.++.+..++.. +.+..+
T Consensus 134 ~~~ei~~~~~~~g~-------------~~~e~l~~LkeAGld~~~~~-----g-----~E~~~~~v~~~i~~~-~~~~~~ 189 (351)
T TIGR03700 134 TAVEIHHFSKISGL-------------PTEEVLDELKEAGLDSMPGG-----G-----AEIFAEEVRQQICPE-KISAER 189 (351)
T ss_pred CHHHHHHHHHHcCC-------------CHHHHHHHHHHcCCCcCCCC-----c-----ccccCHHHHhhcCCC-CCCHHH
Confidence 66665554433221 23567777888888765421 1 123334455555443 345555
Q ss_pred --HHHHHHHhcC----cEEEeCCC-CHHHHHHh
Q 020373 255 --VSLRWIVEQG----VTVVVRSL-NPERLKQN 280 (327)
Q Consensus 255 --~al~~~l~~~----~~~i~g~~-~~~~l~en 280 (327)
-+++++...| ...++|.. +.++..+.
T Consensus 190 ~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~ 222 (351)
T TIGR03700 190 WLEIHRTAHELGLKTNATMLYGHIETPAHRVDH 222 (351)
T ss_pred HHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHH
Confidence 3778877777 55677763 44444333
No 103
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.32 E-value=85 Score=27.17 Aligned_cols=61 Identities=8% Similarity=0.081 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCcCeEEecCCC-hHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEE
Q 020373 152 GVWEAMEESQRLGLTKSIGLSNFS-CKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 152 ~~~~~l~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via 219 (327)
+..+.+++++++..=-.||..+.- .++++++++..- + +-.+|. -+.+++++|+++||.++.
T Consensus 41 ~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~-----FivSP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 41 AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-R-----FIVSPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-C-----EEECCC-CCHHHHHHHHHcCCCEeC
Confidence 355666777665433458887665 777888877542 2 222332 236899999999999885
No 104
>PLN02428 lipoic acid synthase
Probab=39.14 E-value=3.4e+02 Score=25.66 Aligned_cols=168 Identities=12% Similarity=0.140 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHHHcCCCEEe-----CC--CCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHFD-----TA--AIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIK 104 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fD-----TA--~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~ 104 (327)
.+.++..++.+.+.+.|++++= +. +..|.+ .+.+.++...+.. ..+.|..= ..++..+ +
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~-----P~i~Ie~L--~pdf~~d------~ 195 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLK-----PEILVEAL--VPDFRGD------L 195 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhC-----CCcEEEEe--CccccCC------H
Confidence 3556667788888888998662 11 233322 3344454431111 12333321 1222111 3
Q ss_pred HHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHc--CCcC----eEEecCCChHH
Q 020373 105 KSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRL--GLTK----SIGLSNFSCKK 178 (327)
Q Consensus 105 ~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Gkir----~iGvs~~~~~~ 178 (327)
+.|++|.-.-+|. +-|++.. .+ ...+. .++ .....++.++.++.+++. |..- -+|+ .-+.++
T Consensus 196 elL~~L~eAG~d~-i~hnlET-v~--rL~~~--Ir~-----~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Ed 263 (349)
T PLN02428 196 GAVETVATSGLDV-FAHNIET-VE--RLQRI--VRD-----PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEE 263 (349)
T ss_pred HHHHHHHHcCCCE-EccCccC-cH--HHHHH--hcC-----CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHH
Confidence 3444443334666 4466643 11 01110 000 123578899999999998 7543 2466 345555
Q ss_pred HHHHHhhC---CCCC---------cccccccCcccch---HHHHHHHHhcCCEEEEeccCCC
Q 020373 179 IDTILTFA---TIPP---------SINQVEMHPVWQQ---RKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 179 l~~~~~~~---~~~~---------~~~q~~~~~~~~~---~~l~~~~~~~gi~via~~~l~~ 225 (327)
+.+.++.. +++. .-..++++.+..+ ..+-+++.+.|...++.+||-.
T Consensus 264 v~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 264 VVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 55554432 2221 2222233333333 4567788899999999999864
No 105
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=39.03 E-value=1e+02 Score=24.31 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEE
Q 020373 151 KGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 151 ~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via 219 (327)
..++..|.-.++.|++. .| ..+..++++......+++--..++..-...+..+|++++|+++-
T Consensus 16 ~ki~~lL~la~ragklv-~G-----~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~ 78 (122)
T PRK04175 16 EKALEAVEKARDTGKIK-KG-----TNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVY 78 (122)
T ss_pred HHHHHHHHHHHHcCCEe-Ec-----HHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 55788889999999876 45 45667777777766666655555433235688899999999754
No 106
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=38.86 E-value=2.8e+02 Score=24.62 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHH--HHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHh
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYGTEKA--LGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSAL 110 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~--lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rL 110 (327)
+.++..+.++.+.+.|++.|-.--.-..++. .=+++++. -.+++.|.-..+ ...+.+...+-+ +.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-------~g~~~~l~vDan-~~~~~~~a~~~~-~~l~~~ 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-------VGDDAELRVDAN-RGWTPKQAIRAL-RALEDL 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCC-CCcCHHHHHHHH-HHHHhc
Confidence 4466667778888999998864321111222 11334432 223445544442 223333322222 334444
Q ss_pred CCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCC
Q 020373 111 QMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIP 189 (327)
Q Consensus 111 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~ 189 (327)
++.++..|-.. +-++.+.++++.-.+. ..|=+-++...+.++++...+
T Consensus 156 -----~i~~iEeP~~~-------------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~- 204 (265)
T cd03315 156 -----GLDYVEQPLPA-------------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAA- 204 (265)
T ss_pred -----CCCEEECCCCc-------------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCC-
Confidence 44556666321 1245667777766555 455666778888888876544
Q ss_pred CcccccccCccc---chHHHHHHHHhcCCEEEEeccCC
Q 020373 190 PSINQVEMHPVW---QQRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 190 ~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~l~ 224 (327)
+++|+.....- .-.++.+.|+++|+.++.++.+.
T Consensus 205 -d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~ 241 (265)
T cd03315 205 -DAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIE 241 (265)
T ss_pred -CEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccc
Confidence 46666655432 23678999999999999876654
No 107
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=38.81 E-value=3.9e+02 Score=26.23 Aligned_cols=117 Identities=17% Similarity=0.066 Sum_probs=65.1
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCC-CCceEEeecCCCCCCChhhHHHHHHHHHHHhC---CC--ccceeEeecCCCCC
Q 020373 54 TAAIYGTEKALGEAIAEALRLGLVTS-REQLFITSKLWCHNAHHDRVIPAIKKSLSALQ---ME--YLDLYLIHWPISAK 127 (327)
Q Consensus 54 TA~~YgsE~~lG~aL~~~~~~~~~~~-R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg---~d--~iDl~~lH~p~~~~ 127 (327)
..-.||.|+.|-++|++..+.. + .+-++|.|-+. ...--+.+..-+++.-++++ .. .+.++.+|.|+...
T Consensus 70 ~d~VfGg~~~L~~ai~~~~~~~---~~p~~i~v~ttc~-~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g 145 (461)
T TIGR02931 70 DGAVFGALDRVEEAVDVLLTRY---PDVKVVPIITTCS-TEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVG 145 (461)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCch-HHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCC
Confidence 3345788888889998765432 3 34466777653 22223455555555555542 11 35789999887654
Q ss_pred CCCchhhhccCCCCCCCCCCCCHHHHHHHHH-HHHH----cCCcCeEEecC--CChHHHHHHHhhCCCCCc
Q 020373 128 PTSEEEEVGMSLPNKEDLSPLDYKGVWEAME-ESQR----LGLTKSIGLSN--FSCKKIDTILTFATIPPS 191 (327)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~----~Gkir~iGvs~--~~~~~l~~~~~~~~~~~~ 191 (327)
.. . ..+..+++++- .+.. +++|--||-.+ -+.+++.++++..++.+.
T Consensus 146 s~--~---------------~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 146 SM--I---------------TGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred cH--H---------------HHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 21 0 11233343333 2222 35677777433 245678888888776543
No 108
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.80 E-value=3.3e+02 Score=25.47 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCC
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTA 55 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA 55 (327)
.+.++..++++..-++||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 467888999999999999999984
No 109
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=38.71 E-value=1e+02 Score=25.99 Aligned_cols=94 Identities=6% Similarity=-0.100 Sum_probs=53.0
Q ss_pred HHHcCCcCeEEecCCChHHH----HHHHhhCCCCCcccccccCcccch----------HHHHHHHHhcCCEEEEeccCCC
Q 020373 160 SQRLGLTKSIGLSNFSCKKI----DTILTFATIPPSINQVEMHPVWQQ----------RKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 160 l~~~Gkir~iGvs~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~via~~~l~~ 225 (327)
+.+...|...|++..+...+ .+.+...+.+.+++++-.|-..+. +.+++.+++++..++...+...
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 44556799999999886543 333333345667778887775331 4678889988876655432110
Q ss_pred CCCCCCCCCcCChHHHHHHHHHhCCCHHH
Q 020373 226 VGTRWGSNQVMENEALKQIAEAHGKTVAQ 254 (327)
Q Consensus 226 ~G~l~~~~~~~~~~~l~~la~~~g~s~aq 254 (327)
..........-.+.++++|+++++....
T Consensus 120 -~~~~~~~~~~~~~~~~~~a~~~~v~~id 147 (191)
T PRK10528 120 -ANYGRRYNEAFSAIYPKLAKEFDIPLLP 147 (191)
T ss_pred -CcccHHHHHHHHHHHHHHHHHhCCCccH
Confidence 0000000001124467778887766544
No 110
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=38.69 E-value=1.2e+02 Score=28.05 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEEeccCC
Q 020373 152 GVWEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 152 ~~~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~l~ 224 (327)
+-++.+.++++.-.+. +.|-|.++...+..+++...+ +++|....-.- .-.++...|+.+|+.++..+.+.
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~e 284 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNV--KVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLE 284 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEc
Confidence 3467788888876665 668888889999998876654 36666554432 23678999999999999876554
No 111
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=38.52 E-value=4e+02 Score=26.32 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCC
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQM 112 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~ 112 (327)
+++-....++.|.++||..|=..+.-.-.+.+-.+++...+.|. .-.+.|+-.. .+.++.+...+.+++ +..+|.
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~---~~~~~i~yt~-sp~~t~~y~~~~a~~-l~~~Ga 177 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK---EAQLCIAYTT-SPVHTLNYYLSLVKE-LVEMGA 177 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC---EEEEEEEEEe-CCcCcHHHHHHHHHH-HHHcCC
Confidence 34666778999999999998777765534444444444322342 1123333332 233445556665555 445776
Q ss_pred CccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCCh
Q 020373 113 EYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSC 176 (327)
Q Consensus 113 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~ 176 (327)
+ .+.|-... +.....++.+-+..+++...+ .||+-.|+.
T Consensus 178 d---~I~IkDta---------------------G~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt 216 (468)
T PRK12581 178 D---SICIKDMA---------------------GILTPKAAKELVSGIKAMTNL-PLIVHTHAT 216 (468)
T ss_pred C---EEEECCCC---------------------CCcCHHHHHHHHHHHHhccCC-eEEEEeCCC
Confidence 4 44443221 113346666666777765543 478877773
No 112
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=38.34 E-value=1.7e+02 Score=22.00 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=55.5
Q ss_pred HHHHHHHc-CCcCeEEecCCChHHHHHHHhhCCCC---------------CcccccccCcccchHHHHHHHHhcCCEEEE
Q 020373 156 AMEESQRL-GLTKSIGLSNFSCKKIDTILTFATIP---------------PSINQVEMHPVWQQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 156 ~l~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~~~~---------------~~~~q~~~~~~~~~~~l~~~~~~~gi~via 219 (327)
.+..+.+. ..+.-+|+++-+++..+.+.+..+++ .+++- .+.....+++..|-++|+.|+.
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~---tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIA---TPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEE---SSGGGHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEe---cCCcchHHHHHHHHHcCCEEEE
Confidence 34555655 56777888888877766665544432 11111 1112347789999999999999
Q ss_pred eccCCCCCCCCCCCCcCChHHHHHHHHHhCCC
Q 020373 220 YSPLGAVGTRWGSNQVMENEALKQIAEAHGKT 251 (327)
Q Consensus 220 ~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s 251 (327)
=.|++. ...+.+.+.+++++.|..
T Consensus 92 EKP~~~--------~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 92 EKPLAL--------TLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp ESSSSS--------SHHHHHHHHHHHHHHTSC
T ss_pred EcCCcC--------CHHHHHHHHHHHHHhCCE
Confidence 999975 344456777777777653
No 113
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=38.24 E-value=1e+02 Score=26.67 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCcCeEEecCCC-hHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEE
Q 020373 152 GVWEAMEESQRLGLTKSIGLSNFS-CKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 152 ~~~~~l~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via 219 (327)
...+.+++++++..=-.||..+.- .++++.+++..- ++. .+|.. +.+++++|+++||.++.
T Consensus 45 ~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi-----vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 45 VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI-----VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE-----ECCCC-CHHHHHHHHHcCCcEEC
Confidence 456667777665443568887765 778888887442 222 23322 46999999999998886
No 114
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=38.13 E-value=2.5e+02 Score=23.84 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCcCeEEecCCChHH
Q 020373 154 WEAMEESQRLGLTKSIGLSNFSCKK 178 (327)
Q Consensus 154 ~~~l~~l~~~Gkir~iGvs~~~~~~ 178 (327)
.+.+.+......++.+|++++....
T Consensus 88 ~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 88 CAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred HHHHHhhcCCcEEEEEecCChhhHH
Confidence 3334333334678899999875543
No 115
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=38.03 E-value=3.2e+02 Score=25.01 Aligned_cols=126 Identities=14% Similarity=0.191 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCC-ChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCCC
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNF-SCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGT 228 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G~ 228 (327)
.+.....++.+++.|.--.+=++.. ....+..+++..+.. .+- +...+..+.+.++..+++||.+.. .|... .
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~--~i~-H~~~l~~~~~~~~~l~~~gi~v~~-~P~sn--~ 245 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAE--RIG-HGIRAIEDPELVKRLAERNIPLEV-CPTSN--V 245 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCc--ccc-hhhccCccHHHHHHHHHcCCeEEE-CCCcc--c
Confidence 4566677788888876444433322 234555566533322 111 111112235688999999998753 44332 1
Q ss_pred CCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcCcEEEeCCCCH-----HHHHHhhcccc-cccCHHHHHHHH
Q 020373 229 RWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNP-----ERLKQNLGIFD-WELTDDDYDKIN 297 (327)
Q Consensus 229 l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~~~~i~g~~~~-----~~l~enl~a~~-~~Lt~~~~~~i~ 297 (327)
..+.. .....--++..+..|+.+.+|+.++ .-.++...+.. ..|+.+++.++.
T Consensus 246 ~l~~~----------------~~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~~~l~~~el~~~~ 304 (325)
T cd01320 246 QTGAV----------------KSLAEHPLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEAFGLTEEELKKLA 304 (325)
T ss_pred ccccc----------------CCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 11100 0011122566677787777777543 22333333322 368888766553
No 116
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=37.66 E-value=3.1e+02 Score=25.71 Aligned_cols=121 Identities=20% Similarity=0.194 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCEEeCCCC---------cC---CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHH
Q 020373 38 KLAVLEAIKLGYRHFDTAAI---------YG---TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKK 105 (327)
Q Consensus 38 ~~~l~~A~e~Gin~fDTA~~---------Yg---sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 105 (327)
.+.++...++|+|.+-..-- -| +-+.+-++++...+.|+ +.+-+-.=++-+..+.+.+++.++.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~----~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGF----ENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CEEEEEeecCCCCCCHHHHHHHHHH
Confidence 34566666779998732211 12 22233345554422232 1222222234455667788888876
Q ss_pred HHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHH-HHHHHHHHcCCcCeEEecCCCh
Q 020373 106 SLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVW-EAMEESQRLGLTKSIGLSNFSC 176 (327)
Q Consensus 106 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~Gkir~iGvs~~~~ 176 (327)
.+ +++.+++.++.+.-- +.++ +...... ..+.++.+ .+.+.|.+.|. .++++|||..
T Consensus 174 ~~-~l~~~~is~y~L~~~-~gT~------l~~~~~~-----~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 174 AK-ELPINHLSAYSLTIE-ENTP------FFEKNHK-----KKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred HH-hcCCCEEEeccceec-CCCh------hHHhhhc-----CCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 55 499999999887631 1111 0000000 01123333 45677778886 5799999864
No 117
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=37.20 E-value=1.1e+02 Score=26.40 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCCCC
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTR 229 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G~l 229 (327)
.+++.+..+.|.+.| |+.+=|+.-++..++.+......-|.+. +-..- -...+.++.|.+.|-.++. ||-..
T Consensus 19 ~~~a~~~~~al~~gG-i~~iEiT~~t~~a~~~I~~l~~~~p~~~-vGAGT-V~~~e~a~~a~~aGA~Fiv-SP~~~---- 90 (196)
T PF01081_consen 19 PEDAVPIAEALIEGG-IRAIEITLRTPNALEAIEALRKEFPDLL-VGAGT-VLTAEQAEAAIAAGAQFIV-SPGFD---- 90 (196)
T ss_dssp GGGHHHHHHHHHHTT---EEEEETTSTTHHHHHHHHHHHHTTSE-EEEES---SHHHHHHHHHHT-SEEE-ESS------
T ss_pred HHHHHHHHHHHHHCC-CCEEEEecCCccHHHHHHHHHHHCCCCe-eEEEe-ccCHHHHHHHHHcCCCEEE-CCCCC----
Confidence 356666777777766 7888887666544333221110001110 00000 0124556667777776665 33211
Q ss_pred CCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcCcEEEeCCCCHHHHHHhhcc
Q 020373 230 WGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGI 283 (327)
Q Consensus 230 ~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~~~~i~g~~~~~~l~enl~a 283 (327)
.-.++++.++++..+||+.++.++...++.
T Consensus 91 ------------------------~~v~~~~~~~~i~~iPG~~TptEi~~A~~~ 120 (196)
T PF01081_consen 91 ------------------------PEVIEYAREYGIPYIPGVMTPTEIMQALEA 120 (196)
T ss_dssp ------------------------HHHHHHHHHHTSEEEEEESSHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHHcCCcccCCcCCHHHHHHHHHC
Confidence 223566667777888888888888777654
No 118
>PLN02363 phosphoribosylanthranilate isomerase
Probab=37.02 E-value=1.2e+02 Score=27.36 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEec-C
Q 020373 95 HHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLS-N 173 (327)
Q Consensus 95 ~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs-~ 173 (327)
+++.++.+. ++|.|++-+++...-.+. .. .+..+.+.+......++.+||. |
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~---------------------Vs-~e~a~~I~~~l~~~~~~~VgVfv~ 108 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRS---------------------IS-LSVAKEISQVAREGGAKPVGVFVD 108 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCc---------------------CC-HHHHHHHHHhccccCccEEEEEeC
Confidence 345555544 499999998643321111 11 2333333333333246679985 6
Q ss_pred CChHHHHHHHhhCCCCCcccccccC
Q 020373 174 FSCKKIDTILTFATIPPSINQVEMH 198 (327)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~q~~~~ 198 (327)
-+++.+.++++... ++++|++-.
T Consensus 109 ~~~~~I~~~~~~~~--ld~VQLHG~ 131 (256)
T PLN02363 109 DDANTILRAADSSD--LELVQLHGN 131 (256)
T ss_pred CCHHHHHHHHHhcC--CCEEEECCC
Confidence 67888888887654 458888743
No 119
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=36.74 E-value=1.1e+02 Score=27.28 Aligned_cols=86 Identities=20% Similarity=0.368 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCC---------HHHHHHHHHHhcC--cEEEeCCC
Q 020373 204 RKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKT---------VAQVSLRWIVEQG--VTVVVRSL 272 (327)
Q Consensus 204 ~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s---------~aq~al~~~l~~~--~~~i~g~~ 272 (327)
.++.++|+++||.+++ +|+.. +.+..+ .++++. ..--.|+.+.+.+ +.+-.|++
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~-------------~s~d~l-~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE-------------ESVDFL-EELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH-------------HHHHHH-HHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-
T ss_pred HHHHHHHHHcCCEEEE-CCCCH-------------HHHHHH-HHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC
Confidence 6789999999999987 56632 223333 333321 1222466666665 66667999
Q ss_pred CHHHHHHhhccc---------------ccc--cCHHHHHHHHhhhccCC
Q 020373 273 NPERLKQNLGIF---------------DWE--LTDDDYDKINQIAQRRL 304 (327)
Q Consensus 273 ~~~~l~enl~a~---------------~~~--Lt~~~~~~i~~~~~~~~ 304 (327)
+.+++++.++.+ ..| +.+-.++.|..+.+.+.
T Consensus 124 tl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~ 172 (241)
T PF03102_consen 124 TLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG 172 (241)
T ss_dssp -HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC
Confidence 999999988876 222 22335566776666655
No 120
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.41 E-value=3e+02 Score=24.29 Aligned_cols=141 Identities=13% Similarity=0.016 Sum_probs=79.4
Q ss_pred eecCCCCCCCcCCcccc--ccCccCCChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceE--
Q 020373 9 SALSSSSGHRNMPVIGL--GCGVGKSNLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLF-- 84 (327)
Q Consensus 9 ~~L~~t~g~~~vs~lgl--G~~~~~~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~-- 84 (327)
++||. | +.++.|.+ |-..-| ..--..+++--++..|.+.- .|.+|..+-+.|+..-.-++ +=.+.|
T Consensus 19 krLGG--G-iP~GsL~lIEGd~~tG-KSvLsqr~~YG~L~~g~~v~----yvsTe~T~refi~qm~sl~y--dv~~~~l~ 88 (235)
T COG2874 19 KRLGG--G-IPVGSLILIEGDNGTG-KSVLSQRFAYGFLMNGYRVT----YVSTELTVREFIKQMESLSY--DVSDFLLS 88 (235)
T ss_pred hhccC--C-CccCeEEEEECCCCcc-HHHHHHHHHHHHHhCCceEE----EEEechhHHHHHHHHHhcCC--CchHHHhc
Confidence 46777 7 77766443 332221 12233556667788888865 23356677777765433233 333333
Q ss_pred -----EeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHH
Q 020373 85 -----ITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEE 159 (327)
Q Consensus 85 -----I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (327)
+.+.+.+-..++...+.-++.-++....-.-|++.+...+....-++ .....+.+..+..
T Consensus 89 G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~---------------~~~vl~fm~~~r~ 153 (235)
T COG2874 89 GRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDS---------------EDAVLNFMTFLRK 153 (235)
T ss_pred ceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhccc---------------HHHHHHHHHHHHH
Confidence 33333333444555666667777666666679999887644221110 1124556777788
Q ss_pred HHHcCCcCeEEecCC
Q 020373 160 SQRLGLTKSIGLSNF 174 (327)
Q Consensus 160 l~~~Gkir~iGvs~~ 174 (327)
|.++||+--+-+..+
T Consensus 154 l~d~gKvIilTvhp~ 168 (235)
T COG2874 154 LSDLGKVIILTVHPS 168 (235)
T ss_pred HHhCCCEEEEEeChh
Confidence 888999877766543
No 121
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=36.25 E-value=4.5e+02 Score=26.22 Aligned_cols=62 Identities=8% Similarity=0.053 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCC
Q 020373 58 YGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISA 126 (327)
Q Consensus 58 YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~ 126 (327)
+|.++.+-++|++..+.- +.+-++|.|-+.. ..--+.+..-+++.-+++ -++++.+|.|...
