Query 020374
Match_columns 327
No_of_seqs 177 out of 433
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00297 conserved hypothetic 100.0 5.2E-71 1.1E-75 512.9 24.0 232 79-318 3-234 (237)
2 PF01940 DUF92: Integral membr 100.0 2.3E-70 5E-75 505.7 22.6 221 90-314 6-226 (226)
3 COG1836 Predicted membrane pro 100.0 1.1E-63 2.5E-68 462.1 22.8 235 79-321 12-246 (247)
4 KOG4491 Predicted membrane pro 100.0 2.1E-56 4.5E-61 414.9 15.9 236 79-318 41-319 (323)
5 PF01148 CTP_transf_1: Cytidyl 96.5 0.012 2.6E-07 53.4 8.0 87 196-291 133-226 (259)
6 COG0170 SEC59 Dolichol kinase 95.4 0.88 1.9E-05 42.3 15.4 97 194-310 115-211 (216)
7 COG0575 CdsA CDP-diglyceride s 94.0 0.23 5.1E-06 47.1 8.1 89 195-291 136-231 (265)
8 PRK11624 cdsA CDP-diglyceride 83.5 4 8.7E-05 39.5 7.2 84 200-291 159-248 (285)
9 PLN02953 phosphatidate cytidyl 81.1 4.6 9.9E-05 41.4 6.9 84 199-291 275-364 (403)
10 PRK04032 hypothetical protein; 75.5 6.3 0.00014 35.7 5.3 61 233-293 33-100 (159)
11 COG4589 Predicted CDP-diglycer 57.7 30 0.00065 34.1 6.3 80 201-288 182-265 (303)
12 KOG2468 Dolichol kinase [Lipid 55.3 26 0.00056 36.9 5.8 53 193-256 410-462 (510)
13 PRK10484 putative transporter; 44.6 1E+02 0.0022 31.9 8.3 23 95-117 423-445 (523)
14 KOG4453 Predicted ER membrane 44.6 1.5E+02 0.0032 29.0 8.6 86 206-309 169-264 (269)
15 PRK14212 camphor resistance pr 44.3 98 0.0021 26.6 6.9 72 242-319 38-118 (128)
16 COG0239 CrcB Integral membrane 40.0 1.3E+02 0.0028 26.2 6.9 76 242-319 39-123 (126)
17 PLN02594 phosphatidate cytidyl 39.6 71 0.0015 32.3 6.0 49 199-256 131-179 (342)
18 PRK12488 acetate permease; Pro 38.3 1.3E+02 0.0029 31.4 8.1 23 95-117 449-471 (549)
19 PRK14204 camphor resistance pr 37.5 2.7E+02 0.0058 24.0 8.5 80 240-325 38-126 (127)
20 PRK09395 actP acetate permease 36.6 1.1E+02 0.0023 32.1 7.0 23 95-117 451-473 (551)
21 COG3167 PilO Tfp pilus assembl 36.3 20 0.00043 33.8 1.5 32 207-242 152-187 (211)
22 PF01102 Glycophorin_A: Glycop 35.3 34 0.00074 29.7 2.7 25 106-134 64-88 (122)
23 PF10031 DUF2273: Small integr 34.7 81 0.0017 23.4 4.2 39 104-143 11-49 (51)
24 COG3030 FxsA Protein affecting 34.5 1.4E+02 0.003 27.2 6.5 52 126-178 33-84 (158)
25 PF10031 DUF2273: Small integr 34.4 71 0.0015 23.6 3.9 40 242-281 10-50 (51)
26 PRK14219 camphor resistance pr 33.7 2.5E+02 0.0055 24.2 7.8 78 240-319 34-117 (132)
27 PF06738 DUF1212: Protein of u 32.1 3E+02 0.0066 24.2 8.3 49 264-320 125-173 (193)
28 PRK14202 camphor resistance pr 30.2 3.2E+02 0.007 23.4 7.9 80 242-325 41-127 (128)
29 PF11014 DUF2852: Protein of u 29.8 96 0.0021 26.9 4.5 39 104-146 8-46 (115)
30 PF12188 STAT2_C: Signal trans 29.5 16 0.00034 27.9 -0.3 36 11-46 2-38 (56)
31 PRK14228 camphor resistance pr 29.3 3.5E+02 0.0077 23.1 7.9 72 240-320 38-117 (122)
32 COG4413 Utp Urea transporter [ 29.1 91 0.002 30.9 4.7 136 159-306 14-172 (319)
33 PRK06814 acylglycerophosphoeth 28.4 8.7E+02 0.019 27.1 14.4 21 271-291 342-362 (1140)
34 COG4060 MtrD Tetrahydromethano 27.7 1.2E+02 0.0026 28.6 5.0 95 223-317 115-226 (230)
35 PRK14217 camphor resistance pr 27.2 3E+02 0.0065 23.9 7.2 71 242-318 40-119 (134)
36 PRK14224 camphor resistance pr 26.3 3.7E+02 0.008 23.2 7.5 76 241-321 37-117 (126)
37 PRK14225 camphor resistance pr 26.2 3.1E+02 0.0068 23.9 7.1 75 243-321 48-131 (137)
38 PRK14218 camphor resistance pr 26.1 4E+02 0.0086 23.2 7.8 78 242-321 44-126 (133)
39 PRK14195 camphor resistance pr 25.7 3.7E+02 0.0081 22.9 7.4 79 242-321 38-120 (125)
40 COG5336 Uncharacterized protei 25.2 1.2E+02 0.0027 26.2 4.3 56 105-161 54-113 (116)
41 PRK14208 camphor resistance pr 24.0 3.3E+02 0.0071 23.4 6.8 73 242-320 38-119 (126)
42 PRK14198 camphor resistance pr 23.9 4.5E+02 0.0098 22.4 7.6 73 242-320 37-118 (124)
43 PRK14209 camphor resistance pr 23.8 4.7E+02 0.01 22.5 7.8 83 240-325 36-122 (124)
44 PRK14200 camphor resistance pr 23.4 4.8E+02 0.01 22.5 8.3 73 243-321 42-123 (127)
45 PRK14231 camphor resistance pr 23.2 3.7E+02 0.0081 23.2 7.0 72 242-319 34-114 (129)
46 TIGR02711 symport_actP cation/ 23.1 2.3E+02 0.0051 29.7 6.8 23 95-117 449-471 (549)
47 PRK14234 camphor resistance pr 22.7 4.8E+02 0.01 22.2 7.5 72 243-320 40-120 (124)
48 PRK14199 camphor resistance pr 22.6 3.5E+02 0.0076 23.3 6.7 73 242-320 41-122 (128)
49 KOG2881 Predicted membrane pro 22.1 2E+02 0.0044 28.6 5.6 56 90-145 87-153 (294)
50 PRK14206 camphor resistance pr 21.8 5.1E+02 0.011 22.1 7.6 74 243-322 38-122 (127)
51 PRK14230 camphor resistance pr 21.8 5.1E+02 0.011 22.1 7.7 73 242-321 37-114 (119)
52 PF04973 NMN_transporter: Nico 21.8 5.7E+02 0.012 22.7 8.1 70 97-167 20-91 (181)
53 PF08570 DUF1761: Protein of u 21.8 3.7E+02 0.0081 22.4 6.6 14 143-156 24-37 (126)
54 PRK14203 camphor resistance pr 21.4 5.3E+02 0.012 22.2 7.6 75 242-320 42-125 (132)
55 COG4854 Predicted membrane pro 20.8 4.6E+02 0.01 23.0 6.9 67 104-171 9-81 (126)
56 PHA02723 hypothetical protein; 20.7 22 0.00048 28.0 -0.9 13 294-306 40-52 (77)
57 PRK14216 camphor resistance pr 20.4 5.2E+02 0.011 22.4 7.3 75 242-320 42-123 (132)
No 1
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=100.00 E-value=5.2e-71 Score=512.85 Aligned_cols=232 Identities=37% Similarity=0.615 Sum_probs=213.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhhhhcchhhhhhhhhhhhcCC
Q 020374 79 TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKG 158 (327)
Q Consensus 79 ~~~~a~~~n~~~~~a~~~~~~ksLT~sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl~sS~~TK~k~~~K~~l~~~~k~~G 158 (327)
+|..++++|.++ +..+||+|+||++|+++|+++|++++...|++++.+++.||++||++||+|+++|++++++|||+|
T Consensus 3 ~~~~a~~~~~~l--~~~~~~~~~L~~sG~~~a~~vG~~~~~~~g~~~~~~ll~Ff~~sS~~Tk~~~~~K~~~~~~e~~gg 80 (237)
T TIGR00297 3 LWLSAVILCVFL--LALAAYAPLLDPWGYGHAWIMGVIIILFAGFRGLLVILAFFFLGSAVTRYGQEEKKAAGIAEKRSG 80 (237)
T ss_pred HHHHHHHHHHHH--HHHHHHHccCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHhccHHHHHhcccccccCC
Confidence 478888888766 467889999999999999999999987899999999999999999999999999999999999999
Q ss_pred ccCcccccccchHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccc
Q 020374 159 RRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVS 238 (327)
Q Consensus 159 ~R~~~QVlaNg~~a~~~all~~~~~~~~~~~~~~~l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVS 238 (327)
+||++||+|||+++++|+++|.+... .+..+.++|++++||++|||||||||++|+++||+||||||||||||||||
T Consensus 81 ~R~~~qVlaNg~~~~~~al~~~~~~~---~~~~~~~~f~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS 157 (237)
T TIGR00297 81 QRGPKNVWGNGLTPALFALAIAFGPE---WDLWLALGYVASVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAIS 157 (237)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCccc
Confidence 99999999999999999998877533 245677999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHhhhHHHHHHhhhhhhhccCCCccccchhhHHHHHHHHHHHHHHHH
Q 020374 239 VEGTFAGIFASILLAWVGCLTGQINAPEAVICVIASQIANLGESIIGAALQEKPGFKWLNNDAVNIINISMGSILAVLMQ 318 (327)
Q Consensus 239 llGtlAsllGs~lIa~~a~ll~~i~~~~~~~~~laG~lGsllDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~galla~~~~ 318 (327)
++||+|+++|+++|+..+++++..+.+..++++++|++|+++||+||||+|+| | |+|||.||+++|+++++++++++
T Consensus 158 ~~Gt~As~~Ga~~I~~~~~~~~~~~~~~~~~~~~aG~~Gsl~DSlLGAtlQ~~-g--~l~N~~VN~l~t~~g~~~a~~~~ 234 (237)
T TIGR00297 158 VEGTLAGFAGALAIALLGYLLGLISFKGILFSTLAAFAGTNLDSLLGATLERK-G--YLTNEHVNLIATFLGAIIGIGIE 234 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhHHHhhc-c--ccccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998888876666666788899999999999999999996 4 99999999999999999998875
No 2
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.3e-70 Score=505.75 Aligned_cols=221 Identities=38% Similarity=0.524 Sum_probs=207.0
Q ss_pred HHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhhhhcchhhhhhhhhhhhcCCccCcccccccc
Q 020374 90 IFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSS 169 (327)
Q Consensus 90 ~~~a~~~~~~ksLT~sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl~sS~~TK~k~~~K~~l~~~~k~~G~R~~~QVlaNg 169 (327)
