Query 020379
Match_columns 327
No_of_seqs 276 out of 1338
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4406 CDC42 Rho GTPase-activ 100.0 7.1E-49 1.5E-53 367.8 12.1 288 24-324 148-454 (467)
2 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 7.9E-43 1.7E-47 307.4 18.2 174 131-306 1-183 (188)
3 cd04390 RhoGAP_ARHGAP22_24_25 100.0 7.6E-42 1.6E-46 303.9 20.5 167 131-297 1-177 (199)
4 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 7.3E-42 1.6E-46 304.0 19.3 163 133-297 1-181 (200)
5 cd04372 RhoGAP_chimaerin RhoGA 100.0 2.7E-41 5.8E-46 299.2 20.7 161 133-295 1-170 (194)
6 cd04407 RhoGAP_myosin_IXB RhoG 100.0 4.5E-41 9.8E-46 295.6 20.2 160 133-295 1-167 (186)
7 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 2.5E-41 5.4E-46 302.9 18.9 160 133-294 1-188 (211)
8 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 3.9E-41 8.5E-46 296.5 19.5 161 133-295 1-169 (187)
9 cd04406 RhoGAP_myosin_IXA RhoG 100.0 5.1E-41 1.1E-45 295.3 19.8 157 133-292 1-163 (186)
10 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 3.8E-41 8.3E-46 300.2 18.7 160 133-294 1-180 (203)
11 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 3.8E-41 8.3E-46 298.2 18.4 161 131-294 1-170 (195)
12 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 5.4E-41 1.2E-45 297.3 18.4 159 133-293 1-167 (196)
13 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 8.2E-41 1.8E-45 301.1 18.8 162 130-293 2-169 (220)
14 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 9.5E-41 2.1E-45 297.8 18.6 162 133-294 1-174 (207)
15 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 1.9E-40 4.1E-45 292.6 20.0 176 131-306 1-184 (189)
16 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 3E-40 6.4E-45 297.1 20.3 163 132-294 1-174 (216)
17 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 2.4E-40 5.2E-45 290.2 18.2 156 133-289 1-164 (182)
18 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 3.6E-40 7.8E-45 289.8 19.1 162 133-297 1-169 (185)
19 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 6.4E-40 1.4E-44 292.4 20.8 162 130-293 2-171 (203)
20 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 5.8E-40 1.3E-44 290.9 19.9 166 129-294 2-172 (195)
21 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 5.3E-40 1.1E-44 290.1 19.0 178 139-317 4-193 (200)
22 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 5.5E-40 1.2E-44 296.9 18.7 161 132-293 1-201 (225)
23 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.5E-39 3.3E-44 291.9 20.5 161 133-293 1-182 (213)
24 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 1.2E-39 2.5E-44 288.3 18.8 157 132-293 1-163 (192)
25 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 2E-39 4.4E-44 285.4 19.2 164 133-297 1-170 (187)
26 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 3.4E-39 7.4E-44 287.3 19.5 158 132-292 1-165 (202)
27 cd04377 RhoGAP_myosin_IX RhoGA 100.0 4.9E-39 1.1E-43 282.9 20.1 158 133-293 1-164 (186)
28 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 3E-39 6.5E-44 286.6 17.7 165 132-297 1-174 (196)
29 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 1.3E-38 2.8E-43 281.6 19.4 173 133-307 1-187 (192)
30 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 9.1E-39 2E-43 282.2 17.5 160 132-291 1-174 (190)
31 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 5.2E-38 1.1E-42 280.3 19.2 148 147-294 6-169 (206)
32 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 6.6E-38 1.4E-42 276.9 19.1 148 146-294 13-166 (193)
33 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 1.2E-37 2.6E-42 279.1 17.9 178 133-312 1-208 (212)
34 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 3.6E-37 7.7E-42 275.3 19.1 170 133-312 1-196 (208)
35 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 9.4E-37 2E-41 267.9 19.9 159 134-295 2-168 (184)
36 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 1.5E-36 3.3E-41 270.0 16.9 147 149-295 27-185 (203)
37 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 2.5E-36 5.5E-41 272.3 16.7 169 125-295 5-199 (220)
38 smart00324 RhoGAP GTPase-activ 100.0 4.6E-33 1E-37 241.8 19.2 147 149-295 2-155 (174)
39 KOG2200 Tumour suppressor prot 100.0 1.5E-32 3.2E-37 266.5 12.7 161 128-290 296-464 (674)
40 cd00159 RhoGAP RhoGAP: GTPase- 100.0 1.4E-31 3.1E-36 230.4 16.9 143 151-293 1-149 (169)
41 PF00620 RhoGAP: RhoGAP domain 100.0 5.9E-32 1.3E-36 229.2 11.6 142 151-292 1-149 (151)
42 KOG4407 Predicted Rho GTPase-a 100.0 4.5E-32 9.8E-37 278.6 10.1 172 130-302 1155-1337(1973)
43 KOG4269 Rac GTPase-activating 100.0 5.1E-32 1.1E-36 271.7 10.2 164 127-292 894-1071(1112)
44 KOG1450 Predicted Rho GTPase-a 100.0 7E-31 1.5E-35 261.1 15.3 162 129-292 453-622 (650)
45 KOG4270 GTPase-activator prote 100.0 1.7E-30 3.7E-35 257.6 11.4 166 127-293 141-315 (577)
46 KOG1453 Chimaerin and related 100.0 5.6E-30 1.2E-34 270.7 11.3 203 88-293 559-773 (918)
47 KOG3564 GTPase-activating prot 100.0 8.3E-29 1.8E-33 235.3 12.3 206 87-296 299-513 (604)
48 KOG2710 Rho GTPase-activating 99.9 3.1E-27 6.6E-32 226.2 14.8 142 148-289 92-254 (412)
49 KOG1117 Rho- and Arf-GTPase ac 99.9 2.2E-25 4.8E-30 223.3 14.5 162 145-307 722-891 (1186)
50 KOG1451 Oligophrenin-1 and rel 99.9 2.1E-25 4.5E-30 216.4 11.3 161 152-312 390-567 (812)
51 KOG1452 Predicted Rho GTPase-a 99.9 1.9E-21 4.1E-26 177.4 11.0 160 129-290 181-352 (442)
52 KOG4271 Rho-GTPase activating 99.8 6.7E-20 1.5E-24 185.9 4.9 156 129-287 914-1076(1100)
53 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.8 4E-18 8.7E-23 150.1 13.9 144 150-293 6-168 (198)
54 KOG4724 Predicted Rho GTPase-a 99.7 1.4E-17 3.1E-22 164.4 8.5 166 126-297 76-247 (741)
55 cd04405 RhoGAP_BRCC3-like RhoG 99.7 7.8E-16 1.7E-20 137.1 13.8 177 131-312 20-228 (235)
56 KOG4370 Ral-GTPase effector RL 99.3 2E-12 4.3E-17 122.6 7.4 186 126-312 45-278 (514)
57 KOG3565 Cdc42-interacting prot 99.3 7.2E-12 1.6E-16 127.8 8.0 147 146-293 214-369 (640)
58 PF08101 DUF1708: Domain of un 98.8 6.2E-08 1.3E-12 94.6 14.7 145 149-293 7-170 (420)
59 PF13716 CRAL_TRIO_2: Divergen 98.3 2.2E-07 4.8E-12 78.3 2.5 76 23-108 66-146 (149)
60 KOG4724 Predicted Rho GTPase-a 98.2 1.2E-06 2.7E-11 87.8 3.9 160 129-292 413-591 (741)
61 KOG1453 Chimaerin and related 96.6 0.0019 4E-08 69.8 3.9 173 132-306 462-682 (918)
62 cd00170 SEC14 Sec14p-like lipi 96.1 0.0023 5E-08 52.9 1.3 62 25-96 83-146 (157)
63 smart00516 SEC14 Domain in hom 95.8 0.0054 1.2E-07 51.4 2.1 63 23-95 79-144 (158)
64 KOG4271 Rho-GTPase activating 94.4 0.052 1.1E-06 57.3 4.9 141 148-288 369-536 (1100)
65 KOG1449 Predicted Rho GTPase-a 92.9 0.0083 1.8E-07 60.1 -3.9 144 129-291 206-355 (670)
66 KOG1449 Predicted Rho GTPase-a 91.7 0.03 6.5E-07 56.2 -1.6 36 258-293 1-36 (670)
67 PF00650 CRAL_TRIO: CRAL/TRIO 61.8 5.4 0.00012 32.9 1.9 54 33-96 91-148 (159)
68 COG0292 RplT Ribosomal protein 47.6 17 0.00036 29.3 2.4 39 8-46 16-61 (118)
69 PF10928 DUF2810: Protein of u 37.0 15 0.00033 25.0 0.6 31 17-53 7-38 (54)
70 KOG4370 Ral-GTPase effector RL 34.7 50 0.0011 32.7 3.9 34 199-232 117-150 (514)
71 PF12491 ApoB100_C: Apolipopro 33.8 1.7E+02 0.0037 20.6 5.6 22 245-266 29-51 (58)
72 PF02724 CDC45: CDC45-like pro 31.4 25 0.00054 36.8 1.5 39 8-46 330-372 (622)
73 PF01418 HTH_6: Helix-turn-hel 28.9 1E+02 0.0022 22.6 4.0 41 236-282 4-44 (77)
74 PF04556 DpnII: DpnII restrict 28.3 33 0.00071 32.3 1.5 33 14-46 213-247 (286)
75 KOG1471 Phosphatidylinositol t 27.5 47 0.001 31.1 2.5 37 37-83 193-230 (317)
76 cd07618 BAR_Rich1 The Bin/Amph 27.2 40 0.00086 31.0 1.8 32 108-139 210-245 (246)
77 cd08324 CARD_NOD1_CARD4 Caspas 25.7 1.6E+02 0.0034 22.5 4.5 55 212-266 20-75 (85)
78 PRK14101 bifunctional glucokin 23.3 1.4E+02 0.003 31.2 5.3 33 234-266 342-374 (638)
79 KOG1470 Phosphatidylinositol t 21.8 83 0.0018 30.2 2.9 70 17-96 161-231 (324)
80 COG4835 Uncharacterized protei 21.8 69 0.0015 25.7 2.0 45 170-216 62-106 (124)
No 1
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=7.1e-49 Score=367.79 Aligned_cols=288 Identities=23% Similarity=0.353 Sum_probs=245.8
Q ss_pred hhhhhhchhHhhHHHHhhhHHhh-hccchhHHHHHHHhcCcccccchhhhhhHHhhhhccccccccccccchhhcCccch
Q 020379 24 LREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKV 102 (327)
Q Consensus 24 ~~~~~~~y~~~~r~~kkNlk~l~-vhp~~~~Ks~w~~~~~~~~~~~~~~~~iS~kf~~k~~~~~~~s~l~~~v~~~~~~~ 102 (327)
+.+.-++|.++||+||||+|+|| |||+||+|..|.+++ ++||.||++|+.|.++++||.++++++++.+
T Consensus 148 l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~k----------plIS~KF~rKi~Y~n~lseL~~~l~l~rL~l 217 (467)
T KOG4406|consen 148 LQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFK----------PLISLKFTRKIIYFNSLSELFEALKLNRLKL 217 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHh----------hhcchhhhceeEEeehHHHHHHhhhhhhhcC
Confidence 45566779999999999999999 999999999999999 9999999999999999999999999999999
Q ss_pred h-HHHHHhhhcchh-----hHhhHHHhhcCCCCCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcC-CCCcCeeecc
Q 020379 103 E-EAAKKTAQKSKT-----ILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG-LNSQFLFKAE 175 (327)
Q Consensus 103 ~-e~~~~~~~k~~~-----~~~~~~~~~~~~~~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~g-l~~eGIFR~s 175 (327)
+ ++.....+-... -..+.....+...+++.||++|+.+......+..||.+|..|+++|..+| +++||+||+|
T Consensus 218 P~~v~~~D~~~~s~~~~~a~~p~~~~~pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS 297 (467)
T KOG4406|consen 218 PPEVLKHDDKLLSKAKTPAPPPEKMTPPRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRS 297 (467)
T ss_pred ChhhhhhhhcccccccCCCCCcccCCCCCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccc
Confidence 5 665543322111 11112223445567889999999998877668899999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHhhH-----HHHHHHHHHHHhh-cchh
Q 020379 176 GDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKK-LSNV 249 (327)
Q Consensus 176 g~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~-----~~~i~~l~~ll~~-LP~~ 249 (327)
++.+.+.++.+.+|+|..+++....|+|..|+++|.|||+||+||+++++|+.+.+. .++...+.++++. ||++
T Consensus 298 ~s~~~i~~~q~~~n~G~pVdle~~~~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ 377 (467)
T KOG4406|consen 298 ASRSPIREVQELYNTGEPVDLEVYKDLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEE 377 (467)
T ss_pred cCccchHHHHHHhcCCCcccHHHhccchhhHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChh
Confidence 999999999999999999998766679999999999999999999999999998754 4577889999987 9999
Q ss_pred hHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCHH-----HHHHHHHHHHhcccccCCCCCCCCCCccc
Q 020379 250 NFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE-----FYRQYWNHASRSSSKNMEPATPHGEWDML 324 (327)
Q Consensus 250 n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 324 (327)
|+.++++++.||.+|++|+..|+||+.|||+||||+|+|+...... .++.+++.++.+..+.. .+-.+||.+
T Consensus 378 ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~s~tl~q~npin~F~~~li~~~~~~f---~~~~~~~~~ 454 (467)
T KOG4406|consen 378 NYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDESLTLKQINPINKFTKFLIEHYKKLF---TTPENADKF 454 (467)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccccccccHHHhccHHHHHHHHHHhhhhcc---CCCCCcccc
Confidence 9999999999999999999999999999999999999999976633 45667778887665533 344555543
No 2
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=7.9e-43 Score=307.36 Aligned_cols=174 Identities=22% Similarity=0.379 Sum_probs=158.6
Q ss_pred CcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCC--CCCCCChhhhHHH
Q 020379 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAAL 208 (327)
Q Consensus 131 ~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~--~~~~~d~~~va~l 208 (327)
.+||++|+++++++ +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|.+.. ..+..|+|++|++
T Consensus 1 k~FG~~L~~~~~~~--~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~l 78 (188)
T cd04383 1 KLFNGSLEEYIQDS--GQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGV 78 (188)
T ss_pred CcCCccHHHHHHHC--CCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence 47999999999864 5699999999999999999999999999999999999999999987542 2346899999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHh
Q 020379 209 AKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM 282 (327)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf 282 (327)
||.|||+||+||+|.++|+.++++ .+++..++.++.+||+.|+.+|+||+.||++|+++++.||||++|||+||
T Consensus 79 LK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (188)
T cd04383 79 LKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICF 158 (188)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeee
Confidence 999999999999999999999876 34678899999999999999999999999999999999999999999999
Q ss_pred hhcccCCCC-CCHHHHHHHHHHHHh
Q 020379 283 APVIMWQKE-RKPEFYRQYWNHASR 306 (327)
Q Consensus 283 ~P~Ll~~~~-~~~~~~~~~~~~~~~ 306 (327)
||+|+|.++ .++.+++.+++++++
T Consensus 159 ~P~L~~~p~~~~~~~~~~~~~~~~~ 183 (188)
T cd04383 159 GPTLMPVPEGQDQVSCQAHVNELIK 183 (188)
T ss_pred eccccCCCCCccHHHHHHHHHHHHH
Confidence 999999654 567788888888876
No 3
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=7.6e-42 Score=303.89 Aligned_cols=167 Identities=27% Similarity=0.489 Sum_probs=152.9
Q ss_pred CcccCCHHHHHhhhcC--CCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHH
Q 020379 131 DVFGVPIEVTVQRQQY--GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (327)
Q Consensus 131 ~vFG~~L~~l~~~~~~--~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~l 208 (327)
++||+||++++.++.. +..||.+|.+|++||+++|+++|||||++|+...++++++.+|+|...++....|+|++|++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 5899999999976632 35799999999999999999999999999999999999999999987766667899999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHhhHH--------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHH
Q 020379 209 AKYYLASLPEPLTTFELYDEIKGAR--------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (327)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~~--------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAi 280 (327)
||.|||+||+||+|.+.|+.|+++. .++..++.++..||+.|+.+|.||+.||++|+++++.||||+.|||+
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 160 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLAT 160 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHH
Confidence 9999999999999999999998652 35678889999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCHHHH
Q 020379 281 EMAPVIMWQKERKPEFY 297 (327)
Q Consensus 281 vf~P~Ll~~~~~~~~~~ 297 (327)
||||+|+|++..++...
