Query 020381
Match_columns 327
No_of_seqs 190 out of 749
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.3 8.6E-12 1.9E-16 94.4 9.5 61 232-292 3-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 1.1E-11 2.4E-16 93.6 9.2 61 232-292 3-63 (64)
3 KOG4343 bZIP transcription fac 99.3 9.8E-12 2.1E-16 126.7 7.9 72 227-298 274-345 (655)
4 KOG0709 CREB/ATF family transc 99.2 1.4E-11 3E-16 124.0 6.3 80 229-315 246-325 (472)
5 KOG4005 Transcription factor X 99.2 2.4E-10 5.2E-15 107.4 11.6 78 231-308 66-143 (292)
6 KOG3584 cAMP response element 99.0 4.4E-10 9.5E-15 108.0 7.1 60 227-286 284-343 (348)
7 PF07716 bZIP_2: Basic region 99.0 2.6E-09 5.6E-14 78.6 8.8 51 232-283 3-53 (54)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 5.6E-08 1.2E-12 78.7 -6.0 59 231-289 27-85 (92)
9 KOG0837 Transcriptional activa 98.1 1.8E-05 3.8E-10 75.7 8.9 66 232-311 203-269 (279)
10 KOG4571 Activating transcripti 97.4 0.0018 3.9E-08 63.0 12.1 55 232-286 224-279 (294)
11 KOG4196 bZIP transcription fac 97.1 0.0041 8.8E-08 54.3 9.8 64 232-309 51-114 (135)
12 KOG3119 Basic region leucine z 96.8 0.0051 1.1E-07 58.9 8.5 46 238-283 198-243 (269)
13 KOG3863 bZIP transcription fac 96.5 0.0058 1.3E-07 64.5 6.7 66 234-306 490-555 (604)
14 TIGR02449 conserved hypothetic 96.3 0.047 1E-06 42.5 9.3 60 257-316 2-61 (65)
15 PF06005 DUF904: Protein of un 96.1 0.092 2E-06 41.4 10.1 58 255-312 4-68 (72)
16 PF06005 DUF904: Protein of un 95.8 0.16 3.4E-06 40.1 10.3 52 256-307 19-70 (72)
17 COG3074 Uncharacterized protei 95.3 0.16 3.5E-06 40.5 8.4 55 256-310 19-73 (79)
18 PF02183 HALZ: Homeobox associ 95.3 0.059 1.3E-06 39.0 5.6 42 266-307 2-43 (45)
19 TIGR02894 DNA_bind_RsfA transc 95.0 0.2 4.3E-06 45.3 9.5 47 263-309 98-144 (161)
20 PRK10884 SH3 domain-containing 95.0 0.7 1.5E-05 43.0 13.2 55 255-309 118-172 (206)
21 PF06156 DUF972: Protein of un 94.8 0.21 4.6E-06 42.1 8.5 47 256-302 9-55 (107)
22 PF06156 DUF972: Protein of un 94.7 0.18 4E-06 42.5 8.0 51 259-309 5-55 (107)
23 PRK13169 DNA replication intia 94.7 0.18 3.9E-06 42.9 7.9 47 256-302 9-55 (110)
24 PRK13729 conjugal transfer pil 94.6 0.095 2.1E-06 54.3 7.2 51 255-305 76-126 (475)
25 PRK10884 SH3 domain-containing 94.6 0.5 1.1E-05 44.0 11.2 48 252-299 122-169 (206)
26 TIGR02449 conserved hypothetic 94.5 0.37 8.1E-06 37.6 8.6 54 255-308 7-60 (65)
27 PRK15422 septal ring assembly 94.3 0.42 9.2E-06 38.6 8.7 55 257-311 20-74 (79)
28 PRK13169 DNA replication intia 94.1 0.34 7.5E-06 41.2 8.3 52 258-309 4-55 (110)
29 PF14197 Cep57_CLD_2: Centroso 93.9 0.61 1.3E-05 36.5 8.7 54 254-307 11-64 (69)
30 PF08614 ATG16: Autophagy prot 93.8 1.5 3.2E-05 39.8 12.5 75 231-305 113-187 (194)
31 COG4467 Regulator of replicati 93.6 0.38 8.3E-06 41.1 7.7 48 261-308 7-54 (114)
32 PF13747 DUF4164: Domain of un 93.2 2.3 5E-05 34.7 11.4 78 232-309 9-86 (89)