++++..+||+|+||++|+++|+++|++++...||+++++|+.||++||++||+|+++|++++++|+|+|+|||+||+|||
T Consensus 6 ~~l~~~a~~~k~Lt~sGa~aa~~vG~~~~~~~g~~~~~~L~~FF~~ss~~Tk~~~~~K~~~~~~~~~~g~R~~~QVlaNg 85 (226)
T PF01940_consen 6 LLLAILAYKKKSLTLSGALAAFLVGTLIYGFGGWPWFLLLLAFFISSSLATKYKKERKEKLGEAEKKGGRRDWWQVLANG 85 (226)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCChHHHHHhcccccCCCCCChHHhhhcc
Confidence 34567889999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHH
Q 020374 170 AAGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFAS 249 (327)
Q Consensus 170 ~~a~~~all~~~~~~~~~~~~~~~l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs 249 (327)
+++++|+++|.+.. +..++.+.++|++++||++|||||||||++|+++||+||||||||||||||||++||+|+++|+
T Consensus 86 ~~a~~~al~~~~~~--~~~~~~~~~~~~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga 163 (226)
T PF01940_consen 86 GVAALCALLYAFFP--STPAPLLLLAFLGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGA 163 (226)
T ss_pred HHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHH
Confidence 99999999987753 1235688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHhhhHHHHHHhhhhhhhccCCCccccchhhHHHHHHHHHHHH
Q 020374 250 ILLAWVGCLTGQINAPEAVICVIASQIANLGESIIGAALQEKPGFKWLNNDAVNIINISMGSILA 314 (327)
Q Consensus 250 ~lIa~~a~ll~~i~~~~~~~~~laG~lGsllDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~galla 314 (327)
++|+.+++++...+.+.+++++++|++||++||+||||+|+ |++|+|||.|||+++++++++|
T Consensus 164 ~~Ia~~~~~~~~~~~~~~~~~~~~G~~Gsl~DSlLGAtlQ~--G~~~l~N~~VN~lstl~~al~A 226 (226)
T PF01940_consen 164 LLIALVAFLLGLISFPLVLLIALAGFLGSLLDSLLGATLQR--GRGWLNNDAVNFLSTLIGALVA 226 (226)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhHHHhC--CCCCcChhHHHHHHHHHHHHhC
Confidence 99999999988777777888899999999999999999999 6899999999999999999875
No 3
>COG1836 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-63 Score=462.05 Aligned_cols=235 Identities=36% Similarity=0.468 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhhhhcchhhhhhhhhhhhcCC
Q 020374 79 TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKG 158 (327)
Q Consensus 79 ~~~~a~~~n~~~~~a~~~~~~ksLT~sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl~sS~~TK~k~~~K~~l~~~~k~~G 158 (327)
.|+.+++++..+ .+.+||.|.||++|.++|+++|.+++...|++||++++.||++||.+||+|+++|++++.+|+++|
T Consensus 12 ~~l~all~~~~L--~~la~~~k~Ld~~G~~~A~~lG~~i~~~~g~~~fllll~Ff~~g~l~Tk~~~~~K~~~gvaE~~~g 89 (247)
T COG1836 12 PLLLALLLILFL--GALAYKAKALDLSGSLSAILLGALIIVFGGFKWFLLLLIFFALGSLATKYKYEEKEALGVAEGRDG 89 (247)
T ss_pred HHHHHHHHHHHH--HHHHHHhccCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 467777777666 467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccchHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccc
Q 020374 159 RRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVS 238 (327)
Q Consensus 159 ~R~~~QVlaNg~~a~~~all~~~~~~~~~~~~~~~l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVS 238 (327)
.|+.+||++|+.++.+|+++|....+ .+..+..+|++|+|+++|||||||||+.++++|||||||||||||||||||
T Consensus 90 ~R~~~NV~gn~l~~~l~av~~~~~~~---~~~~~~~~~~~SvAta~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS 166 (247)
T COG1836 90 ARSLENVLGNGLAALLFAVLYAIYPD---PQLWFLGGFAASVATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVS 166 (247)
T ss_pred cccHHHHhhccHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccc
Confidence 99999999999999999998754322 134678999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHhhhHHHHHHhhhhhhhccCCCccccchhhHHHHHHHHHHHHHHHH
Q 020374 239 VEGTFAGIFASILLAWVGCLTGQINAPEAVICVIASQIANLGESIIGAALQEKPGFKWLNNDAVNIINISMGSILAVLMQ 318 (327)
Q Consensus 239 llGtlAsllGs~lIa~~a~ll~~i~~~~~~~~~laG~lGsllDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~galla~~~~ 318 (327)
++||+|+++|+++|++++++++..+.+....++++||+|+++||++|||+|+| .|||||.|||++|+.+++++++++
T Consensus 167 ~~GelAav~Ga~iIal~~~l~~~~~~~~v~~vtlaGf~G~~iDSllGAtle~k---g~LtN~~VNflaT~~ga~i~i~i~ 243 (247)
T COG1836 167 LVGELAAVAGAFIIALLSYLVGYISLGGVLSVTLAGFAGTNIDSLLGATLERK---GYLTNEGVNFLATFLGAIIGILIF 243 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhHHHHhhHHHHhh---eeecccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988766777889999999999999999999997 389999999999999999999887
Q ss_pred HHH
Q 020374 319 QIV 321 (327)
Q Consensus 319 ~~~ 321 (327)
..+
T Consensus 244 l~~ 246 (247)
T COG1836 244 LIL 246 (247)
T ss_pred Hhh
Confidence 653
No 4
>KOG4491 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.1e-56 Score=414.87 Aligned_cols=236 Identities=26% Similarity=0.355 Sum_probs=201.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHH-HHHhhchhhHHHHHHHHHhhhhhhhcchhhhhhhhhhhhcC
Q 020374 79 TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTL-TWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRK 157 (327)
Q Consensus 79 ~~~~a~~~n~~~~~a~~~~~~ksLT~sGa~aA~lvG~l-~~~~~G~~gf~lLl~FFl~sS~~TK~k~~~K~~l~~~~k~~ 157 (327)
.|+.+.++..++ +..+||||+||.||++++++||++ ++. ..+.|..|++||++||++||+|++.|++++.+|+|+
T Consensus 41 RwlFsvvvp~li--~~~~lkrkSld~SGa~~G~lV~filtIa--~h~ff~sl~~fF~sss~~tkfr~~~k~r~~s~~~eg 116 (323)
T KOG4491|consen 41 RWLFSVVVPVLI--VSNGLKRKSLDHSGALGGLLVGFILTIA--NHSFFTSLLMFFLSSSKLTKFRGEVKKRLDSEYKEG 116 (323)
T ss_pred HHHHHHHHHHHH--HHHHHhhcccccccchhHHHHHHHHHHh--cchhHHHHHHHHHccchhhhHHHHHHHHHHHHHhhc
Confidence 777777766655 467899999999999999999997 442 334688999999999999999999999999998875
Q ss_pred -CccCcccccccchHHHHHHHHHHHhcCCcc----h-----hHHHHHHHHHHHHHhhccchhhhhh-cccCCceeEeeCC
Q 020374 158 -GRRGPGSVIGSSAAGCVCAFLSIFGVGGFE----F-----SRLWQLGFVASFCTKLSDTVSSEIG-KAYGKTTYLVTTF 226 (327)
Q Consensus 158 -G~R~~~QVlaNg~~a~~~all~~~~~~~~~----~-----~~~~~l~fvas~Aaa~ADTwASEIG-~ls~~~PrLITT~ 226 (327)
|||+|.||+|||+++..++++|....++.. + .....++.++++|||++|||+||+| ++|+++||+||||
T Consensus 117 ~GQRNWvQVlCNggva~~Lally~~~~G~ge~~vDf~~~y~~swl~~~~~~a~ACcnGDTWsSElG~VLS~~~PrlItTw 196 (323)
T KOG4491|consen 117 LGQRNWVQVLCNGGVATELALLYMIENGPGEIPVDFSKQYSASWLCLSLLAALACCNGDTWSSELGPVLSKSSPRLITTW 196 (323)
T ss_pred cCccchhhhhcCCcchHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHhcCCChhhhhhcchhccCCCceEEee
Confidence 999999999999999999999988776531 1 2234588999999999999999999 8889999999999
Q ss_pred eecCCCCCcccchhHHHHHHHHHHHHHHHHHHhhc--------CCchhHHHH---HHHhhhHHHHHHhhhhhhhcc----
Q 020374 227 KVVPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQ--------INAPEAVIC---VIASQIANLGESIIGAALQEK---- 291 (327)
Q Consensus 227 k~VppGTnGgVSllGtlAsllGs~lIa~~a~ll~~--------i~~~~~~~~---~laG~lGsllDSlLGAtlQ~k---- 291 (327)
||||+|||||||..|.+++++|+.++++..++... ++.+|+.++ .++|++|+++||+||||+|..
T Consensus 197 ~~Vp~GTNGGVt~~Gl~~sLlgGt~VG~~yf~t~l~tv~c~ldis~pQwpiIafgglAGL~GSlvDS~LGat~QfsG~~e 276 (323)
T KOG4491|consen 197 EKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLTQLITVNCDLDISAPQWPIIAFGGLAGLLGSLVDSYLGATMQFSGFNE 276 (323)
T ss_pred eecccCCCCCEeeHHHHHHHhccceeehHhhhhhhheeecccccCcccCcEeehhhHHHHHHHHHHHHhhhheeeccccc
Confidence 99999999999999999999999999865554432 345676554 478999999999999999982
Q ss_pred ----------------CCCccccchhhHHHHHHHHHHHHHHHH
Q 020374 292 ----------------PGFKWLNNDAVNIINISMGSILAVLMQ 318 (327)
Q Consensus 292 ----------------~G~~~L~Nd~VN~lstl~galla~~~~ 318 (327)
+|.++||||.||+++++..+++--..+
T Consensus 277 ~~gkvV~~Pg~~vrhisG~~ILDNn~VNlvSsllt~~l~p~aa 319 (323)
T KOG4491|consen 277 VRGKVVGKPGKKVRHISGVDILDNNGVNLVSSLLTSFLTPIAA 319 (323)
T ss_pred ccCeeecCCCccceeecCcccccCCchhhHHHHHHHHHHHhhH
Confidence 589999999999999998888754443
No 5
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=96.48 E-value=0.012 Score=53.44 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=57.7
Q ss_pred HHHHHHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHHHhhcC---CchhH----H
Q 020374 196 FVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQI---NAPEA----V 268 (327)
Q Consensus 196 fvas~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs~lIa~~a~ll~~i---~~~~~----~ 268 (327)
+.+-...+.+|++|+=+|+.++|++ +.+ .+..=|+||++++++++++++.+....... +.... .