T Consensus 161 vf~P~llr~~~~~~~~~ 177 (199)
T cd04390 161 VFGPNILRPKVEDPATI 177 (199)
T ss_pred HhccccCCCCCCCHHHH
Confidence 99999999998887644
No 4
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.3e-42 Score=304.02 Aligned_cols=163 Identities=25% Similarity=0.425 Sum_probs=149.9
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~f 212 (327)
||+||+.++++. ++.||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|.+.....+.|+|++|++||.|
T Consensus 1 FGv~l~~l~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~f 78 (200)
T cd04408 1 FGVDFSQLPRDF--PEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHF 78 (200)
T ss_pred CCCCHHHHHHhC--CCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHH
Confidence 999999999875 579999999999999999999999999999999999999999998765434568999999999999
Q ss_pred HhhCCCCCCChhhHHHHhhHH------------------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCC
Q 020379 213 LASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMD 274 (327)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~~------------------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~ 274 (327)
||+||+||+|+++|+.|+++. +++..++.++..||+.|+.||.||+.||++|+++++.|+|+
T Consensus 79 LReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~ 158 (200)
T cd04408 79 LKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMS 158 (200)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999997652 35788999999999999999999999999999999999999
Q ss_pred hhhhHHHhhhcccCCCCCCHHHH
Q 020379 275 ARSLAMEMAPVIMWQKERKPEFY 297 (327)
Q Consensus 275 ~~nLAivf~P~Ll~~~~~~~~~~ 297 (327)
+.|||+||||+|++++......+
T Consensus 159 ~~NLAivf~P~Ll~~~~~~~~~~ 181 (200)
T cd04408 159 PNNLGIVFGPTLLRPLVGGDVSM 181 (200)
T ss_pred HhHhhhhhccccCCCCCCCchHH
Confidence 99999999999999998765433
No 5
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=2.7e-41 Score=299.19 Aligned_cols=161 Identities=23% Similarity=0.388 Sum_probs=147.3
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCC-CCCC--CCCChhhhHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA 209 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~-~~~~--~~~d~~~va~lL 209 (327)
||+||+++++++ +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+++. .++. ...|+|++|++|
T Consensus 1 FG~~L~~~~~~~--~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 78 (194)
T cd04372 1 YGCDLTTLVKAH--NTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGAL 78 (194)
T ss_pred CCCChHHHHHHc--CCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHH
Confidence 999999999986 45899999999999999999999999999999999999999997543 3332 235899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhh
Q 020379 210 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 283 (327)
Q Consensus 210 K~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~ 283 (327)
|.|||+||+||+|.++|+.|+++ .+++..++.++.+||++|+.+|.||+.||++|+++++.||||+.|||+|||
T Consensus 79 K~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~ 158 (194)
T cd04372 79 KLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFG 158 (194)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHh
Confidence 99999999999999999999876 357889999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCHH
Q 020379 284 PVIMWQKERKPE 295 (327)
Q Consensus 284 P~Ll~~~~~~~~ 295 (327)
|+|+++++.+..
T Consensus 159 P~Ll~~~~~~~~ 170 (194)
T cd04372 159 PTLMRPPEDSAL 170 (194)
T ss_pred cccCCCCCccHH
Confidence 999999987644
No 6
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=4.5e-41 Score=295.63 Aligned_cols=160 Identities=26% Similarity=0.446 Sum_probs=146.1
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~f 212 (327)
||+||+.++. .+..||.+|.+|++||+++|+++|||||++|+..+++++++.+|.|......+.+|+|++|++||.|
T Consensus 1 FGv~L~~~~~---~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04407 1 FGVRVGSLTS---NKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQW 77 (186)
T ss_pred CCCcHHHHHh---CCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHH
Confidence 9999999975 3569999999999999999999999999999999999999999988654334568999999999999
Q ss_pred HhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcc
Q 020379 213 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 286 (327)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~L 286 (327)
||+||+||+|+++|+.|+.+ .+++..++.++..||+.|+.+|.+|+.||++|+++++.|||+++|||+||||+|
T Consensus 78 lReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~L 157 (186)
T cd04407 78 LRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCL 157 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccc
Confidence 99999999999999999865 346888999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CCHH
Q 020379 287 MWQKE-RKPE 295 (327)
Q Consensus 287 l~~~~-~~~~ 295 (327)
+|+++ .++.
T Consensus 158 l~~~~~~d~~ 167 (186)
T cd04407 158 LRCPDSSDPL 167 (186)
T ss_pred cCCCCCCCHH
Confidence 99765 3443
No 7
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-41 Score=302.88 Aligned_cols=160 Identities=25% Similarity=0.484 Sum_probs=147.2
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~f 212 (327)
||+||+++++++ ++.||.+|.+|+++|+++|+++|||||++|+..+++++++.+|+|.+....+++|+|++|++||.|
T Consensus 1 FG~~L~~~~~~~--~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~f 78 (211)
T cd04409 1 FGADFAQVAKKS--PDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLY 78 (211)
T ss_pred CCCChHHHHHhC--CCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHH
Confidence 999999999985 468999999999999999999999999999999999999999998865444568999999999999
Q ss_pred HhhCCCCCCChhhHHHHhhHHH----------------------------HHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 020379 213 LASLPEPLTTFELYDEIKGARS----------------------------SIHAMRNTLKKLSNVNFMTLEYVTALLLRV 264 (327)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~~~----------------------------~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V 264 (327)
||+||+||+|+++|+.|+++.. .+..++.++..||++|+.+|+||+.||++|
T Consensus 79 LReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V 158 (211)
T cd04409 79 LRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRV 158 (211)
T ss_pred HHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987521 245788999999999999999999999999
Q ss_pred HhccccCCCChhhhHHHhhhcccCCCCCCH
Q 020379 265 SQKSLLNKMDARSLAMEMAPVIMWQKERKP 294 (327)
Q Consensus 265 ~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~ 294 (327)
+++++.|+||++|||+||||+|+|++..+.
T Consensus 159 ~~~s~~NkM~~~NLAivf~P~Llrp~~~~~ 188 (211)
T cd04409 159 SEQAEENKMSASNLGIIFGPTLIRPRPTDA 188 (211)
T ss_pred HcccccCCCChHHhhhhccccccCCCCCCc
Confidence 999999999999999999999999987764
No 8
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.9e-41 Score=296.49 Aligned_cols=161 Identities=24% Similarity=0.437 Sum_probs=149.6
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCC--CCCCChhhhHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL--PEGVNPFDVAALAK 210 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~--~~~~d~~~va~lLK 210 (327)
||+||+++++++ +..||.+|.+|++||+++|+++|||||++|+...+++++..+|.+...++ .+..|+|++|++||
T Consensus 1 FGv~L~~~~~~~--~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (187)
T cd04403 1 FGCHLEALCQRE--NSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALK 78 (187)
T ss_pred CCCChHHHHHHc--CCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHH
Confidence 999999999885 56899999999999999999999999999999999999999999877543 23569999999999
Q ss_pred HHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhh
Q 020379 211 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 284 (327)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P 284 (327)
.|||+||+||+|+++|+.|+++ .+++..++.++..||+.|+.+|.||+.||++|+++++.||||+.|||+||||
T Consensus 79 ~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P 158 (187)
T cd04403 79 LFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGP 158 (187)
T ss_pred HHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccc
Confidence 9999999999999999999876 3568899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCHH
Q 020379 285 VIMWQKERKPE 295 (327)
Q Consensus 285 ~Ll~~~~~~~~ 295 (327)
+|+|++.++..
T Consensus 159 ~ll~~~~~~~~ 169 (187)
T cd04403 159 TLLRPEQETGN 169 (187)
T ss_pred cccCCCCcchH
Confidence 99999987754
No 9
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=5.1e-41 Score=295.27 Aligned_cols=157 Identities=29% Similarity=0.488 Sum_probs=144.8
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~f 212 (327)
||++|+.++.. ++.||.+|.+|++||+++|+++|||||++|+..+++++++.+|.+......+++|+|++|++||.|
T Consensus 1 FGv~L~~l~~~---~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04406 1 FGVELSRLTSE---DRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQW 77 (186)
T ss_pred CCCchHHHHHC---CCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHH
Confidence 99999998753 468999999999999999999999999999999999999999987654444678999999999999
Q ss_pred HhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcc
Q 020379 213 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 286 (327)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~L 286 (327)
||+||+||+|.++|++|+++ .+++..++.++..||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|
T Consensus 78 LReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~l 157 (186)
T cd04406 78 LRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCI 157 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccc
Confidence 99999999999999999876 346778899999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020379 287 MWQKER 292 (327)
Q Consensus 287 l~~~~~ 292 (327)
+|+++.
T Consensus 158 l~~p~~ 163 (186)
T cd04406 158 LRCPDT 163 (186)
T ss_pred cCCCCC
Confidence 998764
No 10
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=3.8e-41 Score=300.19 Aligned_cols=160 Identities=25% Similarity=0.465 Sum_probs=148.2
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~f 212 (327)
||++|+.+++++ ++.||.+|.+|+++|+++|+++|||||++|+..+++++++.+|+|.+....+++|+|++|++||+|
T Consensus 1 FG~~L~~~~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~f 78 (203)
T cd04378 1 FGVDFSQVPRDF--PDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLF 78 (203)
T ss_pred CCCChHHHHHHC--CCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 999999999885 568999999999999999999999999999999999999999998765445568999999999999
Q ss_pred HhhCCCCCCChhhHHHHhhHH--------------------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCC
Q 020379 213 LASLPEPLTTFELYDEIKGAR--------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNK 272 (327)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~~--------------------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 272 (327)
||+||+||+|+++|+.|+++. +++..++.++..||++|+.+|.||+.||++|+++++.||
T Consensus 79 LReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 158 (203)
T cd04378 79 LRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENK 158 (203)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998752 246789999999999999999999999999999999999
Q ss_pred CChhhhHHHhhhcccCCCCCCH
Q 020379 273 MDARSLAMEMAPVIMWQKERKP 294 (327)
Q Consensus 273 M~~~nLAivf~P~Ll~~~~~~~ 294 (327)
|+++|||+||||+|+|++..+.
T Consensus 159 M~~~NLaivf~P~Ll~~~~~~~ 180 (203)
T cd04378 159 MSPNNLGIVFGPTLIRPRPGDA 180 (203)
T ss_pred CCHHHhhhhhccccCCCCCCCc
Confidence 9999999999999999998753
No 11
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.8e-41 Score=298.18 Aligned_cols=161 Identities=24% Similarity=0.491 Sum_probs=147.6
Q ss_pred CcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCC---CCCChhhhHH
Q 020379 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFDVAA 207 (327)
Q Consensus 131 ~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~---~~~d~~~va~ 207 (327)
++||++|++++.++ +..||.++.+|++||+++|+ +|||||++|+.++++++++.+|+|...++. ...|+|++|+
T Consensus 1 ~vFG~~L~~~~~~~--g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 77 (195)
T cd04384 1 RVFGCDLTEHLLNS--GQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSS 77 (195)
T ss_pred CcCCccHHHHHHHc--CCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHH
Confidence 48999999999875 56999999999999999999 599999999999999999999999765542 2469999999
Q ss_pred HHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHH
Q 020379 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (327)
Q Consensus 208 lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAiv 281 (327)
+||.|||+||+||+|+++|+.|+++ .+++..++.++.+||+.|+.+|.||+.||++|+++++.||||++|||+|
T Consensus 78 lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (195)
T cd04384 78 LCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIV 157 (195)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHh
Confidence 9999999999999999999999876 3568889999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCH
Q 020379 282 MAPVIMWQKERKP 294 (327)
Q Consensus 282 f~P~Ll~~~~~~~ 294 (327)
|||+|+++++...
T Consensus 158 f~P~L~~~~~~~~ 170 (195)
T cd04384 158 WAPNLLRSKQIES 170 (195)
T ss_pred hhhhcCCCCcccc
Confidence 9999999986443
No 12
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=5.4e-41 Score=297.27 Aligned_cols=159 Identities=26% Similarity=0.434 Sum_probs=146.2
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCC--CCCCCChhhhHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAALAK 210 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~--~~~~~d~~~va~lLK 210 (327)
||+||+.+++++ +..||.+|.+|++||+++|+++|||||++|+...++++++.+|++.... ..+..|+|++|++||
T Consensus 1 FGv~L~~~~~r~--~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (196)
T cd04387 1 FGVKISTVTKRE--RSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLK 78 (196)
T ss_pred CCCCHHHHHHhc--CCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHH
Confidence 999999999986 4589999999999999999999999999999999999999999875422 234689999999999
Q ss_pred HHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhh
Q 020379 211 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 284 (327)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P 284 (327)
.|||+||+||+|+++|+.|+++ ..++..++.++.+||++|+.+|.||+.||++|+++++.||||+.|||+||||
T Consensus 79 ~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P 158 (196)
T cd04387 79 LYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGP 158 (196)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHcc
Confidence 9999999999999999999876 2467789999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 020379 285 VIMWQKERK 293 (327)
Q Consensus 285 ~Ll~~~~~~ 293 (327)
+|+|++..+
T Consensus 159 ~Llr~~~~~ 167 (196)
T cd04387 159 TLLRPSEKE 167 (196)
T ss_pred ccCCCCccc
Confidence 999998654
No 13
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.2e-41 Score=301.13 Aligned_cols=162 Identities=30% Similarity=0.460 Sum_probs=149.8
Q ss_pred CCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHH
Q 020379 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALA 209 (327)
Q Consensus 130 ~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lL 209 (327)
+++||+||+.++++. +..||.+|.+|++||+.+|+++|||||++|+..++++|++.+|.+.+....+..++|++|++|
T Consensus 2 ~~vFGvpL~~~~~r~--g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 79 (220)
T cd04375 2 KNVFGVPLLVNLQRT--GQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADML 79 (220)
T ss_pred CCEecCcHHHHHhhc--CCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHH
Confidence 579999999999875 568999999999999999999999999999999999999999987655555678999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhh
Q 020379 210 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 283 (327)
Q Consensus 210 K~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~ 283 (327)
|.|||+||+||+|+++|+.|+++ .++++.++.++..||++|+.+|++|+.||++|+.|++.||||++|||+|||
T Consensus 80 K~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfa 159 (220)
T cd04375 80 KQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLA 159 (220)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHh
Confidence 99999999999999999999875 457889999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCC
Q 020379 284 PVIMWQKERK 293 (327)
Q Consensus 284 P~Ll~~~~~~ 293 (327)
|+||+....+
T Consensus 160 P~L~~~~~~~ 169 (220)
T cd04375 160 PSLFHLNTSR 169 (220)
T ss_pred hhhcCCCCCC
Confidence 9999986543
No 14
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.5e-41 Score=297.84 Aligned_cols=162 Identities=27% Similarity=0.364 Sum_probs=147.2
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCC-CCCC--CCCChhhhHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA 209 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~-~~~~--~~~d~~~va~lL 209 (327)
||+||+.++++++.+..||.+|.+|++||+++|+++|||||++|+...+++|++.+|++.. .++. ...|+|++|++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 9999999999987678999999999999999999999999999999999999999998763 3332 224899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHhhHH---------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHH
Q 020379 210 KYYLASLPEPLTTFELYDEIKGAR---------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (327)
Q Consensus 210 K~fLr~LPePLl~~~ly~~~~~~~---------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAi 280 (327)
|.|||+||+||+|.++|+.|+++. .....++.++.+||+.|+.+|+||+.||++|+++++.||||+.|||+
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAi 160 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAV 160 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHH
Confidence 999999999999999999998762 12456888999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCH
Q 020379 281 EMAPVIMWQKERKP 294 (327)
Q Consensus 281 vf~P~Ll~~~~~~~ 294 (327)
||||+||++++.+.
