Query 020374
Match_columns 327
No_of_seqs 177 out of 433
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 15:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020374.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020374hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmec1 f.23.9.1 (C:2-34) Bact 11.9 1.5E+02 0.011 17.7 3.9 28 104-134 4-31 (33)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 9.9 29 0.0021 25.0 -0.0 43 102-145 4-46 (91)
3 d1iz6a1 b.34.5.2 (A:2-70) Euka 6.9 88 0.0064 21.2 1.6 22 215-236 18-39 (69)
4 d1bkba1 b.34.5.2 (A:4-74) Euka 6.4 90 0.0066 21.4 1.4 22 215-236 21-42 (71)
5 d2eifa1 b.34.5.2 (A:1-73) Euka 5.6 1.2E+02 0.0085 20.9 1.6 21 216-236 23-43 (73)
6 g1kve.1 d.70.1.2 (A:,B:) SMK t 5.1 1.6E+02 0.012 22.2 2.2 31 229-259 15-45 (140)
7 d2je8a1 b.1.4.1 (A:220-330) Be 4.9 1.1E+02 0.0081 21.4 1.1 13 12-24 73-85 (111)
8 d1q90r_ f.23.12.1 (R:) ISP sub 4.4 3.4E+02 0.025 16.8 3.1 21 239-259 17-37 (39)
9 d2vzsa1 b.1.4.1 (A:226-335) Ex 3.8 1.6E+02 0.012 20.6 1.3 12 13-24 72-83 (110)
10 d2pn2a1 d.227.1.1 (A:1-132) Un 3.6 4.8E+02 0.035 18.2 4.0 28 232-259 35-62 (132)
No 1
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=11.88 E-value=1.5e+02 Score=17.65 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 020374 104 PSGIAAAFLLGTLTWRAFGPSGFLLVATYFI 134 (327)
Q Consensus 104 ~sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl 134 (327)
|.|+++-+++=.+++..| |+-++.+||.
T Consensus 4 p~gal~vi~il~l~ilvf---w~gv~avf~a 31 (33)
T d1xmec1 4 PKGALAVILVLTLTILVF---WLGVYAVFFA 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH---HHHHHHHHhc
Confidence 556766655555444332 4455666664
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.92 E-value=29 Score=25.01 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=19.8
Q ss_pred CChhHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhhhhcchh
Q 020374 102 LSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMA 145 (327)
Q Consensus 102 LT~sGa~aA~lvG~l~~~~~G~~gf~lLl~FFl~sS~~TK~k~~ 145 (327)
|||.|=++.-.-....+ .+....++.++++.+.--.+-|+|++
T Consensus 4 ldP~gp~a~~i~~L~~~-~~~i~~iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 4 LDPKGQIGLEQRSLILT-AFGLMLIVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp SSCCSCCHHHHHHHHHH-HHHHTTTTTTHHHHHHHTTTTTTTTS
T ss_pred cCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhheeeecc
Confidence 56666665554443322 22222233334444444455566543
No 3
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.94 E-value=88 Score=21.22 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=18.4
Q ss_pred ccCCceeEeeCCeecCCCCCcc
Q 020374 215 AYGKTTYLVTTFKVVPRGTEGA 236 (327)
Q Consensus 215 ls~~~PrLITT~k~VppGTnGg 236 (327)
..+.+|+.|+....+.||.+|+
T Consensus 18 ~~~g~p~~V~e~~~~kpGk~G~ 39 (69)
T d1iz6a1 18 IIDDEPCRIVNITVSSPGKHGS 39 (69)
T ss_dssp EETTEEEEEEEEEECCCCTTSC
T ss_pred EECCEEEEEEEEEEEcCCCcCc
Confidence 3467899999999999999775
No 4
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=6.40 E-value=90 Score=21.38 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=18.4
Q ss_pred ccCCceeEeeCCeecCCCCCcc
Q 020374 215 AYGKTTYLVTTFKVVPRGTEGA 236 (327)
Q Consensus 215 ls~~~PrLITT~k~VppGTnGg 236 (327)
..+++|+.|+....+.||..|+
T Consensus 21 ~~~g~p~~V~~~~~~kpgk~G~ 42 (71)
T d1bkba1 21 VIDGEPCRVVEIEKSKTGKHGS 42 (71)
T ss_dssp EETTEEEEEEEEEEECCSTTSC
T ss_pred EECCEEEEEEEEEEECCCCCCc
Confidence 4567899999999999998774
No 5
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.62 E-value=1.2e+02 Score=20.85 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.7
Q ss_pred cCCceeEeeCCeecCCCCCcc
Q 020374 216 YGKTTYLVTTFKVVPRGTEGA 236 (327)
Q Consensus 216 s~~~PrLITT~k~VppGTnGg 236 (327)
.+++|+.|+....+.||.+|.
