Query 020376
Match_columns 327
No_of_seqs 250 out of 607
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:56:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dt4_A Hypothetical protein PH 99.9 3.3E-27 1.1E-31 201.4 11.2 110 126-241 10-122 (143)
2 2hx0_A Putative DNA-binding pr 99.9 4.5E-26 1.5E-30 197.3 16.2 112 120-240 13-125 (154)
3 3htn_A Putative DNA binding pr 99.9 1E-26 3.5E-31 200.4 11.9 110 126-240 16-128 (149)
4 2p6y_A Hypothetical protein VC 99.9 4.8E-26 1.6E-30 194.6 15.8 108 124-240 1-109 (142)
5 2h6l_A Hypothetical protein; N 99.9 1.8E-26 6.2E-31 197.4 10.1 111 125-242 9-122 (146)
6 3hwu_A Putative DNA-binding pr 99.9 4.8E-24 1.6E-28 183.2 13.1 110 126-240 13-125 (147)
7 2ezd_A High mobility group pro 92.9 0.051 1.7E-06 34.4 2.0 16 89-106 3-18 (26)
8 4dyq_A Gene 1 protein; GP1, oc 63.2 2.2 7.4E-05 35.4 1.0 14 54-67 3-16 (140)
9 1xv2_A ALDC, hypothetical prot 43.6 75 0.0026 29.0 7.9 84 149-235 108-202 (237)
10 2esy_A LUNG surfactant protein 37.7 14 0.00048 24.3 1.5 12 18-29 1-12 (32)
11 1t3g_A X-linked interleukin-1 26.0 41 0.0014 28.2 2.9 36 123-158 40-77 (159)
12 4i95_A Putative uncharacterize 23.8 52 0.0018 28.3 3.1 34 152-187 37-70 (142)
No 1
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.94 E-value=3.3e-27 Score=201.38 Aligned_cols=110 Identities=17% Similarity=0.288 Sum_probs=99.4
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 020376 126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS 202 (327)
Q Consensus 126 ~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~~~~ 202 (327)
++|++||++||||+++|.+||+++.+..|+++++|++++|+|+|++.+. ..++++|+|||+||+|||.+.++ +
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g----~ 85 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG----E 85 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC----C
Confidence 7999999999999999999998776666667999999999999998764 36889999999999999999765 4
Q ss_pred CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEec
Q 020376 203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL 241 (327)
Q Consensus 203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF~ 241 (327)
++.|||++|+|.||+++||||..++ +. ++||+|.+|.
T Consensus 86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~ 122 (143)
T 2dt4_A 86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELK 122 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEE
T ss_pred ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcC
Confidence 8999999999999999999999888 55 9999999983
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.94 E-value=4.5e-26 Score=197.33 Aligned_cols=112 Identities=23% Similarity=0.427 Sum_probs=102.3
Q ss_pred cCCCCceeEEEEEcCCCcHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCCC
Q 020376 120 SVGTNFTPHVITINAGEDVMMKVISFSQ-QGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQ 198 (327)
Q Consensus 120 s~g~~f~phVIrV~~GEDVvekI~~Faq-q~~raicILSaiGaVSnVTLrq~~~~~~t~t~eG~FEILSLsGsis~~e~g 198 (327)
+....+++|++||++||||+++|.+||+ ++.+++||++++|++++++|||++... +++|+|+|||+||+|||++.