T Consensus 161 vf~P~Ll~~~~~~~ 174 (207)
T cd04379 161 CFGPVLMFCSQEFS 174 (207)
T ss_pred hhccccCCCCcccc
Confidence 99999999998774
No 15
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=1.9e-40 Score=292.64 Aligned_cols=176 Identities=23% Similarity=0.342 Sum_probs=156.9
Q ss_pred CcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHH
Q 020379 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 210 (327)
Q Consensus 131 ~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK 210 (327)
++||+||+++++++..+..||.+|.+|++||+++|+++|||||++|+...++++++.+|+|...++..++|+|++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 47999999999876667799999999999999999999999999999999999999999998877766789999999999
Q ss_pred HHHhhCCCCCCChhhHHHHhhH-------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhh
Q 020379 211 YYLASLPEPLTTFELYDEIKGA-------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 283 (327)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~-------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~ 283 (327)
+|||+||+||+|.+.|+.++++ .+++..++.+++.||+.|+.+|.+++.||++|+++++.|+||+.|||+|||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~ 160 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFG 160 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhcc
Confidence 9999999999999999999876 235678999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCC-HHHHHHHHHHHHh
Q 020379 284 PVIMWQKERK-PEFYRQYWNHASR 306 (327)
Q Consensus 284 P~Ll~~~~~~-~~~~~~~~~~~~~ 306 (327)
|+||+.+... ....++.++.++.
T Consensus 161 P~l~~~~~~~~~~~~~~~~~~~~~ 184 (189)
T cd04393 161 PDVFHVYTDVEDMKEQEICSRIMA 184 (189)
T ss_pred CceeCCCCCcccHHHHHHHHHHHH
Confidence 9999877643 2233444444443
No 16
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3e-40 Score=297.14 Aligned_cols=163 Identities=26% Similarity=0.388 Sum_probs=148.2
Q ss_pred cccCCHHHHHhhhc---CCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCC--CCCCCCChhhhH
Q 020379 132 VFGVPIEVTVQRQQ---YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDVA 206 (327)
Q Consensus 132 vFG~~L~~l~~~~~---~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~--~~~~~~d~~~va 206 (327)
|||+||+++++++. ++..||.+|.+|+++|+++|+++|||||++|+.++++++++.+|.+... ...+..|+|++|
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 69999999998864 3578999999999999999999999999999999999999999976422 223568999999
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHH
Q 020379 207 ALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (327)
Q Consensus 207 ~lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAi 280 (327)
++||.|||+||+||+|.++|+.|.++ .+++..++.++..||+.|+.+|+||+.||++|++|++.||||+.|||+
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 160 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAM 160 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHH
Confidence 99999999999999999999999876 346788999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCH
Q 020379 281 EMAPVIMWQKERKP 294 (327)
Q Consensus 281 vf~P~Ll~~~~~~~ 294 (327)
||||+||++...++
T Consensus 161 vfaP~l~~~~~~~~ 174 (216)
T cd04391 161 IMAPNLFPPRGKHS 174 (216)
T ss_pred HhccccCCCCCCCC
Confidence 99999999986554
No 17
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=2.4e-40 Score=290.24 Aligned_cols=156 Identities=28% Similarity=0.500 Sum_probs=145.7
Q ss_pred ccCCHHHHHhhhc--CCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHH
Q 020379 133 FGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 210 (327)
Q Consensus 133 FG~~L~~l~~~~~--~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK 210 (327)
||+||+++++++. .+..||.+|.+|++||+++|+++|||||++|+...++++++.+|++...++ +++|+|++|++||
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~-~~~d~h~va~lLK 79 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNL-EEYEPPTVASLLK 79 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCc-cccChHHHHHHHH
Confidence 9999999998863 356899999999999999999999999999999999999999999988665 4589999999999
Q ss_pred HHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhh
Q 020379 211 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 284 (327)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P 284 (327)
.|||+||+||+|.++|+.|.++ .+++..++.++.+||+.|+.+|.||+.||++|+++++.||||++|||+||||
T Consensus 80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 9999999999999999999875 3578899999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 020379 285 VIMWQ 289 (327)
Q Consensus 285 ~Ll~~ 289 (327)
+|+.+
T Consensus 160 ~l~~~ 164 (182)
T cd04381 160 TVQIS 164 (182)
T ss_pred cccCc
Confidence 99864
No 18
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-40 Score=289.81 Aligned_cols=162 Identities=30% Similarity=0.522 Sum_probs=149.7
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCC-CCCChhhhHHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKY 211 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~-~~~d~~~va~lLK~ 211 (327)
||+||++++.. +..||.+|.+|++||+++|+.+|||||++|+..+++++++.+|++...++. .++|+|++|++||+
T Consensus 1 FG~pL~~~~~~---~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~ 77 (185)
T cd04373 1 FGVPLANVVTS---EKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKS 77 (185)
T ss_pred CCCchHHHHhC---CCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHH
Confidence 99999999883 679999999999999999999999999999999999999999998776653 45799999999999
Q ss_pred HHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhc
Q 020379 212 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 285 (327)
Q Consensus 212 fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~ 285 (327)
|||+||+||+|+++|+.|.++ .+++..++.+++.||+.|+.+|.||+.||++|+++++.|+||++|||+||||+
T Consensus 78 fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~ 157 (185)
T cd04373 78 FFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPT 157 (185)
T ss_pred HHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccc
Confidence 999999999999999999876 34678899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHH
Q 020379 286 IMWQKERKPEFY 297 (327)
Q Consensus 286 Ll~~~~~~~~~~ 297 (327)
|+|++..+..+.
T Consensus 158 L~~~~~~~~~~~ 169 (185)
T cd04373 158 LMRPDFTSMEAL 169 (185)
T ss_pred cCCCCCCCHHHH
Confidence 999988775543
No 19
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.4e-40 Score=292.37 Aligned_cols=162 Identities=30% Similarity=0.501 Sum_probs=149.3
Q ss_pred CCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCC--CCCCCChhhhHH
Q 020379 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAA 207 (327)
Q Consensus 130 ~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~--~~~~~d~~~va~ 207 (327)
+++||+||+++++++ +..||.++.+|+.||+++|+.+|||||++|+..+++++++.+|.|.... .....|+|++|+
T Consensus 2 ~~~FG~~L~~~~~~~--~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~ 79 (203)
T cd04386 2 KPVFGTPLEEHLKRT--GREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVAS 79 (203)
T ss_pred CCcCCCCHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHH
Confidence 579999999999875 4589999999999999999999999999999999999999999987432 223469999999
Q ss_pred HHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHH
Q 020379 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (327)
Q Consensus 208 lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAiv 281 (327)
+||.|||+||+||+|.++|+.|+++ .+++..++.++.+||+.|+.+|+||+.||++|+++++.|+||++|||+|
T Consensus 80 ~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~ 159 (203)
T cd04386 80 ALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIV 159 (203)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHH
Confidence 9999999999999999999999876 3567899999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCC
Q 020379 282 MAPVIMWQKERK 293 (327)
Q Consensus 282 f~P~Ll~~~~~~ 293 (327)
|||+|+|++..+
T Consensus 160 faP~ll~~~~~~ 171 (203)
T cd04386 160 LAPNLLWAKNEG 171 (203)
T ss_pred hccccCCCCCCC
Confidence 999999998865
No 20
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.8e-40 Score=290.94 Aligned_cols=166 Identities=27% Similarity=0.522 Sum_probs=153.5
Q ss_pred CCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHH
Q 020379 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (327)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~l 208 (327)
++++||+||++++++.+.+..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|...++....|+|++|++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 56899999999998866557999999999999999999999999999999999999999999987766444599999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHhhH-----HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhh
Q 020379 209 AKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMA 283 (327)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~-----~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~ 283 (327)
||.|||+||+||+|.++|+.+.++ .+++..++.++++||+.|+.+|.+|+.||++|+.+++.|+|+++|||+|||
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfa 161 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFG 161 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeee
Confidence 999999999999999999999875 356789999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCH
Q 020379 284 PVIMWQKERKP 294 (327)
Q Consensus 284 P~Ll~~~~~~~ 294 (327)
|+|+|+++...
T Consensus 162 P~l~~~~~~~~ 172 (195)
T cd04404 162 PNLLWAKDASM 172 (195)
T ss_pred ccccCCCCccc
Confidence 99999987643
No 21
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=5.3e-40 Score=290.10 Aligned_cols=178 Identities=21% Similarity=0.326 Sum_probs=153.9
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhCCC
Q 020379 139 VTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPE 218 (327)
Q Consensus 139 ~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~LPe 218 (327)
+|.+...+++.+|.+|.+|+++|+++|+++|||||++|+.+ +.++++.+|.+......+.+|+|++|++||.|||+||+
T Consensus 4 ~~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPe 82 (200)
T cd04388 4 DLTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPN 82 (200)
T ss_pred cHHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCC
Confidence 44444456789999999999999999999999999999876 67899999986443334568999999999999999999
Q ss_pred CCCChhhHHHHhhHH-------HHHHHHHHHHh--hcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCC
Q 020379 219 PLTTFELYDEIKGAR-------SSIHAMRNTLK--KLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQ 289 (327)
Q Consensus 219 PLl~~~ly~~~~~~~-------~~i~~l~~ll~--~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~ 289 (327)
||||+++|++|+++. +++..++.+++ .||+.|+.||+||+.||.+|++|++.|+|+++|||+||||+|||+
T Consensus 83 PLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~ 162 (200)
T cd04388 83 PVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRF 162 (200)
T ss_pred ccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCC
Confidence 999999999998863 36778888887 899999999999999999999999999999999999999999999
Q ss_pred CCC---CHHHHHHHHHHHHhcccccCCCCCC
Q 020379 290 KER---KPEFYRQYWNHASRSSSKNMEPATP 317 (327)
Q Consensus 290 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (327)
+.. +.......++-++.+.+++.+.+|.
T Consensus 163 ~~~~~~~~~~~~~vvE~Li~~~~~e~~~~~~ 193 (200)
T cd04388 163 QPASSDSPEFHIRIIEVLITSEWNERQAAPA 193 (200)
T ss_pred CcccccchhhHHHHHHHHHHHHHhhcCCCCC
Confidence 754 3445566788888888888877653
No 22
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.5e-40 Score=296.95 Aligned_cols=161 Identities=29% Similarity=0.496 Sum_probs=145.0
Q ss_pred cccCCHHHHHhhhcC-------------CCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCC----C
Q 020379 132 VFGVPIEVTVQRQQY-------------GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN----A 194 (327)
Q Consensus 132 vFG~~L~~l~~~~~~-------------~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~----~ 194 (327)
|||++|++.+++.+. .+.||.+|.+|++||+++|+++|||||++|+..++++|++.+|.+.+ .
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 799999999976532 25799999999999999999999999999999999999999998653 3
Q ss_pred CCCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHhhH-----------------------HHHHHHHHHHHhhcchhhH
Q 020379 195 SLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-----------------------RSSIHAMRNTLKKLSNVNF 251 (327)
Q Consensus 195 ~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~-----------------------~~~i~~l~~ll~~LP~~n~ 251 (327)
+. +.+|+|++|++||.|||+||+||+|.++|++|.++ .+++..++.++.+||+.|+
T Consensus 81 ~~-~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~ 159 (225)
T cd04396 81 DW-DGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNR 159 (225)
T ss_pred Cc-cCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHH
Confidence 32 56899999999999999999999999999999653 2356778999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCC
Q 020379 252 MTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (327)
Q Consensus 252 ~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~ 293 (327)
.+|.||+.||++|+++++.||||++|||+||||+|+++++.+
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~ 201 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE 201 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc
Confidence 999999999999999999999999999999999999988754
No 23
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-39 Score=291.87 Aligned_cols=161 Identities=25% Similarity=0.384 Sum_probs=145.4
Q ss_pred ccCCHHHHHhhhcCC---------CCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCC-CCCCCCh
Q 020379 133 FGVPIEVTVQRQQYG---------KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNP 202 (327)
Q Consensus 133 FG~~L~~l~~~~~~~---------~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~-~~~~~d~ 202 (327)
||+||+.++++++.. ..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|++.... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 999999999997541 369999999999999999999999999999999999999999886432 2345799
Q ss_pred hhhHHHHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccc-----cC
Q 020379 203 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSL-----LN 271 (327)
Q Consensus 203 ~~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~-----~N 271 (327)
|++|++||.|||+||+||+|.++|+.|+++ .++...++.++..||+.|+.+|.||+.||++|+.+++ .|
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~N 160 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 999999999999999999999999999876 3467778899999999999999999999999998764 59
Q ss_pred CCChhhhHHHhhhcccCCCCCC
Q 020379 272 KMDARSLAMEMAPVIMWQKERK 293 (327)
Q Consensus 272 kM~~~nLAivf~P~Ll~~~~~~ 293 (327)
|||++|||+||||+|+|++..+
T Consensus 161 kM~~~NLAivf~P~Ll~~~~~~ 182 (213)
T cd04397 161 KMDIHNLATVITPNILYSKTDN 182 (213)
T ss_pred cCChHHhHHhhcccccCCCCCC
Confidence 9999999999999999998876
No 24
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-39 Score=288.30 Aligned_cols=157 Identities=25% Similarity=0.424 Sum_probs=148.2
Q ss_pred cccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHH
Q 020379 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKY 211 (327)
Q Consensus 132 vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~ 211 (327)
+||+||+++++ +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|...++ +++|+|++|++||+
T Consensus 1 ~FG~~L~~~~~----~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~va~~lK~ 75 (192)
T cd04402 1 LFGQPLSNICE----DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDL-KAEPVLLLASVLKD 75 (192)
T ss_pred CCCCcHHHHhC----CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCC-ccCCHHHHHHHHHH
Confidence 69999999987 45899999999999999999999999999999999999999999987765 56899999999999
Q ss_pred HHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhc
Q 020379 212 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 285 (327)
Q Consensus 212 fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~ 285 (327)
|||+||+||+|.+.|+.++++ .+++..++.++.+||+.|+.+|.||+.||++|+.+++.|+||++|||+||||+
T Consensus 76 flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~ 155 (192)
T cd04402 76 FLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPS 155 (192)
T ss_pred HHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhcccc
Confidence 999999999999999999876 34788999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 020379 286 IMWQKERK 293 (327)
Q Consensus 286 Ll~~~~~~ 293 (327)
|+|++..+
T Consensus 156 l~~~~~~~ 163 (192)
T cd04402 156 LLWPPASS 163 (192)
T ss_pred ccCCCCcc
Confidence 99999875
No 25
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-39 Score=285.38 Aligned_cols=164 Identities=27% Similarity=0.372 Sum_probs=148.9
Q ss_pred ccCCHHHHHhhhcC---CCCCCHHHHHHHHHHH-HcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHH
Q 020379 133 FGVPIEVTVQRQQY---GKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (327)
Q Consensus 133 FG~~L~~l~~~~~~---~~~VP~il~~~i~~i~-~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~l 208 (327)
||++|++++.+++. +..||.+|..|+++|. .+|+++|||||++|+...++++++.+|+|.. .+....|+|++|++
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~~~d~h~va~l 79 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDY-PLSGLEDPHVPASL 79 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCC-CccccCCHHHHHHH
Confidence 99999999987643 4689999999999986 5789999999999999999999999998864 33455799999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcc--ccCCCChhhhHHHhhhcc
Q 020379 209 AKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKS--LLNKMDARSLAMEMAPVI 286 (327)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s--~~NkM~~~nLAivf~P~L 286 (327)
||.|||+||+||+|.++|+++++..+..+.+++++.+||+.|+.+|.||+.||++|+.++ +.||||++|||+||||+|
T Consensus 80 LK~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l 159 (187)
T cd04389 80 LKLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNI 159 (187)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHcccc
Confidence 999999999999999999999998777788999999999999999999999999999754 789999999999999999
Q ss_pred cCCCCCCHHHH
Q 020379 287 MWQKERKPEFY 297 (327)
Q Consensus 287 l~~~~~~~~~~ 297 (327)
+|++..++...