T Consensus 67 ~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~-eiIGDDi~~v~~~~~~~~---~~pVi~v~t~~f~ 128 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE---RPDLIVLTPTCTS-SILQEDLQNFVDRASIES---DSDVILADVNHYR 128 (513)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEECCCCch-hhhhcCHHHHHHHhhccc---CCCEEEeCCCCCc
Confidence 366666667776554321 4566667776632 222223333333322223 3689999988554
No 122
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=36.18 E-value=15 Score=35.88 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=21.0
Q ss_pred HHHhCCCHHHHHHHHHHhcC---cEEEeC
Q 020373 245 AEAHGKTVAQVSLRWIVEQG---VTVVVR 270 (327)
Q Consensus 245 a~~~g~s~aq~al~~~l~~~---~~~i~g 270 (327)
+--||.|...-.|+|+++.. .++++|
T Consensus 113 aGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 113 AGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred eCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 33579999999999999875 677776
No 123
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=35.34 E-value=3.2e+02 Score=24.31 Aligned_cols=108 Identities=11% Similarity=0.020 Sum_probs=54.0
Q ss_pred CCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHc-CCcCeEEe
Q 020373 93 NAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRL-GLTKSIGL 171 (327)
Q Consensus 93 ~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-Gkir~iGv 171 (327)
.++.+. +.++-+.|.++|+++|.+-+......... ++.. ....-++.++.+++. +..+...+
T Consensus 18 ~~~~~~-k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~---------------~~~~-~~~~~~e~i~~~~~~~~~~~~~~~ 80 (263)
T cd07943 18 QFTLEQ-VRAIARALDAAGVPLIEVGHGDGLGGSSL---------------NYGF-AAHTDEEYLEAAAEALKQAKLGVL 80 (263)
T ss_pred ecCHHH-HHHHHHHHHHcCCCEEEeecCCCCCCccc---------------ccCC-CCCChHHHHHHHHHhccCCEEEEE
Confidence 344443 44555568899999999876532110000 0000 001134555555443 34555555
Q ss_pred c---CCChHHHHHHHhhCCCCCcccccc--cCcccchHHHHHHHHhcCCEEEEe
Q 020373 172 S---NFSCKKIDTILTFATIPPSINQVE--MHPVWQQRKLREFCKVKGMNVTAY 220 (327)
Q Consensus 172 s---~~~~~~l~~~~~~~~~~~~~~q~~--~~~~~~~~~l~~~~~~~gi~via~ 220 (327)
+ ......++.+.+. +++ .+.+. .|....-.+.+++++++|..+...
T Consensus 81 ~~~~~~~~~~i~~a~~~-g~~--~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 81 LLPGIGTVDDLKMAADL-GVD--VVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred ecCCccCHHHHHHHHHc-CCC--EEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 2235566666653 333 33322 222222256788889999876553
No 124
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=35.34 E-value=1.5e+02 Score=28.33 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEEeccC
Q 020373 154 WEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 154 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~l 223 (327)
++.+.+|++...+- +.|-|.++..++..+++...+ +++|......- .-.++.+.|+.+|+.+..++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~av--dil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAV--DIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCC--cEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 56778888877665 667777778888888886643 46666654332 2367899999999999987764
No 125
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.23 E-value=3.7e+02 Score=24.89 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHH----HHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYGTEKA----LGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSL 107 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~----lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL 107 (327)
.+.++...+++.+.+.|+..|-- .|-|.+ +-+.++...+.+ ....+.|+|-.. .+.+ .-+.|
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~---tGGEPllr~dl~~li~~i~~~~---~l~~i~itTNG~-------ll~~-~~~~L 110 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRL---TGGEPLVRRGCDQLVARLGKLP---GLEELSLTTNGS-------RLAR-FAAEL 110 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---ECcCCCccccHHHHHHHHHhCC---CCceEEEEeChh-------HHHH-HHHHH
Confidence 46788889999999999988853 342222 223333221111 122566666531 1222 34556
Q ss_pred HHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 020373 108 SALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL 165 (327)
Q Consensus 108 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 165 (327)
+..|+++|- +-|+..++..- ..+ .....++.+++.++.+++.|.
T Consensus 111 ~~aGl~~v~-ISlDs~~~e~~----~~i---------~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 111 ADAGLKRLN-ISLDTLRPELF----AAL---------TRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HHcCCCeEE-EEeccCCHHHh----hhh---------cCCCCHHHHHHHHHHHHHcCC
Confidence 667877655 34444322110 000 011346788889988888774
No 126
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=35.00 E-value=1.3e+02 Score=23.65 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEE
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via 219 (327)
.+.+.+.+....+.|+|. ....+..++++......+++--...|..--..+-..|++++|+++-
T Consensus 12 ~~k~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~ 75 (116)
T COG1358 12 EQKALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVY 75 (116)
T ss_pred HHHHHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 467788888999999876 3466778888887766666554544433335678899999998875
No 127
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=34.70 E-value=3.9e+02 Score=25.02 Aligned_cols=38 Identities=3% Similarity=-0.136 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCcCeEEecCC-ChHHHHHHHhhCCCCCc
Q 020373 154 WEAMEESQRLGLTKSIGLSNF-SCKKIDTILTFATIPPS 191 (327)
Q Consensus 154 ~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~ 191 (327)
|+....+++.=++--+++.+. +++.++++++....+.+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V 312 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMV 312 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCee
Confidence 455556666556777777765 68889999887665533
No 128
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=34.54 E-value=1.9e+02 Score=29.81 Aligned_cols=68 Identities=10% Similarity=0.195 Sum_probs=51.2
Q ss_pred chHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCC------CHHHHHHHHHHhcC-cEEEeCCCCH
Q 020373 202 QQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGK------TVAQVSLRWIVEQG-VTVVVRSLNP 274 (327)
Q Consensus 202 ~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~------s~aq~al~~~l~~~-~~~i~g~~~~ 274 (327)
++..+.++|.+.++-++.-+.- ......|.++|++.|. ++.++.-.|.-... +.+..|+|+|
T Consensus 196 Rq~a~~~la~~~d~~~vvGg~~-----------SsNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP 264 (647)
T PRK00087 196 RQEAAEKLAKKVDVMIVVGGKN-----------SSNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTP 264 (647)
T ss_pred HHHHHHHHHhhCCEEEEECCCC-----------CccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCC
Confidence 3466888888888877763322 3345789999999874 68999999988766 7888999999
Q ss_pred HHHHHh
Q 020373 275 ERLKQN 280 (327)
Q Consensus 275 ~~l~en 280 (327)
+.+-+.
T Consensus 265 ~~~i~~ 270 (647)
T PRK00087 265 DWIIEE 270 (647)
T ss_pred HHHHHH
Confidence 866544
No 129
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=34.09 E-value=57 Score=29.65 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=38.2
Q ss_pred ChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCC
Q 020373 175 SCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~ 225 (327)
+...+.++.+..+++..++-..||+... ++-++|++.|+.+++.-|+..
T Consensus 202 D~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 202 DLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 3455667777888887777777766554 899999999999999888853
No 130
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=33.93 E-value=1.2e+02 Score=22.93 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEe
Q 020373 153 VWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAY 220 (327)
Q Consensus 153 ~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~ 220 (327)
+-.+|...++.|++. .| ..+..+.+...+...+++--.... .....+..+|++++|+++.|
T Consensus 4 ~~~~l~~a~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 4 FNRELRVAVDTGKVI-LG-----SKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHHcCCEE-Ec-----HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 345677888888875 44 345566666666555555444322 22367889999999998776
No 131
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=33.92 E-value=3.3e+02 Score=23.94 Aligned_cols=104 Identities=9% Similarity=0.212 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhC---------CCHHHHHHHHHHhcC-cEEEeCCCC
Q 020373 204 RKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHG---------KTVAQVSLRWIVEQG-VTVVVRSLN 273 (327)
Q Consensus 204 ~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g---------~s~aq~al~~~l~~~-~~~i~g~~~ 273 (327)
+++.+..++.|+..++++.+.. -.....+..+|++.| .+..++.-.++ ..| .++|+++..
T Consensus 75 e~l~~~l~~~gv~~vv~GdI~s---------~~qr~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i-~~G~~aiIv~v~a 144 (223)
T TIGR00290 75 EELKGILHTLDVEAVVFGAIYS---------EYQKTRIERVCRELGLKSFAPLWHRDPEKLMEEFV-EEKFEARIIAVAA 144 (223)
T ss_pred HHHHHHHHHcCCCEEEECCccc---------HHHHHHHHHHHHhcCCEEeccccCCCHHHHHHHHH-HcCCeEEEEEEec
Confidence 4455666666776666555543 112355666666654 34555555544 667 444544443
Q ss_pred HHHHHHhhcccccccCHHHHHHHHhhhccCC--CCCc-----cccCCCCCCCCc
Q 020373 274 PERLKQNLGIFDWELTDDDYDKINQIAQRRL--IPSD-----FLISPHGPFKTP 320 (327)
Q Consensus 274 ~~~l~enl~a~~~~Lt~~~~~~i~~~~~~~~--~~~~-----~~~~~~~~~~~~ 320 (327)
..|.+ .-+...++++.+++|.++.+++. ..|+ .++-+-|.|+.+
T Consensus 145 -~gL~~--~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGEyhT~V~d~PlF~~~ 195 (223)
T TIGR00290 145 -EGLDE--SWLGRRIDRKMIDELKKLNEKYGIHPAGEGGEFETLVLDAPIFKKR 195 (223)
T ss_pred -CCCCh--HHcCCcccHHHHHHHHHHHhccCCCccCCCceEEEEEecCcccccc
Confidence 33443 22346899999999988766543 2232 244444667654
No 132
>PLN02444 HMP-P synthase
Probab=33.51 E-value=5.3e+02 Score=26.17 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHHHHcCCCEE-eCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEee--------cC--CCCCCChhhHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHF-DTAAIYGTEKALGEAIAEALRLGLVTSREQLFITS--------KL--WCHNAHHDRVI 100 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~f-DTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~t--------K~--~~~~~~~~~i~ 100 (327)
.+.++-.+=+..|.+.|-..+ |-+ ..|.-..+-+++-+ ...+-|.| |+ ...+.+.+.+.
T Consensus 234 s~ie~EveK~~~A~~~GADTvMDLS-TGgdi~~iR~~Il~---------~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~ 303 (642)
T PLN02444 234 SSIEEEVYKLQWATMWGADTVMDLS-TGRHIHETREWILR---------NSPVPVGTVPIYQALEKVDGIAENLTWEVFR 303 (642)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHH---------cCCCCccCccHHHHHHHhcCChhhCCHHHHH
Confidence 455555566899999998755 544 33433333333321 11122222 11 12356677777
Q ss_pred HHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHH
Q 020373 101 PAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKID 180 (327)
Q Consensus 101 ~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~ 180 (327)
+.+++-.+ +-+|.+-+|.- -..+.++.++ + |-.||-+-....+.
T Consensus 304 d~ieeQae----qGVDfmTIH~G----------------------------v~~~~v~~~~--~--R~tgIVSRGGSi~a 347 (642)
T PLN02444 304 ETLIEQAE----QGVDYFTIHAG----------------------------VLLRYIPLTA--K--RMTGIVSRGGSIHA 347 (642)
T ss_pred HHHHHHHH----hCCCEEEEChh----------------------------hHHHHHHHHh--C--cccCceeCCcHHHH
Confidence 77777665 55788899963 1344455554 3 66777766655555
Q ss_pred HHHhhCCCCCcccccccCcccch-HHHHHHHHhcCCEEEE
Q 020373 181 TILTFATIPPSINQVEMHPVWQQ-RKLREFCKVKGMNVTA 219 (327)
Q Consensus 181 ~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~via 219 (327)
..+-... .-|++..+ .++++.|++++|.+--
T Consensus 348 ~Wml~~~--------kENPlYe~FD~ileI~k~YDVtlSL 379 (642)
T PLN02444 348 KWCLAYH--------KENFAYEHWDDILDICNQYDIALSI 379 (642)
T ss_pred HHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeec
Confidence 4433221 22333333 5677778888777643
No 133
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=33.41 E-value=1.7e+02 Score=22.82 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEE
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via 219 (327)
...++..|...++.|++. .| ..+..+++.......+++--+.++.+-...+..+|++.+|+++-
T Consensus 11 ~~ki~~lL~la~ragkl~-~G-----~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~ 74 (117)
T TIGR03677 11 ANKALEAVEKARETGKIK-KG-----TNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVY 74 (117)
T ss_pred HHHHHHHHHHHHHcCCEe-Ec-----HHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 366788889999999865 45 45667777777776666665665543346788999999999654
No 134
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=33.30 E-value=1.4e+02 Score=25.95 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCcCeEEec-CCChHHHHHHHhhCCCCCcccccccC
Q 020373 164 GLTKSIGLS-NFSCKKIDTILTFATIPPSINQVEMH 198 (327)
Q Consensus 164 Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~~q~~~~ 198 (327)
+.+..+||. +-+++.+.++++... +.++|++-.
T Consensus 53 ~~i~~VgVf~~~~~~~i~~~~~~~~--~d~vQLHg~ 86 (210)
T PRK01222 53 PFVKVVGVFVNASDEEIDEIVETVP--LDLLQLHGD 86 (210)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhcC--CCEEEECCC
Confidence 568899987 556888888887664 458888653
No 135
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=33.21 E-value=2.7e+02 Score=25.96 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHcCCcCeEEecC-----CChHHHHHHHhhCCCC-Ccc-c--cccc-------CcccchHHHHHHHH
Q 020373 148 LDYKGVWEAMEESQRLGLTKSIGLSN-----FSCKKIDTILTFATIP-PSI-N--QVEM-------HPVWQQRKLREFCK 211 (327)
Q Consensus 148 ~~~~~~~~~l~~l~~~Gkir~iGvs~-----~~~~~l~~~~~~~~~~-~~~-~--q~~~-------~~~~~~~~l~~~~~ 211 (327)
++.+++.+.++++++.| ++.|.+.. ...+.+.++++..+-. +.+ + ..+. +.-....+.++..+
T Consensus 70 ls~eeI~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46799999999999987 67777762 2233333333322110 101 0 0000 11122367788888
Q ss_pred hcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCH--HHHHHHHHHhcC----cEEEeCC-CCHHHHHHhhcc
Q 020373 212 VKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTV--AQVSLRWIVEQG----VTVVVRS-LNPERLKQNLGI 283 (327)
Q Consensus 212 ~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~--aq~al~~~l~~~----~~~i~g~-~~~~~l~enl~a 283 (327)
+.|+.-+. .. | .+.+.++..+.++.. +.+. .--+++++...| ...|+|. .+.++..+.+..
T Consensus 149 eAGl~~i~----~~-~-----~E~~~~~v~~~i~~~-~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~ 216 (343)
T TIGR03551 149 EAGLDSMP----GT-A-----AEILDDEVRKVICPD-KLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLI 216 (343)
T ss_pred HhCccccc----Cc-c-----hhhcCHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHH
Confidence 88887553 11 1 223334444444432 1222 234667777766 4667774 566666666554
No 136
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=33.12 E-value=3.6e+02 Score=25.20 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhc--CCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRL--GLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSA 109 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~--~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~r 109 (327)
.+.++...+++.|.+.|++=+= .-|-|.++-+-|.+.++. .+ .-.++-++|-. ........-|+.
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvR---lTGGEPllR~dl~eIi~~l~~~--~~~~islTTNG--------~~L~~~a~~Lk~ 109 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVR---LTGGEPLLRKDLDEIIARLARL--GIRDLSLTTNG--------VLLARRAADLKE 109 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEE---EeCCCchhhcCHHHHHHHHhhc--ccceEEEecch--------hhHHHHHHHHHH
Confidence 4689999999999999999885 335455544444333221 00 23566666653 345556667888
Q ss_pred hCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC----cCeEEecCCChHHHHHHHhh
Q 020373 110 LQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL----TKSIGLSNFSCKKIDTILTF 185 (327)
Q Consensus 110 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk----ir~iGvs~~~~~~l~~~~~~ 185 (327)
-|++.|- +-||..++.. ...+ + .......+++.+++.++.|. |-.+=+-+.+..++..+++.
T Consensus 110 AGl~rVN-VSLDsld~e~----f~~I-----T----~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 110 AGLDRVN-VSLDSLDPEK----FRKI-----T----GRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred cCCcEEE-eecccCCHHH----HHHH-----h----CCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 8887765 2344432110 0000 0 01125777888888887774 23444444444444444444
Q ss_pred C
Q 020373 186 A 186 (327)
Q Consensus 186 ~ 186 (327)
+
T Consensus 176 ~ 176 (322)
T COG2896 176 A 176 (322)
T ss_pred H
Confidence 3
No 137
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.89 E-value=3.3e+02 Score=23.62 Aligned_cols=140 Identities=18% Similarity=0.215 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHH
Q 020373 99 VIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKK 178 (327)
Q Consensus 99 i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~ 178 (327)
.+..+-+.|.++|+++|.+- .|... ....+.++.+.+.... .+-.+++......
T Consensus 15 ~k~~i~~~L~~~Gv~~iEvg---~~~~~---------------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~ 68 (237)
T PF00682_consen 15 EKLEIAKALDEAGVDYIEVG---FPFAS---------------------EDDFEQVRRLREALPN--ARLQALCRANEED 68 (237)
T ss_dssp HHHHHHHHHHHHTTSEEEEE---HCTSS---------------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEc---ccccC---------------------HHHHHHhhhhhhhhcc--cccceeeeehHHH
Confidence 44555567999999999987 22111 0123445555555555 4455666666666
Q ss_pred HHHHHh---hCCCCCcccccccCccc--------------chHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHH
Q 020373 179 IDTILT---FATIPPSINQVEMHPVW--------------QQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEAL 241 (327)
Q Consensus 179 l~~~~~---~~~~~~~~~q~~~~~~~--------------~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l 241 (327)
++.+++ ..+.+...+-++.|... .-.+.+.+++++|+.+.. ++-.. .....+.+
T Consensus 69 i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~-~~~~~--------~~~~~~~~ 139 (237)
T PF00682_consen 69 IERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAF-GCEDA--------SRTDPEEL 139 (237)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE-EETTT--------GGSSHHHH
T ss_pred HHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe-Ccccc--------ccccHHHH
Confidence 666444 34444333334444411 115678999999999933 33221 12234445
Q ss_pred HHHHHHhCCCHHHHHHHHHHhcC--cEEE---eCCCCHHHHHHhhcccc
Q 020373 242 KQIAEAHGKTVAQVSLRWIVEQG--VTVV---VRSLNPERLKQNLGIFD 285 (327)
Q Consensus 242 ~~la~~~g~s~aq~al~~~l~~~--~~~i---~g~~~~~~l~enl~a~~ 285 (327)
.++++. +...| ...| .|.-+|.++.+.++.+.
T Consensus 140 ~~~~~~------------~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 140 LELAEA------------LAEAGADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHHHHH------------HHHHT-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred HHHHHH------------HHHcCCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 444333 22224 2333 47888888888777654
No 138
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=32.88 E-value=1.1e+02 Score=24.88 Aligned_cols=121 Identities=13% Similarity=0.218 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccC---cccchHHHHHHHHhcCCEE-EEeccCC-CCCC
Q 020373 154 WEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMH---PVWQQRKLREFCKVKGMNV-TAYSPLG-AVGT 228 (327)
Q Consensus 154 ~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~---~~~~~~~l~~~~~~~gi~v-ia~~~l~-~~G~ 228 (327)
...+...++ +..-|.|...+.+.+..++....++ ++.+++. ++.-....+..|.++|+.+ +.|+|+- .
T Consensus 15 ~~~~~~~~~--~~divav~p~~~~~~~~a~~~~~vD--iIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~~--- 87 (150)
T PF01876_consen 15 RRSLSKFRK--KYDIVAVRPGSEKAFRAACSDPRVD--IITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLRS--- 87 (150)
T ss_dssp HHHHHHTTT----SEEEEE-S-HHHHHHHHHTT--S--EEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS---
T ss_pred HHHhhcccC--CceEEEEEcCCHHHHHHHHhcCCCC--EEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhcc---
Confidence 344444443 4556777777888888888876544 5555542 3333478899999999988 7788875 2
Q ss_pred CCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcCcEEEeCCCCHHHHHHhhcccc----cccCHHHHH
Q 020373 229 RWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGIFD----WELTDDDYD 294 (327)
Q Consensus 229 l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~~~~i~g~~~~~~l~enl~a~~----~~Lt~~~~~ 294 (327)
.. ..... -.+-.+..+++....++++-.|++++-+++.-.+..+ +-+++++.+
T Consensus 88 ----~~---~~r~~------~~~~~~~l~~~~~~~~iiiSSgA~~~~elr~P~dv~~l~~~lGl~~~~a~ 144 (150)
T PF01876_consen 88 ----DG---SNRRN------FISNARRLIRLTKKKNIIISSGASSPLELRSPRDVINLLALLGLSEEEAK 144 (150)
T ss_dssp -----H---HHHHH------HHHHHHHHHHHHHH--EEEE---SSGGG---HHHHHHHHHHTT--HHHHH
T ss_pred ----Cc---HHHHH------HHHHHHHHHHHhCCCCEEEEcCCCChhhCcCHHHHHHHHHHhCCCHHHHH
Confidence 00 01111 1122355677887777888888887766665444332 245655543
No 139
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=32.85 E-value=44 Score=26.76 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCEEEEeccCCC
Q 020373 204 RKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 204 ~~l~~~~~~~gi~via~~~l~~ 225 (327)
.++++.|+++||.|++|-.+..
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 6899999999999999988753
No 140
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=32.68 E-value=4.8e+02 Score=25.49 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHHHHHcC-CcCeEEec--CCC--hHHHHHHHhh---CCCCCcccccccCcccchHHHHHHHHhcCCEE
Q 020373 146 SPLDYKGVWEAMEESQRLG-LTKSIGLS--NFS--CKKIDTILTF---ATIPPSINQVEMHPVWQQRKLREFCKVKGMNV 217 (327)
Q Consensus 146 ~~~~~~~~~~~l~~l~~~G-kir~iGvs--~~~--~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v 217 (327)
.....+.+.+.++.+++.. .++.+-+. +|. ...+.++++. .++.. ..+...+ -..++++..++.|+..
T Consensus 225 r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~-~~~~~~~---~~~e~l~~l~~aG~~~ 300 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTW-SCNARAN---VDYETLKVMKENGLRL 300 (472)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceE-EEEecCC---CCHHHHHHHHHcCCCE
Confidence 3456788999999999874 56766554 332 3344444332 22211 1111111 2468899999999876
Q ss_pred EEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcC----cEEEeCC--CCHHHHHHhhcc
Q 020373 218 TAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQG----VTVVVRS--LNPERLKQNLGI 283 (327)
Q Consensus 218 ia~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~----~~~i~g~--~~~~~l~enl~a 283 (327)
+..+.=. ...+.++.+.+.+...-..-+++++...| ...|+|. .+.+.+++.++.
T Consensus 301 v~iGiES-----------~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~ 361 (472)
T TIGR03471 301 LLVGYES-----------GDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDF 361 (472)
T ss_pred EEEcCCC-----------CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHH
Confidence 6533332 33455666543333333445777887877 4567785 688888887654
No 141
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=32.28 E-value=3.4e+02 Score=23.68 Aligned_cols=140 Identities=9% Similarity=-0.053 Sum_probs=64.2
Q ss_pred CcCCccccccCccCCChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHHHHhcCCC-----CCCC--ceEEeecC
Q 020373 18 RNMPVIGLGCGVGKSNLNALKLAVLEAIKLGYRHFDTAAIYG-TEKALGEAIAEALRLGLV-----TSRE--QLFITSKL 89 (327)
Q Consensus 18 ~~vs~lglG~~~~~~~~~~~~~~l~~A~e~Gin~fDTA~~Yg-sE~~lG~aL~~~~~~~~~-----~~R~--~~~I~tK~ 89 (327)
..+|.++-|..+ +.+++ +.+++.|+..+..+...- +-..+.++.+.+..+.++ ..|. +..|.++.