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--- 88 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT--- 88 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence 3567899999999999999999999996 566689999999999999999999875 78899999999999999985
Q ss_pred CCcCCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376 199 GTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 240 (327)
Q Consensus 199 ~~~~~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF 240 (327)
..|||++|+|.||+++||||++++++..++||+|..|
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~ 125 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL 125 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc
Confidence 2799999999999999999998777778999999988
No 3
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.94 E-value=1e-26 Score=200.39 Aligned_cols=110 Identities=16% Similarity=0.278 Sum_probs=101.0
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 020376 126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS 202 (327)
Q Consensus 126 ~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~~~~ 202 (327)
+.|++||++||||+++|.+||+++.+..|+++++|++++|+|++++.+. ..++|+|+|||+||+|||++.++ +
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~ 91 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q 91 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence 7899999999999999999999888877777999999999999998764 36889999999999999999865 4
Q ss_pred CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376 203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 240 (327)
Q Consensus 203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF 240 (327)
++.|||++|+|.||+|+||||..+ ++..++||+|..+
T Consensus 92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~ 128 (149)
T 3htn_A 92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDY 128 (149)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEEC
T ss_pred ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEc
Confidence 899999999999999999999987 5678999999988
No 4
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.94 E-value=4.8e-26 Score=194.63 Aligned_cols=108 Identities=26% Similarity=0.390 Sum_probs=97.9
Q ss_pred CceeEEEEEcCCCcHHHHHHHHHHh-CCccEEEEEeeceeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCCCCCcC
Q 020376 124 NFTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRS 202 (327)
Q Consensus 124 ~f~phVIrV~~GEDVvekI~~Faqq-~~raicILSaiGaVSnVTLrq~~~~~~t~t~eG~FEILSLsGsis~~e~g~~~~ 202 (327)
+|++|++||++||||+++|.+||++ +.+++||++++|++++++|++++... +++|+|+|||+||+|||.++
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~------- 72 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ------- 72 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-------
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-------
Confidence 3789999999999999999999976 55578999999999999999999864 78899999999999999984
Q ss_pred CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376 203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 240 (327)
Q Consensus 203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF 240 (327)
..|||++|+|.||+++||||++++++..|+||+|.+|
T Consensus 73 -~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~ 109 (142)
T 2p6y_A 73 -HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109 (142)
T ss_dssp -CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC
T ss_pred -CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc
Confidence 2699999999999999999998677788999999988
No 5
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.93 E-value=1.8e-26 Score=197.41 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=98.8
Q ss_pred ceeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCc
Q 020376 125 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTR 201 (327)
Q Consensus 125 f~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~~~ 201 (327)
-++|++||++||||+++|.+||++..+..|+++++|+|++++|++++... ..++++|+|||+||+|||++.++
T Consensus 9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg---- 84 (146)
T 2h6l_A 9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS---- 84 (146)
T ss_dssp CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC----
Confidence 36999999999999999999998766655556999999999999998775 37889999999999999999765
Q ss_pred CCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 020376 202 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP 242 (327)
Q Consensus 202 ~~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF~~ 242 (327)
+++.|||++|+ .||+++||||.+++| .|+||+|.+|..
T Consensus 85 ~p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~ 122 (146)
T 2h6l_A 85 KPFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSG 122 (146)
T ss_dssp EEEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBS
T ss_pred CceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCC
Confidence 48999999999 999999999998885 699999999843
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.91 E-value=4.8e-24 Score=183.18 Aligned_cols=110 Identities=19% Similarity=0.289 Sum_probs=98.8
Q ss_pred eeEEEEEcCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 020376 126 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS 202 (327)
Q Consensus 126 ~phVIrV~~GEDVvekI~~Faqq~~raicILSaiGaVSnVTLrq~~~~~---~t~t~eG~FEILSLsGsis~~e~g~~~~ 202 (327)
+.+++||++||||+++|.+||+++.+..++++++|++++++|++++.+. ...+++ ++||+||+|||++.|+ +
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~ 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence 5699999999999999999999988888888999999999999998764 256788 8999999999998775 4
Q ss_pred CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEe
Q 020376 203 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 240 (327)
Q Consensus 203 ~~~HLHVSLA~~dG~ViGGHV~g~lIAastVEVVV~sF 240 (327)
++.|||++|+|.||+++||||..+.|...|+||+|..+
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~ 125 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc
Confidence 99999999999999999999998855445999999986
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=92.93 E-value=0.051 Score=34.41 Aligned_cols=16 Identities=44% Similarity=0.497 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCCcccc
Q 020376 89 SGKRGRGRVSGHESKHYK 106 (327)
Q Consensus 89 ~~kr~Rgr~~p~gs~~k~ 106 (327)
..||+||| |.|||||.