T Consensus 160 ~~~~~~~~~~~ 170 (187)
T cd04389 160 LRCTSDDPRVI 170 (187)
T ss_pred CCCCCCCHHHH
Confidence 99998888743
No 26
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-39 Score=287.30 Aligned_cols=158 Identities=28% Similarity=0.389 Sum_probs=143.8
Q ss_pred cccCCHHHHHhhhc-CCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHH
Q 020379 132 VFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 210 (327)
Q Consensus 132 vFG~~L~~l~~~~~-~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK 210 (327)
+||+||+.++.+.. .+..||.+|.+|++||++ |+++|||||++|+..+++++++.+|+|.... ...++|++|++||
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~--~~~~~~~vaslLK 77 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL--SSALPCDVAGLLK 77 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc--cccCHHHHHHHHH
Confidence 69999999987542 356999999999999986 6999999999999999999999999987653 3578999999999
Q ss_pred HHHhhCCCCCCChhhHHHHhhHH------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhh
Q 020379 211 YYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAP 284 (327)
Q Consensus 211 ~fLr~LPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P 284 (327)
.|||+||+||+|.++|+.|+++. +++..++.++..||+.|+.+|.||+.||++|++|++.||||++|||+||||
T Consensus 78 ~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 78 QFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999998762 456778889999999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 020379 285 VIMWQKER 292 (327)
Q Consensus 285 ~Ll~~~~~ 292 (327)
+|+++++.
T Consensus 158 ~L~~~~~~ 165 (202)
T cd04394 158 NLFQSEEG 165 (202)
T ss_pred eeecCCCc
Confidence 99998864
No 27
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=4.9e-39 Score=282.93 Aligned_cols=158 Identities=29% Similarity=0.482 Sum_probs=145.5
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~f 212 (327)
||+||+.++.. +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|++......+.+|+|++|++||+|
T Consensus 1 FG~~L~~~~~~---~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~f 77 (186)
T cd04377 1 FGVSLSSLTSE---DRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQW 77 (186)
T ss_pred CCCCHHHHHhC---CCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHH
Confidence 99999999863 568999999999999999999999999999999999999999998543334568999999999999
Q ss_pred HhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcc
Q 020379 213 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVI 286 (327)
Q Consensus 213 Lr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~L 286 (327)
||+||+||+|+++|++|+++ .+++..++.++..||+.|+.+|.||+.||++|+.+++.|+|+++|||+||||+|
T Consensus 78 lr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l 157 (186)
T cd04377 78 LRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCI 157 (186)
T ss_pred HHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHh
Confidence 99999999999999999865 346788999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020379 287 MWQKERK 293 (327)
Q Consensus 287 l~~~~~~ 293 (327)
+|+++..
T Consensus 158 l~~~~~~ 164 (186)
T cd04377 158 LRCPDTA 164 (186)
T ss_pred cCCCCCC
Confidence 9988654
No 28
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3e-39 Score=286.56 Aligned_cols=165 Identities=27% Similarity=0.418 Sum_probs=149.0
Q ss_pred cccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCC-CC--CCCCChhhhHHH
Q 020379 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SL--PEGVNPFDVAAL 208 (327)
Q Consensus 132 vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~-~~--~~~~d~~~va~l 208 (327)
.||+||++...+. .+..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|+|... +. .+..|+|++|++
T Consensus 1 ~FGvpl~~~~~~~-~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~l 79 (196)
T cd04395 1 TFGVPLDDCPPSS-ENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSL 79 (196)
T ss_pred CCCccHHHHhccc-CCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHH
Confidence 5999999877543 3468999999999999999999999999999999999999999988753 22 234689999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHh
Q 020379 209 AKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM 282 (327)
Q Consensus 209 LK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf 282 (327)
||.|||+||+||+|.+.|++++++ .+++..++.++.+||+.|+.+|.||+.||++|+.+++.|+|+++|||+||
T Consensus 80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 999999999999999999999875 45778999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCHHHH
Q 020379 283 APVIMWQKERKPEFY 297 (327)
Q Consensus 283 ~P~Ll~~~~~~~~~~ 297 (327)
||+|+|+++.+....
T Consensus 160 aP~l~r~~~~~~~~~ 174 (196)
T cd04395 160 GPTLVRTSDDNMETM 174 (196)
T ss_pred ccccCCCCCCCHHHH
Confidence 999999998876543
No 29
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-38 Score=281.56 Aligned_cols=173 Identities=26% Similarity=0.418 Sum_probs=153.1
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCC-CCC----CCCChhhhHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SLP----EGVNPFDVAA 207 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~-~~~----~~~d~~~va~ 207 (327)
||++|++++.++ +..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|++... +.. ...|+|++|+
T Consensus 1 FG~~L~~~~~~~--~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~ 78 (192)
T cd04398 1 FGVPLEDLILRE--GDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVAS 78 (192)
T ss_pred CCCChHHHHHHc--CCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHH
Confidence 999999999886 468999999999999999999999999999999999999999988642 221 2469999999
Q ss_pred HHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHH
Q 020379 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (327)
Q Consensus 208 lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAiv 281 (327)
+||.|||+||+||+|.++|++|+++ .+++..++.+++.||+.|+.+|.||+.||++|+.+++.|+||+.|||+|
T Consensus 79 ~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaiv 158 (192)
T cd04398 79 LLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAII 158 (192)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHH
Confidence 9999999999999999999999876 2467889999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCHHHHH---HHHHHHHhc
Q 020379 282 MAPVIMWQKERKPEFYR---QYWNHASRS 307 (327)
Q Consensus 282 f~P~Ll~~~~~~~~~~~---~~~~~~~~~ 307 (327)
|||+|++++..+..++. ..++.++.+
T Consensus 159 f~P~l~~~~~~~~~~~~~~~~~~~~LI~~ 187 (192)
T cd04398 159 WGPTLMNAAPDNAADMSFQSRVIETLLDN 187 (192)
T ss_pred HhhhhCCCCccchhhHHHHHHHHHHHHHH
Confidence 99999999987655443 345555554
No 30
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.1e-39 Score=282.16 Aligned_cols=160 Identities=24% Similarity=0.420 Sum_probs=145.6
Q ss_pred cccCCHHHHHhhhcC---CCCCCHHHHHHHHHHHHcC-CCCcCeeeccCCHHHHHHHHHHHcCCCCCCCC---CCCChhh
Q 020379 132 VFGVPIEVTVQRQQY---GKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFD 204 (327)
Q Consensus 132 vFG~~L~~l~~~~~~---~~~VP~il~~~i~~i~~~g-l~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~---~~~d~~~ 204 (327)
+||+||++++++++. +..||.+|.+|++||+++| +.+|||||++|+...++++++.+|++.+.+.. +..|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 699999999987533 4689999999999999987 89999999999999999999999998765532 3579999
Q ss_pred hHHHHHHHHhhCCCCCCChhhHHHHhhH-------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhh
Q 020379 205 VAALAKYYLASLPEPLTTFELYDEIKGA-------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS 277 (327)
Q Consensus 205 va~lLK~fLr~LPePLl~~~ly~~~~~~-------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~n 277 (327)
+|++||.|||+||+||+|.++|+.|.++ .+++..++.++++||+.|+.+|++|+.||++|+.+++.|+||++|
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 160 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence 9999999999999999999999999764 346788999999999999999999999999999999999999999
Q ss_pred hHHHhhhcccCCCC
Q 020379 278 LAMEMAPVIMWQKE 291 (327)
Q Consensus 278 LAivf~P~Ll~~~~ 291 (327)
||+||||+|+++.+
T Consensus 161 La~vf~P~L~~~~~ 174 (190)
T cd04400 161 VCIVFSPTLNIPAG 174 (190)
T ss_pred hhhhcCCCCCCCHH
Confidence 99999999988743
No 31
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.2e-38 Score=280.26 Aligned_cols=148 Identities=26% Similarity=0.411 Sum_probs=139.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhhH
Q 020379 147 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELY 226 (327)
Q Consensus 147 ~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly 226 (327)
.+.||.+|.+|++||+++|+++|||||++|+..+++++++.+|+|....+.+..|+|++|++||.|||+||+||+|+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 46899999999999999999999999999999999999999999998777667899999999999999999999999999
Q ss_pred HHHhhH-----HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccc-----------cCCCChhhhHHHhhhcccCCC
Q 020379 227 DEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSL-----------LNKMDARSLAMEMAPVIMWQK 290 (327)
Q Consensus 227 ~~~~~~-----~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~-----------~NkM~~~nLAivf~P~Ll~~~ 290 (327)
+.|+++ .+++..++.++.+||+.|+.+|.||+.||++|++|++ .||||++|||+||||+|+|++
T Consensus 86 ~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~ 165 (206)
T cd04376 86 TAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQ 165 (206)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCC
Confidence 999876 3578899999999999999999999999999999986 799999999999999999998
Q ss_pred CCCH
Q 020379 291 ERKP 294 (327)
Q Consensus 291 ~~~~ 294 (327)
..+.
T Consensus 166 ~~~~ 169 (206)
T cd04376 166 KSGE 169 (206)
T ss_pred CCcc
Confidence 7654
No 32
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=6.6e-38 Score=276.90 Aligned_cols=148 Identities=27% Similarity=0.384 Sum_probs=137.4
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhh
Q 020379 146 YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFEL 225 (327)
Q Consensus 146 ~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~l 225 (327)
.+..||.+|.+|+++|+++|+.+|||||++|+..+++++++.+|+|......+..|+|++|++||.|||+||+||+|+++
T Consensus 13 ~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~ 92 (193)
T cd04382 13 TSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFAL 92 (193)
T ss_pred CCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHH
Confidence 46799999999999999999999999999999999999999999887764445579999999999999999999999999
Q ss_pred HHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCH
Q 020379 226 YDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKP 294 (327)
Q Consensus 226 y~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~ 294 (327)
|+.|+++ .+++..++.++..||+.|+.+|.||+.||++|++ ++.||||+.|||+||||+||+.++.++
T Consensus 93 y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~ 166 (193)
T cd04382 93 WKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP 166 (193)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc
Confidence 9999876 3467889999999999999999999999999999 999999999999999999999887654
No 33
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-37 Score=279.08 Aligned_cols=178 Identities=21% Similarity=0.300 Sum_probs=153.7
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcC--CCCc----CeeeccCCHHHHHHHHHHHcCCCCCCC----CCCCCh
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG--LNSQ----FLFKAEGDKKVIQHLVSMYNQDPNASL----PEGVNP 202 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~g--l~~e----GIFR~sg~~~~i~~L~~~~d~~~~~~~----~~~~d~ 202 (327)
||+||+.+++++ +..||.+|.+|++||+++| +..+ ||||++|+.+.+++|++.+|++...+. .+.+|+
T Consensus 1 FGv~L~~~~~~~--~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv 78 (212)
T cd04399 1 FGVDLETRCRLD--KKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEP 78 (212)
T ss_pred CCCcHHHHHhhc--CCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCH
Confidence 999999999875 4589999999999999865 4333 999999999999999999999876643 346899
Q ss_pred hhhHHHHHHHHhhCCCCCCChhhHHHHhhH------------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcccc
Q 020379 203 FDVAALAKYYLASLPEPLTTFELYDEIKGA------------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLL 270 (327)
Q Consensus 203 ~~va~lLK~fLr~LPePLl~~~ly~~~~~~------------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 270 (327)
|++|++||.|||+||+||+|+++|+.|.++ .+++..++.++..||++|+.+|++|+.||.+|++++..
T Consensus 79 ~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~ 158 (212)
T cd04399 79 STVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKM 158 (212)
T ss_pred HHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998653 45788999999999999999999999999999998766
Q ss_pred C---CCChhhhHHHhhhcccCCCCCCHHHH-----HHHHHHHHhcccccC
Q 020379 271 N---KMDARSLAMEMAPVIMWQKERKPEFY-----RQYWNHASRSSSKNM 312 (327)
Q Consensus 271 N---kM~~~nLAivf~P~Ll~~~~~~~~~~-----~~~~~~~~~~~~~~~ 312 (327)
| ||+++|||+||||+|+|+.......+ ...+++++.+..++.
T Consensus 159 ~~~~kM~~~nLa~vfgp~llr~~~~~~~~~~~~~~~~~~e~Li~~~~~iF 208 (212)
T cd04399 159 GESEEEYADKLATSLSREILRPIIESLLTIGDKHGYKFFRDLLTHKDQIF 208 (212)
T ss_pred ccccccCHHHHHHHhhhhhcCCCcccccccccHHHHHHHHHHHHhHHHhc
Confidence 6 69999999999999999987654322 356778877765544
No 34
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-37 Score=275.26 Aligned_cols=170 Identities=25% Similarity=0.357 Sum_probs=145.3
Q ss_pred ccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCC-CCCChhhhHHHHHH
Q 020379 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKY 211 (327)
Q Consensus 133 FG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~-~~~d~~~va~lLK~ 211 (327)
||.+|.+ .+++ .|.+|++||++ |+++|||||++|+..++++|++.+|+|...++. ..+|+|++|++||.
T Consensus 1 ~~~~~~~--------~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~ 70 (208)
T cd04392 1 FGAPLTE--------EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKG 70 (208)
T ss_pred CCCCccc--------cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHH
Confidence 7877763 3455 67799999998 999999999999999999999999999887664 35799999999999
Q ss_pred HHhhCCCCCCChhhHHHHhhHH------------------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCC
Q 020379 212 YLASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKM 273 (327)
Q Consensus 212 fLr~LPePLl~~~ly~~~~~~~------------------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 273 (327)
|||+||+||+|.++|+.|+.+. .++..++.++.+||++|+.+|+||+.||++|+++++.|||
T Consensus 71 flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 150 (208)
T cd04392 71 FLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKM 150 (208)
T ss_pred HHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999986532 2467888999999999999999999999999999999999
Q ss_pred ChhhhHHHhhhcccCCCCCCHHHHH-------HHHHHHHhcccccC
Q 020379 274 DARSLAMEMAPVIMWQKERKPEFYR-------QYWNHASRSSSKNM 312 (327)
Q Consensus 274 ~~~nLAivf~P~Ll~~~~~~~~~~~-------~~~~~~~~~~~~~~ 312 (327)
|+.|||+||||+|+|+++.++..++ ..+..++.+...+.
T Consensus 151 ~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF 196 (208)
T cd04392 151 SADNLALLFTPHLICPRNLTPEDLHENAQKLNSIVTFMIKHSQKLF 196 (208)
T ss_pred CHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999988877553 33445555444433
No 35
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.4e-37 Score=267.93 Aligned_cols=159 Identities=26% Similarity=0.423 Sum_probs=142.3
Q ss_pred cCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCC-CC-CCCCCChhhhHHHHHH
Q 020379 134 GVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-AS-LPEGVNPFDVAALAKY 211 (327)
Q Consensus 134 G~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~-~~-~~~~~d~~~va~lLK~ 211 (327)
|.+|+.... .+..||.+|.+|++||+++|+.+|||||++|+...++++++.+|.+.. .. .++.+|+|++|++||.
T Consensus 2 ~~~l~~~~~---~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~ 78 (184)
T cd04385 2 GPALEDQQL---TDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKR 78 (184)
T ss_pred CccHHHhhh---CCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHH
Confidence 666765433 467999999999999999999999999999999999999999987642 22 2456899999999999
Q ss_pred HHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhc
Q 020379 212 YLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPV 285 (327)
Q Consensus 212 fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~ 285 (327)
|||+||+||||.++|++|+++ .+++..++.++..||++|+.+|.+++.||++|+++++.|||+++|||+||||+
T Consensus 79 yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ 158 (184)
T cd04385 79 FLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPT 158 (184)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccc
Confidence 999999999999999999876 34678899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHH
Q 020379 286 IMWQKERKPE 295 (327)
Q Consensus 286 Ll~~~~~~~~ 295 (327)
|+|+++.+..