T Consensus 133 ~~~i~~~~~gD~~A~l~G~~fGk~~-----~~~----~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 203 (259)
T PF01148_consen 133 LIGILILGIGDSFAYLVGRRFGKHL-----APK----ISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISL 203 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc-----CCC----CCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3445667789999999999999861 112 233339999999999999987665443221 11111 2
Q ss_pred HHHHHhhhHHHHHHhhhhhhhcc
Q 020374 269 ICVIASQIANLGESIIGAALQEK 291 (327)
Q Consensus 269 ~~~laG~lGsllDSlLGAtlQ~k 291 (327)
+..+.+.+|.+++|.+=....-|
T Consensus 204 ~~~i~~~~gdl~~S~~KR~~~iK 226 (259)
T PF01148_consen 204 LASIVEAFGDLFESAIKRDAGIK 226 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 23356677888889885555544
No 6
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=95.41 E-value=0.88 Score=42.34 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q 020374 194 LGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQINAPEAVICVIA 273 (327)
Q Consensus 194 l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs~lIa~~a~ll~~i~~~~~~~~~la 273 (327)
+..++=++.+.+|+.||=+|+.++++++-.-+-| |++|++|.+..++++..+.+... ....
T Consensus 115 ~~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~K----------SleGSla~fi~~~l~~~~~~~~~---------~~~~ 175 (216)
T COG0170 115 VAIAGILVLALGDGLASIIGKRYGRHKRILGNGK----------SLEGSLAFFIASFLVLLVLYGYL---------GAFV 175 (216)
T ss_pred HHHHHHHHHHHhhHHHHHhCcccCccccccCCCC----------chhhhHHHHHHHHHHHHHHHHHH---------HhHH
Confidence 4455557778999999999999998744444434 89999999999999865433211 1111
Q ss_pred hhhHHHHHHhhhhhhhccCCCccccchhhHHHHHHHH
Q 020374 274 SQIANLGESIIGAALQEKPGFKWLNNDAVNIINISMG 310 (327)
Q Consensus 274 G~lGsllDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~g 310 (327)
+.++..+ ..++++.+..++.++-||=.|=+.+.++.
T Consensus 176 ~~i~~~~-~~~~~~~~~~~~~~~~DNltIPl~~~~~~ 211 (216)
T COG0170 176 GAIGALV-LEVGATATSLELLPLDDNLTIPLFAALLA 211 (216)
T ss_pred HHHHHHH-HHHHHHHhhccCCCCCCceeHHHHHHHHH
Confidence 2222222 22333334333566677766666665443
No 7
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=94.03 E-value=0.23 Score=47.08 Aligned_cols=89 Identities=21% Similarity=0.217 Sum_probs=65.7
Q ss_pred HHHHHHHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHHHhhc---CCch----hH
Q 020374 195 GFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQ---INAP----EA 267 (327)
Q Consensus 195 ~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs~lIa~~a~ll~~---i~~~----~~ 267 (327)
.+......-.+|+.|+=+|+..+|+| -.|-.|-.-|+||.+.|++++.+++........ .+.. ..
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~k--------l~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~ 207 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHK--------LAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILG 207 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCC--------CCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34445666779999999999999976 334456667999999999999998866443321 1111 12
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhcc
Q 020374 268 VICVIASQIANLGESIIGAALQEK 291 (327)
Q Consensus 268 ~~~~laG~lGsllDSlLGAtlQ~k 291 (327)
.++.+.+.+|-++||.+...++-|
T Consensus 208 ~~~~l~~~lGDL~eS~iKR~~gvK 231 (265)
T COG0575 208 LLLVLTSQLGDLFESYIKRLLGIK 231 (265)
T ss_pred HHHHHHHHHhhHHHHHHHHccCCC
Confidence 345578899999999999999987
No 8
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=83.46 E-value=4 Score=39.53 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=59.9
Q ss_pred HHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHHHhhcC--CchhH----HHHHHH
Q 020374 200 FCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQI--NAPEA----VICVIA 273 (327)
Q Consensus 200 ~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs~lIa~~a~ll~~i--~~~~~----~~~~la 273 (327)
+.+-.+||.|==.|+..+|++ + ..++.|+. |+||.+.|++++.+++.+....... +.... .++.+.
T Consensus 159 ~~vw~sDt~AYf~Gr~fGk~K-L---~P~ISPkK----TwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (285)
T PRK11624 159 ILVWGADSGAYMFGKLFGKHK-L---APKVSPGK----TWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALA 230 (285)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-C---CCcCCCCC----chhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 446679999999999998843 2 23555554 8999999999999988655333222 11111 334567
Q ss_pred hhhHHHHHHhhhhhhhcc
Q 020374 274 SQIANLGESIIGAALQEK 291 (327)
Q Consensus 274 G~lGsllDSlLGAtlQ~k 291 (327)
|.+|.++||.+=...+-|
T Consensus 231 ~~~GDL~ES~lKR~~gVK 248 (285)
T PRK11624 231 SVLGDLTESMFKREAGIK 248 (285)
T ss_pred HHHhHHHHHHHhhccCCC
Confidence 899999999998888776
No 9
>PLN02953 phosphatidate cytidylyltransferase
Probab=81.10 E-value=4.6 Score=41.43 Aligned_cols=84 Identities=24% Similarity=0.234 Sum_probs=58.0
Q ss_pred HHHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHH-Hhhc-CCchh----HHHHHH
Q 020374 199 SFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGC-LTGQ-INAPE----AVICVI 272 (327)
Q Consensus 199 s~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs~lIa~~a~-ll~~-i~~~~----~~~~~l 272 (327)
-.+.-.+||+|=-.|+..+|++. . ++.|+ =|++|.+.|++++.+++.+.. ++.. ....+ ..++.+
T Consensus 275 ~~~vw~~Di~AY~~G~~fGk~kl--~---~ISPk----KTwEG~iGGil~~vlv~~l~~~~l~~~~~~~~~i~lg~li~~ 345 (403)
T PLN02953 275 FSGVIATDTFAFLGGKAFGRTPL--T---SISPK----KTWEGTFVGLVGCIAITILLSKSLSWPQSLFSSIAFGFLNFF 345 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--C---cCCCC----CeeeeehhHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 34556789999999999998653 1 44443 589999999999999886553 2221 11111 133456
Q ss_pred HhhhHHHHHHhhhhhhhcc
Q 020374 273 ASQIANLGESIIGAALQEK 291 (327)
Q Consensus 273 aG~lGsllDSlLGAtlQ~k 291 (327)
.|++|.+++|.+=.-.+-|
T Consensus 346 ~~~~GDL~eS~iKR~~gVK 364 (403)
T PLN02953 346 GSVFGDLTESMIKRDAGVK 364 (403)
T ss_pred HHHhhHHHHHHHhHccCCC
Confidence 7889999999987777766
No 10
>PRK04032 hypothetical protein; Provisional
Probab=75.47 E-value=6.3 Score=35.66 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=41.9
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHhhcCC---chh----HHHHHHHhhhHHHHHHhhhhhhhccCC
Q 020374 233 TEGAVSVEGTFAGIFASILLAWVGCLTGQIN---APE----AVICVIASQIANLGESIIGAALQEKPG 293 (327)
Q Consensus 233 TnGgVSllGtlAsllGs~lIa~~a~ll~~i~---~~~----~~~~~laG~lGsllDSlLGAtlQ~k~G 293 (327)
.|=.=|++|.+.|++++.+.+.+........ ... ..++.++|.+|.+++|.+=.-.+-|.|
T Consensus 33 iSP~KTwEG~iGGv~~~~l~~~~~~~~~~~~~~~~~~~~~~g~li~v~~~~GDL~eS~iKR~~gVKDg 100 (159)
T PRK04032 33 LGDGKTWRGLIGGILFGTLVGLIQNLLVPAYIGALGVAIILAFLLSFGALLGDMLGSFIKRRLGLERG 100 (159)
T ss_pred CCCCCcHHHhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCCc
Confidence 4446699999999999998876553322111 111 134457889999999999888887754
No 11
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=57.73 E-value=30 Score=34.06 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=54.1
Q ss_pred HHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHHHhhcCCchhH----HHHHHHhhh
Q 020374 201 CTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQINAPEA----VICVIASQI 276 (327)
Q Consensus 201 Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs~lIa~~a~ll~~i~~~~~----~~~~laG~l 276 (327)
.+-..|-.-=--|+..+| +||.|-.|=.=|++|.+.|.+-..+.+.+...+...+..+. +.+.+.||+
T Consensus 182 ~~q~nDV~QYvwGk~fGk--------~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~~lTp~~~lqa~~~~~~I~l~GF~ 253 (303)
T COG4589 182 LTELNDVAQYVWGKSFGK--------RKIVPKVSPNKTVEGLIGGILTTMIASAILGLLTPLNTLQALLAGLLIGLSGFC 253 (303)
T ss_pred HHHHHHHHHHHHhhhcCC--------cccCCCcCCcchHHHHhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh
Confidence 345566665566777766 56667777777888888888877777766665655555443 355678999
Q ss_pred HHHHHHhhhhhh
Q 020374 277 ANLGESIIGAAL 288 (327)
Q Consensus 277 GsllDSlLGAtl 288 (327)
|.++=|=+=.-+
T Consensus 254 GdlvmSaiKRd~ 265 (303)
T COG4589 254 GDLVMSAIKRDV 265 (303)
T ss_pred hHHHHHHHHhhc
Confidence 988776554433
No 12
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=55.34 E-value=26 Score=36.89 Aligned_cols=53 Identities=30% Similarity=0.453 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHH
Q 020374 193 QLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVG 256 (327)
Q Consensus 193 ~l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs~lIa~~a 256 (327)
+.-+.|-+|--.+||.||=+|+-+|+. .|+ || -=|+|||+|++...+++..+-
T Consensus 410 l~~laGiLalGiGDTmASiiG~r~G~~-----RW~----~T--kKTlEGT~Afivs~~iv~~ll 462 (510)
T KOG2468|consen 410 LALLAGILALGIGDTMASIIGKRYGRI-----RWS----GT--KKTLEGTLAFIVSSFIVCLLL 462 (510)
T ss_pred hhhhhhheeeccchHHHHHHhhhhcce-----ecC----CC--cceeehhhHHHHHHHHHHHHH
Confidence 344566677788999999999999873 244 44 348999999999888775443
No 13
>PRK10484 putative transporter; Provisional
Probab=44.65 E-value=1e+02 Score=31.89 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=19.2
Q ss_pred hhhhhcCCChhHHHHHHHHHHHH
Q 020374 95 SPILVSGLSPSGIAAAFLLGTLT 117 (327)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~ 117 (327)
.++.-|..|..|++++.++|.+.