33 PF07989 Microtub_assoc: Micro 92.6 1.3 2.8E-05 35.2 8.9 53 257-309 2-62 (75)
34 PF10224 DUF2205: Predicted co 91.5 1.4 3.1E-05 35.6 8.1 46 258-303 19-64 (80)
35 PF11559 ADIP: Afadin- and alp 91.0 2.8 6.2E-05 36.2 10.1 71 233-303 44-114 (151)
36 PF11559 ADIP: Afadin- and alp 90.9 6.9 0.00015 33.8 12.5 37 270-306 74-110 (151)
37 PF09304 Cortex-I_coil: Cortex 90.4 4.5 9.8E-05 34.5 10.4 58 234-291 16-73 (107)
38 PF04111 APG6: Autophagy prote 90.4 4.6 0.0001 39.7 12.1 70 254-324 77-146 (314)
39 PF07888 CALCOCO1: Calcium bin 90.2 5.8 0.00013 42.2 13.3 76 234-309 150-225 (546)
40 TIGR03752 conj_TIGR03752 integ 89.8 2.1 4.6E-05 44.6 9.6 49 256-304 74-123 (472)
41 KOG4005 Transcription factor X 89.7 5.2 0.00011 38.8 11.4 79 231-309 70-151 (292)
42 PRK11637 AmiB activator; Provi 89.7 7.8 0.00017 39.0 13.5 62 248-309 68-129 (428)
43 PRK11637 AmiB activator; Provi 89.7 7.7 0.00017 39.1 13.4 63 247-309 60-122 (428)
44 PF04102 SlyX: SlyX; InterPro 89.5 2 4.4E-05 33.2 7.2 49 255-303 4-52 (69)
45 TIGR00219 mreC rod shape-deter 89.2 0.85 1.8E-05 44.1 6.0 37 263-299 67-107 (283)
46 PF09755 DUF2046: Uncharacteri 89.0 2.4 5.2E-05 42.1 8.9 52 258-309 23-74 (310)
47 smart00340 HALZ homeobox assoc 88.8 0.85 1.8E-05 33.0 4.2 28 278-305 7-34 (44)
48 COG4467 Regulator of replicati 88.7 1.9 4.1E-05 37.0 6.9 47 255-301 8-54 (114)
49 PF13851 GAS: Growth-arrest sp 88.4 16 0.00035 33.7 13.5 75 232-306 70-159 (201)
50 COG4026 Uncharacterized protei 88.2 5.4 0.00012 38.5 10.4 55 255-309 142-196 (290)
51 PRK09039 hypothetical protein; 88.1 3.4 7.5E-05 41.0 9.5 56 255-310 130-185 (343)
52 PRK04406 hypothetical protein; 87.6 5.6 0.00012 31.6 8.6 50 259-308 8-57 (75)
53 PF14197 Cep57_CLD_2: Centroso 87.5 3.5 7.6E-05 32.3 7.3 49 256-304 20-68 (69)
54 PF07106 TBPIP: Tat binding pr 87.4 3.4 7.3E-05 36.5 8.2 50 255-304 86-137 (169)
55 PF04899 MbeD_MobD: MbeD/MobD 87.3 9.5 0.00021 30.1 9.7 57 257-313 9-68 (70)
56 PF06785 UPF0242: Uncharacteri 87.3 2.9 6.3E-05 42.2 8.4 57 249-305 121-177 (401)
57 PRK02119 hypothetical protein; 87.3 5.8 0.00013 31.2 8.5 47 255-308 9-55 (73)
58 PRK15422 septal ring assembly 87.3 7.9 0.00017 31.4 9.3 49 255-303 4-52 (79)
59 PF05266 DUF724: Protein of un 87.2 10 0.00023 34.9 11.5 56 233-288 88-143 (190)
60 PF12325 TMF_TATA_bd: TATA ele 87.2 16 0.00035 31.4 11.9 38 274-311 73-117 (120)
61 PF08614 ATG16: Autophagy prot 87.1 7.7 0.00017 35.1 10.5 53 255-307 130-182 (194)
62 PF10186 Atg14: UV radiation r 86.9 20 0.00042 33.3 13.3 8 315-322 152-159 (302)
63 PF05377 FlaC_arch: Flagella a 86.2 3.5 7.5E-05 31.3 6.4 34 286-319 17-54 (55)
64 PF12325 TMF_TATA_bd: TATA ele 86.0 7.4 0.00016 33.6 9.2 16 291-306 69-84 (120)
65 PRK04325 hypothetical protein; 85.8 6.6 0.00014 31.0 8.1 46 256-308 10-55 (74)