T Consensus 159 ll~~~~~~~~ 168 (184)
T cd04385 159 LFQTDEHSVG 168 (184)
T ss_pred cCCCCccchh
Confidence 9999976433
No 36
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-36 Score=269.99 Aligned_cols=147 Identities=27% Similarity=0.383 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHH-HcCC----CCCCCCC-CCChhhhHHHHHHHHhhCCCCCCC
Q 020379 149 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSM-YNQD----PNASLPE-GVNPFDVAALAKYYLASLPEPLTT 222 (327)
Q Consensus 149 ~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~-~d~~----~~~~~~~-~~d~~~va~lLK~fLr~LPePLl~ 222 (327)
..+.+|.+|++||+++|+++|||||++|+...++++++. +|.+ ...++.. ..|+|++|++||+|||+||+||+|
T Consensus 27 ~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 27 IGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred ccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 455689999999999999999999999999999999875 5654 2234433 579999999999999999999999
Q ss_pred hhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCHH
Q 020379 223 FELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295 (327)
Q Consensus 223 ~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~~ 295 (327)
+++|+.|+++ .+++..++.++..||++|+.+|++|+.||++|+++++.|||++.|||+||||+|+|++..+..
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~~ 185 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETVA 185 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccHH
Confidence 9999999876 356889999999999999999999999999999999999999999999999999999877653
No 37
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=2.5e-36 Score=272.28 Aligned_cols=169 Identities=21% Similarity=0.333 Sum_probs=153.2
Q ss_pred cCCCCCCcccCCHHHHHhhhc--------------------CCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHH----
Q 020379 125 KGVASTDVFGVPIEVTVQRQQ--------------------YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKV---- 180 (327)
Q Consensus 125 ~~~~~~~vFG~~L~~l~~~~~--------------------~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~---- 180 (327)
++...+++||.+|++|+.... ....||.+|.+|++||+++|+.+|||||++|+...
T Consensus 5 ~~~~~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~ 84 (220)
T cd04380 5 TGVYLPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGEL 84 (220)
T ss_pred eeeEecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHH
Confidence 345567899999999986221 23589999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHhhH-HHHHHHHHHHHh-hcchhhHHHHHHHH
Q 020379 181 IQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-RSSIHAMRNTLK-KLSNVNFMTLEYVT 258 (327)
Q Consensus 181 i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~-~~~i~~l~~ll~-~LP~~n~~~L~~L~ 258 (327)
++++++.+|+|.... ...|+|++|++||.|||+||+||+|+++|+.++++ .+..+.++++++ .||++|+.+|.||+
T Consensus 85 i~~l~~~ld~~~~~~--~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~ 162 (220)
T cd04380 85 LAEIRDALDTGSPFN--SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLC 162 (220)
T ss_pred HHHHHHHHhCCCCCC--CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 999999999997765 56899999999999999999999999999999988 356678899999 99999999999999
Q ss_pred HHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCHH
Q 020379 259 ALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295 (327)
Q Consensus 259 ~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~~ 295 (327)
.||++|+++++.|+|+++|||+||||+|+|++..++.
T Consensus 163 ~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~~ 199 (220)
T cd04380 163 SFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGG 199 (220)
T ss_pred HHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccch
Confidence 9999999999999999999999999999999988764
No 38
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=100.00 E-value=4.6e-33 Score=241.82 Aligned_cols=147 Identities=33% Similarity=0.573 Sum_probs=138.3
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCC-CCCCCChhhhHHHHHHHHhhCCCCCCChhhHH
Q 020379 149 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYD 227 (327)
Q Consensus 149 ~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~-~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~ 227 (327)
.||.++..|++||+++|+++|||||++|+..+++++++.+|++...+ ....+|+|++|++||.|||+||+||+|.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 69999999999999999999999999999999999999999998766 35679999999999999999999999999999
Q ss_pred HHhhHH------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCHH
Q 020379 228 EIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE 295 (327)
Q Consensus 228 ~~~~~~------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~~ 295 (327)
.++++. +++..++.++..||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|+++++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~ 155 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVA 155 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHH
Confidence 998763 35789999999999999999999999999999999999999999999999999999988754
No 39
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.98 E-value=1.5e-32 Score=266.52 Aligned_cols=161 Identities=27% Similarity=0.390 Sum_probs=149.5
Q ss_pred CCCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCC--CCCCCCChhhh
Q 020379 128 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDV 205 (327)
Q Consensus 128 ~~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~--~~~~~~d~~~v 205 (327)
....||||||..++++ ++..+|.+|.+++.||+++|++++||||++|.+++|+.|++.++...+. ..++....|++
T Consensus 296 kd~~vFGVPL~vll~r--tG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~Dv 373 (674)
T KOG2200|consen 296 KDGGVFGVPLTVLLQR--TGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDV 373 (674)
T ss_pred CCCceeecCceeeecc--CCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHH
Confidence 3678999999999986 5779999999999999999999999999999999999999999876554 44667889999
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhH
Q 020379 206 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 279 (327)
Q Consensus 206 a~lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 279 (327)
|.+||+|||+||+||+|.++.+.|..+ .+++++++.+|-.||.+|+++|+.|+.||++|+.+++.|+||+.|||
T Consensus 374 AdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nls 453 (674)
T KOG2200|consen 374 ADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLS 453 (674)
T ss_pred HHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhh
Confidence 999999999999999999999999887 46899999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCC
Q 020379 280 MEMAPVIMWQK 290 (327)
Q Consensus 280 ivf~P~Ll~~~ 290 (327)
+||||+||...
T Consensus 454 vcmAPsLF~l~ 464 (674)
T KOG2200|consen 454 VCMAPSLFHLN 464 (674)
T ss_pred hhhcchHHhhc
Confidence 99999999754
No 40
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.98 E-value=1.4e-31 Score=230.37 Aligned_cols=143 Identities=37% Similarity=0.585 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHh
Q 020379 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIK 230 (327)
Q Consensus 151 P~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~ 230 (327)
|.+|.+|++||+++|+.+|||||++|+...++.+++.++.+.........|+|++|+++|.|||+||+||+|.+.|+.++
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999876545678999999999999999999999999999998
Q ss_pred hHH------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCC
Q 020379 231 GAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (327)
Q Consensus 231 ~~~------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~ 293 (327)
.+. .++..++.++..||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence 874 478999999999999999999999999999999999999999999999999999999876
No 41
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.97 E-value=5.9e-32 Score=229.20 Aligned_cols=142 Identities=36% Similarity=0.540 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCC-CCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHH
Q 020379 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYDEI 229 (327)
Q Consensus 151 P~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~-~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~ 229 (327)
|.+|..|++||+++|+.++||||++|+..+++++++.++.+.... ..+.+|+|++|++||.||++||+||++.++|+.+
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 899999999999999999999999999999999999999998764 5567999999999999999999999999999999
Q ss_pred hhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCC
Q 020379 230 KGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKER 292 (327)
Q Consensus 230 ~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~ 292 (327)
.++ .++++.++.++..||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+|+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred hhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 954 457899999999999999999999999999999999999999999999999999998864
No 42
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=4.5e-32 Score=278.58 Aligned_cols=172 Identities=26% Similarity=0.356 Sum_probs=152.3
Q ss_pred CCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCC---CCC--CCCCChhh
Q 020379 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN---ASL--PEGVNPFD 204 (327)
Q Consensus 130 ~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~---~~~--~~~~d~~~ 204 (327)
-++|||+|.+..- ....+.||.+|..|+..+|.+||++.||||++|+.+.|..|++.+|.+.- ++. ....|+++
T Consensus 1155 ~~~~GVrl~dCP~-~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNV 1233 (1973)
T KOG4407|consen 1155 QPVLGVRLADCPT-GSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNV 1233 (1973)
T ss_pred CcccccccccCCc-ccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHH
Confidence 3599999987432 22457899999999999999999999999999999999999999998742 222 22469999
Q ss_pred hHHHHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhh
Q 020379 205 VAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSL 278 (327)
Q Consensus 205 va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nL 278 (327)
|.+|||.|||.|||||+|.++|..|+++ -+++..++++|..||.+||+||++|+.||.+|+.|+++|||-++||
T Consensus 1234 VSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNL 1313 (1973)
T KOG4407|consen 1234 VSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNL 1313 (1973)
T ss_pred HHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccce
Confidence 9999999999999999999999999998 3689999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCHHHHHHHHH
Q 020379 279 AMEMAPVIMWQKERKPEFYRQYWN 302 (327)
Q Consensus 279 Aivf~P~Ll~~~~~~~~~~~~~~~ 302 (327)
||+|||+|+|+++++...+-.++.
T Consensus 1314 Ai~FGPsiVRts~Dnm~tmVthM~ 1337 (1973)
T KOG4407|consen 1314 AIMFGPSIVRTSDDNMATMVTHMS 1337 (1973)
T ss_pred eEEeccceeccCCccHHHHhhcch
Confidence 999999999999998776554433
No 43
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-32 Score=271.70 Aligned_cols=164 Identities=26% Similarity=0.484 Sum_probs=144.2
Q ss_pred CCCCCcccCCHHH----HHhhhcCCCCCCHHHHHHHHHHH-HcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCC---CC
Q 020379 127 VASTDVFGVPIEV----TVQRQQYGKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL---PE 198 (327)
Q Consensus 127 ~~~~~vFG~~L~~----l~~~~~~~~~VP~il~~~i~~i~-~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~---~~ 198 (327)
..+++|||.++.. ..+++ ...+|.||++|++||+ .+|+++|||||++|+...|+.|++.||.+-+.++ .+
T Consensus 894 ~~qTgIFG~~~~~kisv~t~~n--~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~ 971 (1112)
T KOG4269|consen 894 VKQTGIFGLPLNVKISVVTKRN--VSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDS 971 (1112)
T ss_pred ceeceeccccceeeEeeeeeec--ccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccc
Confidence 3467899966553 33333 3589999999999999 7999999999999999999999999998844332 34
Q ss_pred CCChhhhHHHHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCC
Q 020379 199 GVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNK 272 (327)
Q Consensus 199 ~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 272 (327)
+.|+|+||++||+|||+||+||++.++|..|... ......+..+|..||++|..++.+|+.||+||++++.+||
T Consensus 972 E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNK 1051 (1112)
T KOG4269|consen 972 EMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNK 1051 (1112)
T ss_pred cccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhccccc
Confidence 6899999999999999999999999999999764 3456788999999999999999999999999999999999
Q ss_pred CChhhhHHHhhhcccCCCCC
Q 020379 273 MDARSLAMEMAPVIMWQKER 292 (327)
Q Consensus 273 M~~~nLAivf~P~Ll~~~~~ 292 (327)
|+.+||||||||+|.+|.+.
T Consensus 1052 MnlrNlciVFsPTLniPse~ 1071 (1112)
T KOG4269|consen 1052 MNLRNLCIVFSPTLNIPSEI 1071 (1112)
T ss_pred ccccceeeeecccccCcHHh
Confidence 99999999999999998864
No 44
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=7e-31 Score=261.07 Aligned_cols=162 Identities=25% Similarity=0.417 Sum_probs=151.2
Q ss_pred CCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCC--CChhhhH
Q 020379 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG--VNPFDVA 206 (327)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~--~d~~~va 206 (327)
...+||++|+.+|+++ +..||.+|..|++.|+..|++++||||++|+...|++|+.++|++...++.+. .|+|+|+
T Consensus 453 ~~~vFGs~Lealc~rE--~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai~ 530 (650)
T KOG1450|consen 453 FDKVFGSPLEALCQRE--NGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAIT 530 (650)
T ss_pred cCcccCccHHHHhhcc--CCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHHH
Confidence 4789999999999986 56999999999999999999999999999999999999999997777666554 7999999
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHhhHH------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHH
Q 020379 207 ALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM 280 (327)
Q Consensus 207 ~lLK~fLr~LPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAi 280 (327)
++||.|||+||+||++..+...|.++. .+....++++..||.+|+.||+||+.||.+|.+|++.|||+.+||||
T Consensus 531 galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaI 610 (650)
T KOG1450|consen 531 GALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAI 610 (650)
T ss_pred HHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEE
Confidence 999999999999999999999999873 46788999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCC
Q 020379 281 EMAPVIMWQKER 292 (327)
Q Consensus 281 vf~P~Ll~~~~~ 292 (327)
||||+|+.+-..
T Consensus 611 VfgpTl~~~~~~ 622 (650)
T KOG1450|consen 611 VFGPTLIKPEQE 622 (650)
T ss_pred Eecccccccccc
Confidence 999999996655
No 45
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-30 Score=257.56 Aligned_cols=166 Identities=32% Similarity=0.480 Sum_probs=147.0
Q ss_pred CCCCCcccCCHHHHHhhh-cCCCCCCHHHHHHHH-HHH-HcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChh
Q 020379 127 VASTDVFGVPIEVTVQRQ-QYGKPVPHILVKCAD-YLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPF 203 (327)
Q Consensus 127 ~~~~~vFG~~L~~l~~~~-~~~~~VP~il~~~i~-~i~-~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~ 203 (327)
.....+||++++.+-... ..+..||.++.-..+ +++ +.|+..|||||++|....++.+|+++|.|...... ..|||
T Consensus 141 s~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~-~iDvH 219 (577)
T KOG4270|consen 141 SASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL-YIDVH 219 (577)
T ss_pred cchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc-cCCHH
Confidence 345689999988765332 234457999998888 665 57899999999999999999999999998876655 68999
Q ss_pred hhHHHHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhh
Q 020379 204 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARS 277 (327)
Q Consensus 204 ~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~n 277 (327)
++|++||.||||||+|++++++|++|+.+ +++.+.++.++++||+.|+..|.|++.||+.|++++..||||++|
T Consensus 220 ~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~N 299 (577)
T KOG4270|consen 220 CLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARN 299 (577)
T ss_pred HHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhh
Confidence 99999999999999999999999998865 457889999999999999999999999999999999999999999
Q ss_pred hHHHhhhcccCCCCCC
Q 020379 278 LAMEMAPVIMWQKERK 293 (327)
Q Consensus 278 LAivf~P~Ll~~~~~~ 293 (327)
||+||||+|+|++++-
T Consensus 300 lAiV~gPNl~~~~~p~ 315 (577)
T KOG4270|consen 300 LAIVFGPNLLWMKDPL 315 (577)
T ss_pred ceeEecCCccccCChH
Confidence 9999999999999843
No 46
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.96 E-value=5.6e-30 Score=270.68 Aligned_cols=203 Identities=21% Similarity=0.354 Sum_probs=181.7
Q ss_pred cccccchhhcCccchhHHHHHhhhcchhhHhhHHHhhcCCCCCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCC
Q 020379 88 FSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLN 167 (327)
Q Consensus 88 ~s~l~~~v~~~~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~ 167 (327)
+..|..++++.+..|++|...||++|.......|+..+..... .||.+|.+++.++ +..||.++.+|+.+|+.+|+.
T Consensus 559 c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~-~fG~~l~~~~~~e--~~~vP~i~~~c~~~ie~~~lr 635 (918)
T KOG1453|consen 559 CRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRP-LFGVSLSELARYE--PSTVPFILKKCLREIEAHLLR 635 (918)
T ss_pred cccccccchhhhcccceeeeeccccchhhccccCccccccccc-cccHHHHHhhccC--CCCCCHHHHHHHHHHHHhhhh
Confidence 3445567888889999999999999988776666655444444 9999999998865 569999999999999999999
Q ss_pred CcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHhhHH------------HH
Q 020379 168 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------------SS 235 (327)
Q Consensus 168 ~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~~------------~~ 235 (327)
+|||||++|...+++.|...++.+.......+.|+|++++++|+|||+||+||++++.|+.|+++. +.