T Consensus 70 ~~~pv~~~GGI~---s~~d~----~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~ 142 (243)
T cd04731 70 VFIPLTVGGGIR---SLEDA----RRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG 142 (243)
T ss_pred CCCCEEEeCCCC---CHHHH----HHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC
Confidence 335555544443 34443 444557888887665443 445555655543000010 0011 13444555
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeE
Q 020373 90 WCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSI 169 (327)
Q Consensus 90 ~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~i 169 (327)
|......+ .. .+-+-++.+|. |.+.+|..+...... .. -|+.+.++++.-.+.-|
T Consensus 143 ~~~~~~~~-~~-~~~~~l~~~G~---d~i~v~~i~~~g~~~----------------g~----~~~~i~~i~~~~~~pvi 197 (243)
T cd04731 143 GRKPTGLD-AV-EWAKEVEELGA---GEILLTSMDRDGTKK----------------GY----DLELIRAVSSAVNIPVI 197 (243)
T ss_pred CceecCCC-HH-HHHHHHHHCCC---CEEEEeccCCCCCCC----------------CC----CHHHHHHHHhhCCCCEE
Confidence 54332211 21 22233455664 567777643221100 01 24445555555456655
Q ss_pred EecCC-ChHHHHHHHhhCCCC
Q 020373 170 GLSNF-SCKKIDTILTFATIP 189 (327)
Q Consensus 170 Gvs~~-~~~~l~~~~~~~~~~ 189 (327)
..... +++.++++++..+.+
T Consensus 198 a~GGi~~~~di~~~l~~~g~d 218 (243)
T cd04731 198 ASGGAGKPEHFVEAFEEGGAD 218 (243)
T ss_pred EeCCCCCHHHHHHHHHhCCCC
Confidence 55544 366677766654443
No 142
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=32.22 E-value=1.8e+02 Score=27.37 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEEeccC
Q 020373 154 WEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 154 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~l 223 (327)
++.+.+|++...+. +.|-|.++..++..+++...+ +++|+...-.- .-..+...|+.+|+.++.++.+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~--d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAA--DVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCC--CEEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 55666777766555 667777777777777776543 35555544321 2256788888888888765444
No 143
>PRK06740 histidinol-phosphatase; Validated
Probab=31.98 E-value=4.3e+02 Score=24.67 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCC----HHHHHHHHHHHHHcCCcCeEE
Q 020373 101 PAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLD----YKGVWEAMEESQRLGLTKSIG 170 (327)
Q Consensus 101 ~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~l~~~Gkir~iG 170 (327)
..+++.|+....||+ +.-+|..+...-.... ..+.+...+ ....++.+.++.+.|.+.-||
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~--------~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg 220 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPD--------TKEYFEEHDLYALYDTFFKTVECAIRSELFDIIA 220 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCcc--------HHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 456667777778887 7788976421100000 000011111 233567788888999887777
No 144
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.95 E-value=2.8e+02 Score=26.10 Aligned_cols=146 Identities=20% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCCceecCCCCCCCcCCccccccCccCCChHHHHHHHHHHHHcCCC--EEeCCCCcCCHHHHHHHHHHHHhcCCCCCCC
Q 020373 4 SIQPTSALSSSSGHRNMPVIGLGCGVGKSNLNALKLAVLEAIKLGYR--HFDTAAIYGTEKALGEAIAEALRLGLVTSRE 81 (327)
Q Consensus 4 ~~m~~~~L~~t~g~~~vs~lglG~~~~~~~~~~~~~~l~~A~e~Gin--~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~ 81 (327)
++|.+.-++. | ..+-.+|+|+ +| .-.+..|-..|.+ .||++ ++-=-++++.+ --|
T Consensus 172 spLk~~g~~p--G-~~vgI~GlGG--LG------h~aVq~AKAMG~rV~vis~~-----~~kkeea~~~L-------GAd 228 (360)
T KOG0023|consen 172 SPLKRSGLGP--G-KWVGIVGLGG--LG------HMAVQYAKAMGMRVTVISTS-----SKKKEEAIKSL-------GAD 228 (360)
T ss_pred ehhHHcCCCC--C-cEEEEecCcc--cc------hHHHHHHHHhCcEEEEEeCC-----chhHHHHHHhc-------Ccc
Q ss_pred ceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHH
Q 020373 82 QLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQ 161 (327)
Q Consensus 82 ~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (327)
.+.+++|- ..+.+++..++. .+++.+--+--|.. -..++-+|
T Consensus 229 ~fv~~~~d-------~d~~~~~~~~~d-g~~~~v~~~a~~~~------------------------------~~~~~~lk 270 (360)
T KOG0023|consen 229 VFVDSTED-------PDIMKAIMKTTD-GGIDTVSNLAEHAL------------------------------EPLLGLLK 270 (360)
T ss_pred eeEEecCC-------HHHHHHHHHhhc-Ccceeeeeccccch------------------------------HHHHHHhh
Q ss_pred HcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch---HHHHHHHHhcCC
Q 020373 162 RLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ---RKLREFCKVKGM 215 (327)
Q Consensus 162 ~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi 215 (327)
..|++-.+|+-.. +-.+....-..+ ...+-.+..-.. ++++++|.+++|
T Consensus 271 ~~Gt~V~vg~p~~-~~~~~~~~lil~----~~~I~GS~vG~~ket~E~Ldf~a~~~i 322 (360)
T KOG0023|consen 271 VNGTLVLVGLPEK-PLKLDTFPLILG----RKSIKGSIVGSRKETQEALDFVARGLI 322 (360)
T ss_pred cCCEEEEEeCcCC-cccccchhhhcc----cEEEEeeccccHHHHHHHHHHHHcCCC
No 145
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=31.75 E-value=3.5e+02 Score=26.00 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=72.8
Q ss_pred HHHHHcCCcCeEEecCCChHH-HHHHHhhCCCCC-cccccccCcccchHHHHHHHHhcCCEE---EEeccCCCCCCCCC-
Q 020373 158 EESQRLGLTKSIGLSNFSCKK-IDTILTFATIPP-SINQVEMHPVWQQRKLREFCKVKGMNV---TAYSPLGAVGTRWG- 231 (327)
Q Consensus 158 ~~l~~~Gkir~iGvs~~~~~~-l~~~~~~~~~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~v---ia~~~l~~~G~l~~- 231 (327)
.+++++-.||.+|+-..+..- ..++.+..+-+. ..+.+-+++-+- ..+ .|-++|..| +.++||.+ +.-|
T Consensus 164 ~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNG-ASi--cAiknGkSvDTSMGfTPLeG--l~MGT 238 (396)
T COG0282 164 YELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNG-ASI--CAIKNGKSVDTSMGFTPLEG--LMMGT 238 (396)
T ss_pred HHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCc-hhh--hhhhCCeeeccCCCCCcccc--eeccC
Confidence 678888999999998777443 233333333221 233333333221 233 244666655 77888864 2211
Q ss_pred CCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcCcEEEeCCC-CHHHHHHhhcc
Q 020373 232 SNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSL-NPERLKQNLGI 283 (327)
Q Consensus 232 ~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~~~~i~g~~-~~~~l~enl~a 283 (327)
+..-++...+.-++++.|+|+.|+.---.-..|.-=+.|.+ +...++++.+-
T Consensus 239 RsGdiDP~ii~~l~~~~~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~ 291 (396)
T COG0282 239 RSGDIDPGIILYLMEQEGMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAE 291 (396)
T ss_pred CCCCCChHHHHHHHHhcCCCHHHHHHHHhhhccccccccccchHHHHHHHhcc
Confidence 12235677888899999999999766555555665666744 46777776654
No 146
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.51 E-value=1.4e+02 Score=25.93 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCC---cCeEEecCCC-hHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEE
Q 020373 152 GVWEAMEESQRLGL---TKSIGLSNFS-CKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 152 ~~~~~l~~l~~~Gk---ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via 219 (327)
...+.+++++++-. =-.||..+.. .++++.+++.+- .+ -.+|.. ..+++++|+++||.++.
T Consensus 50 ~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~F-----ivsP~~-~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 50 FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-QF-----IVSPSF-NRETAKICNLYQIPYLP 114 (213)
T ss_pred cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-CE-----EECCCC-CHHHHHHHHHcCCCEEC
Confidence 34566666665431 1358877665 778888887543 22 222321 36899999999999886
No 147
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=30.87 E-value=1.3e+02 Score=25.90 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCcCeEEecCCC-hHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEE
Q 020373 154 WEAMEESQRLGLTKSIGLSNFS-CKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 154 ~~~l~~l~~~Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via 219 (327)
.+.+++++++-.=-.||..+.. .++++.+++.+- .+ -.+|. -+.+++++|+++|+.++.
T Consensus 47 ~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA-~F-----ivSP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA-QF-----IVSPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SE-----EEESS---HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC-CE-----EECCC-CCHHHHHHHHHcCCcccC
Confidence 3444444443222458887765 788888887653 22 22221 237899999999999997
No 148
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=30.69 E-value=1.9e+02 Score=27.52 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch--HHHHHHHHhcCCEEEEeccCCCCCCCCC
Q 020373 154 WEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ--RKLREFCKVKGMNVTAYSPLGAVGTRWG 231 (327)
Q Consensus 154 ~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~via~~~l~~~G~l~~ 231 (327)
..++.+|.+.|.+.+|-.-.-..-.+..+...-.-+|.. .|.....+ +.+++.|+++||.|+.-+ |..
T Consensus 12 ~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~~---gY~~~~~~~L~~~L~~~~~~gIkvI~Na-----Gg~-- 81 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPTK---GYAPDFVRDLRPLLPAAAEKGIKVITNA-----GGL-- 81 (362)
T ss_pred HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHHHHHHHhCCCCEEEeC-----CCC--
Confidence 566778888999999875433221111111110111111 12222222 678999999999998742 222
Q ss_pred CCCcCChHHHHHHHHHhCCC
Q 020373 232 SNQVMENEALKQIAEAHGKT 251 (327)
Q Consensus 232 ~~~~~~~~~l~~la~~~g~s 251 (327)
.+.-..+.+++++++.|.+
T Consensus 82 -np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 -NPAGCADIVREIARELGLS 100 (362)
T ss_pred -CHHHHHHHHHHHHHhcCCC
Confidence 1112346777777777655
No 149
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=30.67 E-value=4.4e+02 Score=24.39 Aligned_cols=138 Identities=11% Similarity=0.037 Sum_probs=69.3
Q ss_pred HHHHHHHHHHH-HcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHH----------
Q 020373 35 NALKLAVLEAI-KLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAI---------- 103 (327)
Q Consensus 35 ~~~~~~l~~A~-e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~---------- 103 (327)
.++.+++...+ +.+.+.|=|=..==.-.-++..|+..+++|++ ++.|+|=.+ . .+.+.+++
T Consensus 31 ~~A~~i~~~m~~~~~~~ifLt~tg~mvsaGlr~ii~~Li~~g~V----d~ivtTgan---l-~hD~~~~~g~~~~g~f~~ 102 (301)
T TIGR00321 31 GEADKIWKEMCFDEEITIFMGYAGNLVPSGMREIIAYLIQHGMI----DALVTTGAN---L-EHDLIEALGPTHLGDFAV 102 (301)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeccccchhhHHHHHHHHHHcCCe----eEEEeCCCc---h-HHHHHHHcCcccccCCCC
Confidence 56677777777 33455442111100345577888887766543 555666532 1 12233333
Q ss_pred -HHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHH-HHHHHHHHHHcCCcCeEEecCCChHHHHH
Q 020373 104 -KKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKG-VWEAMEESQRLGLTKSIGLSNFSCKKIDT 181 (327)
Q Consensus 104 -~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~Gkir~iGvs~~~~~~l~~ 181 (327)
+.-|++.|+++|-=+++-.- ++ ...++ +.+.++++.++.+ .+++.++-.
T Consensus 103 dd~~Lr~~ginRI~dv~ip~e--------------------~y--~~~E~~i~~i~~~~~~~~~-------~~s~~e~i~ 153 (301)
T TIGR00321 103 DDKKLREEGINRIGDVFVPNE--------------------NF--EVFEEWLVEIFSEMLGEQP-------IITPSEFID 153 (301)
T ss_pred ChHHHHHcCCCccceecCCHH--------------------HH--HHHHHHHHHHHHHHHhcCC-------CcCHHHHHH
Confidence 55566666666533332210 00 01222 2234455444333 255555433
Q ss_pred HHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEec
Q 020373 182 ILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 182 ~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~ 221 (327)
.+-. .++ ..+..++.+|.++||+|++=+
T Consensus 154 ~lGk----------~i~--~~e~Sil~~Ayk~~VPIf~Pa 181 (301)
T TIGR00321 154 EIGK----------RIN--DKRSSIRYAAYKRKIPIFCPA 181 (301)
T ss_pred HHHh----------hcC--CccchHHHHHHHcCCCEECCC
Confidence 3221 011 024689999999999998743
No 150
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=30.59 E-value=4.3e+02 Score=24.24 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=85.5
Q ss_pred cccccCccC------CChHHHHHHHHHHH-HcCCCEEeCCCCcCC------HHHHHHHHHHHHhcCCCCCCCceEEeec-
Q 020373 23 IGLGCGVGK------SNLNALKLAVLEAI-KLGYRHFDTAAIYGT------EKALGEAIAEALRLGLVTSREQLFITSK- 88 (327)
Q Consensus 23 lglG~~~~~------~~~~~~~~~l~~A~-e~Gin~fDTA~~Ygs------E~~lG~aL~~~~~~~~~~~R~~~~I~tK- 88 (327)
|.||++... .+.++..+.+...+ ..|.+.+|--.-|+. -..+-++|+...++ +..+.|+--
T Consensus 72 iS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~-----~p~l~vs~Tl 146 (294)
T cd06543 72 VSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE-----YPDLKISFTL 146 (294)
T ss_pred EEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH-----CCCcEEEEec
Confidence 567766543 23444444444445 459999997666661 25567777765332 223444333
Q ss_pred -CCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCC--CCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 020373 89 -LWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKP--TSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL 165 (327)
Q Consensus 89 -~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 165 (327)
+.+....++.. .+-++.+..|+ ++|.+-+--.+.... .. ++ -..+..+.+.++.+=+
T Consensus 147 p~~p~gl~~~g~--~~l~~a~~~Gv-~~d~VNiMtmDyg~~~~~~----------------~m-g~~a~~aa~~~~~ql~ 206 (294)
T cd06543 147 PVLPTGLTPDGL--NVLEAAAANGV-DLDTVNIMTMDYGSSAGSQ----------------DM-GAAAISAAESLHDQLK 206 (294)
T ss_pred CCCCCCCChhHH--HHHHHHHHcCC-CcceeeeeeecCCCCCCcc----------------cH-HHHHHHHHHHHHHHHH
Confidence 33344433322 24444445564 234443333322211 00 01 2345555555554322
Q ss_pred cCeEEecCCChHHHHHHHhhCCCCCcccccccC--cccc--hHHHHHHHHhcCCEEEEeccCCC
Q 020373 166 TKSIGLSNFSCKKIDTILTFATIPPSINQVEMH--PVWQ--QRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 166 ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~--~~~~--~~~l~~~~~~~gi~via~~~l~~ 225 (327)
--+=+ ++..+ +....++.|.+-+.... .+.. -+.+.++++++||+.+.+-.+.+
T Consensus 207 ~~~~~---~s~~~---~~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~R 264 (294)
T cd06543 207 DLYPK---LSDAE---LWAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNR 264 (294)
T ss_pred HHccC---CCHHH---HHHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccC
Confidence 22112 23222 22333444555444332 1222 27799999999999999887754
No 151
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=30.55 E-value=4.4e+02 Score=24.41 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=49.8
Q ss_pred CCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHH
Q 020373 79 SREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAME 158 (327)
Q Consensus 79 ~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (327)
.++.+.++.|.....+ ...+.+.+++..+.+|. ++.+ ..|... +.....+.++
T Consensus 22 ~~~~i~~v~k~~~~pf-~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~----------------------d~~~q~~~i~ 74 (336)
T PRK15408 22 AAERIAFIPKLVGVGF-FTSGGNGAKEAGKELGV---DVTY-DGPTEP----------------------SVSGQVQLIN 74 (336)
T ss_pred CCcEEEEEECCCCCHH-HHHHHHHHHHHHHHhCC---EEEE-ECCCCC----------------------CHHHHHHHHH
Confidence 5778888888643333 45678889999999984 4443 333211 1355668888
Q ss_pred HHHHcCCcCeEEecCCChHHHHHH
Q 020373 159 ESQRLGLTKSIGLSNFSCKKIDTI 182 (327)
Q Consensus 159 ~l~~~Gkir~iGvs~~~~~~l~~~ 182 (327)
.+..+| +..|-++..++..+...
T Consensus 75 ~li~~~-vdgIiv~~~d~~al~~~ 97 (336)
T PRK15408 75 NFVNQG-YNAIIVSAVSPDGLCPA 97 (336)
T ss_pred HHHHcC-CCEEEEecCCHHHHHHH
Confidence 888866 88888887775543333
No 152
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=30.21 E-value=1.4e+02 Score=24.64 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCCceEEee-cCCCCCCChhhHHHHHHHHHHHhC
Q 020373 34 LNALKLAVLEAIKLGYRHFDTAAIYG-TEKALGEAIAEALRLGLVTSREQLFITS-KLWCHNAHHDRVIPAIKKSLSALQ 111 (327)
Q Consensus 34 ~~~~~~~l~~A~e~Gin~fDTA~~Yg-sE~~lG~aL~~~~~~~~~~~R~~~~I~t-K~~~~~~~~~~i~~~~~~SL~rLg 111 (327)
++...-.+++|-+.||.+|=.|..|| +-..+-+.+. | . =++++.| ..+-..-+...+.+.+++-|+..|
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g---~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erG 83 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G---D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERG 83 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c---C-ceEEEEEeecccccCCceecCHHHHHHHHHcC
Confidence 34445566788899999999999998 2211112221 1 1 2344444 333333344557888999999999
Q ss_pred CC
Q 020373 112 ME 113 (327)
Q Consensus 112 ~d 113 (327)
.+
T Consensus 84 a~ 85 (186)
T COG1751 84 AK 85 (186)
T ss_pred ce
Confidence 65
No 153
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=30.17 E-value=5.6e+02 Score=25.47 Aligned_cols=127 Identities=14% Similarity=0.221 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCC
Q 020373 62 KALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPN 141 (327)
Q Consensus 62 ~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~ 141 (327)
+-+|.+|+ .+.+++|+-.+...|.....+..-+.+-+++-++..=-+ -|.--
T Consensus 342 ~dlG~~L~---------~~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQI-~lElT------------------ 393 (524)
T COG4943 342 RDLGDLLR---------QHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQI-ALELT------------------ 393 (524)
T ss_pred HHhHHHHH---------hCcceEEEEeeeehhhcCchHHHHHHHHHHhcCcChHHh-eeehh------------------
Confidence 34677776 567788888887778877788888888888877542111 11110
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCC--hHHHHHHHh----hCCCCCccccc-ccCcccc--hHHHHHHHHh
Q 020373 142 KEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFS--CKKIDTILT----FATIPPSINQV-EMHPVWQ--QRKLREFCKV 212 (327)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~--~~~l~~~~~----~~~~~~~~~q~-~~~~~~~--~~~l~~~~~~ 212 (327)
+-+.++....-.-+.++++.|.--+ |-.|. -..|..+.+ .-+++=.+++. .++.... -..+++.|+.
T Consensus 394 --ER~f~D~~~~~~iI~r~ReaG~~Iy--IDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~ 469 (524)
T COG4943 394 --ERTFADPKKMTPIILRLREAGHEIY--IDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKS 469 (524)
T ss_pred --hhhhcCchhhhHHHHHHHhcCCeEE--EccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHH
Confidence 0112345667778999999997333 33322 111222211 11222222221 1111111 1568999999
Q ss_pred cCCEEEEe
Q 020373 213 KGMNVTAY 220 (327)
Q Consensus 213 ~gi~via~ 220 (327)
+|+.+++=
T Consensus 470 L~L~iVaE 477 (524)
T COG4943 470 LGLKIVAE 477 (524)
T ss_pred cCCcEEee
Confidence 99999983
No 154
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=30.06 E-value=28 Score=25.28 Aligned_cols=25 Identities=8% Similarity=0.212 Sum_probs=20.0
Q ss_pred ccCHHHHHHHHhhhccCCCCCcccc
Q 020373 287 ELTDDDYDKINQIAQRRLIPSDFLI 311 (327)
Q Consensus 287 ~Lt~~~~~~i~~~~~~~~~~~~~~~ 311 (327)
+|+++|.+.++++.+..+...+.|-
T Consensus 2 ~LSe~E~r~L~eiEr~L~~~DP~fa 26 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRADDPRFA 26 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhcCcHHH
Confidence 6999999999999888766655543
No 155
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=29.96 E-value=1.9e+02 Score=26.05 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=33.2
Q ss_pred cceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHH
Q 020373 115 LDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTI 182 (327)
Q Consensus 115 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~ 182 (327)
.|+++|..|....+ .....++++-|.+|+++|+ .|=+.+|+...+.+.
T Consensus 158 p~lllLDEP~~gvD------------------~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 158 PDLLLLDEPFTGVD------------------VAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAY 205 (254)
T ss_pred CCEEEecCCcccCC------------------HHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhh
Confidence 48888887754322 1224678899999999987 677778886665544
No 156
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=29.89 E-value=91 Score=27.39 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcCCcCeEEe----cCCChHHHHHHHhhCCCCCcccccccCcccc--hHHHHHHHHhcCCEEEEeccC
Q 020373 150 YKGVWEAMEESQRLGLTKSIGL----SNFSCKKIDTILTFATIPPSINQVEMHPVWQ--QRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGv----s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~--~~~l~~~~~~~gi~via~~~l 223 (327)
.++..++|..++ +..|.. |.+....++.+.+..+.. .|.|+|. +.+++...-+.|..++.-+.-
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 466667777777 445543 334455577777776654 5667776 367777777777766665555
Q ss_pred CCCCCCCC-CCCcCC---hHHHHHHHHHhCCCHH
Q 020373 224 GAVGTRWG-SNQVME---NEALKQIAEAHGKTVA 253 (327)
Q Consensus 224 ~~~G~l~~-~~~~~~---~~~l~~la~~~g~s~a 253 (327)
+. |+... -+..++ .+.+..++++||+.|+
T Consensus 145 a~-gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 145 AE-GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cc-CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 54 44310 011222 3677888888888764
No 157
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=29.57 E-value=2e+02 Score=23.96 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=53.8
Q ss_pred CcCeEEecCCChHHH------HHHHhhC-CCCCcccccccCcccch---------------HHHHHHHHhcCCEEEEecc
Q 020373 165 LTKSIGLSNFSCKKI------DTILTFA-TIPPSINQVEMHPVWQQ---------------RKLREFCKVKGMNVTAYSP 222 (327)
Q Consensus 165 kir~iGvs~~~~~~l------~~~~~~~-~~~~~~~q~~~~~~~~~---------------~~l~~~~~~~gi~via~~~ 222 (327)
.|.+.|++..+...+ ..++... +.+.+++++-.|-.... ..+++.++++|+.++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 577889988876543 2344432 34566777776654321 4578889999999988887
Q ss_pred CCCCCCCCCC--CCcC--ChHHHHHHHHHhCCCH
Q 020373 223 LGAVGTRWGS--NQVM--ENEALKQIAEAHGKTV 252 (327)
Q Consensus 223 l~~~G~l~~~--~~~~--~~~~l~~la~~~g~s~ 252 (327)
.......... .... -.+.++++|+++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 6421111010 0011 1477889999998764
No 158
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=29.43 E-value=1.1e+02 Score=28.91 Aligned_cols=197 Identities=16% Similarity=0.184 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCC---H---HHHHHHHHHHHhcCCCCCCCceEEeecCCCC-----CCChhhHHH
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYGT---E---KALGEAIAEALRLGLVTSREQLFITSKLWCH-----NAHHDRVIP 101 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~Ygs---E---~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~-----~~~~~~i~~ 101 (327)
+.++..+.|+.|.+.|++.+=|+=+..- + +.+.+.++.. +...+.|+.-+.+. ..+++.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a-------~~~~~~v~~Disp~~l~~lg~~~~dl-- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLA-------KELGMEVIADISPKVLKKLGISYDDL-- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHH-------HHCT-EEEEEE-CCHHHTTT-BTTBT--
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHH-------HHCCCEEEEECCHHHHHHcCCCHHHH--
Confidence 4577889999999999999988866541 1 2233333332 23344555444221 1111111
Q ss_pred HHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHH
Q 020373 102 AIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDT 181 (327)
Q Consensus 102 ~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~ 181 (327)
..++.||++.|= |..- -..+.+.+|-++|.--.+=.|+.+.+.++.
