BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020374
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73555|Y875_SYNY3 Uncharacterized membrane protein sll0875 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=sll0875 PE=3 SV=1
Length = 258
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 150/237 (63%), Gaps = 6/237 (2%)
Query: 80 WQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAA 139
W SA++ N + L + L+P G A++LG + W A G G+L+V YF +G+A
Sbjct: 18 WLSAVILNSFLLALAAIAPKKLLTPWGYGHAWVLGVIIWAALGWRGYLVVLAYFFVGSAV 77
Query: 140 TKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLW-QLGFVA 198
T++ +KEA G+AEKR G+RGP +V GS+ +CA FG E +LW LG+VA
Sbjct: 78 TRIGQKEKEAAGIAEKRSGQRGPENVWGSALTAALCALAIAFGP---EPWQLWLALGYVA 134
Query: 199 SFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCL 258
SF TKLSDT +SE+GKAYGK T+L+TT + VPRGTEGAVSVEGT AG A + LA +G
Sbjct: 135 SFSTKLSDTTASEVGKAYGKNTFLITTLQPVPRGTEGAVSVEGTLAGFAAGLALAVLGYG 194
Query: 259 TGQINAPEAVICVIASQIANLGESIIGAALQEKPGFKWLNNDAVNIINISMGSILAV 315
G I+ + +A+ IA ES+IGA LQ K + WL N+ VN IN +G+ +A+
Sbjct: 195 VGLISFGGIIFSTLAAFIATNLESVIGATLQNK--WPWLTNEVVNGINTFLGAAIAI 249
>sp|Q58343|Y933_METJA Uncharacterized membrane protein MJ0933 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0933 PE=3 SV=1
Length = 238
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 19/185 (10%)
Query: 136 GTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLWQL- 194
G ++V + +K+A+ + E + + +V+ + + A L+IFG W L
Sbjct: 66 GVLVSRVGLEKKKAKKMDETCRSLK---NVLANGLIPILFAILAIFGFN-------WALI 115
Query: 195 GFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAW 254
G+++S SDT SSE+G + L+TTF+VV +GT+GA+++ GT AG+ + L+
Sbjct: 116 GYISSIAAATSDTFSSELGILSNEKPRLITTFEVVEKGTDGAITIFGTLAGVLGAFLIGL 175
Query: 255 VGCLT-GQINAPEAVICVIASQIA-NLGESIIGAALQEKPGFKWLNNDAVNIINISMGSI 312
G L G I + V+C A IA NL +S++GA + K LNN+ VN+I +G I
Sbjct: 176 FGYLLFGDI---KIVLCGTAGGIAGNLADSLVGALFERKG---ILNNEHVNLIATIVGGI 229
Query: 313 LAVLM 317
+ VL+
Sbjct: 230 IGVLI 234
>sp|Q96HH6|TMM19_HUMAN Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=2 SV=1
Length = 336
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 132 YFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVGGFE---- 187
+F+ + TK K K+ K G+R V + A A L + G E
Sbjct: 103 FFLSSSKLTKWKGEVKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVD 162
Query: 188 ----FSRLWQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVSV-- 239
+S W L +A+ DT +SE+G K++ L+TT++ VP GT G V+V
Sbjct: 163 FSKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVG 222
Query: 240 ------EGTFAGIFASILLAWVGCLTGQINAPEAVICV---IASQIANLGESIIGAALQ 289
GTF GI A L + I+AP+ I +A + ++ +S +GA +Q
Sbjct: 223 LVSSLLGGTFVGI-AYFLTQLIFVNDLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQ 280
>sp|Q5RF73|TMM19_PONAB Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1
Length = 336
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 22/187 (11%)
Query: 124 SGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGV 183
S F + +F+ + TK K K+ K G+R V + A A L +
Sbjct: 95 SFFTSLLMFFLSSSKLTKWKGEMKKRLDSEYKEGGQRNWIQVFCNGAVPTELALLYMIEN 154
Query: 184 GGFE--------FSRLWQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGT 233
G E +S W L +A+ DT +SE+G K+ L+TT++ VP GT
Sbjct: 155 GPGEIPVDFSKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSPPRLITTWEKVPVGT 214
Query: 234 EGAVSV--------EGTFAGIFASILLAWVGCLTGQINAPEAVICV---IASQIANLGES 282
G V+V GTF GI A L + I+AP+ I +A + ++ +S
Sbjct: 215 NGGVTVVGLVSSLLGGTFVGI-AYFLTQLIFVNDLDISAPQWPIIAFGGLAGLLGSIVDS 273
Query: 283 IIGAALQ 289
+GA +Q
Sbjct: 274 YLGATMQ 280
>sp|Q0P4L9|TMM19_XENTR Transmembrane protein 19 OS=Xenopus tropicalis GN=tmem19 PE=2 SV=1
Length = 336
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 23/239 (9%)
Query: 71 NLVQLSQPTWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVA 130
+L +S W ++L+ ++I G I L SG L+G + A S F +
Sbjct: 45 SLRPISPWRWLVSVLTPIIIVWHG--IKKRSLDNSGALGGLLVGFILTIA-NYSFFSALL 101
