Query 020374
Match_columns 327
No_of_seqs 177 out of 433
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 84.3 2.3 7.7E-05 42.4 7.7 58 95-152 415-484 (530)
2 2xq2_A Sodium/glucose cotransp 73.6 12 0.00041 37.7 9.1 51 95-145 444-506 (593)
3 2ka4_B P113, signal transducer 43.5 9.1 0.00031 28.0 1.4 37 10-46 2-39 (57)
4 2k1k_A Ephrin type-A receptor 35.2 62 0.0021 21.6 4.5 17 100-117 6-22 (38)
5 2l34_A TYRO protein tyrosine k 23.6 97 0.0033 20.1 3.7 25 105-134 6-30 (33)
6 3l1l_A Arginine/agmatine antip 13.6 4.7E+02 0.016 23.9 7.4 22 121-142 405-426 (445)
7 2knc_B Integrin beta-3; transm 12.2 4.5E+02 0.015 19.8 5.7 16 103-118 9-24 (79)
8 1kvd_A SMK toxin; halotolerant 10.1 1.2E+02 0.0042 22.0 1.6 31 229-259 15-45 (63)
9 2fyf_A PSAT, phosphoserine ami 8.8 1.3E+02 0.0045 27.2 1.8 22 21-42 24-45 (398)
10 2kxa_A Haemagglutinin HA2 chai 7.1 2.4E+02 0.0083 18.1 1.9 21 105-125 3-23 (30)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=84.33 E-value=2.3 Score=42.41 Aligned_cols=58 Identities=7% Similarity=0.006 Sum_probs=37.2
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhh---c--h-------hhHHHHHHHHHhhhhhhhcchhhhhhhhh
Q 020374 95 SPILVSGLSPSGIAAAFLLGTLTWRAF---G--P-------SGFLLVATYFIIGTAATKVKMAQKEAQGV 152 (327)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~~~~~---G--~-------~gf~lLl~FFl~sS~~TK~k~~~K~~l~~ 152 (327)
.++.-|..|..|++++.++|.+++... . + .++.+-+..++..|++||-+.+++++.+.
T Consensus 415 lgl~wkr~~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~vSl~t~~~~~~~~~~~~ 484 (530)
T 3dh4_A 415 LGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISV 484 (530)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCSSSSCTTCCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccc
Confidence 455567799999999999998654221 1 1 12333344567778888877665544433
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=73.55 E-value=12 Score=37.70 Aligned_cols=51 Identities=6% Similarity=-0.016 Sum_probs=31.9
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhc-----h-------hhHHHHHHHHHhhhhhhhcchh
Q 020374 95 SPILVSGLSPSGIAAAFLLGTLTWRAFG-----P-------SGFLLVATYFIIGTAATKVKMA 145 (327)
Q Consensus 95 ~~~~~ksLT~sGa~aA~lvG~l~~~~~G-----~-------~gf~lLl~FFl~sS~~TK~k~~ 145 (327)
.++.-|..|..|++++.++|.+.+...- . .++.+-+..++..|++||-+.+
T Consensus 444 lglfwkr~~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~v~vSl~t~~~~~ 506 (593)
T 2xq2_A 444 LGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDD 506 (593)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhheeecCCCch
Confidence 4455677999999999999987643210 1 1122223345677888875544
No 3
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=43.53 E-value=9.1 Score=28.05 Aligned_cols=37 Identities=32% Similarity=0.423 Sum_probs=31.4
Q ss_pred CCCCcccccccccCCCCCCCCCcccCC-CcccccccCC
Q 020374 10 SPPVPALWFPHSLQKTPKFEFPIFRNP-NISNSTSNCN 46 (327)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 46 (327)
|-|+|.-=.||.||..-.-+.-+|||+ +|..++-|-+
T Consensus 2 ~~~~~EpDLP~DL~~lnte~meifrN~~~ieeImpngd 39 (57)
T 2ka4_B 2 SHMVPEPDLPHDLRHLNTEPMEIFRNSVKIEEIMPNGD 39 (57)
T ss_dssp CSSCCCCCCCHHHHTSCCTGGGGGTTSCCTTTSSCSSC
T ss_pred CCCCCCCCccHHHHHhChHHHHHHhccccHhhcccCCC
Confidence 456777778999999988899999999 9999987655
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=35.21 E-value=62 Score=21.60 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=13.2
Q ss_pred cCCChhHHHHHHHHHHHH
Q 020374 100 SGLSPSGIAAAFLLGTLT 117 (327)
Q Consensus 100 ksLT~sGa~aA~lvG~l~ 117 (327)
+.|+ .|+++++++|.+.