T Consensus 83 ---~~~~~lGi~~lR---lD~G----------------------------f~~~~ia~ls~ng~~I~LNASti~~~~l~~ 128 (357)
T PF05913_consen 83 ---SFFKELGIDGLR---LDYG----------------------------FSGEEIAKLSKNGIKIELNASTITEEELDE 128 (357)
T ss_dssp ---HHHHHHT-SEEE---ESSS-----------------------------SCHHHHHHTTT-SEEEEETTT--CCHHHH
T ss_pred ---HHHHHcCCCEEE---ECCC----------------------------CCHHHHHHHHhCCCEEEEECCCCChHHHHH
Confidence 134556654321 1110 011234445555655556778877888888
Q ss_pred HHhhCCCCCc--ccccccCcccch-------HHHHHHHHhcCCEEEEeccCCC--CCCCC-CCCCcCChHHHHHHHHHhC
Q 020373 182 ILTFATIPPS--INQVEMHPVWQQ-------RKLREFCKVKGMNVTAYSPLGA--VGTRW-GSNQVMENEALKQIAEAHG 249 (327)
Q Consensus 182 ~~~~~~~~~~--~~q~~~~~~~~~-------~~l~~~~~~~gi~via~~~l~~--~G~l~-~~~~~~~~~~l~~la~~~g 249 (327)
+.+... .+. ..-.+|.|.... .+.-++.++.|+.+.|+-|=.. .|.+. |-+.+. +|.
T Consensus 129 L~~~~~-~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl~~GLPTlE----------~hR 197 (357)
T PF05913_consen 129 LIKYGA-NFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDENKRGPLYEGLPTLE----------KHR 197 (357)
T ss_dssp HCCTT---GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS-BTTT-S--BSBG----------GGT
T ss_pred HHHhcC-CHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCcccCCccCCCCccH----------HHc
Confidence 876542 111 111222221110 3345778999999999865431 12211 111111 233
Q ss_pred CCHHHHHHHHHHhcC--cEEEeCCC--CHHHHHHhhcc
Q 020373 250 KTVAQVSLRWIVEQG--VTVVVRSL--NPERLKQNLGI 283 (327)
Q Consensus 250 ~s~aq~al~~~l~~~--~~~i~g~~--~~~~l~enl~a 283 (327)
--+..+|.+.+...+ ..|++|=. +.++++.....
T Consensus 198 ~~~p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 198 NLPPYAAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp TS-HHHHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred CCCHHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 333445566666666 67888754 44455544333
No 159
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=29.25 E-value=1.1e+02 Score=29.89 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCC-CCCcccccccC
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFAT-IPPSINQVEMH 198 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~ 198 (327)
++++++-.++..++|+-..||+-..-.+.++++++..- ++.+.-|...+
T Consensus 219 ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 219 LDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 68999999999999999999999988899999988653 33444566543
No 160
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=29.17 E-value=4.7e+02 Score=24.30 Aligned_cols=131 Identities=18% Similarity=0.132 Sum_probs=79.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEe----------CCCCcC-----CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCCh
Q 020373 32 SNLNALKLAVLEAIKLGYRHFD----------TAAIYG-----TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHH 96 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fD----------TA~~Yg-----sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 96 (327)
.+++...+....+-+.|+..|| +...+| +.+++.+.++...+.. + ++-|+.|+-......
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av---~--~iPVTVKiRlG~d~~ 150 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAV---G--DIPVTVKIRLGWDDD 150 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhh---C--CCCeEEEEecccCcc
Confidence 4667777888888899999998 333445 4677888887653211 2 567888872221112
Q ss_pred hhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC-cCeEEecC-C
Q 020373 97 DRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL-TKSIGLSN-F 174 (327)
Q Consensus 97 ~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk-ir~iGvs~-~ 174 (327)
+.....+.+.++..| +|.+.+|.-.+..... -..-|+.+.++++.=. |--||=.+ +
T Consensus 151 ~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~-------------------~~ad~~~I~~vk~~~~~ipvi~NGdI~ 208 (323)
T COG0042 151 DILALEIARILEDAG---ADALTVHGRTRAQGYL-------------------GPADWDYIKELKEAVPSIPVIANGDIK 208 (323)
T ss_pred cccHHHHHHHHHhcC---CCEEEEecccHHhcCC-------------------CccCHHHHHHHHHhCCCCeEEeCCCcC
Confidence 234445666666776 5788999654322100 0123666777777655 55555444 4
Q ss_pred ChHHHHHHHhhCCCC
Q 020373 175 SCKKIDTILTFATIP 189 (327)
Q Consensus 175 ~~~~l~~~~~~~~~~ 189 (327)
+.+...+.++..+.+
T Consensus 209 s~~~a~~~l~~tg~D 223 (323)
T COG0042 209 SLEDAKEMLEYTGAD 223 (323)
T ss_pred CHHHHHHHHHhhCCC
Confidence 677778888876544
No 161
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=29.00 E-value=5e+02 Score=24.58 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccc---hHHHHHHHHhcCCEEEEeccCC
Q 020373 151 KGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQ---QRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 151 ~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~via~~~l~ 224 (327)
...+..+..+...+.++-.-+...+.+.++++++. +.+.+++..+-|+... -+.+.+.|+++|+-++.=..++
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 101 GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCc
Confidence 44566666665555555444445567777777643 2344455556666533 2678999999999888766554
No 162
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=28.97 E-value=4.2e+02 Score=25.03 Aligned_cols=91 Identities=21% Similarity=0.343 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC-cCeEEecCCChHH
Q 020373 100 IPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL-TKSIGLSNFSCKK 178 (327)
Q Consensus 100 ~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk-ir~iGvs~~~~~~ 178 (327)
+..+-+.|.++|+++|.+- +|... ++-|+.++.+.+.+. .+-.+.+......
T Consensus 24 k~~ia~~L~~~Gv~~IEvG---~p~~~------------------------~~~~e~i~~i~~~~~~~~v~~~~r~~~~d 76 (363)
T TIGR02090 24 KVEIARKLDELGVDVIEAG---FPIAS------------------------EGEFEAIKKISQEGLNAEICSLARALKKD 76 (363)
T ss_pred HHHHHHHHHHcCCCEEEEe---CCCCC------------------------hHHHHHHHHHHhcCCCcEEEEEcccCHHH
Confidence 4455666999999998864 33211 223666777766554 4444555666777
Q ss_pred HHHHHhhCCCCCcccccccCcccc--------------hHHHHHHHHhcCCEEE
Q 020373 179 IDTILTFATIPPSINQVEMHPVWQ--------------QRKLREFCKVKGMNVT 218 (327)
Q Consensus 179 l~~~~~~~~~~~~~~q~~~~~~~~--------------~~~l~~~~~~~gi~vi 218 (327)
++.+.+. +.+...+-++.|.... -.+.+++|+++|..+.
T Consensus 77 i~~a~~~-g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 77 IDKAIDC-GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred HHHHHHc-CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 8877764 3332222223222211 1356788999998764
No 163
>PLN02540 methylenetetrahydrofolate reductase
Probab=28.94 E-value=6.3e+02 Score=25.66 Aligned_cols=161 Identities=12% Similarity=0.039 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCC
Q 020373 36 ALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQM 112 (327)
Q Consensus 36 ~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~ 112 (327)
...+.++.-...|-.|+|....=| ++..+.-+-.-.-+-|+ -..--+...+.+...+...+++. +.+|+
T Consensus 16 nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gi-------e~i~HLTCrd~n~~~L~~~L~~a-~~~GI 87 (565)
T PLN02540 16 NLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICV-------ETMMHLTCTNMPVEKIDHALETI-KSNGI 87 (565)
T ss_pred HHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCC-------CeeEEeeecCCCHHHHHHHHHHH-HHCCC
Confidence 334455555678999999776655 34444333221100122 11222223456666677666665 77887
Q ss_pred CccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHc-CCcCeEEecCCCh---------------
Q 020373 113 EYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRL-GLTKSIGLSNFSC--------------- 176 (327)
Q Consensus 113 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-Gkir~iGvs~~~~--------------- 176 (327)
. .++.|..-.+... +. . ......+..+.+-++.+++. |..-.|||+.+..
T Consensus 88 r--NILALrGDpp~~~-d~-~----------~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~ 153 (565)
T PLN02540 88 Q--NILALRGDPPHGQ-DK-F----------VQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPE 153 (565)
T ss_pred C--EEEEECCCCCCCC-CC-c----------CCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCC
Confidence 6 5666765322111 00 0 00001122344444555554 5566788886641
Q ss_pred ---HHHHHHHhh--CCCCCcccccccCcccchHHHHHHHHhcC--CEEEE
Q 020373 177 ---KKIDTILTF--ATIPPSINQVEMHPVWQQRKLREFCKVKG--MNVTA 219 (327)
Q Consensus 177 ---~~l~~~~~~--~~~~~~~~q~~~~~~~~~~~l~~~~~~~g--i~via 219 (327)
.++..+.+. ++.++.+-|.-|..- .-...++.|++.| +.|++
T Consensus 154 ~~~~dl~~Lk~KvdAGAdFiITQlfFD~d-~f~~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 154 AYQKDLAYLKEKVDAGADLIITQLFYDTD-IFLKFVNDCRQIGITCPIVP 202 (565)
T ss_pred ChHHHHHHHHHHHHcCCCEEeeccccCHH-HHHHHHHHHHhcCCCCCEEe
Confidence 234444332 445667777766531 1146788899998 45544
No 164
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=28.82 E-value=5.2e+02 Score=24.70 Aligned_cols=114 Identities=20% Similarity=0.141 Sum_probs=65.3
Q ss_pred eCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCch
Q 020373 53 DTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEE 132 (327)
Q Consensus 53 DTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~ 132 (327)
+..-.||.++.|-++|++..+.- +.+-++|.|-+.. ..-.+.+..-+++.-++.+ +.++.+|.|......
T Consensus 63 E~d~VfGg~~~L~~~i~~~~~~~---~P~~i~v~~tC~~-~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~--- 132 (410)
T cd01968 63 EKDVIFGGEKKLYKAILEIIERY---HPKAVFVYSTCVV-ALIGDDIDAVCKTASEKFG---IPVIPVHSPGFVGNK--- 132 (410)
T ss_pred ccceeeccHHHHHHHHHHHHHhC---CCCEEEEECCCch-hhhccCHHHHHHHHHHhhC---CCEEEEECCCcccCh---
Confidence 44456888999999998876542 5566778877632 2223344444444333443 578889987653320
Q ss_pred hhhccCCCCCCCCCCCCHHHHHHHHHHHH-H--------cCCcCeEEecCCC--hHHHHHHHhhCCCCC
Q 020373 133 EEVGMSLPNKEDLSPLDYKGVWEAMEESQ-R--------LGLTKSIGLSNFS--CKKIDTILTFATIPP 190 (327)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~--------~Gkir~iGvs~~~--~~~l~~~~~~~~~~~ 190 (327)
....+.++++|-+.. . ++.|--||-.++. ..++.++++..++++
T Consensus 133 --------------~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v 187 (410)
T cd01968 133 --------------NLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRV 187 (410)
T ss_pred --------------hHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeE
Confidence 011333444443332 1 4567777744433 457888888777653
No 165
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=28.70 E-value=2.6e+02 Score=26.26 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=39.1
Q ss_pred cCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch---HHHHHHHHhcCCEEEEeccCC
Q 020373 166 TKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ---RKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 166 ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~via~~~l~ 224 (327)
++-.-+...+.+.+++++.. +.+.+++..+.|+.... +++.+.|+++|+.++.=..++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 44444544567777777643 34455566677876542 678999999999998876663
No 166
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=28.62 E-value=1.3e+02 Score=28.87 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccch---HHHHHHHHhcC-CEEEEeccCCC
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQ---RKLREFCKVKG-MNVTAYSPLGA 225 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~g-i~via~~~l~~ 225 (327)
+.++.+.++++....-|...=+...+.+.++++++. ..+.++...+-|+...- ..+.+.|+++| +.+++=+.++.
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 477888888866655555333444467888888875 55667788888887653 67899999999 99999988865
No 167
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=28.53 E-value=3.4e+02 Score=22.49 Aligned_cols=74 Identities=16% Similarity=0.044 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCccc-------chHHHHHHHHhcCCEEEEecc
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW-------QQRKLREFCKVKGMNVTAYSP 222 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~-------~~~~l~~~~~~~gi~via~~~ 222 (327)
.+++++.--+=-++.-|++|=|.+.+.....++++...-+..++-+-++.-. .+.++-+..+++|..|..-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 4666666555556777999999988888777777766543223322332221 136788889999999887553
Q ss_pred C
Q 020373 223 L 223 (327)
Q Consensus 223 l 223 (327)
.
T Consensus 92 a 92 (186)
T COG1751 92 A 92 (186)
T ss_pred h
Confidence 3
No 168
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=28.39 E-value=3e+02 Score=26.41 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCc--C-eEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEEe
Q 020373 154 WEAMEESQRLGLT--K-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTAY 220 (327)
Q Consensus 154 ~~~l~~l~~~Gki--r-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~ 220 (327)
++.+.+|++.-.+ . .-|-+.++...+..+++...+ +++|....-.- .-.++.+.|+.+|+.++.+
T Consensus 248 ~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~--Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 248 YWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCI--DIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred HHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCC--CEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 5667777776442 2 236777778888888876543 46666655432 2267888899999887654
No 169
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=28.37 E-value=3.4e+02 Score=26.05 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcCeEEecC-----CC-----hHHHHHHHhhC-CCCCcccccccC---cccchHHHHHHH
Q 020373 145 LSPLDYKGVWEAMEESQRLGLTKSIGLSN-----FS-----CKKIDTILTFA-TIPPSINQVEMH---PVWQQRKLREFC 210 (327)
Q Consensus 145 ~~~~~~~~~~~~l~~l~~~Gkir~iGvs~-----~~-----~~~l~~~~~~~-~~~~~~~q~~~~---~~~~~~~l~~~~ 210 (327)
+.....+.+.+.++.+++.| ++.|-+.. +. ...+.++++.. ..+. ...+.+. +..-..++++..
T Consensus 164 ~r~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~-~~~ir~~~~~p~~~~~ell~~m 241 (414)
T TIGR01579 164 SRSVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPG-IKRIRLSSIDPEDIDEELLEAI 241 (414)
T ss_pred CccCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCC-CcEEEEeCCChhhCCHHHHHHH
Confidence 44566899999999999987 56665432 21 12344444322 1111 1112222 222236788888
Q ss_pred HhcC-C-EEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHh--cC----cEEEeCC--CCHHHHHHh
Q 020373 211 KVKG-M-NVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVE--QG----VTVVVRS--LNPERLKQN 280 (327)
Q Consensus 211 ~~~g-i-~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~--~~----~~~i~g~--~~~~~l~en 280 (327)
++.+ + ..+- -++- ...++.++.+.+.+...-..-+++.+.+ .+ ...|+|. .+.+.+++.
T Consensus 242 ~~~~~~~~~l~-lglE----------Sgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~t 310 (414)
T TIGR01579 242 ASEKRLCPHLH-LSLQ----------SGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQET 310 (414)
T ss_pred HhcCccCCCeE-ECCC----------cCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHH
Confidence 8754 2 2221 1221 1234455555444433334445555555 33 3456663 456666655
Q ss_pred hcc
Q 020373 281 LGI 283 (327)
Q Consensus 281 l~a 283 (327)
++.
T Consensus 311 l~~ 313 (414)
T TIGR01579 311 LRM 313 (414)
T ss_pred HHH
Confidence 543
No 170
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=27.88 E-value=2.8e+02 Score=24.28 Aligned_cols=44 Identities=18% Similarity=0.081 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCC-------hHHHHHHHhhCCCCCccc
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFS-------CKKIDTILTFATIPPSIN 193 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~-------~~~l~~~~~~~~~~~~~~ 193 (327)
+..=+++-.+++++|||+++=+|.-+ +..+.+.+-..+++...+
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i 128 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNI 128 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHe
Confidence 34446778899999999999988644 333444444445544333
No 171
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=27.72 E-value=3.9e+02 Score=22.88 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCC----------CCcC-----CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChh
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTA----------AIYG-----TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHD 97 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA----------~~Yg-----sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~ 97 (327)
+.++..+..+.+.++|+..+|-- +.|| ..+.+-+.++...+ .. . +-|+.|+.......+
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~-~~--~---~~v~vk~r~~~~~~~ 138 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE-AV--P---IPVTVKIRLGWDDEE 138 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHH-hc--C---CCEEEEEeeccCCch
Confidence 56777888888889999999742 4466 34455565655421 11 1 345566522111111
Q ss_pred hHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCC-Ch
Q 020373 98 RVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNF-SC 176 (327)
Q Consensus 98 ~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~-~~ 176 (327)
...+ +-+.|+..|+ |.+.+|....... .. ....|+.+.++++.-.+--++..+. +.
T Consensus 139 ~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~----------------~~---~~~~~~~~~~i~~~~~ipvi~~Ggi~~~ 195 (231)
T cd02801 139 ETLE-LAKALEDAGA---SALTVHGRTREQR----------------YS---GPADWDYIAEIKEAVSIPVIANGDIFSL 195 (231)
T ss_pred HHHH-HHHHHHHhCC---CEEEECCCCHHHc----------------CC---CCCCHHHHHHHHhCCCCeEEEeCCCCCH
Confidence 2222 2233555675 5556775421100 00 0113566677777767776766665 47
Q ss_pred HHHHHHHhhCCCC
Q 020373 177 KKIDTILTFATIP 189 (327)
Q Consensus 177 ~~l~~~~~~~~~~ 189 (327)
++++++++....+
T Consensus 196 ~d~~~~l~~~gad 208 (231)
T cd02801 196 EDALRCLEQTGVD 208 (231)
T ss_pred HHHHHHHHhcCCC
Confidence 7777777754433
No 172
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=27.60 E-value=80 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYG 59 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~Yg 59 (327)
.+.....+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 4567788889999999999999999984
No 173
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=27.59 E-value=4.5e+02 Score=23.57 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=55.1
Q ss_pred CChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC-cCeEEec
Q 020373 94 AHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL-TKSIGLS 172 (327)
Q Consensus 94 ~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk-ir~iGvs 172 (327)
++.+. +..+-+.|.++|++.|.+-. |... .+-+++.+.+.+.++ .+-.+..
T Consensus 19 ~s~~~-k~~i~~~L~~~Gv~~IEvG~---P~~~------------------------~~~~~~~~~l~~~~~~~~v~~~~ 70 (262)
T cd07948 19 FDTED-KIEIAKALDAFGVDYIELTS---PAAS------------------------PQSRADCEAIAKLGLKAKILTHI 70 (262)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEEC---CCCC------------------------HHHHHHHHHHHhCCCCCcEEEEe
Confidence 33443 44455559999998888763 4221 233445555554443 3445556
Q ss_pred CCChHHHHHHHhhCCCCCcccccccCccc--------c-h-----HHHHHHHHhcCCEEEEec
Q 020373 173 NFSCKKIDTILTFATIPPSINQVEMHPVW--------Q-Q-----RKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--------~-~-----~~l~~~~~~~gi~via~~ 221 (327)
....+.++.+.+. +++...+-++.|... . + .+.+++++++|+.+...-
T Consensus 71 r~~~~di~~a~~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 71 RCHMDDARIAVET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred cCCHHHHHHHHHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6677888888874 444222222222211 0 1 346788999998876543
No 174
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=27.55 E-value=5.8e+02 Score=24.81 Aligned_cols=146 Identities=14% Similarity=0.050 Sum_probs=80.5
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCCCCC-CceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchh
Q 020373 55 AAIYGTEKALGEAIAEALRLGLVTSR-EQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEE 133 (327)
Q Consensus 55 A~~YgsE~~lG~aL~~~~~~~~~~~R-~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~ 133 (327)
.-.||.++.|-++|++..+.. ++ +-++|.|-+.. ...-+.+..-+++.-++.+ +.++.+|.|.......
T Consensus 96 d~V~Gg~~~L~~aI~~~~~~~---~p~~~I~V~~tC~~-~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~--- 165 (443)
T TIGR01862 96 DIVFGGEKKLKKLIHEAFTEF---PLIKAISVYATCPT-GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQ--- 165 (443)
T ss_pred ceeeCcHHHHHHHHHHHHHhC---CccceEEEECCChH-HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCcc---
Confidence 345788888889998776533 44 66778877632 2223445555554444554 6899999886643210
Q ss_pred hhccCCCCCCCCCCCCHHHHHHH-HHHHH--------HcCCcCeEEecCCC--hHHHHHHHhhCCCCCccc---------
Q 020373 134 EVGMSLPNKEDLSPLDYKGVWEA-MEESQ--------RLGLTKSIGLSNFS--CKKIDTILTFATIPPSIN--------- 193 (327)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~-l~~l~--------~~Gkir~iGvs~~~--~~~l~~~~~~~~~~~~~~--------- 193 (327)
......+.++ ++.+. ++++|--||-.++. .+++.++++..++++...
T Consensus 166 -------------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~ee 232 (443)
T TIGR01862 166 -------------SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDE 232 (443)
T ss_pred -------------chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHH
Confidence 0012333333 33443 24667777754443 457888888777554321
Q ss_pred -----ccccCcc-cch--HHHHHHH-HhcCCEEEEeccC
Q 020373 194 -----QVEMHPV-WQQ--RKLREFC-KVKGMNVTAYSPL 223 (327)
Q Consensus 194 -----q~~~~~~-~~~--~~l~~~~-~~~gi~via~~~l 223 (327)
...+|+. .+. ....++. ++.|++++...|+
T Consensus 233 i~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 233 IRLMHKAKLNLVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred HHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 1112222 111 2233444 4669999987765
No 175
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=27.38 E-value=5e+02 Score=24.02 Aligned_cols=133 Identities=12% Similarity=0.130 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHHcCCCEEeC----------CCCcC-----CHHHHHHHHHHHHhcCCCCCCCceEEeecCC--CCCC
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDT----------AAIYG-----TEKALGEAIAEALRLGLVTSREQLFITSKLW--CHNA 94 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDT----------A~~Yg-----sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~--~~~~ 94 (327)
.+.++..+..+.+.+.|+..||. ...+| ..+.+.+.++...+ . -++-|+.|+. ...