Query: 131 TYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVG------ 184
T+F I + TK K K+ K G+R V + A L + G
Sbjct: 102 TFFFISSKLTKWKGEVKKCYDSEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPI 161
Query: 185 --GFEFSRLWQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVSVE 240
E++ W L + + + DT +SEIG K++ L+TT++ VP GT G V+
Sbjct: 162 DFSKEYTASWMCLSLLGALASSAGDTWASEIGPVLSKSSPRLITTWEKVPVGTNGGVTPV 221
Query: 241 GTFAGIFASILLAWVGCLTG-------QINAPEAVICV---IASQIANLGESIIGAALQ 289
G + + + +T +I AP+ I + +A + +L +S +GA +Q
Sbjct: 222 GLISSLLGGTSVGVAYFVTQLIFVPDLEIAAPQWPIVIYGGMAGLLGSLIDSYLGAIMQ 280
>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus GN=LYST PE=1 SV=1
Length = 3796
Score = 35.8 bits (81), Expect = 0.49, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 21 SLQKTPKFEFPIFRNPNISN--STSNC----NSSKMLLLHRANAAPSLQVAVSEAMNLVQ 74
++ + FP+ PN+SN S+ C NS M LL RA + S + SE+
Sbjct: 1386 TMSPSQYLTFPLLHTPNLSNGVSSQKCPGILNSKAMGLLRRARVSQSKKEGDSESFPQQL 1445
Query: 75 LSQPTWQSALLSNVVIFVLGSPILVSGLSPS 105
LS +W ++ V + +LG P L G S S
Sbjct: 1446 LS--SWH---IAPVHLPLLGQPHLSEGFSIS 1471
>sp|Q6IR76|TMM19_XENLA Transmembrane protein 19 OS=Xenopus laevis GN=tmem19 PE=2 SV=1
Length = 336
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 187 EFSRLWQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVSVEGTFA 244
E++ W L + + DT +SEIG K+ L+TT++ VP GT G V+ G +
Sbjct: 166 EYTASWMCLSLLGALSCSAGDTWASEIGPVLSKSAPRLITTWEKVPVGTNGGVTPIGLIS 225
Query: 245 GIFASI---------LLAWVGCLTGQINAPEAVICV---IASQIANLGESIIGAALQ 289
+ I L +V L +I AP+ I + +A + +L +S +GA +Q
Sbjct: 226 SLLGGISVGVAYFVTQLVFVDDL--EIAAPQWPIVIYGGMAGLLGSLIDSYLGAIMQ 280
>sp|Q91W52|TMM19_MOUSE Transmembrane protein 19 OS=Mus musculus GN=Tmem19 PE=2 SV=1
Length = 336
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 124 SGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGV 183
S F + T+F+ + TK + K+ K G+R V + A A L +
Sbjct: 95 SFFTSLMTFFLSSSKLTKWRGNIKKQLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIEN 154
Query: 184 GGFEFSRLWQLGFVASFC---------TKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGT 233
G E + AS+ + DT +SE+ K++ L+TT++ VP GT
Sbjct: 155 GPGEMPIDFSKQHTASWMCLSLLAALASSAGDTWASEVAPVLSKSSPRLITTWEKVPVGT 214
Query: 234 EGAVS--------VEGTFAGIFASILLAWVGCLTGQINAPEAVICV---IASQIANLGES 282
G V+ + GTF G+ A L V I+AP+ I +A +L +S
Sbjct: 215 NGGVTAVGLASSLLGGTFVGL-AYFLTQLVFVNDLDISAPQWPIIAFGGVAGLFGSLVDS 273
Query: 283 IIGAALQ 289
+GA +Q
Sbjct: 274 FLGATMQ 280
>sp|B9LZK1|SYP_GEOSF Proline--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=proS PE=3
SV=1
Length = 570
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Query: 184 GGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTF 243
G E R ++G V TK S + + A GK + + G A +E
Sbjct: 397 GTLEMWRGIEVGHVFKLGTKYSKAMKATYLDADGKEQIIFMGCYGIGIGRTVAACIEQNH 456
Query: 244 A--GIFASILLAWVGCLTGQINAPEAVIC----VIASQIANLGESIIGAALQEKPGFKWL 297
GI + +A C+ +N E V+ I Q+A G ++ E+PGFK+
Sbjct: 457 DENGIIFPLPIAPFHCIISALNMKEDVVREASEAIYGQLAAAGIEVLLDDRDERPGFKFK 516
Query: 298 NNDAVNI-INISMGS 311
+ D + I + I +GS
Sbjct: 517 DADLIGIPMRIVVGS 531
>sp|Q6P726|TMM19_RAT Transmembrane protein 19 OS=Rattus norvegicus GN=Tmem19 PE=2 SV=2
Length = 351
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 206 DTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVS--------VEGTFAGIFASILLAWVG 256
DT +SE+ K++ L+TT++ VP GT G V+ + GTF G+ A L V
Sbjct: 201 DTWASEVAPVLSKSSPRLITTWEKVPVGTNGGVTAVGLVSSLLGGTFVGL-AYFLTQLVF 259
Query: 257 CLTGQINAPEAVICV---IASQIANLGESIIGAALQ 289
I+AP+ + +A + ++ +S +GA +Q
Sbjct: 260 VNDLDISAPQWPLIAFGGLAGLLGSIVDSFLGATMQ 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,578,896
Number of Sequences: 539616
Number of extensions: 4188020
Number of successful extensions: 10903
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 10895
Number of HSP's gapped (non-prelim): 23
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)