T Consensus 636 ~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~ 715 (918)
T KOG1453|consen 636 VEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEP 715 (918)
T ss_pred ccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHHHhccccccccchHHHHHhhhcccccccccccccc
Confidence 999999999999999999999998866666779999999999999999999999999999998762 26
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCC
Q 020379 236 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (327)
Q Consensus 236 i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~ 293 (327)
+..+..++..||+.|+.+|.+|+.||.+|+.++..|+|++.|||+||||+|+|+++..
T Consensus 716 ~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d~~ 773 (918)
T KOG1453|consen 716 LRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPDGT 773 (918)
T ss_pred chhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCCCc
Confidence 7889999999999999999999999999999999999999999999999999999765
No 47
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.96 E-value=8.3e-29 Score=235.30 Aligned_cols=206 Identities=20% Similarity=0.254 Sum_probs=166.9
Q ss_pred ccccccchhhcCc--cchhHHHHHhhhcchhhHhhHHHhhc-CCCCCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 020379 87 GFSETKDKVAVGK--IKVEEAAKKTAQKSKTILTDIERWQK-GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVL 163 (327)
Q Consensus 87 ~~s~l~~~v~~~~--~~~~e~~~~~~~k~~~~~~~~~~~~~-~~~~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~ 163 (327)
.+-.|...|.++. ++|.+|...+|..|...++--|-.+- +...+.-=| -|.+.+.+ ....||.+|..|+.+||.
T Consensus 299 ~Cv~C~krIkfg~~sLkCRdC~v~~H~~Cr~~l~lpCIP~l~g~~~k~geg-~L~DF~~s--~aPMIPalVVHCVneIEa 375 (604)
T KOG3564|consen 299 NCVPCGKRIKFGKLSLKCRDCPVVCHIECRDKLTLPCIPTLIGPPVKTGEG-MLADFAPS--TAPMIPALVVHCVNEIEA 375 (604)
T ss_pred cchhhhhhhhhhhcccccccCCeeechhHHhcCCCCCcCccCCCCCccCce-ehhhhccc--ccccchHHHHHHHHHHHH
Confidence 4566777788775 78888888777776554432211111 111111112 24555443 245999999999999999
Q ss_pred cCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHhhHH------HHHH
Q 020379 164 SGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------SSIH 237 (327)
Q Consensus 164 ~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~~------~~i~ 237 (327)
+||.+|||||++|....+++|++.+-++.........|+|++|+++|.|||+|-|||||+....+|+.+. ..+.
T Consensus 376 RGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~rdf~eAa~~tD~dn~~~ 455 (604)
T KOG3564|consen 376 RGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRRDFMEAAEITDEDNSIL 455 (604)
T ss_pred ccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHHHHHHHhcCCCchhHHH
Confidence 9999999999999999999999999999887666678999999999999999999999999999999873 3577
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCHHH
Q 020379 238 AMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296 (327)
Q Consensus 238 ~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~~~ 296 (327)
++.+.+..||.+|+.||.|||-|+++|++ +..|||+..|||.+|||+++..+.+++..
T Consensus 456 aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~pd~ 513 (604)
T KOG3564|consen 456 ALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNPDQ 513 (604)
T ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCccH
Confidence 88899999999999999999999999888 89999999999999999999977766553
No 48
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=3.1e-27 Score=226.24 Aligned_cols=142 Identities=30% Similarity=0.481 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCC----CCCCCCCCChhhhHHHHHHHHhhCCCCCCCh
Q 020379 148 KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP----NASLPEGVNPFDVAALAKYYLASLPEPLTTF 223 (327)
Q Consensus 148 ~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~----~~~~~~~~d~~~va~lLK~fLr~LPePLl~~ 223 (327)
..||.+|.+|+.||+++|+++.||||+.|+..++++|++.+|.+. ....++++++|++|++||.|||+||+||||.
T Consensus 92 ~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~ 171 (412)
T KOG2710|consen 92 GQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPL 171 (412)
T ss_pred eeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCH
Confidence 589999999999999999999999999999999999999999984 5566788999999999999999999999999
Q ss_pred hhHHHHhhH-----H-HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccC-----------CCChhhhHHHhhhcc
Q 020379 224 ELYDEIKGA-----R-SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLN-----------KMDARSLAMEMAPVI 286 (327)
Q Consensus 224 ~ly~~~~~~-----~-~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~N-----------kM~~~nLAivf~P~L 286 (327)
++|+.|+.. . +++..++.++..||+.|+.+|.+++.||+.++.|++.| +|+++|||+||+|+|
T Consensus 172 ~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~i 251 (412)
T KOG2710|consen 172 ELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNI 251 (412)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchh
Confidence 999999875 3 78899999999999999999999999999999999988 999999999999999
Q ss_pred cCC
Q 020379 287 MWQ 289 (327)
Q Consensus 287 l~~ 289 (327)
+..
T Consensus 252 L~k 254 (412)
T KOG2710|consen 252 LYK 254 (412)
T ss_pred hhc
Confidence 994
No 49
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=2.2e-25 Score=223.34 Aligned_cols=162 Identities=24% Similarity=0.340 Sum_probs=144.6
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCC-C-CCCCChhhhHHHHHHHHhhCCCCCCC
Q 020379 145 QYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-L-PEGVNPFDVAALAKYYLASLPEPLTT 222 (327)
Q Consensus 145 ~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~-~-~~~~d~~~va~lLK~fLr~LPePLl~ 222 (327)
-.++.||.||..||.|+.+.|+..|||||++|...++..|.+.+.++.... + ..+..+.+|+++||+|||+|++||+|
T Consensus 722 Ls~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft 801 (1186)
T KOG1117|consen 722 LSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFT 801 (1186)
T ss_pred ccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccc
Confidence 356799999999999999999999999999999999999999998877532 2 23467899999999999999999999
Q ss_pred hhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCHHH
Q 020379 223 FELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296 (327)
Q Consensus 223 ~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~~~ 296 (327)
.++|..|+++ .+++....++|..||..|+.||..|+.||++|..+++.|+|+++|||+||||+||.....+...
T Consensus 802 ~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqdehe 881 (1186)
T KOG1117|consen 802 KELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQDEHE 881 (1186)
T ss_pred hhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCchhh
Confidence 9999999987 4678999999999999999999999999999999999999999999999999999999887654
Q ss_pred HHHHHHHHHhc
Q 020379 297 YRQYWNHASRS 307 (327)
Q Consensus 297 ~~~~~~~~~~~ 307 (327)
++ ++++++.+
T Consensus 882 vn-VledLing 891 (1186)
T KOG1117|consen 882 VN-VLEDLING 891 (1186)
T ss_pred hh-HHHHHhcC
Confidence 43 56666553
No 50
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=99.92 E-value=2.1e-25 Score=216.37 Aligned_cols=161 Identities=24% Similarity=0.302 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCC-----CCCCCCCCChhhhHHHHHHHHhhCCCCCCChhhH
Q 020379 152 HILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDVAALAKYYLASLPEPLTTFELY 226 (327)
Q Consensus 152 ~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~-----~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly 226 (327)
.+|.+||+.|+.+|++++|+||..|...+|++|...+-.-. +.+..+.+|+-+|++.||.|||.|||||+++++.
T Consensus 390 ~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LH 469 (812)
T KOG1451|consen 390 EFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELH 469 (812)
T ss_pred HHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHH
Confidence 58899999999999999999999999999999988663221 2223356789999999999999999999999999
Q ss_pred HHHhhHH------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCHHHHHH-
Q 020379 227 DEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQ- 299 (327)
Q Consensus 227 ~~~~~~~------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~~~~~~- 299 (327)
..|+.+. -++.+++.++-+||.-|+..|..|+.||..|+.|+..|.||+.||++||||+|+|+.+++-.-+++
T Consensus 470 k~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMdI 549 (812)
T KOG1451|consen 470 KVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMDI 549 (812)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHcc
Confidence 9999873 489999999999999999999999999999999999999999999999999999999988664443
Q ss_pred -----HHHHHHhcccccC
Q 020379 300 -----YWNHASRSSSKNM 312 (327)
Q Consensus 300 -----~~~~~~~~~~~~~ 312 (327)
+++=+|.+-.|+.
T Consensus 550 KFQNIVVEILIEnyeKIF 567 (812)
T KOG1451|consen 550 KFQNIVVEILIENYEKIF 567 (812)
T ss_pred hhhhhhHHHHHhhhHHHh
Confidence 4666677666665
No 51
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.86 E-value=1.9e-21 Score=177.42 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=141.0
Q ss_pred CCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCC-CC--CCCChhhh
Q 020379 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LP--EGVNPFDV 205 (327)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~-~~--~~~d~~~v 205 (327)
-.++||.+|+.+++|+ ...-|.++.+|+++||++|++.-|+|+++|+...-+-|++.|+.+.... +- .--|.+.|
T Consensus 181 lrgvfG~~L~~lV~RE--~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvI 258 (442)
T KOG1452|consen 181 LRGVFGISLSRLVQRE--PESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVI 258 (442)
T ss_pred cccccchhhHhHhhcC--CCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCccee
Confidence 3458999999999987 4578899999999999999999999999999999999999998766432 21 12478889
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHhhHH---------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChh
Q 020379 206 AALAKYYLASLPEPLTTFELYDEIKGAR---------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDAR 276 (327)
Q Consensus 206 a~lLK~fLr~LPePLl~~~ly~~~~~~~---------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 276 (327)
++++|.|||||||||++...++...++. -....+-.+|..|+.++..+|.+++.||..|..+|+.|+|++.
T Consensus 259 tg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~ 338 (442)
T KOG1452|consen 259 TGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPT 338 (442)
T ss_pred ecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHH
Confidence 9999999999999999999988877762 2466778899999999999999999999999999999999999
Q ss_pred hhHHHhhhcccCCC
Q 020379 277 SLAMEMAPVIMWQK 290 (327)
Q Consensus 277 nLAivf~P~Ll~~~ 290 (327)
.||.||||-||...
T Consensus 339 ~Ls~i~~P~L~~~~ 352 (442)
T KOG1452|consen 339 RLSLIFAPLLFFCL 352 (442)
T ss_pred HHHHHhhhhHHHhh
Confidence 99999999998654
No 52
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.78 E-value=6.7e-20 Score=185.85 Aligned_cols=156 Identities=28% Similarity=0.446 Sum_probs=141.4
Q ss_pred CCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCC-CCChhhhHH
Q 020379 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVAA 207 (327)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~-~~d~~~va~ 207 (327)
....||.+|...+.. ...||.++.+|++||+..|+.+|||||++|+......++..|.++...++.+ +..+|++|+
T Consensus 914 ~s~~~~~~l~~~~t~---~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vag 990 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTS---EKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAG 990 (1100)
T ss_pred hhhccCCcccccccC---CcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccC
Confidence 457899999988764 4689999999999999999999999999999999999999999887776543 467999999
Q ss_pred HHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHH
Q 020379 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAME 281 (327)
Q Consensus 208 lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAiv 281 (327)
.+|.|+.+||+||+|+.+...+.++ ..++..+++++..||+.|+.+++|++.||.+|+....+|.||..||+||
T Consensus 991 Alksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~ 1070 (1100)
T KOG4271|consen 991 ALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSIC 1070 (1100)
T ss_pred cchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 9999999999999999988877665 3467778999999999999999999999999999999999999999999
Q ss_pred hhhccc
Q 020379 282 MAPVIM 287 (327)
Q Consensus 282 f~P~Ll 287 (327)
|++.|+
T Consensus 1071 ~~~~~~ 1076 (1100)
T KOG4271|consen 1071 FPTLLM 1076 (1100)
T ss_pred ccchHH
Confidence 999998
No 53
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.77 E-value=4e-18 Score=150.06 Aligned_cols=144 Identities=20% Similarity=0.277 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHcCCCCcCe---eeccCCHHHHHHH-HHHHcCCCCC-CC-------CCCCChhhhHHHHHHHHhhCC
Q 020379 150 VPHILVKCADYLVLSGLNSQFL---FKAEGDKKVIQHL-VSMYNQDPNA-SL-------PEGVNPFDVAALAKYYLASLP 217 (327)
Q Consensus 150 VP~il~~~i~~i~~~gl~~eGI---FR~sg~~~~i~~L-~~~~d~~~~~-~~-------~~~~d~~~va~lLK~fLr~LP 217 (327)
|=.++..|.++|+.+|+++++| ||.+++...++.+ +..++.+... .. ....|+|+++++||.+++.||
T Consensus 6 v~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP 85 (198)
T cd04401 6 VKGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLP 85 (198)
T ss_pred HHHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCC
Confidence 3457889999999999999999 9999999999888 4555655321 11 124799999999999999999
Q ss_pred CCCCCh-hhHHHHhhHHH----HHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCC
Q 020379 218 EPLTTF-ELYDEIKGARS----SIHAMRNTLKKL--SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQK 290 (327)
Q Consensus 218 ePLl~~-~ly~~~~~~~~----~i~~l~~ll~~L--P~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~ 290 (327)
.++++. +.|..|...++ .......++..+ |+.|+.++..++.+|.+|+.|+..|+|+..+|+++|||.+|..+
T Consensus 86 ~~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 86 GSKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred CCccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 999999 99999998743 256888999887 88999999999999999999999999999999999999999988
Q ss_pred CCC
Q 020379 291 ERK 293 (327)
Q Consensus 291 ~~~ 293 (327)
+..
T Consensus 166 ~~~ 168 (198)
T cd04401 166 TGA 168 (198)
T ss_pred Ccc
Confidence 753
No 54
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.71 E-value=1.4e-17 Score=164.35 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=150.2
Q ss_pred CCCCCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhh
Q 020379 126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV 205 (327)
Q Consensus 126 ~~~~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~v 205 (327)
...+..+||.||..+|... ..|.-+.++.-++-..|..++||||..++...++++++.+|.|.++.+. -..++++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~----~lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~-~~~i~v~ 150 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHF----RLPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLK-SGEIVVD 150 (741)
T ss_pred CCCCccccCccchhhcccC----CCCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhccccccccc-ccceEEe
Confidence 4457789999999999742 4999999999999999999999999999999999999999999988763 4689999
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhH
Q 020379 206 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLA 279 (327)
Q Consensus 206 a~lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLA 279 (327)
|+++|.|||..|.-++++++|+.|... +++++.++++..+||..|..+|.+|...| -+..++.+|.|+.-|||
T Consensus 151 a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla 229 (741)
T KOG4724|consen 151 AAVDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLA 229 (741)
T ss_pred ehhhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHH
Confidence 999999999999999999999999765 56899999999999999999999999999 88999999999999999
Q ss_pred HHhhhcccCCCCCCHHHH
Q 020379 280 MEMAPVIMWQKERKPEFY 297 (327)
Q Consensus 280 ivf~P~Ll~~~~~~~~~~ 297 (327)
+|.+|++++....+....
T Consensus 230 ~cv~p~~l~~~~~~s~e~ 247 (741)
T KOG4724|consen 230 QCVNPIKLKVLTRTSSEF 247 (741)
T ss_pred HHhcchhcccccccChhh
Confidence 999999999887654433
No 55
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.67 E-value=7.8e-16 Score=137.13 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=140.8
Q ss_pred CcccCCHHHHHhhhcCCCCCCHHHHHHH--HHHHHcCCCC--cCeeeccCCHHHHHHHHHHHcCCCCCCCCC-C---CC-
Q 020379 131 DVFGVPIEVTVQRQQYGKPVPHILVKCA--DYLVLSGLNS--QFLFKAEGDKKVIQHLVSMYNQDPNASLPE-G---VN- 201 (327)
Q Consensus 131 ~vFG~~L~~l~~~~~~~~~VP~il~~~i--~~i~~~gl~~--eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~-~---~d- 201 (327)
.+||+|+-+-+.+ ++...|..+..-. +++..+-++. .|+|++++...-+...++.++..++....+ . ++
T Consensus 20 ~l~glp~Ld~vl~--~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~ 97 (235)
T cd04405 20 QLVGLPLLEELLD--PALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQ 97 (235)
T ss_pred HHcCCccHHHHhc--ccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccc
Confidence 4799987766554 3557777776555 4555444444 699999999999999999998776531111 1 11
Q ss_pred -------hhhhHHHHHHHHhhCCCCCCChhhHHHHhhH---------HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 020379 202 -------PFDVAALAKYYLASLPEPLTTFELYDEIKGA---------RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVS 265 (327)
Q Consensus 202 -------~~~va~lLK~fLr~LPePLl~~~ly~~~~~~---------~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~ 265 (327)
--++|.+++.||++|||||+|..+|+.+..+ +..+++++-++..||++||..|+.|+.||.+++
T Consensus 98 ~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va 177 (235)
T cd04405 98 HDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAA 177 (235)
T ss_pred cccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 1279999999999999999999999977654 357889999999999999999999999999999
Q ss_pred hcc-------ccCCCChhhhHHHhhhcccCCCCCCHHHHHHHHHHHHhcccccC
Q 020379 266 QKS-------LLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNM 312 (327)
Q Consensus 266 ~~s-------~~NkM~~~nLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (327)
.++ ..|+| |++..|+|+++++++-+.......+..++.+...+.