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~-a-----~d~pv~vKiR~G~~~- 146 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVN-A-----VDVPVTLKIRTGWAP- 146 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHH-h-----cCCceEEEEEccccC-
Confidence 46677777777788899999993 22344 24555565654421 1 1344666762 221
Q ss_pred ChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCC
Q 020373 95 HHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNF 174 (327)
Q Consensus 95 ~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~ 174 (327)
+..... .+-+-++..|. |.+.+|.-..... +.. ..-|+.+.++++.=.|--||....
T Consensus 147 ~~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~----------------~~G---~a~~~~i~~ik~~~~iPVI~nGgI 203 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCGI---QALTIHGRTRACL----------------FNG---EAEYDSIRAVKQKVSIPVIANGDI 203 (321)
T ss_pred CcchHH-HHHHHHHHhCC---CEEEEecCccccc----------------cCC---CcChHHHHHHHHhcCCcEEEeCCC
Confidence 111122 23334667775 6677885321110 000 112677778887767888887776
Q ss_pred -ChHHHHHHHhhCCCCCcccccc
Q 020373 175 -SCKKIDTILTFATIPPSINQVE 196 (327)
Q Consensus 175 -~~~~l~~~~~~~~~~~~~~q~~ 196 (327)
++++++++++..+.+ .+++-
T Consensus 204 ~s~~da~~~l~~~gad--gVmiG 224 (321)
T PRK10415 204 TDPLKARAVLDYTGAD--ALMIG 224 (321)
T ss_pred CCHHHHHHHHhccCCC--EEEEC
Confidence 477888888765544 44443
No 176
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.19 E-value=1.9e+02 Score=24.00 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHcC-CcCeEEecCCC--hHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEE
Q 020373 149 DYKGVWEAMEESQRLG-LTKSIGLSNFS--CKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 149 ~~~~~~~~l~~l~~~G-kir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via 219 (327)
...+++++|.++++.| +|..+|..+.. ...+.+++ ++ .+.++.|+....-...+..+++.|+.++.
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T---EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CC--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 3577888888888666 55555555554 23444444 22 34444554322225678889999999887
No 177
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=27.10 E-value=4.5e+02 Score=23.38 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCC
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTA 55 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA 55 (327)
.+.++..++++.-.+.||..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 467888899999999999999987
No 178
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.08 E-value=2.9e+02 Score=21.23 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=13.7
Q ss_pred hHHHHHHHHhcCCEEEEe
Q 020373 203 QRKLREFCKVKGMNVTAY 220 (327)
Q Consensus 203 ~~~l~~~~~~~gi~via~ 220 (327)
++++.++|+++|+.++.-
T Consensus 91 ~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 91 SEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHcCCEEEeC
Confidence 468899999999999863
No 179
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=26.71 E-value=1.5e+02 Score=21.70 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEec
Q 020373 152 GVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 152 ~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~ 221 (327)
.+...|...++.|++. +|+ .+..+.+...+...+++--+.++.....-+..+|++++|+++-..
T Consensus 2 ~i~~~l~~a~~~~~lv-~G~-----~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 2 KIYKLLKLARKAGRLV-KGI-----KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHHSEEE-ESH-----HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHHhcCCEE-Ech-----HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 3456677777777743 554 456777777666666655555543333337789999999997643
No 180
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=26.65 E-value=2.1e+02 Score=21.50 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=41.6
Q ss_pred HHHHHHcCCcCeEEecCCChHHH---HHHHhhCCCCCcccccccCcccch-HHHHHHHHhcCCEEEE
Q 020373 157 MEESQRLGLTKSIGLSNFSCKKI---DTILTFATIPPSINQVEMHPVWQQ-RKLREFCKVKGMNVTA 219 (327)
Q Consensus 157 l~~l~~~Gkir~iGvs~~~~~~l---~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~via 219 (327)
++++.+...+..+-|++-+..+. ..+++... .++..-|+..-..+ +++++.|+++|+.++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 56677766899999998886554 44455443 45556565543333 7899999999988754
No 181
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=26.27 E-value=5.1e+02 Score=25.27 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=34.2
Q ss_pred CCcCeEEe-----cCCChHHHHHHHhhCC--CC--C-cccccccCcccchHHHHHHHHhcCCEEEEeccC
Q 020373 164 GLTKSIGL-----SNFSCKKIDTILTFAT--IP--P-SINQVEMHPVWQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 164 Gkir~iGv-----s~~~~~~l~~~~~~~~--~~--~-~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l 223 (327)
+.|+.|=+ |..+++++.++++... ++ . .-+-++.++-.-..+.++.+++.|+.-+..+.-
T Consensus 113 ~~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQ 182 (449)
T PRK09058 113 APIHAVYFGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQ 182 (449)
T ss_pred CeeeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCC
Confidence 45666633 2334677777766442 11 1 112233344333478899999999988765544
No 182
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=26.22 E-value=1.5e+02 Score=28.43 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcC-CcCeEEecCCC---hHHHHHHHhhCCCCCcccc---cccCcccchHHHHHHHHhcCCEEEEec
Q 020373 150 YKGVWEAMEESQRLG-LTKSIGLSNFS---CKKIDTILTFATIPPSINQ---VEMHPVWQQRKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 150 ~~~~~~~l~~l~~~G-kir~iGvs~~~---~~~l~~~~~~~~~~~~~~q---~~~~~~~~~~~l~~~~~~~gi~via~~ 221 (327)
...+++.+..|.++| .|.++.|.... .++|++++....+ .+.++ .+.....+=.++-+.|+++|+.+..-.
T Consensus 101 H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~-LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDA 178 (386)
T COG1104 101 HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTI-LVSIMHANNETGTIQPIAEIGEICKERGILFHVDA 178 (386)
T ss_pred cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCce-EEEEEecccCeeecccHHHHHHHHHHcCCeEEEeh
Confidence 467889999998888 79999888765 6667777653321 22222 222222333789999999997665543
No 183
>PRK10799 metal-binding protein; Provisional
Probab=26.14 E-value=1e+02 Score=27.37 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=18.7
Q ss_pred HHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHh
Q 020373 41 VLEAIKLGYRHFDTAAIYGTEKALGEAIAEALR 73 (327)
Q Consensus 41 l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~ 73 (327)
...|.+.|++.+|.. +|.+|...=+.|++.++
T Consensus 200 ~~~A~~~gl~li~~G-H~~sE~~~~~~la~~L~ 231 (247)
T PRK10799 200 IHSAREQGLHFYAAG-HHATERGGIRALSEWLN 231 (247)
T ss_pred HHHHHHCCCeEEEcC-chHHHHHHHHHHHHHHH
Confidence 455677777777744 66566664444444433
No 184
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.10 E-value=5.5e+02 Score=24.01 Aligned_cols=64 Identities=8% Similarity=0.084 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEE
Q 020373 154 WEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTA 219 (327)
Q Consensus 154 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via 219 (327)
++.+.++++.--|. +.|=+.++..++..+++...+ .++|...+-.- .-.++.++|+.+|+.++.
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~--d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~ 293 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAGAC--DLVMPDLMKIGGVTGWLRASALAEQAGIPMSS 293 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCC--CeEecCHhhhCCHHHHHHHHHHHHHcCCeecc
Confidence 56677777764433 566777888888888876543 46666555432 226789999999999864
No 185
>PRK05660 HemN family oxidoreductase; Provisional
Probab=26.01 E-value=5.7e+02 Score=24.21 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred CCccccccCccC----------CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 020373 20 MPVIGLGCGVGK----------SNLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKL 89 (327)
Q Consensus 20 vs~lglG~~~~~----------~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~ 89 (327)
+.+|.+|.-.+. -+.+++.+.++.+.+.|+..+..-=+| |+
T Consensus 118 v~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~----------------Gl------------- 168 (378)
T PRK05660 118 VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMH----------------GL------------- 168 (378)
T ss_pred CCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeec----------------CC-------------
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHH----HHHHcCC
Q 020373 90 WCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAME----ESQRLGL 165 (327)
Q Consensus 90 ~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~l~~~Gk 165 (327)
+..+.+.+.+.++..++ ++.++|.+|.+--.....- ........+.++.|+.++ .|.+.|.
T Consensus 169 --pgqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l------------~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy 233 (378)
T PRK05660 169 --PDQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLF------------GSRPPVLPDDDALWDIFEQGHQLLTAAGY 233 (378)
T ss_pred --CCCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcc------------cccCCCCcCHHHHHHHHHHHHHHHHHcCC
Q ss_pred cCeEEecCCC
Q 020373 166 TKSIGLSNFS 175 (327)
Q Consensus 166 ir~iGvs~~~ 175 (327)
..+++|||.
T Consensus 234 -~~yei~~fa 242 (378)
T PRK05660 234 -QQYETSAYA 242 (378)
T ss_pred -cEeeccccc
No 186
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=26.00 E-value=4.7e+02 Score=23.24 Aligned_cols=91 Identities=13% Similarity=0.185 Sum_probs=55.6
Q ss_pred HHHHHcCCcCeEEecCCC---hHHHHHHHhhCC-----CCC-cccccccCcccch-----HHHHHHHHhcCCEEEEeccC
Q 020373 158 EESQRLGLTKSIGLSNFS---CKKIDTILTFAT-----IPP-SINQVEMHPVWQQ-----RKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 158 ~~l~~~Gkir~iGvs~~~---~~~l~~~~~~~~-----~~~-~~~q~~~~~~~~~-----~~l~~~~~~~gi~via~~~l 223 (327)
.+..+.|.=-++++.-|+ +..++.++.... -+. .+-.+.+.....+ ++-++.|++.+++++.+.|=
T Consensus 57 ~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr 136 (254)
T COG1099 57 ERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPR 136 (254)
T ss_pred hhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 345677877778887777 333444433221 111 2334444443332 45688999999999999998
Q ss_pred CCCCCCCCCCCcCChHHHHHHHHHhCCCHHHHH
Q 020373 224 GAVGTRWGSNQVMENEALKQIAEAHGKTVAQVS 256 (327)
Q Consensus 224 ~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~a 256 (327)
.. ..-.-...-+++..+|..+.++.
T Consensus 137 ~n--------K~e~t~~ildi~~~~~l~~~lvv 161 (254)
T COG1099 137 RN--------KKEATSKILDILIESGLKPSLVV 161 (254)
T ss_pred Cc--------chhHHHHHHHHHHHcCCChhhee
Confidence 64 12223556677788888776654
No 187
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=25.89 E-value=4.1e+02 Score=23.66 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC------CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCC---Ch------
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYG------TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNA---HH------ 96 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~Yg------sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~---~~------ 96 (327)
.+++++.+++.--...||+-=-.++.-| .|.-+.+|+.-.-..|+ ||+++.=..++++.+. +|
T Consensus 28 L~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL~~~Gl--Pr~~f~~l~d~Fp~dgLVsSP~eEkaR 105 (246)
T COG4669 28 LSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNGL--PRKKFTTLGDIFPKDGLVSSPTEEKAR 105 (246)
T ss_pred CCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHHHHHHHHHHHHhcCC--CCCCCCcHHHhCCcccccCCcHHHHHH
Confidence 6889999999999999999887777665 47788888876656688 8888766666665542 22
Q ss_pred --hhHHHHHHHHHHHhC
Q 020373 97 --DRVIPAIKKSLSALQ 111 (327)
Q Consensus 97 --~~i~~~~~~SL~rLg 111 (327)
..+.++++++|+++.
T Consensus 106 ~~~~~eQ~le~tLs~mD 122 (246)
T COG4669 106 LNYAKEQQLEQTLSKMD 122 (246)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 236678888998873
No 188
>PRK13561 putative diguanylate cyclase; Provisional
Probab=25.75 E-value=7.2e+02 Score=25.25 Aligned_cols=116 Identities=11% Similarity=0.174 Sum_probs=68.8
Q ss_pred eEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020373 83 LFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQR 162 (327)
Q Consensus 83 ~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 162 (327)
+.|+--+.........+...+.+.|++.+.+- .-+.+--+.... ..+.+.+.+.++++++
T Consensus 486 ~~~~iNlS~~~l~~~~f~~~l~~~l~~~~~~~-~~l~lEi~E~~~-------------------~~~~~~~~~~~~~l~~ 545 (651)
T PRK13561 486 LPLSVNLSALQLMHPNMVADMLELLTRYRIQP-GTLILEVTESRR-------------------IDDPHAAVAILRPLRN 545 (651)
T ss_pred ceEEEECCHHHHCCchHHHHHHHHHHHcCCCh-HHEEEEEchhhh-------------------hcCHHHHHHHHHHHHH
Confidence 34444444444444567888889998888653 444455432111 1235778889999999
Q ss_pred cCCcCeEEecCCCh--HHHHHHHhhCCCCCcccccccCccc-----ch--HHHHHHHHhcCCEEEEe
Q 020373 163 LGLTKSIGLSNFSC--KKIDTILTFATIPPSINQVEMHPVW-----QQ--RKLREFCKVKGMNVTAY 220 (327)
Q Consensus 163 ~Gkir~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~-----~~--~~l~~~~~~~gi~via~ 220 (327)
.|- .|++.+|.. ..+..+......+++.+-+.-+... +. +.++..|+..|+.++|-
T Consensus 546 ~G~--~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe 610 (651)
T PRK13561 546 AGV--RVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE 610 (651)
T ss_pred CCC--EEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 998 677777762 3344443322234444333222111 11 56889999999999983
No 189
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.70 E-value=4.4e+02 Score=22.76 Aligned_cols=102 Identities=16% Similarity=0.089 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCC-CCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCC
Q 020373 149 DYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFAT-IPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVG 227 (327)
Q Consensus 149 ~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G 227 (327)
+.+++.+..+.|.+.| |+.|=|+.-++..++.+.+... ++ .+. +-..-. .+.+.++.|.+.|-.++. ||-.
T Consensus 14 ~~~~a~~ia~al~~gG-i~~iEit~~tp~a~~~I~~l~~~~~-~~~-vGAGTV-l~~e~a~~ai~aGA~Fiv-SP~~--- 85 (201)
T PRK06015 14 DVEHAVPLARALAAGG-LPAIEITLRTPAALDAIRAVAAEVE-EAI-VGAGTI-LNAKQFEDAAKAGSRFIV-SPGT--- 85 (201)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEEeCCCccHHHHHHHHHHHCC-CCE-EeeEeC-cCHHHHHHHHHcCCCEEE-CCCC---
Confidence 3567777777777765 6777777666554443322111 11 110 000000 124566778888888776 3322
Q ss_pred CCCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcCcEEEeCCCCHHHHHHhhcc
Q 020373 228 TRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGI 283 (327)
Q Consensus 228 ~l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~~~~i~g~~~~~~l~enl~a 283 (327)
++.+ ++++.++++..+||+.++.++...+++
T Consensus 86 ----------~~~v---------------i~~a~~~~i~~iPG~~TptEi~~A~~~ 116 (201)
T PRK06015 86 ----------TQEL---------------LAAANDSDVPLLPGAATPSEVMALREE 116 (201)
T ss_pred ----------CHHH---------------HHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 2333 444555555566666666666665544
No 190
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=25.59 E-value=6.6e+02 Score=24.81 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCcCe----EEecCCChHHHHHHHhhCC-CCCcccccccCcccchHHHHHHHHhcCC
Q 020373 149 DYKGVWEAMEESQRLGLTKS----IGLSNFSCKKIDTILTFAT-IPPSINQVEMHPVWQQRKLREFCKVKGM 215 (327)
Q Consensus 149 ~~~~~~~~l~~l~~~Gkir~----iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~l~~~~~~~gi 215 (327)
..++..++++.+++.|..-. +|+-+-+.+.+++.++... .++...++..-...+...+.+.+++.+.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHHHHHhhcc
Confidence 46778899999999986433 3555666666665555432 3444443322112334567777766653
No 191
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=25.56 E-value=3.1e+02 Score=24.20 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=42.6
Q ss_pred hHHHHHHHhhCCCCCccc--ccccCcccch-----HHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcC-----ChHHHHH
Q 020373 176 CKKIDTILTFATIPPSIN--QVEMHPVWQQ-----RKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVM-----ENEALKQ 243 (327)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~--q~~~~~~~~~-----~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~-----~~~~l~~ 243 (327)
+.++..+.+.+++.++.+ -.++|.+..+ .++.++++.-|-.-+...|+.. |...+..... .-+.++.
T Consensus 51 ~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd-~s~~~~~vr~~~lv~AlkaLkp 129 (272)
T COG4130 51 AAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLND-GSWPGTAVRREDLVEALKALKP 129 (272)
T ss_pred HHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccC-CCCCCcccchHHHHHHHHHhhH
Confidence 455555555555443322 2355655543 5689999999998888889976 5543221111 1245555
Q ss_pred HHHHhCC
Q 020373 244 IAEAHGK 250 (327)
Q Consensus 244 la~~~g~ 250 (327)
+-+++|+
T Consensus 130 il~~~gi 136 (272)
T COG4130 130 ILDEYGI 136 (272)
T ss_pred HHHHhCc
Confidence 6666654
No 192
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=25.46 E-value=2e+02 Score=22.04 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=31.0
Q ss_pred ecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCC
Q 020373 171 LSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 171 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~ 224 (327)
.+..+.+++..++........++-..-+......++.++++++||++..+..-+
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~a 89 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGA 89 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHH
Confidence 445566667666654312222222222222334778899999999998876543
No 193
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=25.25 E-value=5.4e+02 Score=23.65 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYG---TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLS 108 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~ 108 (327)
.+.++..++++.+.+.|++.+.-.. | -..-+-+.++...+.+ .-..+.|+|-.. .+.+. -..|.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i~~~~---~~~~i~itTNG~-------ll~~~-~~~L~ 115 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAALAALP---GIRDLALTTNGY-------LLARR-AAALK 115 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHHHhcC---CCceEEEEcCch-------hHHHH-HHHHH
Confidence 4678888999999999998876432 2 1112334444321111 123577777641 12222 23355
Q ss_pred HhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCC-CCCCHHHHHHHHHHHHHcCC
Q 020373 109 ALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDL-SPLDYKGVWEAMEESQRLGL 165 (327)
Q Consensus 109 rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~Gk 165 (327)
..|++.|- +-+|..++..- ..+ ....++.++++++.+++.|.
T Consensus 116 ~agl~~i~-ISlds~~~e~~--------------~~i~~~~~~~~vl~~i~~~~~~g~ 158 (331)
T PRK00164 116 DAGLDRVN-VSLDSLDPERF--------------KAITGRDRLDQVLAGIDAALAAGL 158 (331)
T ss_pred HcCCCEEE-EEeccCCHHHh--------------ccCCCCCCHHHHHHHHHHHHHCCC
Confidence 55665442 33343321100 000 11347889999999999875
No 194
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=25.15 E-value=2.7e+02 Score=26.96 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHc------CCcCeEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEEecc
Q 020373 152 GVWEAMEESQRL------GLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTAYSP 222 (327)
Q Consensus 152 ~~~~~l~~l~~~------Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~ 222 (327)
+.++.|.+|++. ..=-..+-|.++.+.+.++++.... .++|+..+-.- .-.++.++|+.+||.++..+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~--d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAG--HMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCC--CEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 346667777765 3333556777788888888876543 46776665432 237789999999999998765
Q ss_pred C
Q 020373 223 L 223 (327)
Q Consensus 223 l 223 (327)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 5
No 195
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=25.02 E-value=8.8e+02 Score=26.03 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCc
Q 020373 35 NALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEY 114 (327)
Q Consensus 35 ~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~ 114 (327)
+-+.+++++|.|.|+..+- .|..|..+. +... +-|+-|+..+...+-..+=.|.+-+ +.-++-|.
T Consensus 17 EIAIRvFRAa~ELgi~TVA---Iys~ED~~S--~HR~-------KADEsY~iG~~~~Pi~aYL~IdeII-~iAk~~ga-- 81 (1149)
T COG1038 17 EIAIRVFRAANELGIKTVA---IYSEEDRLS--LHRF-------KADESYLIGEGKGPVEAYLSIDEII-RIAKRSGA-- 81 (1149)
T ss_pred hhhHHHHHHHHhcCceEEE---Eeeccccch--hhhc-------cccceeeecCCCCchHHhccHHHHH-HHHHHcCC--
Confidence 6789999999999999873 786554422 3322 6677777776533322222222222 22334454
Q ss_pred cceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHH---------Hhh
Q 020373 115 LDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTI---------LTF 185 (327)
Q Consensus 115 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~---------~~~ 185 (327)
|. +| |...- +.+-.+.-+++.++| |.+||=+ ++.++.+ ...
T Consensus 82 -Da--Ih-PGYGf----------------------LSEn~efA~~c~eaG-I~FIGP~---~e~ld~~GdKv~Ar~~A~~ 131 (1149)
T COG1038 82 -DA--IH-PGYGF----------------------LSENPEFARACAEAG-ITFIGPK---PEVLDMLGDKVKARNAAIK 131 (1149)
T ss_pred -Ce--ec-CCccc----------------------ccCCHHHHHHHHHcC-CEEeCCC---HHHHHHhccHHHHHHHHHH
Confidence 54 56 22110 123344456667777 5578843 4444322 222
Q ss_pred CCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCC
Q 020373 186 ATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 186 ~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~ 225 (327)
++++ ++.-.--+...-+++.+++++.|-+++.-..+++
T Consensus 132 agvP--vipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GG 169 (1149)
T COG1038 132 AGVP--VIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGG 169 (1149)
T ss_pred cCCC--ccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCC
Confidence 3333 1111111112226899999999999999999987
No 196
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=24.87 E-value=5.6e+02 Score=23.75 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=66.5
Q ss_pred HHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCe-EEecCCC---hHHH
Q 020373 104 KKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKS-IGLSNFS---CKKI 179 (327)
Q Consensus 104 ~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~-iGvs~~~---~~~l 179 (327)
++..++.|. |++-+|-..... .+.+....++.+.|+++.+.=++-- ||=|... +..+
T Consensus 157 rk~Vk~fga---dmvTiHlIsTdP----------------ki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVl 217 (403)
T COG2069 157 RKCVKKFGA---DMVTIHLISTDP----------------KIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVL 217 (403)
T ss_pred HHHHHHhCC---ceEEEEeecCCc----------------cccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHH
Confidence 344567774 788888654221 2223446899999999998877653 4655543 6778
Q ss_pred HHHHhhCCCC-CcccccccCcccchHHHHHHHHhcCCEEEEeccCCC
Q 020373 180 DTILTFATIP-PSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 180 ~~~~~~~~~~-~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~ 225 (327)
+++.+.+.-. +...-.+.++ .-+.+.+.+.++|=.|++|+++--
T Consensus 218 ekaAEvaEGeRclLaSanldl--Dy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 218 EKAAEVAEGERCLLASANLDL--DYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred HHHHHhhcCceEEeecccccc--CHHHHHHHHHhcCceEEEeeccCh
Confidence 8888777532 2222222222 226789999999999999998853
No 197
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.83 E-value=6.1e+02 Score=24.11 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC-cCeEEecCCChH
Q 020373 99 VIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL-TKSIGLSNFSCK 177 (327)
Q Consensus 99 i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk-ir~iGvs~~~~~ 177 (327)
-+..+-+.|.++|+++|.+- +|... +.-++.++.+.+.|. .+-++.+.....