T Consensus 23 ~~g~p~~V~e~~~~kpGk~G~ 43 (73)
T d2eifa1 23 IDGVPCEIVDISVSKPGKHGG 43 (73)
T ss_dssp ETTEEEEEEEEEECCCCSSSC
T ss_pred ECCEEEEEEEEEEECCCCccc
Confidence 356799999999999999883
No 6
>g1kve.1 d.70.1.2 (A:,B:) SMK toxin {Halotolerant yeast (Pichia farinosa) [TaxId: 4920]}
Probab=5.07 E-value=1.6e+02 Score=22.22 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=25.6
Q ss_pred cCCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q 020374 229 VPRGTEGAVSVEGTFAGIFASILLAWVGCLT 259 (327)
Q Consensus 229 VppGTnGgVSllGtlAsllGs~lIa~~a~ll 259 (327)
.-.|-+|+-+.-|+..+++|.+.-++++.+.
T Consensus 15 aiagcsgaatfgglaggivgciaagilailq 45 (140)
T g1kve.1 15 AIAGCSGAATFGGLAGGIVGCIAAGILAILQ 45 (140)
T ss_dssp CBCCCSSCCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred hhhCCccccccccccchhHHHHHHHHHHHHh
Confidence 3469999999999999999988877776654
No 7
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=4.92 E-value=1.1e+02 Score=21.37 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=9.8
Q ss_pred CCcccccccccCC
Q 020374 12 PVPALWFPHSLQK 24 (327)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (327)
+-|.||.||-+..
T Consensus 73 ~~p~LW~P~g~g~ 85 (111)
T d2je8a1 73 TNPVRWMPNGWGT 85 (111)
T ss_dssp ESCCCBCCTTSSC
T ss_pred CCccCcCCCCCCC
Confidence 3479999997664
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.40 E-value=3.4e+02 Score=16.82 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 020374 239 VEGTFAGIFASILLAWVGCLT 259 (327)
Q Consensus 239 llGtlAsllGs~lIa~~a~ll 259 (327)
++|++++-.+++++..+.|+.
T Consensus 17 l~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 17 LAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhccchhhhhhccceeEEec
Confidence 467888888888887766653
No 9
>d2vzsa1 b.1.4.1 (A:226-335) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=3.84 E-value=1.6e+02 Score=20.56 Aligned_cols=12 Identities=25% Similarity=0.911 Sum_probs=9.1
Q ss_pred CcccccccccCC
Q 020374 13 VPALWFPHSLQK 24 (327)
Q Consensus 13 ~~~~~~~~~~~~ 24 (327)
-|.||-||+..+
T Consensus 72 ~p~LW~P~~~e~ 83 (110)
T d2vzsa1 72 RPNVWWPAGMGG 83 (110)
T ss_dssp SCCCCCCTTSSC
T ss_pred CCceeCCCCCCC
Confidence 478999987654
No 10
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=3.60 E-value=4.8e+02 Score=18.22 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHh
Q 020374 232 GTEGAVSVEGTFAGIFASILLAWVGCLT 259 (327)
Q Consensus 232 GTnGgVSllGtlAsllGs~lIa~~a~ll 259 (327)
|++.|.++.=++.+.+|+.+...+....
T Consensus 35 G~~~g~~P~eLllaala~C~~~~~~~~a 62 (132)
T d2pn2a1 35 GKGEAFSPTDLLATSLASCMLTIIGIKA 62 (132)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Done!