T Consensus 178 ~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~~~~~~~LV~Fmmd~~~~if 228 (235)
T cd04405 178 KNDMPRLHKEIENRM---LVKQTFSRAILCSKDLDEGLADLLVLFLMDHHQDIF 228 (235)
T ss_pred hcCccccccccchHH---HHHHHhhhHhcCccccCHHHHHHHHHHHHHcchhhh
Confidence 984 36777 999999999999998887777888888888776655
No 56
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.34 E-value=2e-12 Score=122.60 Aligned_cols=186 Identities=19% Similarity=0.244 Sum_probs=140.9
Q ss_pred CCCCCCcccCCHHHHHhhhc--CCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCC----------
Q 020379 126 GVASTDVFGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN---------- 193 (327)
Q Consensus 126 ~~~~~~vFG~~L~~l~~~~~--~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~---------- 193 (327)
|...+++-|.++..-+..++ .+...|.+....+++.+.+|.-+||++|.++.+++.++++..-+.+..
T Consensus 45 g~~~~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~ 124 (514)
T KOG4370|consen 45 GVAIKRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAA 124 (514)
T ss_pred CCcCChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHH
Confidence 44455566666655443333 356778899999999999999999999999988766666554433210
Q ss_pred ------------------------------CCCCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHhhHH------HHHH
Q 020379 194 ------------------------------ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------SSIH 237 (327)
Q Consensus 194 ------------------------------~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~~------~~i~ 237 (327)
....++++|.+||+++|.|||+||+||++.++-..|..+. ...+
T Consensus 125 ~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~ 204 (514)
T KOG4370|consen 125 GLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQN 204 (514)
T ss_pred hHHHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHH
Confidence 0112346789999999999999999999999999998763 4677
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCHHHHHHHHHHHHhcccccC
Q 020379 238 AMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNM 312 (327)
Q Consensus 238 ~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (327)
.++.++..||.+||.++.++.-|+-.|.+..-.|||++.||+|+.+|++=-+.-.-. -+--+++.+..+...|+
T Consensus 205 efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~s~r~l~-al~~h~q~lf~~v~l~~ 278 (514)
T KOG4370|consen 205 EFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQESKRGLQ-ALGLHLQTLFEMVRLMV 278 (514)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHHHHHHHH-HHHHHHHHHHhhheeee
Confidence 889999999999999999999999999999999999999999999998744332111 12334566666555555
No 57
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.27 E-value=7.2e-12 Score=127.78 Aligned_cols=147 Identities=23% Similarity=0.256 Sum_probs=128.5
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCcCeee-ccCCHHHHHHHHHHHcCCCCCCCC-CCCChhhhHHHHHHHHhhCCCC-CCC
Q 020379 146 YGKPVPHILVKCADYLVLSGLNSQFLFK-AEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKYYLASLPEP-LTT 222 (327)
Q Consensus 146 ~~~~VP~il~~~i~~i~~~gl~~eGIFR-~sg~~~~i~~L~~~~d~~~~~~~~-~~~d~~~va~lLK~fLr~LPeP-Ll~ 222 (327)
+...||.++..|+.+++.+|+..+|||| ++|....+..++.++.+|...... .+.+... |.++|.|++.|.+| .|+
T Consensus 214 ~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~ 292 (640)
T KOG3565|consen 214 YFQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFP 292 (640)
T ss_pred CcccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCc
Confidence 4678999999999999999999999999 899999999999999988444322 2233444 99999999999999 999
Q ss_pred hhhHHHHhhHH------HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCC
Q 020379 223 FELYDEIKGAR------SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (327)
Q Consensus 223 ~~ly~~~~~~~------~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~ 293 (327)
++.+..+.++. +....++.++..+|..+..++.++..|+...+..+..|.|++.|+|+||||+++..++..
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e~~ 369 (640)
T KOG3565|consen 293 FEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPEGP 369 (640)
T ss_pred cccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcccc
Confidence 99999998874 344778889999999999999999999999999999999999999999999998866543
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.85 E-value=6.2e-08 Score=94.64 Aligned_cols=145 Identities=17% Similarity=0.272 Sum_probs=118.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCee---eccCCHHHHHHHHHHH-cCCCCC---------CCCCCCChhhhHHHHHHHHhh
Q 020379 149 PVPHILVKCADYLVLSGLNSQFLF---KAEGDKKVIQHLVSMY-NQDPNA---------SLPEGVNPFDVAALAKYYLAS 215 (327)
Q Consensus 149 ~VP~il~~~i~~i~~~gl~~eGIF---R~sg~~~~i~~L~~~~-d~~~~~---------~~~~~~d~~~va~lLK~fLr~ 215 (327)
.|=.+|+.|.+.|..+|+++++|| |-.-+...++.+...+ ..+... ......++|+++++||-.+..
T Consensus 7 ev~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~R 86 (420)
T PF08101_consen 7 EVKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSR 86 (420)
T ss_pred HHHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 455678899999999999999998 6777777787766655 433322 112257999999999999999
Q ss_pred CCCCCCChhhHHHHhhHHHH----HHHHHHHH-hhcc-hhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCC
Q 020379 216 LPEPLTTFELYDEIKGARSS----IHAMRNTL-KKLS-NVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQ 289 (327)
Q Consensus 216 LPePLl~~~ly~~~~~~~~~----i~~l~~ll-~~LP-~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~ 289 (327)
||..+++++.|..|...+.. ..+...++ ..|| +.|..++.-++.+|..|+.|+..|+|+...|+..+|+-.|..
T Consensus 87 Lp~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 87 LPGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred cCCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999999887542 45555655 5564 667789999999999999999999999999999999999998
Q ss_pred CCCC
Q 020379 290 KERK 293 (327)
Q Consensus 290 ~~~~ 293 (327)
....
T Consensus 167 ~~~~ 170 (420)
T PF08101_consen 167 PDFG 170 (420)
T ss_pred CCcc
Confidence 7665
No 59
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=98.35 E-value=2.2e-07 Score=78.30 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=58.6
Q ss_pred hhhhhhhchhHhhHHHHhhhHHhh-hccchhHHHHH-HHhcCcccccchhhhhhHHhh-hhccccccccccccchhhcCc
Q 020379 23 KLREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRW-ALLQEPSTKHAVQERLISAAA-ITGMFLRRGFSETKDKVAVGK 99 (327)
Q Consensus 23 ~~~~~~~~y~~~~r~~kkNlk~l~-vhp~~~~Ks~w-~~~~~~~~~~~~~~~~iS~kf-~~k~~~~~~~s~l~~~v~~~~ 99 (327)
.+.+..+.|..|++++++||+++| +||+++.|..+ .+++ .+++.++ ..|+.|++++++|.+++...+
T Consensus 66 ~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~----------~~~~~~~~~~kv~~~~sl~~L~~~i~~~q 135 (149)
T PF13716_consen 66 SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLR----------PFVSSKFWKKKVVYVSSLSELSKHIDPSQ 135 (149)
T ss_dssp -HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTT----------TGGGGTT--TTEEEESSTCGGGGTSGGGG
T ss_pred chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhc----------ccccccccceEEEEECCHHHHHhhCCHHH
Confidence 588899999999999999999999 99999999999 5555 8889999 899999999999999999888
Q ss_pred c--chhHHHHH
Q 020379 100 I--KVEEAAKK 108 (327)
Q Consensus 100 ~--~~~e~~~~ 108 (327)
+ .++.....
T Consensus 136 L~~~lp~~~~~ 146 (149)
T PF13716_consen 136 LPESLPGVLQY 146 (149)
T ss_dssp ------HHH--
T ss_pred hcccCCCEEec
Confidence 7 65544433
No 60
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.18 E-value=1.2e-06 Score=87.79 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=123.0
Q ss_pred CCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHH----HHHcC-CCCCCCCCCCChh
Q 020379 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLV----SMYNQ-DPNASLPEGVNPF 203 (327)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~----~~~d~-~~~~~~~~~~d~~ 203 (327)
....||+||+..++.. +..|.-+.....-|.+.+..++++||..-..+-+.+-. ...+. +..++. +...+|
T Consensus 413 ~kv~fdaPlS~~c~d~---gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv-~sspv~ 488 (741)
T KOG4724|consen 413 AKVPFDAPLSVFCADQ---GKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDV-PSSPVH 488 (741)
T ss_pred hhCcCCCchhhccccc---CCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccC-CCCCch
Confidence 5678999999998753 45777666677778888999999999865544433222 12222 333443 446899
Q ss_pred hhHHHHHHHHhhCCCCCCChhhHHHHhhH------HHHHHHHHH--------HHhhcchhhHHHHHHHHHHHHHHHhccc
Q 020379 204 DVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRN--------TLKKLSNVNFMTLEYVTALLLRVSQKSL 269 (327)
Q Consensus 204 ~va~lLK~fLr~LPePLl~~~ly~~~~~~------~~~i~~l~~--------ll~~LP~~n~~~L~~L~~~L~~V~~~s~ 269 (327)
.+++++|.|+|++|..++..+...+..++ .++.++++. .....|..++.+....+.-...++.+++
T Consensus 489 taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse 568 (741)
T KOG4724|consen 489 TAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSE 568 (741)
T ss_pred HHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccc
Confidence 99999999999999999999999988776 357788887 7778888888777776666777789999
Q ss_pred cCCCChhhhHHHhhhcccCCCCC
Q 020379 270 LNKMDARSLAMEMAPVIMWQKER 292 (327)
Q Consensus 270 ~NkM~~~nLAivf~P~Ll~~~~~ 292 (327)
.+.|+..|++.|..|+...-...
T Consensus 569 ~~s~dsSn~~~csrpn~~tvd~~ 591 (741)
T KOG4724|consen 569 ETSNDSSNPGFCSRPNALTVDDV 591 (741)
T ss_pred cccccccccCCCCCccccchhhc
Confidence 99999999999998888765543
No 61
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.57 E-value=0.0019 Score=69.85 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=130.2
Q ss_pred cccCCHHHHHhhhcCCCCCCHHHHH-HHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCC--CC----CCCCChhh
Q 020379 132 VFGVPIEVTVQRQQYGKPVPHILVK-CADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SL----PEGVNPFD 204 (327)
Q Consensus 132 vFG~~L~~l~~~~~~~~~VP~il~~-~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~--~~----~~~~d~~~ 204 (327)
++|+++..+..........|.++.+ +.......|....|+||.++....+...+..+|..... +. ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 8888888763222235678888888 77888888999999999999999999999999876621 11 00224555
Q ss_pred hHHHHHHHHhhC--CCCCCChhhHHHHhhH----------------------HHHH-------HHHHHHHh----hcchh
Q 020379 205 VAALAKYYLASL--PEPLTTFELYDEIKGA----------------------RSSI-------HAMRNTLK----KLSNV 249 (327)
Q Consensus 205 va~lLK~fLr~L--PePLl~~~ly~~~~~~----------------------~~~i-------~~l~~ll~----~LP~~ 249 (327)
..+.++.++|.+ |.+....+.|..+.+. ..++ ..+..+.. .+|..
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i 621 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFI 621 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHH
Confidence 667999999999 9998888888877632 1234 67777777 89999
Q ss_pred hHHHHHHHHHHHHHHHhccccC-CCCh-hhhHHHhhh----cccCCCCCCHHHHHHHHHHHHh
Q 020379 250 NFMTLEYVTALLLRVSQKSLLN-KMDA-RSLAMEMAP----VIMWQKERKPEFYRQYWNHASR 306 (327)
Q Consensus 250 n~~~L~~L~~~L~~V~~~s~~N-kM~~-~nLAivf~P----~Ll~~~~~~~~~~~~~~~~~~~ 306 (327)
...++.++..|+.++-.....| -|+. +||..+|++ +++...+.. .+...+..-.+
T Consensus 622 ~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih--~vtsVlK~yLr 682 (918)
T KOG1453|consen 622 LKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIH--AVTSVLKLYLR 682 (918)
T ss_pred HHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChH--HHHHHHHHHHH
Confidence 9999999999999999988888 7888 999999999 555554433 33444444444
No 62
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=96.13 E-value=0.0023 Score=52.85 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=54.3
Q ss_pred hhhhhchhHhhHHHHhhhHHhh-hccchhHHHHHHHhcCcccccchhhhhhHHhhhhccccccc-cccccchhh
Q 020379 25 REAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRG-FSETKDKVA 96 (327)
Q Consensus 25 ~~~~~~y~~~~r~~kkNlk~l~-vhp~~~~Ks~w~~~~~~~~~~~~~~~~iS~kf~~k~~~~~~-~s~l~~~v~ 96 (327)
+.....+..+...|..|++.+| +||+++++..|..++ +++++++..|+.+.+. .+++.+++.