T Consensus 423 lgl~wkr~n~~ga~~g~i~G~~~ 445 (523)
T PRK10484 423 VGFFTKRVPALAAKVALGFGIIL 445 (523)
T ss_pred HHHHhCcCChHHHHHHHHHHHHH
Confidence 45567789999999999999865
No 14
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=44.63 E-value=1.5e+02 Score=28.99 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=48.7
Q ss_pred cchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHHHHh----h--cC--C--chhHHHHHHHhh
Q 020374 206 DTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLT----G--QI--N--APEAVICVIASQ 275 (327)
Q Consensus 206 DTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs~lIa~~a~ll----~--~i--~--~~~~~~~~laG~ 275 (327)
||-|+-+|.-+++. |. |+.|- =|+.|.++.+.-++++..+.+-. + .+ + ......+.+.|+
T Consensus 169 Dt~AdtvGRKfG~~-----tp-k~akn----KSlAGSIgaft~Gvf~c~vy~gyf~s~g~~~l~~s~r~~~~~l~l~~g~ 238 (269)
T KOG4453|consen 169 DTIADTVGRKFGST-----TP-KYAKN----KSLAGSIGAFTFGVFICIVYLGYFSSLGPDYLHMSWRETTLQLVLMVGM 238 (269)
T ss_pred hhHHHHHhhhcccc-----CC-CcCCC----ccccchHHHHHHHHHHHHHHHHHHhccCcchhccccccchHHHHHHHHH
Confidence 99999999998874 11 22222 36778888888888877544322 1 11 1 112344555555
Q ss_pred hHHHHHHhhhhhhhccCCCccccchhhHHHHHHH
Q 020374 276 IANLGESIIGAALQEKPGFKWLNNDAVNIINISM 309 (327)
Q Consensus 276 lGsllDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~ 309 (327)
++.+.||+ .=++|=||=.+-+.+.+.
T Consensus 239 vaAlvEsl--------di~~lDDNltIpv~Sal~ 264 (269)
T KOG4453|consen 239 VAALVESL--------DITDLDDNLTIPVASALA 264 (269)
T ss_pred HHHHHhcC--------CccCCCCCeeehHHHHHH
Confidence 55555442 224455666676666543
No 15
>PRK14212 camphor resistance protein CrcB; Provisional
Probab=44.35 E-value=98 Score=26.64 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcC--CchhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQI--NAPEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGSI 312 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~i--~~~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~gal 312 (327)
.+.=++|+++++++..+.... ..+.+......||+|. ..|++ ..+|.+ +| ..-..|...++++++
T Consensus 38 l~vN~~GsfllG~~~~~~~~~~~~~~~~~~~l~tGflGgfTTFSTf~~E~~--~l~~~~---~~-~~a~~y~~~s~~~gl 111 (128)
T PRK14212 38 LIVNCLGCFVLGFLMQWGFSSDSHNTHLKLMLTAGFLGAFTTFSTFSYETL--DCFKAG---DY-FNGFSNILANVLLGL 111 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhhHhcCcccHHHHHHHHH--HHHHCC---CH-HHHHHHHHHHHHHHH
Confidence 346788999999876554221 1223334456788884 34444 233443 12 233456666666666
Q ss_pred HHHHHHH
Q 020374 313 LAVLMQQ 319 (327)
Q Consensus 313 la~~~~~ 319 (327)
++..+..
T Consensus 112 ~a~~lG~ 118 (128)
T PRK14212 112 LMVFIGA 118 (128)
T ss_pred HHHHHHH
Confidence 5555443
No 16
>COG0239 CrcB Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]
Probab=39.98 E-value=1.3e+02 Score=26.16 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCCchhHHHHHHHhhhHHH-------HHHhhhhhhhccCCCccccchhhHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTG--QINAPEAVICVIASQIANL-------GESIIGAALQEKPGFKWLNNDAVNIINISMGSI 312 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~--~i~~~~~~~~~laG~lGsl-------lDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~gal 312 (327)
..+=++|+++++.+..+.. ....+.+-.....||+|.+ .|++ ..+|+++-..-+-|-.+|++.++++..
T Consensus 39 l~vNv~GsFllG~~~~~~~~~~~~~~~~~~~l~tGflGglTTFSTfs~E~~--~L~~~~~~~~a~~yi~~sv~~gl~a~~ 116 (126)
T COG0239 39 LLVNVVGSFLLGFLTALFAVRLISSEDWRLLLGTGFLGGLTTFSTFSLETV--SLLQEGQYLLALAYILLSVLLGLLAVF 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHccchhhHHHHHHHHH--HHHHCccHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999998776553 2333335555667888732 2322 123332212234555566665555555
Q ss_pred HHHHHHH
Q 020374 313 LAVLMQQ 319 (327)
Q Consensus 313 la~~~~~ 319 (327)
+++.+++
T Consensus 117 lG~~l~~ 123 (126)
T COG0239 117 LGLLLAR 123 (126)
T ss_pred HHHHHHH
Confidence 5554443
No 17
>PLN02594 phosphatidate cytidylyltransferase
Probab=39.59 E-value=71 Score=32.30 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=37.2
Q ss_pred HHHHhhccchhhhhhcccCCceeEeeCCeecCCCCCcccchhHHHHHHHHHHHHHHHH
Q 020374 199 SFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVG 256 (327)
Q Consensus 199 s~Aaa~ADTwASEIG~ls~~~PrLITT~k~VppGTnGgVSllGtlAsllGs~lIa~~a 256 (327)
.....+.||+|==.|+..||+|. + ++.|. =|+||.+.|.+++.+.+.+.
T Consensus 131 ~~lV~~nDi~AY~~G~~fGk~kL-~----~iSPk----KTwEGfiGg~i~T~i~~~~~ 179 (342)
T PLN02594 131 ASLIVINDIAAYLFGFFFGRTPL-I----KLSPK----KTWEGFIGASVTTLISAFYL 179 (342)
T ss_pred HHHHHHHhHHHHHHHHHhcCCCC-C----ccCCC----CchhhhHHHHHHHHHHHHHH
Confidence 34567799999999999999874 3 23332 27999999999988888654
No 18
>PRK12488 acetate permease; Provisional
Probab=38.29 E-value=1.3e+02 Score=31.42 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.8
Q ss_pred hhhhhcCCChhHHHHHHHHHHHH
Q 020374 95 SPILVSGLSPSGIAAAFLLGTLT 117 (327)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~ 117 (327)
.++.-|..|..|++++.++|...
T Consensus 449 lgl~wkr~t~~ga~ag~i~G~~~ 471 (549)
T PRK12488 449 LSMFWKGLTTRGAVAGSYAGLVS 471 (549)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Confidence 45556779999999999999754
No 19
>PRK14204 camphor resistance protein CrcB; Provisional
Probab=37.52 E-value=2.7e+02 Score=23.98 Aligned_cols=80 Identities=13% Similarity=0.257 Sum_probs=46.4
Q ss_pred hHHH-HHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHH
Q 020374 240 EGTF-AGIFASILLAWVGCLTGQINA-PEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMG 310 (327)
Q Consensus 240 lGtl-AsllGs~lIa~~a~ll~~i~~-~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~g 310 (327)
.||+ .=++|+++++++..+...... +.+-.....|++|. ..|++ ..+|++ + .-+-..|+..++++
T Consensus 38 ~gTl~VNi~GsfllG~l~~~~~~~~~~~~~~l~l~tGflGgfTTFSTf~~e~~--~l~~~~---~-~~~a~~y~~~s~~~ 111 (127)
T PRK14204 38 LGTFSVNIIGCFVIGFMGHLAAKKVFGDDFGIFFVTGVLGGFTTFSSYGLDTL--KLLQKS---Q-YIEAISYVLGTNLL 111 (127)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHccchhhHHHHHHHHH--HHHHCC---C-HHHHHHHHHHHHHH
Confidence 3444 678999999987655332222 22333445688883 23333 233443 1 23455678888888
Q ss_pred HHHHHHHHHHHHhhc
Q 020374 311 SILAVLMQQIVLQSL 325 (327)
Q Consensus 311 alla~~~~~~~~~~~ 325 (327)
++++..+.+.+.+.|
T Consensus 112 gl~a~~lG~~l~~~~ 126 (127)
T PRK14204 112 GLIGVAIGWFLAKNF 126 (127)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888777766555544
No 20
>PRK09395 actP acetate permease; Provisional
Probab=36.56 E-value=1.1e+02 Score=32.12 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.2
Q ss_pred hhhhhcCCChhHHHHHHHHHHHH
Q 020374 95 SPILVSGLSPSGIAAAFLLGTLT 117 (327)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~ 117 (327)
.++.-|..|..|++++.++|...
T Consensus 451 lglfwkr~~~~gA~ag~i~G~~~ 473 (551)
T PRK09395 451 LSMYWKGLTTRGAVIGGWLGLIS 473 (551)
T ss_pred HHHhcCCCchhhHHHHHHHHHHH
Confidence 55567789999999999999864
No 21
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.26 E-value=20 Score=33.78 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=24.4
Q ss_pred chhhhhhcccCCceeEee----CCeecCCCCCcccchhHH
Q 020374 207 TVSSEIGKAYGKTTYLVT----TFKVVPRGTEGAVSVEGT 242 (327)
Q Consensus 207 TwASEIG~ls~~~PrLIT----T~k~VppGTnGgVSllGt 242 (327)
+|+|.+++| ||.|| .+|+|++|++|-.-+.+.
T Consensus 152 ~F~~~VasL----pRIiTl~d~~i~~~~~~~ss~L~ls~~ 187 (211)
T COG3167 152 QFVSDVASL----PRIITLHDLKIKPVPEGKSSILNLSAR 187 (211)
T ss_pred HHHHHHhhc----ceeeeeecceeccCCCCCcceEEeeeh
Confidence 467788888 78887 588999999986655443
No 22
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.27 E-value=34 Score=29.68 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 020374 106 GIAAAFLLGTLTWRAFGPSGFLLVATYFI 134 (327)
Q Consensus 106 Ga~aA~lvG~l~~~~~G~~gf~lLl~FFl 134 (327)
|+++++++|.+ +|.-+.++|+.|++
T Consensus 64 ~~i~~Ii~gv~----aGvIg~Illi~y~i 88 (122)
T PF01102_consen 64 PAIIGIIFGVM----AGVIGIILLISYCI 88 (122)
T ss_dssp TCHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cceeehhHHHH----HHHHHHHHHHHHHH
Confidence 34555555553 22223445566655
No 23
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.67 E-value=81 Score=23.35 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhhhhcc
Q 020374 104 PSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVK 143 (327)
Q Consensus 104 ~sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl~sS~~TK~k 143 (327)
.-|.+.++++|.+.. .+|....++++.+-..|..+-|+.