T Consensus 27 ~k~~ia~~L~~~GV~~IE~G---~p~~~------------------------~~~~e~i~~i~~~~~~~~i~~~~r~~~~ 79 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEAG---FPAVS------------------------EDEKEAIKAIAKLGLNASILALNRAVKS 79 (378)
T ss_pred HHHHHHHHHHHhCCCEEEEe---CCCcC------------------------hHHHHHHHHHHhcCCCeEEEEEcccCHH
Confidence 34556667999999999874 34211 222556666666554 444455444466
Q ss_pred HHHHHHhhCCCCCcccccccCcccc--------h------HHHHHHHHhcCCEEEEeccC
Q 020373 178 KIDTILTFATIPPSINQVEMHPVWQ--------Q------RKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 178 ~l~~~~~~~~~~~~~~q~~~~~~~~--------~------~~l~~~~~~~gi~via~~~l 223 (327)
.++.+++. +++...+-++.|.... + .+.+++|+++|..|....+.
T Consensus 80 di~~a~~~-g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed 138 (378)
T PRK11858 80 DIDASIDC-GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAED 138 (378)
T ss_pred HHHHHHhC-CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 77777764 3332222222222211 1 34678899999887654333
No 198
>PRK07328 histidinol-phosphatase; Provisional
Probab=24.79 E-value=5e+02 Score=23.14 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCCEEeCCCCc--------------C-CHHHHHHHHHHHH--hcCCCCCCCceEEeecCCCCCCChhh
Q 020373 36 ALKLAVLEAIKLGYRHFDTAAIY--------------G-TEKALGEAIAEAL--RLGLVTSREQLFITSKLWCHNAHHDR 98 (327)
Q Consensus 36 ~~~~~l~~A~e~Gin~fDTA~~Y--------------g-sE~~lG~aL~~~~--~~~~~~~R~~~~I~tK~~~~~~~~~~ 98 (327)
...++++.|.+.|+..+=.+++. + +...+-..+++.. ++.+ .+=+|++.-=+. .-+ .
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y--~~i~Il~GiE~~---~~~-~ 92 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARF--PDLYVRLGIEAD---YHP-G 92 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHc--CCCeEEEEEEec---ccC-C
Confidence 36789999999999977333221 1 1112223332221 1111 111333333332 222 2
Q ss_pred HHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHH----HHHHHHHHcCCcCeEE
Q 020373 99 VIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVW----EAMEESQRLGLTKSIG 170 (327)
Q Consensus 99 i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~~Gkir~iG 170 (327)
....+++.|++-..||+ +.-+|+.+...-..... ...+...+.++++ +.+.++.+.|.+.-+|
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~--------~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlg 159 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDF--------VAEYEERDLDELYRRYFALVEQAARSGLFDIIG 159 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhH--------HHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 35566667777777777 77789864211100000 0001112233443 4577788888887776
No 199
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=24.67 E-value=5.1e+02 Score=23.67 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=58.2
Q ss_pred HHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHH-----HHHHHHHHHcCCcCeEEecCCChH----
Q 020373 107 LSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGV-----WEAMEESQRLGLTKSIGLSNFSCK---- 177 (327)
Q Consensus 107 L~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~l~~~Gkir~iGvs~~~~~---- 177 (327)
++-++-.++|+..+..+.... ...+. -+.+.+..++--=|++|+.+.++.
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~---------------------~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~ 113 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVA---------------------IIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEA 113 (293)
T ss_pred HhhhcccccceEEeecccccc---------------------chHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHH
Confidence 777888899988888411100 01111 356777888888889999988855
Q ss_pred ---HHHHHHhhCCCCCcccccccCccc-------ch-HHHHHHHHhcCCEEEEeccCC
Q 020373 178 ---KIDTILTFATIPPSINQVEMHPVW-------QQ-RKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 178 ---~l~~~~~~~~~~~~~~q~~~~~~~-------~~-~~l~~~~~~~gi~via~~~l~ 224 (327)
++++.....++ +++.+++.. +. ..+++.|+++|+.|+-+....
T Consensus 114 a~~E~er~v~~~gf----~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 114 AAEELERRVRELGF----VGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred HHHHHHHHHHhcCc----eEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34444444332 222222222 12 568999999999998876654
No 200
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=24.63 E-value=5.9e+02 Score=24.11 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=33.3
Q ss_pred CChHHHHHHHhhCCCCCcccccccCcccc---hHHHHHHHHhcCCEEEEeccCC
Q 020373 174 FSCKKIDTILTFATIPPSINQVEMHPVWQ---QRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~via~~~l~ 224 (327)
.+.+.+++++.. +.+.+++..+.|+... -+.+.+.|+++|+.++.=...+
T Consensus 134 ~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 134 SDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 456777776643 3444555566676433 2778999999999998766554
No 201
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.42 E-value=3.8e+02 Score=25.88 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=61.6
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhC-CCccceeEeecCCCCCCCCchhh
Q 020373 56 AIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQ-MEYLDLYLIHWPISAKPTSEEEE 134 (327)
Q Consensus 56 ~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~ 134 (327)
-.||.|+.+-++|++..+.- +.+-++|.|-+... .--+.+..-+++.-++.. ...+.++.+|.|+.....
T Consensus 61 ~VfGg~~~L~~~i~~~~~~~---~p~~I~V~ttc~~e-iIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~----- 131 (417)
T cd01966 61 TILGGGENLEEALDTLAERA---KPKVIGLLSTGLTE-TRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSL----- 131 (417)
T ss_pred EEECCHHHHHHHHHHHHHhc---CCCEEEEECCCccc-ccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcH-----
Confidence 35788888888888765432 55667888876432 222334444443333311 013678888888654320
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHH-HH--------HHcCCcCeEEecCCC---hHHHHHHHhhCCCCC
Q 020373 135 VGMSLPNKEDLSPLDYKGVWEAME-ES--------QRLGLTKSIGLSNFS---CKKIDTILTFATIPP 190 (327)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~-~l--------~~~Gkir~iGvs~~~---~~~l~~~~~~~~~~~ 190 (327)
...++.++++|. .+ +.+++|-=||-++.+ .+++.++++..++.+
T Consensus 132 ------------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 132 ------------EDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred ------------HHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 011233444432 22 224557777644443 456777777776554
No 202
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=24.40 E-value=3.9e+02 Score=23.05 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=22.9
Q ss_pred HHHHHHcCCcCeEEecCCChHHHHHHHhhCC
Q 020373 157 MEESQRLGLTKSIGLSNFSCKKIDTILTFAT 187 (327)
Q Consensus 157 l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~ 187 (327)
++.+++.|....+=+++|+.+.+..+.+...
T Consensus 109 ~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p 139 (226)
T cd08568 109 LEIVEKFNALDRVIFSSFNHDALRELRKLDP 139 (226)
T ss_pred HHHHHHcCCCCcEEEEECCHHHHHHHHHhCC
Confidence 3444556767788999999999888877543
No 203
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=24.37 E-value=1.3e+02 Score=28.78 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhc--CCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHh
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRL--GLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSAL 110 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~--~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rL 110 (327)
...+..+.++.+++.|+-- ..|+++++. +++.++.++ ++-.+.+.++.+.- +...+.-.++.|
T Consensus 39 ~pp~i~~Al~~rvdhGvfG----Y~~~~~~~~-~ai~~w~~~r~~~~i~~e~i~~~p~----------VVpgi~~~I~~~ 103 (388)
T COG1168 39 TPPEIIEALRERVDHGVFG----YPYGSDELY-AAIAHWFKQRHQWEIKPEWIVFVPG----------VVPGISLAIRAL 103 (388)
T ss_pred CCHHHHHHHHHHHhcCCCC----CCCCCHHHH-HHHHHHHHHhcCCCCCcceEEEcCc----------chHhHHHHHHHh
Confidence 4567788899999999642 345566554 444443321 22113333333322 233333333333
Q ss_pred CCCccceeEeecCC
Q 020373 111 QMEYLDLYLIHWPI 124 (327)
Q Consensus 111 g~d~iDl~~lH~p~ 124 (327)
= +-=|-+.++.|.
T Consensus 104 T-~~gd~Vvi~tPv 116 (388)
T COG1168 104 T-KPGDGVVIQTPV 116 (388)
T ss_pred C-cCCCeeEecCCC
Confidence 2 233777788763
No 204
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=24.08 E-value=2.2e+02 Score=24.29 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHH--HHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHH
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYG-TEKALG--EAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSA 109 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~Yg-sE~~lG--~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~r 109 (327)
++++.....+.|.++|..++=|+.-|. .-..++ +.+++.. +.+ +-.|....-.+.+.+.+-++.-..|
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~-------~~~--v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV-------GGR--VGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-------CCC--ceEEEeCCCCCHHHHHHHHHhChhh
Confidence 567888899999999999999998885 111111 3344331 111 2334422222567777777776777
Q ss_pred hCC
Q 020373 110 LQM 112 (327)
Q Consensus 110 Lg~ 112 (327)
+|+
T Consensus 200 iG~ 202 (203)
T cd00959 200 IGT 202 (203)
T ss_pred ccC
Confidence 775
No 205
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=24.05 E-value=4.8e+02 Score=26.73 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=47.2
Q ss_pred HHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEec-CCChHHHHHHHhhC
Q 020373 108 SALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLS-NFSCKKIDTILTFA 186 (327)
Q Consensus 108 ~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~ 186 (327)
..+|.|++-+++...-.+. ...+.+...+.+....-.++.+||- |-+++.+.++.+..
T Consensus 20 ~~~gaD~iGfIf~~~SpR~---------------------V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~ 78 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRF---------------------VGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKN 78 (610)
T ss_pred HHcCCCEEEEEecCCCCCC---------------------CCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhc
Confidence 3489999998754422111 1223312333332222357789985 66788888888766
Q ss_pred CCCCcccccccCcccchHHHHHHHHhcCCEEE
Q 020373 187 TIPPSINQVEMHPVWQQRKLREFCKVKGMNVT 218 (327)
Q Consensus 187 ~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~vi 218 (327)
. ++++|++-..-......++..++.++.++
T Consensus 79 ~--ld~vQLHG~e~~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 79 G--IDFVQLHGAESKAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred C--CCEEEECCCCCcccHHHHHHhhhcCCcEE
Confidence 4 45788775432111233333444445443
No 206
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=24.00 E-value=2.9e+02 Score=24.62 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHcCCCEE
Q 020373 34 LNALKLAVLEAIKLGYRHF 52 (327)
Q Consensus 34 ~~~~~~~l~~A~e~Gin~f 52 (327)
.+.....++.+.+.||..+
T Consensus 67 ~~~~~~~l~~~~~~giPvV 85 (302)
T TIGR02637 67 PDALVPALKKAMKRGIKVV 85 (302)
T ss_pred hHHHHHHHHHHHHCCCEEE
Confidence 4455667888888998753
No 207
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=23.93 E-value=5.6e+02 Score=23.37 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=55.6
Q ss_pred CChhhHHHHHHHHHHHh---CCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCC-CCHHHHHHHHHHHHHcCCcCe-
Q 020373 94 AHHDRVIPAIKKSLSAL---QMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSP-LDYKGVWEAMEESQRLGLTKS- 168 (327)
Q Consensus 94 ~~~~~i~~~~~~SL~rL---g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~Gkir~- 168 (327)
.+++.+.......++.+ |+.|+|+.+- |..... ..+.. ...+.+.+++.+.+++-.|+.
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~--p~~~~~--------------~~~~~~~~~~~~~~ai~~~~~~~gi~~~ 129 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFS--PQLHTR--------------RGLSFDEVVEAVLRGLDEAEAEFGIKAR 129 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeC--chhhcc--------------CCCCHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 34666666666665544 8889996632 311110 00000 012344667777776654542
Q ss_pred EEec---CCChHHHHHHHhhCC-CCC-cccccccCc----ccch--HHHHHHHHhcCCEEEEec
Q 020373 169 IGLS---NFSCKKIDTILTFAT-IPP-SINQVEMHP----VWQQ--RKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 169 iGvs---~~~~~~l~~~~~~~~-~~~-~~~q~~~~~----~~~~--~~l~~~~~~~gi~via~~ 221 (327)
+.++ +.+.+.+++.++.+. ... .++.+.+.. ...+ ..+++.|+++|+.+..+.
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~ 193 (325)
T cd01320 130 LILCGLRHLSPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHA 193 (325)
T ss_pred EEEEecCCCCHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeC
Confidence 2222 233444555544221 111 122222221 1111 568899999999998874
No 208
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.91 E-value=6.6e+02 Score=24.22 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=64.8
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhh
Q 020373 56 AIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEV 135 (327)
Q Consensus 56 ~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~ 135 (327)
-.||.++.|-++|++..+.- +.+-++|.|-+.. ..--+.+..-+++. ++.+ ++++.+|.|.......
T Consensus 66 ~V~Gg~~kL~~~I~~~~~~~---~p~~I~V~ttC~~-~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~----- 132 (427)
T cd01971 66 IVFGGEDRLRELIKSTLSII---DADLFVVLTGCIA-EIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNY----- 132 (427)
T ss_pred eEeCCHHHHHHHHHHHHHhC---CCCEEEEEcCCcH-HHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccc-----
Confidence 45788888888888765432 5566778777632 22233445444444 4444 6889999887644210
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHH-HHH------cCCcCeEEecC-------CChHHHHHHHhhCCCCCc
Q 020373 136 GMSLPNKEDLSPLDYKGVWEAMEE-SQR------LGLTKSIGLSN-------FSCKKIDTILTFATIPPS 191 (327)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~-l~~------~Gkir~iGvs~-------~~~~~l~~~~~~~~~~~~ 191 (327)
...+.++++|-+ +.. .+.|--||..+ -+.+++.++++..++.+.
T Consensus 133 ------------~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~ 190 (427)
T cd01971 133 ------------AGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVN 190 (427)
T ss_pred ------------cHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEE
Confidence 123344444432 322 34577778542 235778888888876543
No 209
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.89 E-value=3.5e+02 Score=25.51 Aligned_cols=74 Identities=9% Similarity=0.044 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCEEeCCCCcCC-HHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccce
Q 020373 39 LAVLEAIKLGYRHFDTAAIYGT-EKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDL 117 (327)
Q Consensus 39 ~~l~~A~e~Gin~fDTA~~Ygs-E~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl 117 (327)
...+..-+.||+|+-++-.-.+ .++++..|+. + .-+.+.|--.+ +.+.-. +-+-++.+|+=|||-
T Consensus 51 k~~k~~~~~girfV~e~it~~Nyk~vL~pll~~----~---~gqgf~vnLSv---d~~s~D----lmr~crk~~vLYidT 116 (481)
T COG5310 51 KDRKILDERGIRFVQEAITRDNYKDVLKPLLKG----V---GGQGFCVNLSV---DTSSLD----LMRLCRKHGVLYIDT 116 (481)
T ss_pred HHHHHHHhhhhHHHHHhcChhhHHHHHHHHhhc----C---CCceEEEEeEe---ccchhH----HHHHHHHcCeEEEee
Confidence 4455666899999976543222 4455555543 2 45556655444 332333 345567899999998
Q ss_pred eEeecCCCC
Q 020373 118 YLIHWPISA 126 (327)
Q Consensus 118 ~~lH~p~~~ 126 (327)
+.=-|+.++
T Consensus 117 vVEpW~gfy 125 (481)
T COG5310 117 VVEPWLGFY 125 (481)
T ss_pred eeccccccc
Confidence 887777543
No 210
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=23.72 E-value=5.9e+02 Score=23.55 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecC---------CChHHHHHHHhhCCCCCcccccccCcc---cc-hHHHHHHHHhcCCE
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSN---------FSCKKIDTILTFATIPPSINQVEMHPV---WQ-QRKLREFCKVKGMN 216 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~-~~~l~~~~~~~gi~ 216 (327)
...+.+.++.+++-|.++.|.+.+ .+.+.++.+.+ .+.. ..+-++.+.. .. -...++.+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~-~g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKT-SGKT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHH-cCCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 356777788888888776555543 23333444444 3322 2333333311 11 14578889999999
Q ss_pred EEEeccCCC
Q 020373 217 VTAYSPLGA 225 (327)
Q Consensus 217 via~~~l~~ 225 (327)
+...+++..
T Consensus 230 v~~q~vLl~ 238 (321)
T TIGR03822 230 MVSQSVLLR 238 (321)
T ss_pred EEEEeeEeC
Confidence 999888865
No 211
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=23.69 E-value=6.9e+02 Score=24.34 Aligned_cols=59 Identities=10% Similarity=0.187 Sum_probs=34.4
Q ss_pred CcCeEEecC-----CChHHHHHHHhhCC----CCC-cccccccCcccchHHHHHHHHhcCCEEEEeccC
Q 020373 165 LTKSIGLSN-----FSCKKIDTILTFAT----IPP-SINQVEMHPVWQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 165 kir~iGvs~-----~~~~~l~~~~~~~~----~~~-~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l 223 (327)
.|..|-+.. .++++++++++... +.. .-+-++.|+-.-..+.++.+++.|+.-+..+.-
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQ 171 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQ 171 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence 456565432 34677777765432 111 122234444434578999999999887765554
No 212
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=23.60 E-value=3.2e+02 Score=23.88 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCCCcC----CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAAIYG----TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSL 107 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~~Yg----sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL 107 (327)
+++++..++.+.+.+.|..|+=|+..|+ +.+.+.. +++. -+.+ +.-|..+.-.+.+.+.+-++.--
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~-m~~~-------~~~~--~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKL-MRET-------VGPR--VGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHH-HHHH-------hCCC--ceEEeeCCcCCHHHHHHHHHcCc
Confidence 4678889999999999999999999984 4444433 3332 1222 33344333445677777777666
Q ss_pred HHhCCCc
Q 020373 108 SALQMEY 114 (327)
Q Consensus 108 ~rLg~d~ 114 (327)
.|+|+.+
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
Confidence 6666654
No 213
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=23.52 E-value=6.2e+02 Score=23.74 Aligned_cols=48 Identities=10% Similarity=0.044 Sum_probs=30.7
Q ss_pred HHHHHHHHHHH-HcCCCEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 020373 35 NALKLAVLEAI-KLGYRHFDTAAIYG---TEKALGEAIAEALRLGLVTSREQLFITSKL 89 (327)
Q Consensus 35 ~~~~~~l~~A~-e~Gin~fDTA~~Yg---sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~ 89 (327)
.++.+++...+ +.+.+.|= .|. .-.-++..|+..++.+++ +++|+|=.
T Consensus 32 ~~A~~i~~~Ml~d~~~~ifL---~~tg~mvsaGlr~~i~~Li~~g~V----D~iVTTga 83 (329)
T PRK00805 32 GESVRVWTEMLKDPDNTIFM---GLSGAMVPAGMRKIIKWLIRNRYV----DVLVSTGA 83 (329)
T ss_pred HHHHHHHHHHHhCCCCeEEE---EeccchHHHHHHHHHHHHHHcCCe----eEEEeCCC
Confidence 56778888887 66777553 222 345577888888766653 56666654
No 214
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=23.47 E-value=3.1e+02 Score=24.97 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCCh------------HHHHHHHhhCCCCCcccccccCcccch--HHHHHHHHhcCC
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFSC------------KKIDTILTFATIPPSINQVEMHPVWQQ--RKLREFCKVKGM 215 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~~------------~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi 215 (327)
....++...+++++|++-+||=+.... +.++.+++.++---..+|+..--.... .++-+++++.|+
T Consensus 106 m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 106 MRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 345667778999999988888766541 124555555552223456554444432 678888999887
No 215
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=23.14 E-value=1.2e+02 Score=22.89 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=33.6
Q ss_pred cCCChHHHHHHHhhCCCCCcccccccCcc---cchHHHHHHHHhcCCEEEEecc
Q 020373 172 SNFSCKKIDTILTFATIPPSINQVEMHPV---WQQRKLREFCKVKGMNVTAYSP 222 (327)
Q Consensus 172 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~via~~~ 222 (327)
+.++...+.++++...+ +++|+...-. ..-..+.++|+++|+.++.++.
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 45677788888876544 3565554332 1226789999999999999886
No 216
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=23.05 E-value=3.7e+02 Score=24.51 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCCEEeCCCC---------cC--CH-------HHHHHHHHHHHhcCCCCCCCceEEeecCCCC----
Q 020373 35 NALKLAVLEAIKLGYRHFDTAAI---------YG--TE-------KALGEAIAEALRLGLVTSREQLFITSKLWCH---- 92 (327)
Q Consensus 35 ~~~~~~l~~A~e~Gin~fDTA~~---------Yg--sE-------~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~---- 92 (327)
+...++|+.-.+.||++|=-+.. ++ -+ +.+|+..++ .++-++.--+..
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~----------~~iRls~HP~qf~vLn 114 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKE----------NGIRLSMHPDQFTVLN 114 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHH----------TT-EEEE---TT--TT
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHH----------cCCeEEecCCcceeCC
Confidence 44567778888999999965541 22 12 224444443 344555544211
Q ss_pred CCChhhHHHHHHH------HHHHhCCCcc--ceeEeecCCC
Q 020373 93 NAHHDRVIPAIKK------SLSALQMEYL--DLYLIHWPIS 125 (327)
Q Consensus 93 ~~~~~~i~~~~~~------SL~rLg~d~i--Dl~~lH~p~~ 125 (327)
.-.++.+.+++.. .|+.||++.- ..+.||--..
T Consensus 115 Sp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~ 155 (275)
T PF03851_consen 115 SPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGV 155 (275)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCC
Confidence 1234556666554 3788998876 8899996433
No 217
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.97 E-value=6.2e+02 Score=24.76 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=60.2
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhC-CCccceeEeecCCCCCCCCchhh
Q 020373 56 AIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQ-MEYLDLYLIHWPISAKPTSEEEE 134 (327)
Q Consensus 56 ~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg-~d~iDl~~lH~p~~~~~~~~~~~ 134 (327)
-.||.++.|-++|++..+.- +.+-++|.|-+-. ..--+.+..-+++.-++.. ...+.++.++.|+..... .
T Consensus 72 ~VfGg~~~L~~aI~~~~~~~---~P~~I~V~ttC~~-eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~--~-- 143 (455)
T PRK14476 72 TILGGDENVEEAILNICKKA---KPKIIGLCTTGLT-ETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGAL--E-- 143 (455)
T ss_pred eEeCCHHHHHHHHHHHHHhh---CCCEEEEeCcchH-hhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcH--H--
Confidence 46888888888988765432 4566777776522 1112233333333222221 113578888888654320 0
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHHH-HH--------HcCCcCeEEecCC---ChHHHHHHHhhCCCCC
Q 020373 135 VGMSLPNKEDLSPLDYKGVWEAMEE-SQ--------RLGLTKSIGLSNF---SCKKIDTILTFATIPP 190 (327)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~-l~--------~~Gkir~iGvs~~---~~~~l~~~~~~~~~~~ 190 (327)
...+.+++++-+ +. ++++|--||-+++ +.+++.++++..++.+
T Consensus 144 -------------~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 144 -------------DGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred -------------HHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 112334433322 22 2345777764443 3567778888777654
No 218
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=22.87 E-value=5.9e+02 Score=23.28 Aligned_cols=212 Identities=13% Similarity=0.104 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCCEEeCC--C----CcC-C-HHHHH---HHHHHHHhc-CCCCCCCceEEeecCCCCCCChhhHHHHHH
Q 020373 37 LKLAVLEAIKLGYRHFDTA--A----IYG-T-EKALG---EAIAEALRL-GLVTSREQLFITSKLWCHNAHHDRVIPAIK 104 (327)
Q Consensus 37 ~~~~l~~A~e~Gin~fDTA--~----~Yg-s-E~~lG---~aL~~~~~~-~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~ 104 (327)
+...+..+++.|++++|.- + .+| + ++.+. +++++..++ | -|-.+.++ +. ...+++.+++.++
T Consensus 74 ~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~g---i~~~li~~--~~-r~~~~~~~~~~~~ 147 (324)
T TIGR01430 74 AYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFG---IKSRLILC--GM-RHKQPEAAEETLE 147 (324)
T ss_pred HHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcC---CeEEEEEE--Ee-CCCCHHHHHHHHH
Confidence 4566677889999999842 1 223 2 33332 333332111 2 12222222 21 2234667777777
Q ss_pred HHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCC-ChHHHHHHH
Q 020373 105 KSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNF-SCKKIDTIL 183 (327)
Q Consensus 105 ~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~ 183 (327)
..++ .+-+.+--+-++..... ...+...+.++.+++.|.--.+=++.. ....+..++
T Consensus 148 ~~~~-~~~~~vvg~~l~~~e~~---------------------~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~ 205 (324)
T TIGR01430 148 LAKP-YKEQTIVGFGLAGDERG---------------------GPPPDFVRAFAIARELGLHLTVHAGELGGPESVREAL 205 (324)
T ss_pred HHHh-hccCcEEEecCCCCCCC---------------------CCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHH
Confidence 6665 22222222223321111 113556677788888886554444432 233445554
Q ss_pred hhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 020373 184 TFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQ 263 (327)
Q Consensus 184 ~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~ 263 (327)
...+.. .+-.-++ +....+.++.++++||.+.. .|... -.+ +... ..+..| ++-.++.