T Consensus 3 tpKrpRgR--pkGSKNk~ 18 (26)
T 2ezd_A 3 TPKRPRGR--PKGSKNKG 18 (26)
T ss_dssp SCCCCSSC--CTTCCCCS
T ss_pred CCcCCCCC--cCcccccC
Confidence 35999999 99999974
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=63.23 E-value=2.2 Score=35.40 Aligned_cols=14 Identities=43% Similarity=0.878 Sum_probs=6.1
Q ss_pred hhhccCCCCCCCCC
Q 020376 54 EKKKRGRPRKYGPD 67 (327)
Q Consensus 54 ~kkKRGRPrKY~~d 67 (327)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 47999999999875
No 9
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=43.62 E-value=75 Score=29.05 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=48.4
Q ss_pred CCccEEEEEeeceeeeEEEeCCCCCCC-------ceeeccceeEEEeeeee----eccCCCCCcCCCCceEEEEeCCCCc
Q 020376 149 GPRAICILSANGVISNVTLRQPDSSGG-------TLTYEGRFEILSLSGSF----MLTESQGTRSRSGGMSVSLASPDGR 217 (327)
Q Consensus 149 ~~raicILSaiGaVSnVTLrq~~~~~~-------t~t~eG~FEILSLsGsi----s~~e~g~~~~~~~HLHVSLA~~dG~ 217 (327)
.....|.+-.-|..++|..|-...... .+.-.-.|++-...|++ ++.--+|. -..++|+-+-+.| |
T Consensus 108 s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi--~v~G~HlHFisdD-r 184 (237)
T 1xv2_A 108 SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV--GSAGFHIHFADDE-R 184 (237)
T ss_dssp CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT--BCSEEEEEEEETT-S
T ss_pred ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc--CCceeEEEEEcCC-C
Confidence 455678889999999999996532111 11111226666666655 44432222 2334444444434 4
Q ss_pred EEeeeccCccEEecceEE
Q 020376 218 VVGGAVAGLLVAAGPVQV 235 (327)
Q Consensus 218 ViGGHV~g~lIAastVEV 235 (327)
-+||||.+-.+-..++++
T Consensus 185 ~~GGHVldf~~~~~~~~~ 202 (237)
T 1xv2_A 185 AYGGHVLDFEVDDVVVEI 202 (237)
T ss_dssp SCEEEEEEEEEEEEEEEE
T ss_pred CCCcceEEEEecceEEEE
Confidence 589999976555555555
No 10
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=37.68 E-value=14 Score=24.28 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=10.4
Q ss_pred CCCCCccCCCCC
Q 020376 18 APSAYHVAPRTE 29 (327)
Q Consensus 18 ~p~~~~~~~~~~ 29 (327)
.|+||.++||.+
T Consensus 1 sPPdYSa~P~gr 12 (32)
T 2esy_A 1 SPPDYSAAPRGR 12 (32)
T ss_dssp CCCCCCSCCCSS
T ss_pred CCCccccCcCcc
Confidence 489999999886
No 11
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=26.00 E-value=41 Score=28.22 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=28.5
Q ss_pred CCceeEEE--EEcCCCcHHHHHHHHHHhCCccEEEEEe
Q 020376 123 TNFTPHVI--TINAGEDVMMKVISFSQQGPRAICILSA 158 (327)
Q Consensus 123 ~~f~phVI--rV~~GEDVvekI~~Faqq~~raicILSa 158 (327)
.+++..+= .+.+|++|.+.|.+..++..+.++|||-
T Consensus 40 ~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 40 YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 45554432 3679999999999999999999999985
No 12
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=23.82 E-value=52 Score=28.34 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=28.6
Q ss_pred cEEEEEeeceeeeEEEeCCCCCCCceeeccceeEEE
Q 020376 152 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILS 187 (327)
Q Consensus 152 aicILSaiGaVSnVTLrq~~~~~~t~t~eG~FEILS 187 (327)
..=|||.=|.+.|+++.. + .+..++..|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence 567899999999999993 3 446899999999987
Done!