T Consensus 11 iiG~~~G~ila~l~l-~~GF~~tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 11 IIGGLIGLILALLIL-TFGFWKTLFILLFAAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888665 567655566677777777766653
No 24
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=34.51 E-value=1.4e+02 Score=27.15 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhhhhhcchhhhhhhhhhhhcCCccCcccccccchHHHHHHHH
Q 020374 126 FLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFL 178 (327)
Q Consensus 126 f~lLl~FFl~sS~~TK~k~~~K~~l~~~~k~~G~R~~~QVlaNg~~a~~~all 178 (327)
..++++.++.|-.+.|...-+--+.-.++-+.| |.+.+-+.+|+.-.+.+++
T Consensus 33 l~Lvilt~~~G~~l~r~qG~~~l~~~q~~~~~G-~~P~~~ll~g~~~~vagiL 84 (158)
T COG3030 33 LLLVILTSVLGALLLRVQGFGTLLRAQAALASG-EVPGAELLDGLLLIIAGIL 84 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHhHHHHHHHHH
Confidence 346667778888888876554333333344566 8899999999766665554
No 25
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.36 E-value=71 Score=23.63 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHh-hhHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQINAPEAVICVIAS-QIANLGE 281 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~i~~~~~~~~~laG-~lGsllD 281 (327)
-..|.+-++++|++....|....--..+|+..| ++|..+|
T Consensus 10 ~iiG~~~G~ila~l~l~~GF~~tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 10 KIIGGLIGLILALLILTFGFWKTLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555544433322221234455555 4666666
No 26
>PRK14219 camphor resistance protein CrcB; Provisional
Probab=33.72 E-value=2.5e+02 Score=24.19 Aligned_cols=78 Identities=13% Similarity=0.233 Sum_probs=40.2
Q ss_pred hHHH-HHHHHHHHHHHHHHHhhcCC--chhHHHHHHHhhhHH--HHHHhhhhhhhc-cCCCccccchhhHHHHHHHHHHH
Q 020374 240 EGTF-AGIFASILLAWVGCLTGQIN--APEAVICVIASQIAN--LGESIIGAALQE-KPGFKWLNNDAVNIINISMGSIL 313 (327)
Q Consensus 240 lGtl-AsllGs~lIa~~a~ll~~i~--~~~~~~~~laG~lGs--llDSlLGAtlQ~-k~G~~~L~Nd~VN~lstl~gall 313 (327)
.||+ .=++|+++++++..+..... .+.+-..+..||+|. -+-|+.=-++|- ++| +| ..-..|.+.+++++++
T Consensus 34 ~gTl~vNi~GsfllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~E~~~l~~~~-~~-~~a~~y~~~sl~~gl~ 111 (132)
T PRK14219 34 LATLLINLAGCFLLAWLTTYIAKLNILPSDVITGIGTGFIGSFTTFSTFSVETIQLINHS-EW-SIAFLYVSCSILGGLI 111 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHccchhhHHHHHHHHHHHHHCC-cH-HHHHHHHHHHHHHHHH
Confidence 3444 66789999998765543221 123334456788883 333333333332 111 22 2344566666666666
Q ss_pred HHHHHH
Q 020374 314 AVLMQQ 319 (327)
Q Consensus 314 a~~~~~ 319 (327)
+..+..
T Consensus 112 a~~lG~ 117 (132)
T PRK14219 112 MSGLGY 117 (132)
T ss_pred HHHHHH
Confidence 554443
No 27
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=32.11 E-value=3e+02 Score=24.24 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=31.1
Q ss_pred chhHHHHHHHhhhHHHHHHhhhhhhhccCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 020374 264 APEAVICVIASQIANLGESIIGAALQEKPGFKWLNNDAVNIINISMGSILAVLMQQI 320 (327)
Q Consensus 264 ~~~~~~~~laG~lGsllDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~galla~~~~~~ 320 (327)
+.......+.|+++.++.-++ +++ -++.-..|+++++++++++.++.+.
T Consensus 125 ~~~~~~a~i~g~~~~~~~~~~----~r~----~~~~~~~~~~aa~~~~~~a~~~~~~ 173 (193)
T PF06738_consen 125 WIDMIVAFILGLLVGLLRQLL----SRR----RLNSFIQEFIAAFLASLLAALLARL 173 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----Hhc----cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445556666666554443 222 2566678899999999988887644
No 28
>PRK14202 camphor resistance protein CrcB; Provisional
Probab=30.20 E-value=3.2e+02 Score=23.41 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--chhHHHHHHHhhhHH--HHHHhhhh---hhhccCCCccccchhhHHHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQIN--APEAVICVIASQIAN--LGESIIGA---ALQEKPGFKWLNNDAVNIINISMGSILA 314 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~i~--~~~~~~~~laG~lGs--llDSlLGA---tlQ~k~G~~~L~Nd~VN~lstl~galla 314 (327)
.+.=++|+++++++..+..... .+.+-.....||+|. -+-|+.=. .+|++ + ...-..|.+.++.+++++
T Consensus 41 l~vNi~GsfllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~~l~~~~---~-~~~a~~y~~~s~~~gl~a 116 (128)
T PRK14202 41 FTVNLLGSFLIGFISELALSTTLVSPEARLLLVTGFCGGFTTFSSYMYEIAALLRDG---E-LFYASLYLAGSLVGGFVA 116 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHhcccccHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHHH
Confidence 3466789999998765543221 222333445688884 22222222 23332 1 223457888888888888
Q ss_pred HHHHHHHHhhc
Q 020374 315 VLMQQIVLQSL 325 (327)
Q Consensus 315 ~~~~~~~~~~~ 325 (327)
..+...+.+.|
T Consensus 117 ~~lG~~l~~~~ 127 (128)
T PRK14202 117 LYSGTLLAKLW 127 (128)
T ss_pred HHHHHHHHHhh
Confidence 77765544433
No 29
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=29.83 E-value=96 Score=26.87 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhhhhcchhh
Q 020374 104 PSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQ 146 (327)
Q Consensus 104 ~sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl~sS~~TK~k~~~ 146 (327)
....+++.++|+++|+-.| +.+++|-+-|-..-.+++..
T Consensus 8 ~~a~Ia~mVlGFi~fWPlG----la~Lay~iw~~rm~~~~~~~ 46 (115)
T PF11014_consen 8 KPAWIAAMVLGFIVFWPLG----LALLAYMIWGKRMFGFKRSC 46 (115)
T ss_pred chHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhccc
Confidence 3568899999999875443 35566666664554444433
No 30
>PF12188 STAT2_C: Signal transducer and activator of transcription 2 C terminal; InterPro: IPR022756 This region is found in the mammalian signal transducer and activation of transcription (STAT) 2 protein, and is approximately 60 amino acids in length. The family is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. There is a conserved DLP sequence motif. STATs are involved in transcriptional regulation and are the only regulators known to be modulated by tyrosine phosphorylation. STAT2 forms a trimeric complex with STAT1 and IRF-9 (Interferon Regulatory Factor 9), on activation of the cell by interferon, which is called ISGF3 (Interferon-stimulated gene factor 3). The C-terminal domain of STAT2 contains a nuclear export signal (NES) which allows export of STAT2 into the cytoplasm along with any complexed molecules. ; PDB: 2KA4_B.
Probab=29.55 E-value=16 Score=27.85 Aligned_cols=36 Identities=39% Similarity=0.564 Sum_probs=19.9
Q ss_pred CCCcccccccccCCCCCCCCCcccCC-CcccccccCC
Q 020374 11 PPVPALWFPHSLQKTPKFEFPIFRNP-NISNSTSNCN 46 (327)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 46 (327)
-|+|.-=.||.||.----+.-||||+ +|..|+-|-+
T Consensus 2 Q~~pEpDLP~DL~hlnteemeifrN~~~ieeImpngd 38 (56)
T PF12188_consen 2 QPVPEPDLPHDLQHLNTEEMEIFRNSMKIEEIMPNGD 38 (56)
T ss_dssp ---------HHHHTS--TGGGGGTTS--TTTSS-SS-
T ss_pred CCCCCCCccHHHHHhChHHHHHHhccccHhhhccCCC
Confidence 45666668999999988899999999 8888887654
No 31
>PRK14228 camphor resistance protein CrcB; Provisional
Probab=29.25 E-value=3.5e+02 Score=23.06 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=41.2
Q ss_pred hHH-HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHH
Q 020374 240 EGT-FAGIFASILLAWVGCLTGQINAPEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGS 311 (327)
Q Consensus 240 lGt-lAsllGs~lIa~~a~ll~~i~~~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~ga 311 (327)
.|| ..=+.|+++++++..+. . .+.+-.....||+|. ..|++ ..+|.+ +| ..-..|++.+++++
T Consensus 38 ~gTl~vNi~G~fllG~~~~~~--~-~~~~~~~l~tGf~GgfTTFSTf~~e~~--~l~~~~---~~-~~a~~y~~~s~~~g 108 (122)
T PRK14228 38 YGTLAVNVSGAALLGFLAGLA--L-PKDAALLAGTAFVGAYTTFSTWMLETQ--RLGEER---QM-RSALANIVVSVVLG 108 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--c-CHHHHHHHHHHHhcchhhHHHHHHHHH--HHHHCC---CH-HHHHHHHHHHHHHH
Confidence 344 46788999998776432 1 222333445688874 23433 233443 22 23456777777777
Q ss_pred HHHHHHHHH
Q 020374 312 ILAVLMQQI 320 (327)
Q Consensus 312 lla~~~~~~ 320 (327)
+++..+...
T Consensus 109 l~a~~lG~~ 117 (122)
T PRK14228 109 LAAALLGQW 117 (122)
T ss_pred HHHHHHHHH
Confidence 777766654
No 32
>COG4413 Utp Urea transporter [Amino acid transport and metabolism]
Probab=29.13 E-value=91 Score=30.95 Aligned_cols=136 Identities=17% Similarity=0.118 Sum_probs=66.2
Q ss_pred ccCccccc--ccchHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHhhccchhhhhhc--------ccCCceeEee---C
Q 020374 159 RRGPGSVI--GSSAAGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGK--------AYGKTTYLVT---T 225 (327)
Q Consensus 159 ~R~~~QVl--aNg~~a~~~all~~~~~~~~~~~~~~~l~fvas~Aaa~ADTwASEIG~--------ls~~~PrLIT---T 225 (327)
-|+..||+ .|=..+..|-+.... +. +.++..+.+-+..+-+.|.-|+- +++-.+.|+- +
T Consensus 14 LrgisQV~lqnnp~tGLf~liaifv--ga------~t~g~aa~~Gsvl~~~vAr~i~~s~~s~~~GlyGyN~vLvg~al~ 85 (319)
T COG4413 14 LRGISQVFLQNNPLTGLFFLIAIFV--GA------PTLGAAAALGSVLGPLVARLIHCSDSSIRAGLYGYNGVLVGAALP 85 (319)
T ss_pred HcccceEEEeCCcchHHHHHHHHHH--cC------cchhHHHHHHhHHHHHHHHHHHhhHhHHHhccccccHHHHHHHHH
Confidence 58889998 676777665443222 11 22233334444555555554443 2344454442 3
Q ss_pred CeecCCCCCcccchhHHHHHHHHHHHHHHHHHHhhcCCc-----h----hHHHHHHHhhhHHHHHH-hhhhhhhccCCCc
Q 020374 226 FKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQINA-----P----EAVICVIASQIANLGES-IIGAALQEKPGFK 295 (327)
Q Consensus 226 ~k~VppGTnGgVSllGtlAsllGs~lIa~~a~ll~~i~~-----~----~~~~~~laG~lGsllDS-lLGAtlQ~k~G~~ 295 (327)
+.-.+++-.=.+..+|++.++.=...+ .-.+-..+. + .|+ .+++++.=..+|+ .+++.=|+.++-.
T Consensus 86 ~fla~sp~l~~i~vlg~lvSv~v~aav---~~ilr~~kvp~lT~pFVlttWf-lvllsyaf~~l~~s~l~llPq~~~~~~ 161 (319)
T COG4413 86 FFLAWSPGLWSIVVLGCLVSVAVQAAV---LHILRTWKVPALTLPFVLTTWF-LVLLSYAFKFLDTSWLPLLPQAHGGCA 161 (319)
T ss_pred HHhcCCcceehHHHHHHHHHHHHHHHH---HHHhhhccCcccccchHHHHHH-HHHHHhhhcCCCCcccccCchhhhccc
Confidence 334444445556667776665433322 211211111 1 233 3333333334454 5888888865544
Q ss_pred cccchhhHHHH
Q 020374 296 WLNNDAVNIIN 306 (327)
Q Consensus 296 ~L~Nd~VN~ls 306 (327)
.-+|+..|++.