T Consensus 206 ~~~g~~--ri~Hg~~-l~~~~~~i~~l~~~gi~v~~-cP~Sn-~~l-~~~~------------~~~~~p----i~~l~~~ 263 (324)
T TIGR01430 206 DDLGAT--RIGHGVR-ALEDPELLKRLAQENITLEV-CPTSN-VAL-GVVK------------SLAEHP----LRRFLEA 263 (324)
T ss_pred HHcCch--hcchhhh-hccCHHHHHHHHHcCceEEE-CCccc-ccc-cccC------------CcccCh----HHHHHHC
Confidence 433322 1111111 11235688999999998754 34432 100 0000 001112 4455677
Q ss_pred CcEEEeCCCCH-----HHHHHhhcccc-cccCHHHHHHHHh
Q 020373 264 GVTVVVRSLNP-----ERLKQNLGIFD-WELTDDDYDKINQ 298 (327)
Q Consensus 264 ~~~~i~g~~~~-----~~l~enl~a~~-~~Lt~~~~~~i~~ 298 (327)
|+.+.+|+.++ .-.+|-..+.. ..|+.+|+..+..
T Consensus 264 Gv~v~igTD~~~~~~~~l~~e~~~a~~~~~l~~~el~~~~~ 304 (324)
T TIGR01430 264 GVKVTLNSDDPAYFGSYLTEEYEIAAKHAGLTEEELKQLAR 304 (324)
T ss_pred CCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77777777543 23333333333 4788877665433
No 219
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.86 E-value=3.6e+02 Score=25.46 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccc---hHHHHHHHHhcCCEEEEeccCC
Q 020373 151 KGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQ---QRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 151 ~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~via~~~l~ 224 (327)
..+...+..+.+.-.++..-+...+.+.++++++ .+.+.+++..+.|+... -+++.+.|+++|+.++.=..++
T Consensus 96 ~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~-~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 96 GGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALG-PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred hHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcC-cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence 3444444444333233333333346777777765 23444555666666543 2778999999999998766553
No 220
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=22.84 E-value=5e+02 Score=22.43 Aligned_cols=166 Identities=10% Similarity=0.092 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCC-CCcC--CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTA-AIYG--TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLS 108 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA-~~Yg--sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~ 108 (327)
.+.++..++++...+.||.+|++. +..+ ..+.+-+..+.. +...+...+. .....++..++.. .
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~-----~~~~~i~~~~~~~-~ 77 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL-------PNARLQALCR-----ANEEDIERAVEAA-K 77 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH-------HSSEEEEEEE-----SCHHHHHHHHHHH-H
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh-------cccccceeee-----ehHHHHHHHHHhh-H
Confidence 456788888898889999999999 3333 123343333322 2323322222 2345566666533 4
Q ss_pred HhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCC---CCCHHHHHHHHHHHHHcCCcCeEEecCCC---hHHHHHH
Q 020373 109 ALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLS---PLDYKGVWEAMEESQRLGLTKSIGLSNFS---CKKIDTI 182 (327)
Q Consensus 109 rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~Gkir~iGvs~~~---~~~l~~~ 182 (327)
..|.+.+.++.-=++. ... ..+. ....+.+.+..+.+++.|....+++...+ ++.+.++
T Consensus 78 ~~g~~~i~i~~~~s~~-------~~~--------~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~ 142 (237)
T PF00682_consen 78 EAGIDIIRIFISVSDL-------HIR--------KNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLEL 142 (237)
T ss_dssp HTTSSEEEEEEETSHH-------HHH--------HHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHH
T ss_pred hccCCEEEecCcccHH-------HHH--------HhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHH
Confidence 6788777754321110 000 0000 00134556777888889988888875444 4444433
Q ss_pred HhhCC-CCCcccccc--cCcccch--HHHHHHHHhc----CCEEEEeccCCC
Q 020373 183 LTFAT-IPPSINQVE--MHPVWQQ--RKLREFCKVK----GMNVTAYSPLGA 225 (327)
Q Consensus 183 ~~~~~-~~~~~~q~~--~~~~~~~--~~l~~~~~~~----gi~via~~~l~~ 225 (327)
.+... ..+..+.+. +....|. .+++...+++ .+++.++.-++.
T Consensus 143 ~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 143 AEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp HHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred HHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 33221 112222221 1112222 4555555542 356677666643
No 221
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=22.82 E-value=2.2e+02 Score=21.81 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=31.0
Q ss_pred ecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCC
Q 020373 171 LSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 171 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~ 224 (327)
++..+.++++.++... ..+.++-.--+......++.+.++++||++..+..-+
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~~ 89 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQA 89 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHHH
Confidence 3445566666666532 2222222222323335788899999999998876543
No 222
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.71 E-value=6.4e+02 Score=23.60 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=48.9
Q ss_pred CCceEEeecCCCCCC-----ChhhHHHHHHHHHHHhCCCcccee-Eeec-CCCCCCCCchhhhccCCCCCCCCCCCCHHH
Q 020373 80 REQLFITSKLWCHNA-----HHDRVIPAIKKSLSALQMEYLDLY-LIHW-PISAKPTSEEEEVGMSLPNKEDLSPLDYKG 152 (327)
Q Consensus 80 R~~~~I~tK~~~~~~-----~~~~i~~~~~~SL~rLg~d~iDl~-~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
.+++.|..|+...+. +.+... .+-+-|+.+|+|+|++- ..|. +....+ .. .....
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~---------------~~--~~~~~ 263 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIA---------------TS--VPRGA 263 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCcccc---------------cc--CCchh
Confidence 457778888765432 222222 34455778888888762 2232 111000 00 00011
Q ss_pred HHHHHHHHHHcCCcCeEEecCC-ChHHHHHHHhhCCCC
Q 020373 153 VWEAMEESQRLGLTKSIGLSNF-SCKKIDTILTFATIP 189 (327)
Q Consensus 153 ~~~~l~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~ 189 (327)
......++++.=.+-=++...+ +++.++++++....+
T Consensus 264 ~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 264 FAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDAD 301 (353)
T ss_pred hHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCC
Confidence 2334566666656666666554 588888888876655
No 223
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=22.66 E-value=2.3e+02 Score=27.59 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcC-CcCeEEecCCChHHHHHHHhhCCCC-----CcccccccCcccchHHHHHHHHhcCCEEEEecc
Q 020373 152 GVWEAMEESQRLG-LTKSIGLSNFSCKKIDTILTFATIP-----PSINQVEMHPVWQQRKLREFCKVKGMNVTAYSP 222 (327)
Q Consensus 152 ~~~~~l~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~~-----~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~ 222 (327)
-+...++.++++| .++++.+.+-....++++.+.-..+ +..+........+=+++...|++.||.+++-.+
T Consensus 143 ~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaA 219 (428)
T KOG1549|consen 143 CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAA 219 (428)
T ss_pred chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehh
Confidence 4566678888888 4778888755544444444433211 122222333334448899999999997766543
No 224
>PRK06256 biotin synthase; Validated
Probab=22.64 E-value=6.1e+02 Score=23.36 Aligned_cols=123 Identities=11% Similarity=-0.020 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcCeEE-ecCCC--hH---HHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEe
Q 020373 147 PLDYKGVWEAMEESQRLGLTKSIG-LSNFS--CK---KIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAY 220 (327)
Q Consensus 147 ~~~~~~~~~~l~~l~~~Gkir~iG-vs~~~--~~---~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~ 220 (327)
....+++.+..+++++.|..+..= .+.+. .. .+.++++...-.+. +.+..+.-....+.++..++.|+..+..
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~-i~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETD-LEICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCC-CcEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 356899999999999998654321 12332 22 33344432221111 1112222223467888899999876643
Q ss_pred ccCCCCCCCCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcC----cEEEeCC-CCHHHHHHhhc
Q 020373 221 SPLGAVGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQG----VTVVVRS-LNPERLKQNLG 282 (327)
Q Consensus 221 ~~l~~~G~l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~----~~~i~g~-~~~~~l~enl~ 282 (327)
+. +. ..+.+..++..+...-.--+++.+...| ...|+|. .+.+++.+.+.
T Consensus 169 ~l-----------Et-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~ 223 (336)
T PRK06256 169 NL-----------ET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAF 223 (336)
T ss_pred CC-----------cc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHH
Confidence 21 11 2344444543321111223556666655 4456665 35555555444
No 225
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=22.43 E-value=48 Score=29.38 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=29.5
Q ss_pred CcCCccccccCccC--------------CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHH
Q 020373 18 RNMPVIGLGCGVGK--------------SNLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEA 71 (327)
Q Consensus 18 ~~vs~lglG~~~~~--------------~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~ 71 (327)
..|.++++.+...+ .+-+-.......|.+.|+++||.. +|.+|...=+.|++.
T Consensus 168 ~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 168 KKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEW 234 (241)
T ss_dssp SEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred CcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHH
Confidence 77888777654432 111222334566778888888865 676666655555544
No 226
>PRK09061 D-glutamate deacylase; Validated
Probab=22.38 E-value=7.7e+02 Score=24.46 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCCEEeCCCCc--C-CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCC-ChhhHHHHHHHHHHHhCC
Q 020373 37 LKLAVLEAIKLGYRHFDTAAIY--G-TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNA-HHDRVIPAIKKSLSALQM 112 (327)
Q Consensus 37 ~~~~l~~A~e~Gin~fDTA~~Y--g-sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~-~~~~i~~~~~~SL~rLg~ 112 (327)
..++++.|++.|+..|=+...| + +...+-+.++.. .+-+..|...+..... ++.....++++.++....
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHH
Confidence 5677888999999999876566 2 444455555544 3345566665532221 122334455555543332
Q ss_pred CccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 020373 113 EYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL 165 (327)
Q Consensus 113 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 165 (327)
.-.-+...|--.... ....+.++.+++++++|.
T Consensus 244 ~G~rv~IsHlss~g~--------------------~~~~~~le~I~~Ar~~Gi 276 (509)
T PRK09061 244 TGAHMHICHVNSTSL--------------------RDIDRCLALVEKAQAQGL 276 (509)
T ss_pred hCCCEEEEeeccCCc--------------------ccHHHHHHHHHHHHHcCC
Confidence 223466677532111 124778888999999984
No 227
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=22.21 E-value=68 Score=25.80 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCCEEe
Q 020373 39 LAVLEAIKLGYRHFD 53 (327)
Q Consensus 39 ~~l~~A~e~Gin~fD 53 (327)
..+...++.|||+||
T Consensus 30 ~~i~~QL~~GiR~lD 44 (146)
T PF00388_consen 30 WSIREQLESGIRYLD 44 (146)
T ss_dssp HHHHHHHHTT--EEE
T ss_pred HhHHHHHhccCceEE
Confidence 468899999999998
No 228
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=22.11 E-value=3.8e+02 Score=25.02 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCcC-eEEecCCChHHHHHHHhhCCCCCcccccccCcccchHHHHHHHHhcCCEEEEeccCC
Q 020373 154 WEAMEESQRLGLTK-SIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 154 ~~~l~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~ 224 (327)
++.+.+++++-.+. +.|=|-++.....++++.... +++|+....+.--.++++.|+++||.++.++.+.
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~--dvi~ik~~~~GGit~~lkiA~~~gi~v~v~s~~e 242 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAA--DVAVLKVAPLGGVRAALDIAEQIGLPVVVSSALD 242 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCC--CEEEeCcchhCCHHHHHHHHHHcCCcEEEeCCcc
Confidence 45555665553333 445555566666666654433 3555555544333556677888888887776664
No 229
>TIGR00035 asp_race aspartate racemase.
Probab=22.00 E-value=4.9e+02 Score=22.57 Aligned_cols=82 Identities=12% Similarity=-0.016 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCCh
Q 020373 97 DRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSC 176 (327)
Q Consensus 97 ~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~ 176 (327)
+..++-++.+=.+.+-++++.+.+++|+..+... .+ ..... +.....+.+.++.|.+.| +..|-++..+.
T Consensus 17 ~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~---~~-----~~~~~-~~~~~~l~~~~~~L~~~g-~d~iviaCNTa 86 (229)
T TIGR00035 17 ELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTA---YI-----LGRGE-DRPRPILIDIAVKLENAG-ADFIIMPCNTA 86 (229)
T ss_pred HHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHH---HH-----hcCCc-chHHHHHHHHHHHHHHcC-CCEEEECCccH
Confidence 4455555555567888999999999985321100 00 00000 112344566777776655 79999998886
Q ss_pred HH-HHHHHhhCCC
Q 020373 177 KK-IDTILTFATI 188 (327)
Q Consensus 177 ~~-l~~~~~~~~~ 188 (327)
.. ++++.+...+
T Consensus 87 h~~~~~l~~~~~i 99 (229)
T TIGR00035 87 HKFAEDIQKAIGI 99 (229)
T ss_pred HHHHHHHHHhCCC
Confidence 65 4555444444
No 230
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=21.92 E-value=1.2e+02 Score=23.95 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=30.9
Q ss_pred hHHHHHHHhhCC-CCCcccccccCcccchHHHHHHHHhcCCEEEEeccCCC
Q 020373 176 CKKIDTILTFAT-IPPSINQVEMHPVWQQRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 176 ~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~~l~~ 225 (327)
++.++.+++.+. +.+.++-.......++..+.+.|++.||++-.++.=+.
T Consensus 57 ~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~AA 107 (127)
T COG3737 57 PEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTGAA 107 (127)
T ss_pred HHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccchhh
Confidence 556666666554 22233333333334457899999999999987776543
No 231
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=21.85 E-value=3.8e+02 Score=25.86 Aligned_cols=26 Identities=35% Similarity=0.280 Sum_probs=18.4
Q ss_pred HcCCCEEeCCCCcC------CHHHHHHHHHHH
Q 020373 46 KLGYRHFDTAAIYG------TEKALGEAIAEA 71 (327)
Q Consensus 46 e~Gin~fDTA~~Yg------sE~~lG~aL~~~ 71 (327)
+.|-+|+|....|+ +...+=++|++.
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q 70 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQ 70 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHH
Confidence 35778888888886 456666777764
No 232
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.74 E-value=4.7e+02 Score=27.25 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHc--CCcCeEEecC
Q 020373 96 HDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRL--GLTKSIGLSN 173 (327)
Q Consensus 96 ~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Gkir~iGvs~ 173 (327)
-+.+++-++.....-.....-+++|+..+.. ....+.+|.+..++ +.+..|.+++
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~L-----------------------s~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----------------------TNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------------------CHHHHHHHHHhhccCCCCceEEEEeC
Confidence 4556665555443323334567888765322 14567777777777 8999999999
Q ss_pred CChHHHHHHHhhC
Q 020373 174 FSCKKIDTILTFA 186 (327)
Q Consensus 174 ~~~~~l~~~~~~~ 186 (327)
.....+..+++.|
T Consensus 163 ep~kLlpTIrSRC 175 (700)
T PRK12323 163 DPQKIPVTVLSRC 175 (700)
T ss_pred ChHhhhhHHHHHH
Confidence 7766666776665
No 233
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.66 E-value=6.3e+02 Score=24.40 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCccccccCccC----------CChHHHHHHHHHHHHcCCCEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 020373 20 MPVIGLGCGVGK----------SNLNALKLAVLEAIKLGYRHFDTAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKL 89 (327)
Q Consensus 20 vs~lglG~~~~~----------~~~~~~~~~l~~A~e~Gin~fDTA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~ 89 (327)
+..|.+|.-.+. .+.+++.+.++.+-+.|+..+...=+| |+
T Consensus 152 ~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~----------------Gl------------- 202 (430)
T PRK08208 152 VNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIY----------------GI------------- 202 (430)
T ss_pred CCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeec----------------CC-------------
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeE
Q 020373 90 WCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSI 169 (327)
Q Consensus 90 ~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~i 169 (327)
+..+.+.+.+.++..+ +|+.+++.++.+.-.....-.....+. .....+.++...+.-.+.--+++
T Consensus 203 --P~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~-----------~~~~~~m~~~~~~~L~~~Gy~~y 268 (430)
T PRK08208 203 --PGQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAW-----------DDQRLSLYRLARDLLLEAGYTQT 268 (430)
T ss_pred --CCCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCC-----------HHHHHHHHHHHHHHHHHcCCeEE
Q ss_pred EecCCC
Q 020373 170 GLSNFS 175 (327)
Q Consensus 170 Gvs~~~ 175 (327)
++++|.
T Consensus 269 ei~~fa 274 (430)
T PRK08208 269 SMRMFR 274 (430)
T ss_pred eeccee
No 234
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=21.53 E-value=6.4e+02 Score=23.16 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=72.5
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCC---------Cc-CC-----HHHHHHHHHHHHhcCCCCCCCceEEeecCCCC-CCC
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAA---------IY-GT-----EKALGEAIAEALRLGLVTSREQLFITSKLWCH-NAH 95 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~---------~Y-gs-----E~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~-~~~ 95 (327)
.+.++..+..+.+.+.|+..||.-- .| |+ .+.+.+.++...+ +-.+-|+.|+... +..
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~------~~~~pv~vKir~g~~~~ 145 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVD------AVDIPVTVKIRIGWDDA 145 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHh------hcCCCEEEEEEcccCCC
Confidence 4677888888888899999998521 23 32 3455555654311 1124577776211 111
Q ss_pred hhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCC
Q 020373 96 HDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFS 175 (327)
Q Consensus 96 ~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~ 175 (327)
...+ ..+-+.|+..|+ |.+.+|....... + .-...|+.+.++++.=.+--||.....
T Consensus 146 ~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~----------------~---~~~~~~~~i~~i~~~~~ipvi~nGgI~ 202 (319)
T TIGR00737 146 HINA-VEAARIAEDAGA---QAVTLHGRTRAQG----------------Y---SGEANWDIIARVKQAVRIPVIGNGDIF 202 (319)
T ss_pred cchH-HHHHHHHHHhCC---CEEEEEccccccc----------------C---CCchhHHHHHHHHHcCCCcEEEeCCCC
Confidence 1112 234455667785 5556785321100 0 001246777777777667777776654
Q ss_pred -hHHHHHHHhhCCCC
Q 020373 176 -CKKIDTILTFATIP 189 (327)
Q Consensus 176 -~~~l~~~~~~~~~~ 189 (327)
+++++++++..+.+
T Consensus 203 ~~~da~~~l~~~gad 217 (319)
T TIGR00737 203 SPEDAKAMLETTGCD 217 (319)
T ss_pred CHHHHHHHHHhhCCC
Confidence 77788888665544
No 235
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=21.53 E-value=7.6e+02 Score=24.04 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=42.5
Q ss_pred CCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCC-CHHH---HH-HHHHHHHHcC
Q 020373 90 WCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPL-DYKG---VW-EAMEESQRLG 164 (327)
Q Consensus 90 ~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~l~~l~~~G 164 (327)
+.+..+.+.+++.++..++ |+.++|++|.+.-.. ..+ +.+....+ .+... +.++ .+ .+.+.|.+.|
T Consensus 223 GlPgqT~e~~~~~l~~~~~-l~~~~is~y~L~~~p-gT~------l~~~~~~g-~l~~~~~~~~~~~my~~~~~~L~~~G 293 (449)
T PRK09058 223 GLPGQTPEIWQQDLAIVRD-LGLDGVDLYALNLLP-GTP------LAKAVEKG-KLPPPATPAERADMYAYGVEFLAKAG 293 (449)
T ss_pred eCCCCCHHHHHHHHHHHHh-cCCCEEEEeccccCC-CCH------HHHHHHcC-CCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4455667777777776664 999999999877421 111 00000000 01001 1122 22 3456777888
Q ss_pred CcCeEEecCCCh
Q 020373 165 LTKSIGLSNFSC 176 (327)
Q Consensus 165 kir~iGvs~~~~ 176 (327)
. +++++|+|..
T Consensus 294 y-~~yeis~far 304 (449)
T PRK09058 294 W-RQLSNSHWAR 304 (449)
T ss_pred C-eEEeeeeeec
Confidence 7 5599999864
No 236
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=21.48 E-value=2.6e+02 Score=26.63 Aligned_cols=70 Identities=9% Similarity=0.034 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcC-CcCeEEecCCChHHHHHHHhhCCCCCcccccccCcccc---hHHHHHHHHhcCCEEEEeccCC
Q 020373 152 GVWEAMEESQRLG-LTKSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVWQ---QRKLREFCKVKGMNVTAYSPLG 224 (327)
Q Consensus 152 ~~~~~l~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~via~~~l~ 224 (327)
.....++.+...| ++..+. .+.+.+++++...+.+.+++..+.|+... -+++.+.|+++|+.++.=..++
T Consensus 104 ~~~~~~~~~~~~g~~v~~~~---~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a 177 (385)
T PRK08574 104 TTLRLLKSLEKFGVKVVLAY---PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFA 177 (385)
T ss_pred hHHHHHHHhhccCcEEEEEC---CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCC
Confidence 3444444444444 233332 34677777765424445555666666432 2678999999999998776654
No 237
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=21.35 E-value=6.1e+02 Score=22.88 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=19.6
Q ss_pred CChHHHHHHHHHHHHcCCCEE--eCC
Q 020373 32 SNLNALKLAVLEAIKLGYRHF--DTA 55 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~f--DTA 55 (327)
.+.......+++|.++||-.+ |+.
T Consensus 100 ~d~~~~~~~v~~a~~aGIpVv~~d~~ 125 (322)
T COG1879 100 VDPDALTPAVKKAKAAGIPVVTVDSD 125 (322)
T ss_pred CChhhhHHHHHHHHHCCCcEEEEecC
Confidence 567788999999999999955 554
No 238
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.32 E-value=4e+02 Score=21.87 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHcCCCEEeCCCCcC---C--HHHHHHHHHHHHhcCCCCCCCceEEeecCCCCC-CChhhHHHHHHHHH
Q 020373 34 LNALKLAVLEAIKLGYRHFDTAAIYG---T--EKALGEAIAEALRLGLVTSREQLFITSKLWCHN-AHHDRVIPAIKKSL 107 (327)
Q Consensus 34 ~~~~~~~l~~A~e~Gin~fDTA~~Yg---s--E~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~-~~~~~i~~~~~~SL 107 (327)
-++..+..+.|.+.|...+...+.|+ + ++.+-+.+++..+. -+.++-+.-+..+.. .+++.+.+..+. +
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~pv~iy~~p~~~~~~~~~~~~~~~-~ 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA----ADGGLPLKVILETRGLKTADEIAKAARI-A 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH----hcCCceEEEEEECCCCCCHHHHHHHHHH-H
Confidence 57788889999999999999765553 3 55555655554322 111333333332222 245545544333 3
Q ss_pred HHhCCCccc
Q 020373 108 SALQMEYLD 116 (327)
Q Consensus 108 ~rLg~d~iD 116 (327)
+..|++.|.