T Consensus 83 ~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~----------~~l~~~~~~ki~~~~~~~~~L~~~i~ 146 (157)
T cd00170 83 SLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVK----------PFLSEKTRKKIVFLGSDKEELLKYID 146 (157)
T ss_pred HHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHH----------HhcCHhhhhhEEEecCCHHHHHhhCC
Confidence 3556668999999999999999 999999999999999 9999999999988877 666666655
No 63
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=95.78 E-value=0.0054 Score=51.38 Aligned_cols=63 Identities=6% Similarity=0.048 Sum_probs=52.8
Q ss_pred hhhhhhhchhHhhHHHHhhhHHhh-hccchhHHHHHHHhcCcccccchhhhhhHHhhhhccccccc--cccccchh
Q 020379 23 KLREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRG--FSETKDKV 95 (327)
Q Consensus 23 ~~~~~~~~y~~~~r~~kkNlk~l~-vhp~~~~Ks~w~~~~~~~~~~~~~~~~iS~kf~~k~~~~~~--~s~l~~~v 95 (327)
..+.....+..+...|..+++.+| +||+++.++.|.+++ +++++++.+|+.+.+. .+++.+++
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~----------~~l~~~~~~ki~~~~~~~~~~L~~~i 144 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIK----------PFLDEKTREKIRFVGNDSKEELLEYI 144 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHH----------hhcChhhhccEEEeCCCCHHHHHhhC
Confidence 355666778889999999999999 999999999999999 9999999999988776 34444443
No 64
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=94.43 E-value=0.052 Score=57.31 Aligned_cols=141 Identities=14% Similarity=0.050 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHHcCCCCcC---eeeccC-CHHHHHHHHHHHcCCCCC--CCCCCCChh--hhHHHHH--HHHhhCC
Q 020379 148 KPVPHILVKCADYLVLSGLNSQF---LFKAEG-DKKVIQHLVSMYNQDPNA--SLPEGVNPF--DVAALAK--YYLASLP 217 (327)
Q Consensus 148 ~~VP~il~~~i~~i~~~gl~~eG---IFR~sg-~~~~i~~L~~~~d~~~~~--~~~~~~d~~--~va~lLK--~fLr~LP 217 (327)
..-|.+..+-+.+|+..|+..|| |-|.++ +...|+.-...|+.++.. ...+..+|| .|...++ .-||.++
T Consensus 369 d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr~~~ 448 (1100)
T KOG4271|consen 369 DGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLRQQG 448 (1100)
T ss_pred cCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhhhcc
Confidence 57899999999999999999999 888888 666666555556433322 222334788 4666666 6777777
Q ss_pred CCCCChhhHHHHhhH--------HHHHHHHHHHH-hh--cchhhHH----HHHHHHHHHHHHHhccccCCCChh-hhHHH
Q 020379 218 EPLTTFELYDEIKGA--------RSSIHAMRNTL-KK--LSNVNFM----TLEYVTALLLRVSQKSLLNKMDAR-SLAME 281 (327)
Q Consensus 218 ePLl~~~ly~~~~~~--------~~~i~~l~~ll-~~--LP~~n~~----~L~~L~~~L~~V~~~s~~NkM~~~-nLAiv 281 (327)
..+.+..-...+..+ ..++..+...+ .. .|.+|.. ++..++..+.-+..++..|.|++. ..|.|
T Consensus 449 ~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aC 528 (1100)
T KOG4271|consen 449 QQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAAC 528 (1100)
T ss_pred cccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHh
Confidence 776666544443322 23565555443 44 5877776 666677777778889999999999 99999
Q ss_pred hhh-cccC
Q 020379 282 MAP-VIMW 288 (327)
Q Consensus 282 f~P-~Ll~ 288 (327)
.+| .|++
T Consensus 529 kS~~llL~ 536 (1100)
T KOG4271|consen 529 KSPHLLLR 536 (1100)
T ss_pred cChHHHHh
Confidence 999 4666
No 65
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.85 E-value=0.0083 Score=60.12 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=99.2
Q ss_pred CCCcccCCHHHHHhhhcCCCCCCH-HHHHHHHHHHH---cC--CCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCCh
Q 020379 129 STDVFGVPIEVTVQRQQYGKPVPH-ILVKCADYLVL---SG--LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNP 202 (327)
Q Consensus 129 ~~~vFG~~L~~l~~~~~~~~~VP~-il~~~i~~i~~---~g--l~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~ 202 (327)
....||.-|..+.-. .+..||. .+.+||..++. ++ .+..|.|++..+.... .+.+. +.-.-|+
T Consensus 206 ~~~~~gl~ltr~~~~--~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~a-f~~p~di 274 (670)
T KOG1449|consen 206 SNLNCGLVLTRMEVG--LGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEA-FRWPSDI 274 (670)
T ss_pred cCccccceecceeec--cccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccc-cCCccce
Confidence 455677666655433 4678998 77788877764 22 4556777776643221 11111 1223578
Q ss_pred hhhHHHHHHHHhhCCCCCCChhhHHHHhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHh
Q 020379 203 FDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM 282 (327)
Q Consensus 203 ~~va~lLK~fLr~LPePLl~~~ly~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf 282 (327)
..+..+++.|.+.+|.|+.. ..|+.=-.....++..+-.+..+++.|+.+-.+|..||.+.+.-. .+++|++
T Consensus 275 ~v~S~d~dp~s~Q~~pp~~~-~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~I~~ 346 (670)
T KOG1449|consen 275 VVESWDMDPYSRQLPPPYPK-EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLAIVW 346 (670)
T ss_pred eeeccccChhhhhcCCCCcc-cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------ccceeec
Confidence 88899999999999999544 333322222345666777778899999999999999998887632 8999999
Q ss_pred hhcccCCCC
Q 020379 283 APVIMWQKE 291 (327)
Q Consensus 283 ~P~Ll~~~~ 291 (327)
.|+++|++.
T Consensus 347 ~~~~~r~pp 355 (670)
T KOG1449|consen 347 SPNLFRPPP 355 (670)
T ss_pred CCCCCCCCC
Confidence 999999886
No 66
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=91.66 E-value=0.03 Score=56.25 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCC
Q 020379 258 TALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERK 293 (327)
Q Consensus 258 ~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~ 293 (327)
+.||..|+.+...+.|.+.|||+||||+|+|+++-.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeie 36 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIE 36 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHH
Confidence 368999999999999999999999999999977543
No 67
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=61.77 E-value=5.4 Score=32.94 Aligned_cols=54 Identities=7% Similarity=0.162 Sum_probs=38.3
Q ss_pred HhhHHHHhhhHHhh-hccchhHHHHHHHhcCcccccchhhhhhHHhhhhccccccccc---cccchhh
Q 020379 33 EVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFS---ETKDKVA 96 (327)
Q Consensus 33 ~~~r~~kkNlk~l~-vhp~~~~Ks~w~~~~~~~~~~~~~~~~iS~kf~~k~~~~~~~s---~l~~~v~ 96 (327)
.+...|=-.++.+| +++.++.++.|.+++ ++++++...|+.+..... .+.+++.
T Consensus 91 ~~~~~yP~rl~~i~iin~p~~~~~~~~~~~----------~~l~~~~~~ki~~~~~~~~~~~l~~~i~ 148 (159)
T PF00650_consen 91 LLQDHYPERLGKIYIINAPWFFRVLWKIVK----------PFLSPKTREKIVFHSGSDWKAKLKEYID 148 (159)
T ss_dssp HHHHHSTTTEEEEEEES--TTHHHHHHHHG----------GGS-HHHHCTEEEECTTCHCHHHCCCST
T ss_pred hhcccCCccceeEEEEecChhhhhhHhHHH----------hhcCHhhheeEEEECCcccHHHHHhhCC
Confidence 33445557888999 999999999999999 999999999987764322 3445554
No 68
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=47.63 E-value=17 Score=29.27 Aligned_cols=39 Identities=10% Similarity=0.021 Sum_probs=30.0
Q ss_pred hHHHhhhccccccchhhhhhhhc------hhHhhHHHHh-hhHHhh
Q 020379 8 PWQEKASEFFSSSGSKLREAGQS------VGEVAKDAKG-NAADVA 46 (327)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~------y~~~~r~~kk-Nlk~l~ 46 (327)
-|-+.|.||+.+.++-++-|.|+ |.--||+-|| +..+|+
T Consensus 16 kiLK~AKG~~G~r~~~~r~Akq~v~ka~~yaYrdRr~rKRdFR~LW 61 (118)
T COG0292 16 KILKLAKGYRGARSRLYRVAKQAVMKALQYAYRDRRQRKRDFRKLW 61 (118)
T ss_pred HHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 36788999999999999999998 6666776654 344444
No 69
>PF10928 DUF2810: Protein of unknown function (DUF2810); InterPro: IPR021230 This is a bacterial family of uncharacterised proteins. This entry contains YibL (P0ADK8 from SWISSPROT), which comigrates with the mature 50S ribosome subunit. It either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2LF0_A.
Probab=37.02 E-value=15 Score=25.03 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=20.9
Q ss_pred ccccchhhhhhhhchhHhhHHHHhhhHHhh-hccchhH
Q 020379 17 FSSSGSKLREAGQSVGEVAKDAKGNAADVA-ERVGSAV 53 (327)
Q Consensus 17 ~~~~~~~~~~~~~~y~~~~r~~kkNlk~l~-vhp~~~~ 53 (327)
||+-=+|.+.|--- ++||.++.|. |||....
T Consensus 7 F~R~iTK~EQAdmG------kLKKsVrGLvvVHPmTal 38 (54)
T PF10928_consen 7 FSRAITKKEQADMG------KLKKSVRGLVVVHPMTAL 38 (54)
T ss_dssp EEEE--HHHHHTHH------HHHHHTTS-EEE-SSSHH
T ss_pred cchhhhHHHHHhHH------HHHhhhceeEEEechHHH
Confidence 67777787776544 8999999999 9997643
No 70
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=34.65 E-value=50 Score=32.75 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=27.3
Q ss_pred CCChhhhHHHHHHHHhhCCCCCCChhhHHHHhhH
Q 020379 199 GVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA 232 (327)
Q Consensus 199 ~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~ 232 (327)
..|+|+.++..|.|++..|||++|-++=.-+.+|
T Consensus 117 ~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~C 150 (514)
T KOG4370|consen 117 FADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSC 150 (514)
T ss_pred HHHHHHHHhHHHHhhhccCCccccccchHHHHHH
Confidence 3589999999999999999999996654444444
No 71
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=33.81 E-value=1.7e+02 Score=20.59 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=16.6
Q ss_pred hcchhhH-HHHHHHHHHHHHHHh
Q 020379 245 KLSNVNF-MTLEYVTALLLRVSQ 266 (327)
Q Consensus 245 ~LP~~n~-~~L~~L~~~L~~V~~ 266 (327)
.|.-.|+ ..|+|+..+|+.+-.
T Consensus 29 DLsIqnY~~Fl~yi~eLL~~lq~ 51 (58)
T PF12491_consen 29 DLSIQNYHMFLRYITELLKELQS 51 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777 556899999988776
No 72
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=31.40 E-value=25 Score=36.79 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=35.1
Q ss_pred hHHHh----hhccccccchhhhhhhhchhHhhHHHHhhhHHhh
Q 020379 8 PWQEK----ASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVA 46 (327)
Q Consensus 8 ~~~~~----~~~~~~~~~~~~~~~~~~y~~~~r~~kkNlk~l~ 46 (327)
.|.++ -..+|+.-|..|++|.|.|..||-.+|++|+...
T Consensus 330 lWt~~G~krL~~lLAkMGisL~~~~Q~y~~Md~~~K~~L~~~l 372 (622)
T PF02724_consen 330 LWTEKGRKRLHKLLAKMGISLKQAQQKYSYMDMELKRELREKL 372 (622)
T ss_pred hhhhhhHHHHHHHHHHhCCcHHHHcCCchhCCHHHHHHHHHHH
Confidence 57654 6789999999999999999999999999999887
No 73
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=28.87 E-value=1e+02 Score=22.62 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHh
Q 020379 236 IHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM 282 (327)
Q Consensus 236 i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf 282 (327)
++.++.....|++..+.+..|++.+...+.. |++..||...
T Consensus 4 ~~~i~~~~~~ls~~e~~Ia~yil~~~~~~~~------~si~elA~~~ 44 (77)
T PF01418_consen 4 LEKIRSQYNSLSPTEKKIADYILENPDEIAF------MSISELAEKA 44 (77)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHH-HHHHCT--------HHHHHHHC
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHH------ccHHHHHHHc
Confidence 4567777889999999999999999977765 7788887543
No 74
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=28.32 E-value=33 Score=32.27 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=28.9
Q ss_pred hccccccchhhhhhhhchhHhhHHHH--hhhHHhh
Q 020379 14 SEFFSSSGSKLREAGQSVGEVAKDAK--GNAADVA 46 (327)
Q Consensus 14 ~~~~~~~~~~~~~~~~~y~~~~r~~k--kNlk~l~ 46 (327)
.+||++.|+|+.|-.-+|.++..+.+ .|.+=+|
T Consensus 213 ~NFY~~gGSKlne~ArsY~~la~~~~~~~~~~FvW 247 (286)
T PF04556_consen 213 TNFYGSGGSKLNETARSYKELAQEIKSIDGFEFVW 247 (286)
T ss_pred EeeecCCCCcHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 57999999999999999999999988 6666666
No 75
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=27.51 E-value=47 Score=31.12 Aligned_cols=37 Identities=3% Similarity=0.161 Sum_probs=32.6
Q ss_pred HHHhhhHHhh-hccchhHHHHHHHhcCcccccchhhhhhHHhhhhccc
Q 020379 37 DAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMF 83 (327)
Q Consensus 37 ~~kkNlk~l~-vhp~~~~Ks~w~~~~~~~~~~~~~~~~iS~kf~~k~~ 83 (327)
.|=..+++++ ++..++....|.+++ ++++++...|++
T Consensus 193 ~yPe~l~~~~iIN~P~~f~~~~~~ik----------pfL~~kt~~ki~ 230 (317)
T KOG1471|consen 193 NYPERLKRIHIINAPTIFSALWKVVK----------PFLDEKTRKKIH 230 (317)
T ss_pred hCHHhhceEEEEcCchhHHHHHHHHh----------ccCCHHHHhhhe
Confidence 3447899999 999999999999999 999988888776
No 76
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=27.22 E-value=40 Score=31.05 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=21.3
Q ss_pred HhhhcchhhHhh----HHHhhcCCCCCCcccCCHHH
Q 020379 108 KTAQKSKTILTD----IERWQKGVASTDVFGVPIEV 139 (327)
Q Consensus 108 ~~~~k~~~~~~~----~~~~~~~~~~~~vFG~~L~~ 139 (327)
..|+++.+++.. +...+......++||+||++
T Consensus 210 eYHr~a~e~Le~~~p~i~~~~~~~~~k~~fg~~lee 245 (246)
T cd07618 210 DYHRKALAVIEKVLPEIQAHQDKWMEKPAFGTPLEE 245 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCccc
Confidence 445666555443 44445566788999999986
No 77
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=25.75 E-value=1.6e+02 Score=22.52 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=45.1
Q ss_pred HHhhCC-CCCCChhhHHHHhhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHh
Q 020379 212 YLASLP-EPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQ 266 (327)
Q Consensus 212 fLr~LP-ePLl~~~ly~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~ 266 (327)
+|..|= ...|+.+-|+.+.+....-+.++.++..++.-+...-.++..+|..+..
T Consensus 20 lLD~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG~~~k~~F~~iL~e~~~ 75 (85)
T cd08324 20 LVDNLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEYFLYLLQQLAD 75 (85)
T ss_pred HHHHHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 343443 3478889999888887788899999999999999999999999988876
No 78
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=23.30 E-value=1.4e+02 Score=31.22 Aligned_cols=33 Identities=6% Similarity=0.025 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHh
Q 020379 234 SSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQ 266 (327)
Q Consensus 234 ~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~ 266 (327)
+-++.++.....|++..+.+..|++.+...|..
T Consensus 342 ~l~~~I~~~~~~Lt~~E~~IA~yIl~n~~~v~~ 374 (638)
T PRK14101 342 AVFERIRQMRDALTPAERRVADLALNHPRSIIN 374 (638)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhCHHHHHh
Confidence 346778888899999999999999999987765
No 79
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=21.77 E-value=83 Score=30.15 Aligned_cols=70 Identities=6% Similarity=0.093 Sum_probs=54.9
Q ss_pred ccccchhhhhhhhchhHhhHHHHhhhHHhh-hccchhHHHHHHHhcCcccccchhhhhhHHhhhhccccccccccccchh
Q 020379 17 FSSSGSKLREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKV 95 (327)
Q Consensus 17 ~~~~~~~~~~~~~~y~~~~r~~kkNlk~l~-vhp~~~~Ks~w~~~~~~~~~~~~~~~~iS~kf~~k~~~~~~~s~l~~~v 95 (327)
||.+..-++-+..+-..|-.-|=..|-..+ +|+.++.-..|.+.+ ++|-++..+|+.+.....++.+++
T Consensus 161 fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiik----------pflDp~t~~Kv~F~~~~~~l~~~~ 230 (324)
T KOG1470|consen 161 FSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIK----------PFLDPKTASKVKFVEPKDDLSEYF 230 (324)
T ss_pred CcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhh----------hccChhhhceeEEecChhHHHhhC
Confidence 566666666666666677777778898899 999999999999999 999999888888776666544444
Q ss_pred h
Q 020379 96 A 96 (327)
Q Consensus 96 ~ 96 (327)
.
T Consensus 231 d 231 (324)
T KOG1470|consen 231 D 231 (324)
T ss_pred C
Confidence 4
No 80
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.77 E-value=69 Score=25.68 Aligned_cols=45 Identities=22% Similarity=0.104 Sum_probs=31.5
Q ss_pred CeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhC
Q 020379 170 FLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASL 216 (327)
Q Consensus 170 GIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~L 216 (327)
.=|+++|-.+++..++..+-... ...+..++..+|+=|-.++..|
T Consensus 62 enfvisG~ISqi~~i~~~iv~e~--seleqeeve~La~Plld~lkRL 106 (124)
T COG4835 62 ENFVISGRISQINQIKDRIVKEP--SELEQEEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeeEEeeehHHHHHHHhHhccCH--HHhhHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999885322 1223456777777666666664
Done!