T Consensus 162 ~~~~s~~~~l~ 172 (319)
T COG4413 162 SCAWSGTAELA 172 (319)
T ss_pred ccCcchHHHHH
Confidence 55555566554
No 33
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=28.36 E-value=8.7e+02 Score=27.13 Aligned_cols=21 Identities=24% Similarity=-0.081 Sum_probs=13.6
Q ss_pred HHHhhhHHHHHHhhhhhhhcc
Q 020374 271 VIASQIANLGESIIGAALQEK 291 (327)
Q Consensus 271 ~laG~lGsllDSlLGAtlQ~k 291 (327)
++.|+.+.+.-..+-+.+|..
T Consensus 342 ~~~g~~~~~~~~~~~~~~~~~ 362 (1140)
T PRK06814 342 FGLAAAGGLYIVPLFAALQAW 362 (1140)
T ss_pred HHHHHHHHHhHHHHHHHHHhh
Confidence 455666666666677777773
No 34
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=27.71 E-value=1.2e+02 Score=28.56 Aligned_cols=95 Identities=26% Similarity=0.360 Sum_probs=47.7
Q ss_pred eeCCe---ecCCCCCcc----cch-hHHHHHHHHHHHHHHHHHHhhcCCc---hhHHHHHHHhh--hHHHHHHh-hhhhh
Q 020374 223 VTTFK---VVPRGTEGA----VSV-EGTFAGIFASILLAWVGCLTGQINA---PEAVICVIASQ--IANLGESI-IGAAL 288 (327)
Q Consensus 223 ITT~k---~VppGTnGg----VSl-lGtlAsllGs~lIa~~a~ll~~i~~---~~~~~~~laG~--lGsllDSl-LGAtl 288 (327)
||.|+ -|.|||+|- ||. -|.+.+++|+.==++++|.+..... ....-....|| +-..+.|+ +|-|+
T Consensus 115 iT~~~Qe~YVtpGTeGHGlPTV~FVSGiiGg~LGGiGGalvY~aL~~~~~t~~~gvA~m~AvG~FfiNAVlaSYNIGGTI 194 (230)
T COG4060 115 ITKWDQEAYVTPGTEGHGLPTVSFVSGIIGGLLGGIGGALVYYALYKVGLTMSAGVAGMLAVGFFFINAVLASYNIGGTI 194 (230)
T ss_pred CCCCcccceeCCCCCCCCCceeeeehhhhhhhhcCccchhhHHHHHHHhcccchHHHHHHHHHHHHhhhhhhhcccCcee
Confidence 56554 588999993 332 3455555554444455555533221 11122223342 23455565 78888
Q ss_pred hcc--CCCccccchhh-HHHHHHHHHHHHHHH
Q 020374 289 QEK--PGFKWLNNDAV-NIINISMGSILAVLM 317 (327)
Q Consensus 289 Q~k--~G~~~L~Nd~V-N~lstl~galla~~~ 317 (327)
|.- .-|+-+.|.+| .++.++..++++.++
T Consensus 195 EGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 195 EGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred ecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 761 11555777654 344555555555443
No 35
>PRK14217 camphor resistance protein CrcB; Provisional
Probab=27.22 E-value=3e+02 Score=23.95 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCCc-hhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLT-GQINA-PEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGSI 312 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll-~~i~~-~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~gal 312 (327)
.+.=++|+++++++..+. ...+. +.+-.....||+|. ..|++- .+|.+ +| -.-..|+..++++++
T Consensus 40 l~VNi~GsfllG~~~~~~~~~~~~~~~~~~~l~tGflGgfTTFSTf~~E~~~--l~~~~---~~-~~a~~y~~~s~~~gl 113 (134)
T PRK14217 40 LLVNTLGSFLAGFFLIVLVGRFSAEESFRLFLFTGFLGAFTTFSSFAAESLF--MFEQG---YW-FKLITNILVNNVGSL 113 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhchhccHHHHHHHHHH--HHHCC---CH-HHHHHHHHHHHHHHH
Confidence 347789999999877543 22222 23334456788884 345552 45543 12 123355666655555
Q ss_pred HHHHHH
Q 020374 313 LAVLMQ 318 (327)
Q Consensus 313 la~~~~ 318 (327)
++..+.
T Consensus 114 ~a~~lG 119 (134)
T PRK14217 114 SMVFIG 119 (134)
T ss_pred HHHHHH
Confidence 555443
No 36
>PRK14224 camphor resistance protein CrcB; Provisional
Probab=26.35 E-value=3.7e+02 Score=23.19 Aligned_cols=76 Identities=13% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHH-HHHHHHHHHHHHHHHhhcCC--chhHHHHHHHhhhHHH--HHHhhhhhhhccCCCccccchhhHHHHHHHHHHHHH
Q 020374 241 GTF-AGIFASILLAWVGCLTGQIN--APEAVICVIASQIANL--GESIIGAALQEKPGFKWLNNDAVNIINISMGSILAV 315 (327)
Q Consensus 241 Gtl-AsllGs~lIa~~a~ll~~i~--~~~~~~~~laG~lGsl--lDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~galla~ 315 (327)
||+ .=++|+++++++..+..... .+.+-.....||+|.+ +-++-=-++|-. ..+-..|+..+++.++++.
T Consensus 37 gTl~vNi~G~fllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~E~~~l~-----~~~a~~y~~~s~~~gl~a~ 111 (126)
T PRK14224 37 GTLSVNVLGSFMLGMIMYDTEYIGFIGPKGRLAFGTGFLGAFTTFSTFAVQSFSMP-----FVPALGNISANLFLTLTGV 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhchhccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 444 66889999998765443211 2223334467888842 222222222221 1233456666666666666
Q ss_pred HHHHHH
Q 020374 316 LMQQIV 321 (327)
Q Consensus 316 ~~~~~~ 321 (327)
.+.+.+
T Consensus 112 ~~G~~l 117 (126)
T PRK14224 112 FFGRSL 117 (126)
T ss_pred HHHHHH
Confidence 555443
No 37
>PRK14225 camphor resistance protein CrcB; Provisional
Probab=26.17 E-value=3.1e+02 Score=23.90 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhhc---CCc-hhHHHHHHHhhhHH--HHHHhhhh---hhhccCCCccccchhhHHHHHHHHHHH
Q 020374 243 FAGIFASILLAWVGCLTGQ---INA-PEAVICVIASQIAN--LGESIIGA---ALQEKPGFKWLNNDAVNIINISMGSIL 313 (327)
Q Consensus 243 lAsllGs~lIa~~a~ll~~---i~~-~~~~~~~laG~lGs--llDSlLGA---tlQ~k~G~~~L~Nd~VN~lstl~gall 313 (327)
+.=++|+++++++..+... ... +.+-..+..||+|. -+-|+-=. .+|.+ +| ..-..|++.+++++++
T Consensus 48 ~VNi~GsfllG~l~~~~~~~~~~~~~~~~~~~l~tGflGgfTTFSTfs~E~~~L~~~~---~~-~~a~~y~~~s~~~gl~ 123 (137)
T PRK14225 48 FVNIVGSFIIMFFATLTGPEGRWLVSPAWRQFVMGGLCGGLTTFSSMSLDTFLLVLHG---NA-AFALAYLCGLVFLSLS 123 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHhchhccHHHHHHHHHHHHHCC---CH-HHHHHHHHHHHHHHHH
Confidence 4678899999987654321 111 22333445688873 22222222 23332 22 2345677777777777
Q ss_pred HHHHHHHH
Q 020374 314 AVLMQQIV 321 (327)
Q Consensus 314 a~~~~~~~ 321 (327)
+..+...+
T Consensus 124 a~~lG~~l 131 (137)
T PRK14225 124 AAMLGLIA 131 (137)
T ss_pred HHHHHHHH
Confidence 76665543
No 38
>PRK14218 camphor resistance protein CrcB; Provisional
Probab=26.11 E-value=4e+02 Score=23.17 Aligned_cols=78 Identities=9% Similarity=0.006 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcC--CchhHHHHHHHhhhHH--HHHHhhhhhhhc-cCCCccccchhhHHHHHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQI--NAPEAVICVIASQIAN--LGESIIGAALQE-KPGFKWLNNDAVNIINISMGSILAVL 316 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~i--~~~~~~~~~laG~lGs--llDSlLGAtlQ~-k~G~~~L~Nd~VN~lstl~galla~~ 316 (327)
.+.=++|+++++++..+.... ..+.+-..+..||+|. -+-++-=.++|- ++| ++ -.-..|+..++++++++..
T Consensus 44 l~VNv~GsfllG~l~~~~~~~~~~~~~~~~~l~tGflGgfTTFSTf~~E~~~L~~~~-~~-~~a~~y~~~s~~~gl~a~~ 121 (133)
T PRK14218 44 LAVNLIGSFVAGFLLIWLDKRGSAGWPWRMLLIVGLIGGLTTFSSLMMECLVFVRSD-RS-LMVGIYLCITLLFGLLFVF 121 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhchhccHHHHHHHHHHHHHCC-CH-HHHHHHHHHHHHHHHHHHH
Confidence 456688999999876554321 1222334456788884 222322222222 111 11 2334677777777777766
Q ss_pred HHHHH
Q 020374 317 MQQIV 321 (327)
Q Consensus 317 ~~~~~ 321 (327)
+...+
T Consensus 122 lG~~l 126 (133)
T PRK14218 122 LGARL 126 (133)
T ss_pred HHHHH
Confidence 65543
No 39
>PRK14195 camphor resistance protein CrcB; Provisional
Probab=25.72 E-value=3.7e+02 Score=22.89 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CC-chhHHHHHHHhhhHH--HHHHhhhhhhhccCCCccccchhhHHHHHHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQ-IN-APEAVICVIASQIAN--LGESIIGAALQEKPGFKWLNNDAVNIINISMGSILAVLM 317 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~-i~-~~~~~~~~laG~lGs--llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~galla~~~ 317 (327)
...=++|+++++++..+... .. .+.+......||+|. -+-++.=.++|--+.-+| ..-..|.+.+++.++++..+
T Consensus 38 l~vNi~GsfllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~~l~~~~~~-~~a~~y~~~s~~~gl~a~~l 116 (125)
T PRK14195 38 LAVNVTGSFLIGVLAGLLAHRWNASQEWRLFLIVGVLGGFTTFSAFSLDAALLIERGAY-GAAAAYIAASVVLSVAALFA 116 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhHhccCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 34678899999987654322 11 222333456788884 233333333332100112 23356777777777777666
Q ss_pred HHHH
Q 020374 318 QQIV 321 (327)
Q Consensus 318 ~~~~ 321 (327)
...+
T Consensus 117 G~~l 120 (125)
T PRK14195 117 GLAI 120 (125)
T ss_pred HHHH
Confidence 5543
No 40
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.24 E-value=1.2e+02 Score=26.24 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhhhhcchh----hhhhhhhhhhcCCccC
Q 020374 105 SGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMA----QKEAQGVAEKRKGRRG 161 (327)
Q Consensus 105 sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl~sS~~TK~k~~----~K~~l~~~~k~~G~R~ 161 (327)
+|.+.+..+|+++=..+|-.+|. |++|.++|-.+--..-. .+++.+..++.+|+++
T Consensus 54 sGilVGa~iG~llD~~agTsPwg-lIv~lllGf~AG~lnv~Rsag~va~~~~~~~~s~~~d 113 (116)
T COG5336 54 SGILVGAGIGWLLDKFAGTSPWG-LIVFLLLGFGAGVLNVLRSAGKVAEQGQAPKSSGNDD 113 (116)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHhccccccccCCCCCcccc
Confidence 56667777777664445554442 34555555443333332 2333344444444443
No 41
>PRK14208 camphor resistance protein CrcB; Provisional
Probab=23.99 E-value=3.3e+02 Score=23.39 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-Cc-hhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQI-NA-PEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGSI 312 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~i-~~-~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~gal 312 (327)
.+.=++|+++++++..+.... .. +.+-.....||+|. ..|++- .+|++ + .-.-..|...++.+++
T Consensus 38 l~vNi~GsfllG~~~~~~~~~~~~~~~~~~~l~tGflGgfTTFSTf~~e~~~--l~~~~---~-~~~a~~y~~~s~~~gl 111 (126)
T PRK14208 38 LLVNVSGSFLLAGIMTASLQSEAVPPDLRLFLAAGVMGGFTTYSSFNYETLA--LLEQG---R-LAAAAAYLLATVLGCL 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhcchhhHHHHHHHHHH--HHHCC---C-HHHHHHHHHHHHHHHH
Confidence 347788999999876554322 12 22334456788884 234332 33332 1 2234567777777777
Q ss_pred HHHHHHHH
Q 020374 313 LAVLMQQI 320 (327)
Q Consensus 313 la~~~~~~ 320 (327)
++..+...