T Consensus 139 ~~~g~~~iK 147 (201)
T cd00945 139 AEAGADFIK 147 (201)
T ss_pred HHhCCCEEE
Confidence 567766554
No 239
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.29 E-value=4.7e+02 Score=24.36 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCc-CeEEecCCChHHHHHHHhhCCCCCcccccccCccc---chHHHHHHHHhcCCEEEEeccC
Q 020373 154 WEAMEESQRLGLT-KSIGLSNFSCKKIDTILTFATIPPSINQVEMHPVW---QQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 154 ~~~l~~l~~~Gki-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~via~~~l 223 (327)
++.+.++++.-.+ -+.|-|.++...+..+++...++ ++|+.....- .-.++..+|+.+|+.++..+..
T Consensus 217 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 217 LIDHAELQKLLKTPICLDESIQSAEDARKAIELGACK--IINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCC--EEEecccccCCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 5667777765432 26677788888888888765443 5666554332 2367889999999998865443
No 240
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.27 E-value=3.2e+02 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=16.7
Q ss_pred HHHHHhcCcEEEeCCCCHHHHHHhh
Q 020373 257 LRWIVEQGVTVVVRSLNPERLKQNL 281 (327)
Q Consensus 257 l~~~l~~~~~~i~g~~~~~~l~enl 281 (327)
+++....+..+++|+.+++++.+..
T Consensus 97 ~~~~~~~~~~~~~G~~t~~E~~~A~ 121 (206)
T PRK09140 97 IRRAVALGMVVMPGVATPTEAFAAL 121 (206)
T ss_pred HHHHHHCCCcEEcccCCHHHHHHHH
Confidence 3445555677778888887777664
No 241
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=21.15 E-value=5.7e+02 Score=22.44 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=36.1
Q ss_pred cCCcCeEEecCCChHHHHHHHhhCCCCCccc--------------ccc---cCc--ccchHHHHHHHHhcCCEEEEeccC
Q 020373 163 LGLTKSIGLSNFSCKKIDTILTFATIPPSIN--------------QVE---MHP--VWQQRKLREFCKVKGMNVTAYSPL 223 (327)
Q Consensus 163 ~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~~--------------q~~---~~~--~~~~~~l~~~~~~~gi~via~~~l 223 (327)
.+..+.+=+++|++..+..+.+...--+... +.. +++ ..-...+++.|+++|+.|.+|..-
T Consensus 139 ~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTvn 218 (249)
T PRK09454 139 AGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTVN 218 (249)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeCC
Confidence 3544568899999998888877543111000 010 111 111367888888888888888643
No 242
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=21.12 E-value=5.6e+02 Score=22.35 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=40.1
Q ss_pred CCEEeC-CCCcC--CHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCC-------ChhhHHHHHHHHHHHhCCCcccee
Q 020373 49 YRHFDT-AAIYG--TEKALGEAIAEALRLGLVTSREQLFITSKLWCHNA-------HHDRVIPAIKKSLSALQMEYLDLY 118 (327)
Q Consensus 49 in~fDT-A~~Yg--sE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~-------~~~~i~~~~~~SL~rLg~d~iDl~ 118 (327)
.+.+.. +..|+ +.+.+.++.+. -++++..+-|++..-. ..+.+.+.+-+.++-|| +++..+
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~--------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~i 89 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ--------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPI 89 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT--------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh--------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEE
Confidence 344433 34677 78888887753 5688999999853211 23445466677999999 999999
Q ss_pred EeecCCC
Q 020373 119 LIHWPIS 125 (327)
Q Consensus 119 ~lH~p~~ 125 (327)
++.-|..
T Consensus 90 L~Q~Pps 96 (230)
T PF01904_consen 90 LFQFPPS 96 (230)
T ss_dssp EEE--TT
T ss_pred EEEcCCC
Confidence 9998743
No 243
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=21.10 E-value=4.2e+02 Score=28.12 Aligned_cols=36 Identities=19% Similarity=0.015 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHc--CCcCeEEecCCChHHHHHHHhhC
Q 020373 151 KGVWEAMEESQRL--GLTKSIGLSNFSCKKIDTILTFA 186 (327)
Q Consensus 151 ~~~~~~l~~l~~~--Gkir~iGvs~~~~~~l~~~~~~~ 186 (327)
...+.+|.+..++ ..++.|-++|.....+..+++.|
T Consensus 133 ~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 133 NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 4567777777766 58999999997666666666655
No 244
>PRK00208 thiG thiazole synthase; Reviewed
Probab=21.08 E-value=6.1e+02 Score=22.76 Aligned_cols=129 Identities=13% Similarity=0.028 Sum_probs=73.3
Q ss_pred CCccccccCccCCChHHHHHHHHHHHH-cCCCEEeCCCC----cCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCC
Q 020373 20 MPVIGLGCGVGKSNLNALKLAVLEAIK-LGYRHFDTAAI----YGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNA 94 (327)
Q Consensus 20 vs~lglG~~~~~~~~~~~~~~l~~A~e-~Gin~fDTA~~----YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~ 94 (327)
=|+|.+||..+. +.+ ++..|++ +|...+=.|-- ...+..+=+.| ++..+.+.--. ...+
T Consensus 10 ~SRl~~Gtgky~-s~~----~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i----------~~~~~~~lpNT-aG~~ 73 (250)
T PRK00208 10 SSRLLLGTGKYP-SPQ----VMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLL----------PPLGVTLLPNT-AGCR 73 (250)
T ss_pred eccceEecCCCC-CHH----HHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhc----------cccCCEECCCC-CCCC
Confidence 478999998863 333 3444443 46655532211 11121221222 33444332222 1245
Q ss_pred ChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCC
Q 020373 95 HHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNF 174 (327)
Q Consensus 95 ~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~ 174 (327)
+.+...+-.+-..+-++++.|=|=.+..+... ..+..+++++.++|.++|-+- +=+++-
T Consensus 74 ta~eAv~~a~lare~~~~~~iKlEVi~d~~~l--------------------lpd~~~tv~aa~~L~~~Gf~v-lpyc~~ 132 (250)
T PRK00208 74 TAEEAVRTARLAREALGTNWIKLEVIGDDKTL--------------------LPDPIETLKAAEILVKEGFVV-LPYCTD 132 (250)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEecCCCCC--------------------CcCHHHHHHHHHHHHHCCCEE-EEEeCC
Confidence 56666666666677778887776555544222 234789999999999999865 445666
Q ss_pred ChHHHHHHHhh
Q 020373 175 SCKKIDTILTF 185 (327)
Q Consensus 175 ~~~~l~~~~~~ 185 (327)
++....++.+.
T Consensus 133 d~~~ak~l~~~ 143 (250)
T PRK00208 133 DPVLAKRLEEA 143 (250)
T ss_pred CHHHHHHHHHc
Confidence 66666666554
No 245
>smart00642 Aamy Alpha-amylase domain.
Probab=20.89 E-value=2.6e+02 Score=23.12 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHcCCcCeEEecCCChHHHHHHHhhCCCCC-ccccc--ccCcccchHHHHHHHHhcCCEEEEeccCCC
Q 020373 149 DYKGVWEAMEESQRLGLTKSIGLSNFSCKKIDTILTFATIPP-SINQV--EMHPVWQQRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 149 ~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~-~~~q~--~~~~~~~~~~l~~~~~~~gi~via~~~l~~ 225 (327)
+..++.+.|..+++.| |.+|=++-.....-.. ....+..+ ...++ .|.-...=+.+++.|+++||.|+.=-++..
T Consensus 17 ~~~gi~~~l~yl~~lG-~~~I~l~Pi~~~~~~~-~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 17 DLQGIIEKLDYLKDLG-VTAIWLSPIFESPQGY-PSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEECcceeCCCCC-CCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4688888888888877 5666554432110000 00000000 00011 111101116799999999999998777754
No 246
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.87 E-value=5.5e+02 Score=22.18 Aligned_cols=98 Identities=9% Similarity=0.079 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCcCeEEecCCChHHHH---HHHhhCCCCCccccccc-CcccchHHHHHHHHhcCCEEEEeccCCC
Q 020373 150 YKGVWEAMEESQRLGLTKSIGLSNFSCKKID---TILTFATIPPSINQVEM-HPVWQQRKLREFCKVKGMNVTAYSPLGA 225 (327)
Q Consensus 150 ~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l~---~~~~~~~~~~~~~q~~~-~~~~~~~~l~~~~~~~gi~via~~~l~~ 225 (327)
.+++.+..+.|.+.| |+.+=|+..++..++ ++.+... .+. +-. +++ ..+-++.+.+.|-.++. ||-.
T Consensus 19 ~e~a~~~~~al~~~G-i~~iEit~~t~~a~~~i~~l~~~~~---~~~-vGAGTVl--~~~~a~~a~~aGA~Fiv-sP~~- 89 (204)
T TIGR01182 19 VDDALPLAKALIEGG-LRVLEVTLRTPVALDAIRLLRKEVP---DAL-IGAGTVL--NPEQLRQAVDAGAQFIV-SPGL- 89 (204)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEeCCCccHHHHHHHHHHHCC---CCE-EEEEeCC--CHHHHHHHHHcCCCEEE-CCCC-
Confidence 566777777777655 677888776655543 3333221 110 000 111 24566777888888774 3332
Q ss_pred CCCCCCCCCcCChHHHHHHHHHhCCCHHHHHHHHHHhcCcEEEeCCCCHHHHHHhhcc
Q 020373 226 VGTRWGSNQVMENEALKQIAEAHGKTVAQVSLRWIVEQGVTVVVRSLNPERLKQNLGI 283 (327)
Q Consensus 226 ~G~l~~~~~~~~~~~l~~la~~~g~s~aq~al~~~l~~~~~~i~g~~~~~~l~enl~a 283 (327)
++.+ ++++..+++..+||+.++.++...++.
T Consensus 90 ------------~~~v---------------~~~~~~~~i~~iPG~~TptEi~~A~~~ 120 (204)
T TIGR01182 90 ------------TPEL---------------AKHAQDHGIPIIPGVATPSEIMLALEL 120 (204)
T ss_pred ------------CHHH---------------HHHHHHcCCcEECCCCCHHHHHHHHHC
Confidence 1223 455555566677777777777776654
No 247
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=20.78 E-value=2.4e+02 Score=23.06 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=55.5
Q ss_pred CChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHH--cCCcCeEEe
Q 020373 94 AHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQR--LGLTKSIGL 171 (327)
Q Consensus 94 ~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Gkir~iGv 171 (327)
.+-+.+.+.+++-.+.+|++ ++.+|-.. ..++++.+.+..+ .|.|-+=|-
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~-~~~~QSN~---------------------------EGelId~i~~a~~~~dgiIINpga 77 (146)
T PRK13015 26 ETLADVEALCRAAAEALGLE-VEFRQSNH---------------------------EGELIDWIHEARGDVAGIVINPGA 77 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeCc---------------------------HHHHHHHHHHhhhcCCEEEEcchH
Confidence 34577888888888888864 66666432 3677788877754 355656677
Q ss_pred cCCChHHHHHHHhhCCCCCcccccccCcccch
Q 020373 172 SNFSCKKIDTILTFATIPPSINQVEMHPVWQQ 203 (327)
Q Consensus 172 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~ 203 (327)
-+|+.-.+..++.....| ++.+.++..+.+
T Consensus 78 ~THtSiAl~DAl~~~~~P--~VEVHiSNi~aR 107 (146)
T PRK13015 78 YTHTSVAIRDALAALELP--VIEVHISNVHAR 107 (146)
T ss_pred HhhhHHHHHHHHHcCCCC--EEEEEcCCcccc
Confidence 777778888888876655 677777766543
No 248
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=20.74 E-value=5.3e+02 Score=23.45 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHHcCC-cCeEEecCCChHHHHHHHhhCCCC--------------CcccccccCcccchHHHHHHHHhcCCEEEEec
Q 020373 157 MEESQRLGL-TKSIGLSNFSCKKIDTILTFATIP--------------PSINQVEMHPVWQQRKLREFCKVKGMNVTAYS 221 (327)
Q Consensus 157 l~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~--------------~~~~q~~~~~~~~~~~l~~~~~~~gi~via~~ 221 (327)
+..+.+.+. +..++++.-+++.++.+.+..+++ ++++- -..+-..+.++...|-++|+.|++=.
T Consensus 20 ~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~-Iatp~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 20 LPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVY-IATPNALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred HHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEE-EcCCChhhHHHHHHHHhcCCEEEEcC
Confidence 444555554 788999888888877776655543 01110 01111223678889999999999999
Q ss_pred cCCCCCCCCCCCCcCChHHHHHHHHHhCC----------CHHHHHHHHHHhcC
Q 020373 222 PLGAVGTRWGSNQVMENEALKQIAEAHGK----------TVAQVSLRWIVEQG 264 (327)
Q Consensus 222 ~l~~~G~l~~~~~~~~~~~l~~la~~~g~----------s~aq~al~~~l~~~ 264 (327)
|++. .+.+.+.+.++|++.|+ +|.-..++=.+..+
T Consensus 99 Pla~--------t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g 143 (342)
T COG0673 99 PLAL--------TLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDSG 143 (342)
T ss_pred CCCC--------CHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcC
Confidence 9985 34556778888888764 56777777777765
No 249
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.61 E-value=1.3e+02 Score=25.23 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=26.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecC
Q 020373 141 NKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSN 173 (327)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~ 173 (327)
+++...+++.+++-+++++++++| |++|.||.
T Consensus 124 ~G~~i~~ld~~~v~~~~~~l~~~g-v~avAV~~ 155 (176)
T PF05378_consen 124 DGEVIEPLDEDEVREALRELKDKG-VEAVAVSL 155 (176)
T ss_pred CcEEecCCCHHHHHHHHHHHHhCC-CCEEEEEC
Confidence 444556677888999999999988 99999985
No 250
>PLN02389 biotin synthase
Probab=20.45 E-value=7.5e+02 Score=23.58 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHcCCCEEeCCC----CcCC---HHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLGYRHFDTAA----IYGT---EKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIK 104 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin~fDTA~----~Ygs---E~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~ 104 (327)
.+.++..+.++.+.+.|++.|--.. ..+. -+.+-+.++.. +...+.|....+ ..+. ..=
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i-------k~~~l~i~~s~G--~l~~-----E~l 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI-------RGMGMEVCCTLG--MLEK-----EQA 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH-------hcCCcEEEECCC--CCCH-----HHH
Confidence 4778888888899999999873211 1121 13445555544 222344443332 1222 222
Q ss_pred HHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 020373 105 KSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGL 165 (327)
Q Consensus 105 ~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 165 (327)
+-|+..|+|++ -|..+.. + ...+ .-......++.++.++.+++.|.
T Consensus 182 ~~LkeAGld~~----~~~LeTs-~--~~y~--------~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 AQLKEAGLTAY----NHNLDTS-R--EYYP--------NVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHcCCCEE----EeeecCC-h--HHhC--------CcCCCCCHHHHHHHHHHHHHcCC
Confidence 34455677653 2333211 1 0000 00112357889999999999984
No 251
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=20.44 E-value=1.9e+02 Score=23.45 Aligned_cols=80 Identities=11% Similarity=0.226 Sum_probs=55.8
Q ss_pred CChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHH--cCCcCeEEe
Q 020373 94 AHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQR--LGLTKSIGL 171 (327)
Q Consensus 94 ~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Gkir~iGv 171 (327)
.+-+.+.+.+++--+.+|++ ++.+|-.. ..++++.+.+..+ +|.|-+=|-
T Consensus 24 ~tl~~i~~~l~~~a~~~g~~-v~~~QSN~---------------------------Egelid~I~~a~~~~dgiIINpga 75 (140)
T cd00466 24 TTLADIEALLRELAAELGVE-VEFFQSNH---------------------------EGELIDWIHEARDGADGIIINPGA 75 (140)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeCc---------------------------HHHHHHHHHHhhccCcEEEEcchH
Confidence 34577888888888888874 67766432 3677888877754 455555576
Q ss_pred cCCChHHHHHHHhhCCCCCcccccccCcccch
Q 020373 172 SNFSCKKIDTILTFATIPPSINQVEMHPVWQQ 203 (327)
Q Consensus 172 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~ 203 (327)
-+|+.-.+..++.....| ++.+.++..+.+
T Consensus 76 ~THtSvAi~DAl~~~~~P--~VEVHiSNi~aR 105 (140)
T cd00466 76 YTHTSIALRDALAAVSIP--VIEVHISNIHAR 105 (140)
T ss_pred HHHHHHHHHHHHHcCCCC--EEEEecCCcccc
Confidence 677777788888877655 677777766543
No 252
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=20.28 E-value=8.3e+02 Score=24.01 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=64.3
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCCCCceEEeecCCCCCCChhhHHHHHHHHHHHhCCCccceeEeecCCCCCCCCchh
Q 020373 54 TAAIYGTEKALGEAIAEALRLGLVTSREQLFITSKLWCHNAHHDRVIPAIKKSLSALQMEYLDLYLIHWPISAKPTSEEE 133 (327)
Q Consensus 54 TA~~YgsE~~lG~aL~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~SL~rLg~d~iDl~~lH~p~~~~~~~~~~ 133 (327)
..-.||.++.|-++|.+..+.- +.+-++|.|-+-. ..--+.+..-+++.-++++ +.++.++.|......
T Consensus 97 ~dvVfGg~~kL~~~I~ei~~~~---~P~~I~V~tTC~~-~lIGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~~---- 165 (475)
T PRK14478 97 TDVVFGGEKKLFKAIDEIIEKY---APPAVFVYQTCVV-ALIGDDIDAVCKRAAEKFG---IPVIPVNSPGFVGNK---- 165 (475)
T ss_pred CceeeCCHHHHHHHHHHHHHhc---CCCEEEEeCCChH-HHhccCHHHHHHHHHHhhC---CCEEEEECCCcccch----
Confidence 3345788888888988775532 4566778777632 2222334444444334444 578888877653310
Q ss_pred hhccCCCCCCCCCCCCHHHHHHHHHH-HH--------HcCCcCeEEecCCC--hHHHHHHHhhCCCCC
Q 020373 134 EVGMSLPNKEDLSPLDYKGVWEAMEE-SQ--------RLGLTKSIGLSNFS--CKKIDTILTFATIPP 190 (327)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~-l~--------~~Gkir~iGvs~~~--~~~l~~~~~~~~~~~ 190 (327)
......++++|-+ +. ..+.|--||-.++. .+++.++++..++.+
T Consensus 166 -------------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v 220 (475)
T PRK14478 166 -------------NLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRV 220 (475)
T ss_pred -------------hhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeE
Confidence 0123444444432 33 23557777765554 357888888877553
No 253
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=20.28 E-value=7.3e+02 Score=23.34 Aligned_cols=122 Identities=12% Similarity=0.131 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHcC---CCEEeCCCCcCC-HHHHHHHHHHHHhcCCCCCCCceEEeecCC--CCCCChhhHHHHHHH
Q 020373 32 SNLNALKLAVLEAIKLG---YRHFDTAAIYGT-EKALGEAIAEALRLGLVTSREQLFITSKLW--CHNAHHDRVIPAIKK 105 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~G---in~fDTA~~Ygs-E~~lG~aL~~~~~~~~~~~R~~~~I~tK~~--~~~~~~~~i~~~~~~ 105 (327)
.+.++..+++....+.- +-.+|..+..++ ...+-+.+ + ...-++|.+|+- +.....+.+.+.+.+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~------~---~~piilV~NK~DLl~k~~~~~~~~~~l~~ 118 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV------G---GNPVLLVGNKIDLLPKSVNLSKIKEWMKK 118 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh------C---CCCEEEEEEchhhCCCCCCHHHHHHHHHH
Confidence 34556666555544321 225576555442 11111222 1 455678999982 222234455555666
Q ss_pred HHHHhCCCccceeEeecCCCCCCCCchhhhccCCCCCCCCCCCCHHHHHHHHHHHHHcCCcCeEEecCCChHHH-HHHHh
Q 020373 106 SLSALQMEYLDLYLIHWPISAKPTSEEEEVGMSLPNKEDLSPLDYKGVWEAMEESQRLGLTKSIGLSNFSCKKI-DTILT 184 (327)
Q Consensus 106 SL~rLg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvs~~~~~~l-~~~~~ 184 (327)
-++.+|....+++.+-.-. ....+++++.+.++.+.+.+--+|.+|..-..+ ..++.
T Consensus 119 ~~k~~g~~~~~i~~vSAk~----------------------g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 119 RAKELGLKPVDIILVSAKK----------------------GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred HHHHcCCCcCcEEEecCCC----------------------CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHh
Confidence 6777776544555544221 123678888888887667888999999985544 44443
No 254
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.14 E-value=2e+02 Score=22.34 Aligned_cols=40 Identities=13% Similarity=-0.098 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEeCCCCcC-CHHHHHHHHHHHH
Q 020373 33 NLNALKLAVLEAIKLGYRHFDTAAIYG-TEKALGEAIAEAL 72 (327)
Q Consensus 33 ~~~~~~~~l~~A~e~Gin~fDTA~~Yg-sE~~lG~aL~~~~ 72 (327)
+.+.-.+++...++.|.+.-+.|..|| +...+..|.+.+.
T Consensus 14 s~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~ 54 (121)
T PRK09413 14 TTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQ 54 (121)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 445556788889999999999999999 9999999999873
No 255
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.13 E-value=82 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.065 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHcCCC
Q 020373 32 SNLNALKLAVLEAIKLGYR 50 (327)
Q Consensus 32 ~~~~~~~~~l~~A~e~Gin 50 (327)
.+.+++.+++..|+++||-
T Consensus 183 lt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 183 LTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred cCHHHHHHHHHHHHHhhhc
Confidence 6789999999999999973
No 256
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.05 E-value=2e+02 Score=25.67 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=42.6
Q ss_pred CCCCCCcCCccccccCc---cC----CChHHHHHHHHH----HHHcCCCEEeCCCC--c-C--CHHHHHHH---HHHHHh
Q 020373 13 SSSGHRNMPVIGLGCGV---GK----SNLNALKLAVLE----AIKLGYRHFDTAAI--Y-G--TEKALGEA---IAEALR 73 (327)
Q Consensus 13 ~t~g~~~vs~lglG~~~---~~----~~~~~~~~~l~~----A~e~Gin~fDTA~~--Y-g--sE~~lG~a---L~~~~~ 73 (327)
.| | +.+|.++|.+.+ +| ...+++.+++.. |.+.|||.|--|.. | . +++...++ |+...+
T Consensus 65 et-g-v~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ET-G-VRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVE 142 (287)
T ss_pred Hh-C-CCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 35 8 999999998863 33 123455555554 56789999987742 3 2 44444443 333321
Q ss_pred cCCCCCCCceEEeecC
Q 020373 74 LGLVTSREQLFITSKL 89 (327)
Q Consensus 74 ~~~~~~R~~~~I~tK~ 89 (327)
- + .+-.|.++--+
T Consensus 143 l--A-~~aqV~lAvEi 155 (287)
T COG3623 143 L--A-ARAQVMLAVEI 155 (287)
T ss_pred H--H-HhhccEEEeee
Confidence 1 1 56677776665
Done!