T Consensus 6 ~~ls-~GaIAGiVvG~v~ 22 (38)
T 2k1k_A 6 RGLT-GGEIVAVIFGLLL 22 (38)
T ss_dssp TTCC-HHHHHHHHHHHHH
T ss_pred CCCC-CCceeeeehHHHH
Confidence 4566 8899999999864
No 5
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=23.61 E-value=97 Score=20.15 Aligned_cols=25 Identities=28% Similarity=0.688 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 020374 105 SGIAAAFLLGTLTWRAFGPSGFLLVATYFI 134 (327)
Q Consensus 105 sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl 134 (327)
.|+++++++|-+.... ++.+++||+
T Consensus 6 ~gaIaGIVvgdi~~t~-----~i~~~vy~~ 30 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTV-----LIALAVYFL 30 (33)
T ss_dssp THHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred cceEEeEeHHHHHHHH-----HHHHHHhhe
Confidence 5888899988866421 334555553
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=13.63 E-value=4.7e+02 Score=23.88 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=9.6
Q ss_pred hchhhHHHHHHHHHhhhhhhhc
Q 020374 121 FGPSGFLLVATYFIIGTAATKV 142 (327)
Q Consensus 121 ~G~~gf~lLl~FFl~sS~~TK~ 142 (327)
.++..+...+.+.+.|..+-.+
T Consensus 405 ~~~~~~~~~~~~~~~g~~~y~~ 426 (445)
T 3l1l_A 405 SGAKEVMWSFVTLMVITAMYAL 426 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 4444343344444555444333
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.22 E-value=4.5e+02 Score=19.83 Aligned_cols=16 Identities=6% Similarity=-0.130 Sum_probs=8.8
Q ss_pred ChhHHHHHHHHHHHHH
Q 020374 103 SPSGIAAAFLLGTLTW 118 (327)
Q Consensus 103 T~sGa~aA~lvG~l~~ 118 (327)
+..+++.+++.|++..
T Consensus 9 n~~~Iv~gvi~gilli 24 (79)
T 2knc_B 9 DILVVLLSVMGAILLI 24 (79)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHH
Confidence 4455666666665543
No 8
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=10.08 E-value=1.2e+02 Score=21.96 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=25.3
Q ss_pred cCCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 020374 229 VPRGTEGAVSVEGTFAGIFASILLAWVGCLT 259 (327)
Q Consensus 229 VppGTnGgVSllGtlAsllGs~lIa~~a~ll 259 (327)
.-.|-+|+-+.-|+..+++|.+.-++++.+.
T Consensus 15 aiagcsgaatfgglaggivgciaagilailq 45 (63)
T 1kvd_A 15 AIAGCSGAATFGGLAGGIVGCIAAGILAILQ 45 (63)
T ss_dssp CBCCCSSCCCCTTCCSHHHHHHHHHHHHHHH
T ss_pred HHhCCccchhcccccchHHHHHHHHHHHHHh
Confidence 3469999999999999999988877776553
No 9
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=8.84 E-value=1.3e+02 Score=27.24 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=11.6
Q ss_pred ccCCCCCCCCCcccCCCccccc
Q 020374 21 SLQKTPKFEFPIFRNPNISNST 42 (327)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~ 42 (327)
+-||||.|++|.=..|.+-|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~ 45 (398)
T 2fyf_A 24 ADQLTPHLEIPTAIKPRDGRFG 45 (398)
T ss_dssp ------CCCCCGGGSCSSCBCC
T ss_pred hhhcCcCcCCccccccCCcccc
Confidence 5689999999996666655543
No 10
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=7.14 E-value=2.4e+02 Score=18.09 Aligned_cols=21 Identities=33% Similarity=0.235 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHhhchhh
Q 020374 105 SGIAAAFLLGTLTWRAFGPSG 125 (327)
Q Consensus 105 sGa~aA~lvG~l~~~~~G~~g 125 (327)
-|++++++-|-..=..-||.+
T Consensus 3 FGAIAGfieggW~gmi~gwyG 23 (30)
T 2kxa_A 3 FGAIAGFIEGGWTGMIDGWYG 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhhhhhcCcccccccccc
Confidence 478888887765433344433
Done!