T Consensus 112 ~a~~lG~~ 119 (126)
T PRK14208 112 AAAFAATL 119 (126)
T ss_pred HHHHHHHH
Confidence 77666544
No 42
>PRK14198 camphor resistance protein CrcB; Provisional
Probab=23.93 E-value=4.5e+02 Score=22.44 Aligned_cols=73 Identities=5% Similarity=0.046 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-C-chhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQI-N-APEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGSI 312 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~i-~-~~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~gal 312 (327)
.+.=++|+++++++..+.... . .+.+-.....||+|. ..|++ ..+|.+ + .-.-..|++.++++++
T Consensus 37 l~vN~~GsfllG~l~~~~~~~~~~~~~~~~~l~tGflGgfTTFSTf~~e~~--~l~~~~---~-~~~a~~y~~~s~~~gl 110 (124)
T PRK14198 37 FIINVSGSLVMGLIAGYLAFKGGAPQHWRLFLMTGILGGYTTFSAFSLDAA--LLYERG---A-LGLAALYVLGSVALGI 110 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhcccccHHHHHHHHH--HHHHCC---C-HHHHHHHHHHHHHHHH
Confidence 346788999999877554321 1 122333446688883 23333 233432 1 2344578888888888
Q ss_pred HHHHHHHH
Q 020374 313 LAVLMQQI 320 (327)
Q Consensus 313 la~~~~~~ 320 (327)
++..+...
T Consensus 111 ~a~~lG~~ 118 (124)
T PRK14198 111 AGLFAGLA 118 (124)
T ss_pred HHHHHHHH
Confidence 87776654
No 43
>PRK14209 camphor resistance protein CrcB; Provisional
Probab=23.83 E-value=4.7e+02 Score=22.46 Aligned_cols=83 Identities=10% Similarity=0.046 Sum_probs=45.1
Q ss_pred hHH-HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHhhhHH--HHHHhhhhhhhc-cCCCccccchhhHHHHHHHHHHHHH
Q 020374 240 EGT-FAGIFASILLAWVGCLTGQINAPEAVICVIASQIAN--LGESIIGAALQE-KPGFKWLNNDAVNIINISMGSILAV 315 (327)
Q Consensus 240 lGt-lAsllGs~lIa~~a~ll~~i~~~~~~~~~laG~lGs--llDSlLGAtlQ~-k~G~~~L~Nd~VN~lstl~galla~ 315 (327)
.|| ..=++|+++++++..+.... .+.+-..+..||+|. -+-|+-=.++|- ++| + ...-..|.+.++..++++.
T Consensus 36 ~~Tl~vNi~GsfllG~~~~~~~~~-~~~~~~~l~tGf~GgfTTFSTf~~e~~~l~~~~-~-~~~a~~y~~~s~~~gl~a~ 112 (124)
T PRK14209 36 VGTMIVNVVGSFLMGVLVVVLAHK-GNRYAPFLMTGMLGGFTTFSAFSLDAVTLYERG-Q-AGLAAAYVGLSVGLSLAGL 112 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHcccchhHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHHHHHHHH
Confidence 344 46788999999876544322 223333445788883 233333333332 111 1 2234577777777777777
Q ss_pred HHHHHHHhhc
Q 020374 316 LMQQIVLQSL 325 (327)
Q Consensus 316 ~~~~~~~~~~ 325 (327)
.+...+.+.|
T Consensus 113 ~lG~~l~~~~ 122 (124)
T PRK14209 113 MAGMAAVRGW 122 (124)
T ss_pred HHHHHHHHHH
Confidence 7665544433
No 44
>PRK14200 camphor resistance protein CrcB; Provisional
Probab=23.41 E-value=4.8e+02 Score=22.47 Aligned_cols=73 Identities=8% Similarity=-0.006 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--chhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHHHH
Q 020374 243 FAGIFASILLAWVGCLTGQIN--APEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGSIL 313 (327)
Q Consensus 243 lAsllGs~lIa~~a~ll~~i~--~~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~gall 313 (327)
+.=++|+++++++........ .+.+-.....||+|. ..|++ ..+|++ +| ..-..|...++.++++
T Consensus 42 ~VN~~GsfllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~E~~--~l~~~~---~~-~~a~~y~~~s~~~gl~ 115 (127)
T PRK14200 42 TVNVVGSFIMGLLIAAFENELLATEPWRQIIGLGFLGALTTFSTFSMDNV--LLMQQG---AF-FKMGLNVLLNVVLSIS 115 (127)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhccchhHHHHHHHHH--HHHHCC---CH-HHHHHHHHHHHHHHHH
Confidence 466889999998775543221 222333445788883 23333 234443 22 2345788888888888
Q ss_pred HHHHHHHH
Q 020374 314 AVLMQQIV 321 (327)
Q Consensus 314 a~~~~~~~ 321 (327)
+..+...+
T Consensus 116 a~~lG~~l 123 (127)
T PRK14200 116 AAWIGFQL 123 (127)
T ss_pred HHHHHHHH
Confidence 77765543
No 45
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=23.25 E-value=3.7e+02 Score=23.15 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-Cc-hhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQI-NA-PEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGSI 312 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~i-~~-~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~gal 312 (327)
.+.=++|+++++++..+.... .. +.+-.....||+|. ..|++- .+|.+ +| -.-..|++.++++++
T Consensus 34 l~vNi~GsfllG~l~~~~~~~~~~~~~~~~~l~tGflGgfTTFSTf~~e~~~--l~~~~---~~-~~a~~y~~~s~~~gl 107 (129)
T PRK14231 34 LAVNLIGCFLLAFLMQFLAEKSRISLVILNGIGTGFIGAFTTFSAFSVDTIQ--LVQSG---AW-LLAVSYVLASFIGGL 107 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhHHhcccccHHHHHHHHHH--HHHCC---CH-HHHHHHHHHHHHHHH
Confidence 355688999999876554321 11 22333445688884 344442 33332 12 123456666666666
Q ss_pred HHHHHHH
Q 020374 313 LAVLMQQ 319 (327)
Q Consensus 313 la~~~~~ 319 (327)
++..+..
T Consensus 108 ~a~~lG~ 114 (129)
T PRK14231 108 IMVKFGR 114 (129)
T ss_pred HHHHHHH
Confidence 5554443
No 46
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=23.12 E-value=2.3e+02 Score=29.66 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=18.9
Q ss_pred hhhhhcCCChhHHHHHHHHHHHH
Q 020374 95 SPILVSGLSPSGIAAAFLLGTLT 117 (327)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~ 117 (327)
.++.-|..|..|++++.++|.+.
T Consensus 449 lgl~Wkr~n~~GA~ag~i~G~~~ 471 (549)
T TIGR02711 449 LSMYWSKLTTRGAMIGGWLGLIT 471 (549)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 45556789999999999999754
No 47
>PRK14234 camphor resistance protein CrcB; Provisional
Probab=22.75 E-value=4.8e+02 Score=22.22 Aligned_cols=72 Identities=13% Similarity=-0.004 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhcC-C-chhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHHHH
Q 020374 243 FAGIFASILLAWVGCLTGQI-N-APEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGSIL 313 (327)
Q Consensus 243 lAsllGs~lIa~~a~ll~~i-~-~~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~gall 313 (327)
..=++|+++++++..+.... . .+.+-.....||+|. ..|++ ..+|++ +| -.-..|++.+..++++
T Consensus 40 ~vNi~G~fllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~--~l~~~~---~~-~~a~~y~~~s~~~gl~ 113 (124)
T PRK14234 40 AVNIVGCLLIGLLYGLFLLRPEVPIELRAGLIVGFLGGLTTFSSFSLDTL--RLLESG---QV-PLALGYAGISVFGGLL 113 (124)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHccccchHHHHHHHHH--HHHHCC---CH-HHHHHHHHHHHHHHHH
Confidence 46678999999876544321 1 223334556788884 23443 233433 22 2445677777777777
Q ss_pred HHHHHHH
Q 020374 314 AVLMQQI 320 (327)
Q Consensus 314 a~~~~~~ 320 (327)
+..+...
T Consensus 114 a~~~G~~ 120 (124)
T PRK14234 114 ATWAGLS 120 (124)
T ss_pred HHHHHHH
Confidence 6665543
No 48
>PRK14199 camphor resistance protein CrcB; Provisional
Probab=22.64 E-value=3.5e+02 Score=23.27 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-Cc-hhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQI-NA-PEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGSI 312 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~i-~~-~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~gal 312 (327)
.+.=+.|+++++++..+.... +. +.+-..+..||+|. ..|++ ..+|++ + ...-..|...++.+++
T Consensus 41 l~VNi~GsfllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~E~~--~l~~~~---~-~~~a~~y~~~s~~~gl 114 (128)
T PRK14199 41 LIVNIVGALLIGFIMEFSMDTALISSNMKLFLTTGIMGGLTTFSTFSYETI--NLITNG---N-ILLGIENIILNLGLSL 114 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHhHHhcccccHHHHHHHHH--HHHHCC---C-HHHHHHHHHHHHHHHH
Confidence 346788999999876554322 12 22333446788884 23333 223332 1 1233456666777777
Q ss_pred HHHHHHHH
Q 020374 313 LAVLMQQI 320 (327)
Q Consensus 313 la~~~~~~ 320 (327)
++..+...
T Consensus 115 ~a~~lG~~ 122 (128)
T PRK14199 115 LGVVIGQK 122 (128)
T ss_pred HHHHHHHH
Confidence 66666543
No 49
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=22.10 E-value=2e+02 Score=28.56 Aligned_cols=56 Identities=20% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHhhhhhh-cCCChhHHHHHHHHHHHHHHhhchhh----------HHHHHHHHHhhhhhhhcchh
Q 020374 90 IFVLGSPILV-SGLSPSGIAAAFLLGTLTWRAFGPSG----------FLLVATYFIIGTAATKVKMA 145 (327)
Q Consensus 90 ~~~a~~~~~~-ksLT~sGa~aA~lvG~l~~~~~G~~g----------f~lLl~FFl~sS~~TK~k~~ 145 (327)
.+.|..++|. |.+-.+|+..|..+-++.-..+||.. ++.-..|++-|-+..|-+.+
T Consensus 87 fiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~ 153 (294)
T KOG2881|consen 87 FIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWE 153 (294)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556554 44556999999999887766777743 23445567777777666543
No 50
>PRK14206 camphor resistance protein CrcB; Provisional
Probab=21.84 E-value=5.1e+02 Score=22.14 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhcC----CchhHHHHHHHhhhHH-------HHHHhhhhhhhccCCCccccchhhHHHHHHHHH
Q 020374 243 FAGIFASILLAWVGCLTGQI----NAPEAVICVIASQIAN-------LGESIIGAALQEKPGFKWLNNDAVNIINISMGS 311 (327)
Q Consensus 243 lAsllGs~lIa~~a~ll~~i----~~~~~~~~~laG~lGs-------llDSlLGAtlQ~k~G~~~L~Nd~VN~lstl~ga 311 (327)
.+=++|+++++++....... ..+.+-.....||+|. ..|++- .+|.+ +|. .-..|++.++.++
T Consensus 38 ~vNi~GsfllG~~~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~~--l~~~~---~~~-~a~~y~~~s~~~g 111 (127)
T PRK14206 38 VINVSGSFLIGFFATLTGPEGRVFVGESWRLFVMVGVCGGFTTFSSFSLQTLN--LARDG---DWL-RAGGNVVLSVVFC 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHccccccHHHHHHHHHH--HHHCC---CHH-HHHHHHHHHHHHH
Confidence 46688999999876544221 1122334456788884 345542 44443 222 3346777777777
Q ss_pred HHHHHHHHHHH
Q 020374 312 ILAVLMQQIVL 322 (327)
Q Consensus 312 lla~~~~~~~~ 322 (327)
+++..+...+-
T Consensus 112 l~a~~~G~~~~ 122 (127)
T PRK14206 112 LLAVWLGHVAA 122 (127)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 51
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=21.80 E-value=5.1e+02 Score=22.10 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHhhhHH--HHHHhhhh---hhhccCCCccccchhhHHHHHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQINAPEAVICVIASQIAN--LGESIIGA---ALQEKPGFKWLNNDAVNIINISMGSILAVL 316 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~i~~~~~~~~~laG~lGs--llDSlLGA---tlQ~k~G~~~L~Nd~VN~lstl~galla~~ 316 (327)
.+.=+.|+++++++.... ..+.+-.....||+|. -+-|+-=. .+|.+ +| .+-..|.+.++++++++..
T Consensus 37 l~VNi~GsfllG~~~~~~---~~~~~~~~l~tGflGgfTTFSTf~~e~~~l~~~~---~~-~~a~~y~~~s~~~gl~a~~ 109 (119)
T PRK14230 37 LFANWTGALLIGIFAETV---NHPQWKLLLITGFLGSLTTLSGFSLETVTLLQSN---RP-ASALANIFLHTAGSLLLTW 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHhchHhhHHHHHHHHHHHHHCC---CH-HHHHHHHHHHHHHHHHHHH
Confidence 456788999999776442 2233333445788884 22233222 23332 22 3345788888888888777
Q ss_pred HHHHH
Q 020374 317 MQQIV 321 (327)
Q Consensus 317 ~~~~~ 321 (327)
+.+.+
T Consensus 110 lG~~l 114 (119)
T PRK14230 110 LGLKI 114 (119)
T ss_pred HHHHH
Confidence 76543
No 52
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=21.79 E-value=5.7e+02 Score=22.67 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=32.2
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhh--hhcchhhhhhhhhhhhcCCccCcccccc
Q 020374 97 ILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAA--TKVKMAQKEAQGVAEKRKGRRGPGSVIG 167 (327)
Q Consensus 97 ~~~ksLT~sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl~sS~~--TK~k~~~K~~l~~~~k~~G~R~~~QVla 167 (327)
.+++.==+-|.+...+-+.+-+ ..|..+-..+=.||+..+.. -+++++++++.+..-++-.+|++..++.
T Consensus 20 k~~~~~~~~giis~~~y~~i~~-~~~ly~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~~~~~~~~~~ 91 (181)
T PF04973_consen 20 KGNIWNWPFGIISSLLYAYIFY-QAGLYGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLSKKQWILLLI 91 (181)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCCHHHHHHHHH
Confidence 3333444566666666666544 23443444555566555553 3444222222222223334555544443
No 53
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=21.79 E-value=3.7e+02 Score=22.36 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=8.2
Q ss_pred chhhhhhhhhhhhc
Q 020374 143 KMAQKEAQGVAEKR 156 (327)
Q Consensus 143 k~~~K~~l~~~~k~ 156 (327)
+++..|..+.++++
T Consensus 24 g~~W~~~~g~~~~~ 37 (126)
T PF08570_consen 24 GKAWMRAMGITPED 37 (126)
T ss_pred HHHHHHHcCCCccc
Confidence 66666666555443
No 54
>PRK14203 camphor resistance protein CrcB; Provisional
Probab=21.37 E-value=5.3e+02 Score=22.24 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc-C---CchhHHHHHHHhhhHH--HHHHhhhh---hhhccCCCccccchhhHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQ-I---NAPEAVICVIASQIAN--LGESIIGA---ALQEKPGFKWLNNDAVNIINISMGSI 312 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~-i---~~~~~~~~~laG~lGs--llDSlLGA---tlQ~k~G~~~L~Nd~VN~lstl~gal 312 (327)
.+.=++|+++++++..+... . ..+........||+|. -+-|+-=. .+|++ +| ..-..|...++++++
T Consensus 42 l~VNi~GsfllG~l~~~~~~~~~~~~~~~~~l~l~tGflGgfTTFSTf~~e~~~l~~~~---~~-~~a~~y~~~s~~~gl 117 (132)
T PRK14203 42 LTVNVSGAFAIGIFGALAASGHGLFALPAPWLFAVTGFLGCYTTVSSFSLQTLTLARDG---EF-LRALGNVAFSLILCL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHhchhccHHHHHHHHHHHHHCC---CH-HHHHHHHHHHHHHHH
Confidence 34678899999987655432 1 1222333446788884 22222222 33332 22 234567777777777
Q ss_pred HHHHHHHH
Q 020374 313 LAVLMQQI 320 (327)
Q Consensus 313 la~~~~~~ 320 (327)
++..+...
T Consensus 118 ~a~~lG~~ 125 (132)
T PRK14203 118 IAVAIGFA 125 (132)
T ss_pred HHHHHHHH
Confidence 77666544
No 55
>COG4854 Predicted membrane protein [Function unknown]
Probab=20.84 E-value=4.6e+02 Score=23.02 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHH-HHhhchhhHHHHHHHHHhhhhhhhcchhhhhhhhhhh-----hcCCccCcccccccchH
Q 020374 104 PSGIAAAFLLGTLT-WRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAE-----KRKGRRGPGSVIGSSAA 171 (327)
Q Consensus 104 ~sGa~aA~lvG~l~-~~~~G~~gf~lLl~FFl~sS~~TK~k~~~K~~l~~~~-----k~~G~R~~~QVlaNg~~ 171 (327)
.-+.....++|... |..-...|++.++.||.---.+.-+|++..+-.+++. ++..+| -.||+.-|..
T Consensus 9 ~~l~~ivm~~GA~~g~a~~sGn~~iav~af~ag~~~l~l~k~Rv~~vvEDER~lrvse~aSr~-TiqV~~is~A 81 (126)
T COG4854 9 KILFAIVMAVGAAVGYAVESGNWFIAVIAFFAGAALLSLVKRRVDEVVEDERTLRVSERASRR-TIQVFSISAA 81 (126)
T ss_pred HHHHHHHHHHHHHHheeecCCCeehHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhe-eEEEEEehHH
Confidence 34444455555433 2222234688888998777777777766554433322 233445 5699987743
No 56
>PHA02723 hypothetical protein; Provisional
Probab=20.73 E-value=22 Score=28.05 Aligned_cols=13 Identities=54% Similarity=0.542 Sum_probs=10.8
Q ss_pred CccccchhhHHHH
Q 020374 294 FKWLNNDAVNIIN 306 (327)
Q Consensus 294 ~~~L~Nd~VN~ls 306 (327)
-++|+||.|||+.
T Consensus 40 ndilnn~ivnfim 52 (77)
T PHA02723 40 NDILNNDIVNFIM 52 (77)
T ss_pred chhhcccceeeeE
Confidence 3689999999974
No 57
>PRK14216 camphor resistance protein CrcB; Provisional
Probab=20.37 E-value=5.2e+02 Score=22.36 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CC-chhHHHHHHHhhhHHH--HHHhhhh---hhhccCCCccccchhhHHHHHHHHHHHH
Q 020374 242 TFAGIFASILLAWVGCLTGQ-IN-APEAVICVIASQIANL--GESIIGA---ALQEKPGFKWLNNDAVNIINISMGSILA 314 (327)
Q Consensus 242 tlAsllGs~lIa~~a~ll~~-i~-~~~~~~~~laG~lGsl--lDSlLGA---tlQ~k~G~~~L~Nd~VN~lstl~galla 314 (327)
.+.=++|+++++++..+... .. .+.+-..+..||+|.+ +-++-=- .+|++ +| ..-..|++.+++.++++
T Consensus 42 l~vNv~GsfllG~~~~~~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~E~~~l~~~~---~~-~~a~~y~~~s~~~gl~a 117 (132)
T PRK14216 42 FTVNVVGAFLLGYFTTRLLERLPLSSYRRPLLGTGLCGGLTTFSTMQVETIRMIEHG---HW-GLAAGYTAASIAAGLLA 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhhccccchHHHHHHHHHHHHCC---CH-HHHHHHHHHHHHHHHHH
Confidence 34678899999987654322 11 1223334457888842 2222222 22322 12 23446677777666666
Q ss_pred HHHHHH
Q 020374 315 VLMQQI 320 (327)
Q Consensus 315 ~~~~~~ 320 (327)
..+...
T Consensus 118 ~~lG~~ 123 (132)
T PRK14216 118 VHLATV 123 (132)
T ss_pred HHHHHH
Confidence 665544
Done!