66 TIGR02209 ftsL_broad cell divi 85.7 6 0.00013 30.7 7.9 35 269-303 24-58 (85)
67 COG1579 Zn-ribbon protein, pos 85.7 22 0.00049 34.1 13.2 77 233-309 30-115 (239)
68 PF03962 Mnd1: Mnd1 family; I 85.6 10 0.00022 34.7 10.5 49 253-302 81-129 (188)
69 KOG0977 Nuclear envelope prote 85.6 7.2 0.00016 41.5 10.7 66 248-313 35-136 (546)
70 PRK02119 hypothetical protein; 85.4 5.7 0.00012 31.3 7.6 53 257-316 4-56 (73)
71 PF11932 DUF3450: Protein of u 85.3 22 0.00049 33.3 12.9 53 251-303 52-104 (251)
72 PF10805 DUF2730: Protein of u 85.3 8.1 0.00018 32.2 8.9 13 294-306 76-88 (106)
73 PF11932 DUF3450: Protein of u 85.3 15 0.00032 34.5 11.7 45 259-303 53-97 (251)
74 PF10224 DUF2205: Predicted co 85.2 7.9 0.00017 31.3 8.4 58 252-309 5-63 (80)
75 PF15294 Leu_zip: Leucine zipp 85.2 3.2 6.9E-05 40.7 7.3 45 260-304 130-174 (278)
76 PF02183 HALZ: Homeobox associ 84.9 3.4 7.4E-05 29.9 5.6 36 273-308 2-37 (45)
77 PRK00846 hypothetical protein; 84.7 8.6 0.00019 30.9 8.4 50 260-309 11-60 (77)
78 KOG1414 Transcriptional activa 84.5 0.047 1E-06 54.9 -5.7 54 229-282 149-206 (395)
79 PHA03155 hypothetical protein; 84.4 6.8 0.00015 33.8 8.1 55 255-309 8-73 (115)
80 PF04102 SlyX: SlyX; InterPro 84.3 6.9 0.00015 30.2 7.5 51 259-309 1-51 (69)
81 KOG2391 Vacuolar sorting prote 84.2 8.5 0.00018 38.9 9.9 59 251-309 221-279 (365)
82 COG4942 Membrane-bound metallo 83.9 22 0.00049 36.8 13.0 70 234-303 38-107 (420)
83 PF12808 Mto2_bdg: Micro-tubul 83.8 3.4 7.4E-05 31.0 5.3 50 252-304 1-50 (52)
84 PRK13922 rod shape-determining 83.7 5.1 0.00011 37.9 7.9 35 264-298 71-108 (276)
85 PF07106 TBPIP: Tat binding pr 83.4 4.2 9.1E-05 35.9 6.8 50 257-306 81-132 (169)
86 PRK02793 phi X174 lysis protei 83.3 11 0.00024 29.6 8.3 47 255-308 8-54 (72)
87 PF07798 DUF1640: Protein of u 83.3 9.7 0.00021 34.1 9.2 52 259-310 48-100 (177)
88 PF05278 PEARLI-4: Arabidopsis 83.2 25 0.00054 34.4 12.4 55 254-308 206-260 (269)
89 PRK00295 hypothetical protein; 83.1 11 0.00024 29.3 8.2 47 255-308 5-51 (68)
90 COG4026 Uncharacterized protei 83.0 9.8 0.00021 36.7 9.4 52 256-307 136-187 (290)
91 PHA03162 hypothetical protein; 82.8 4.1 9E-05 36.0 6.3 59 251-309 9-82 (135)
92 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.7 19 0.00041 30.8 10.4 31 272-302 101-131 (132)
93 TIGR02894 DNA_bind_RsfA transc 82.7 9.6 0.00021 34.7 8.8 47 259-305 101-147 (161)
94 KOG3119 Basic region leucine z 82.3 8.6 0.00019 37.0 8.9 17 34-50 32-48 (269)
95 KOG3756 Pinin (desmosome-assoc 82.2 28 0.0006 35.0 12.4 20 223-242 128-147 (340)
96 PRK02793 phi X174 lysis protei 82.2 9.6 0.00021 29.9 7.6 51 259-316 5-55 (72)
97 PRK00295 hypothetical protein; 82.1 12 0.00027 29.0 8.1 48 260-314 3-50 (68)
98 PF14662 CCDC155: Coiled-coil 81.9 8.5 0.00018 36.0 8.3 50 259-308 5-54 (193)
99 PF10828 DUF2570: Protein of u 81.7 13 0.00028 31.0 8.8 65 257-321 34-98 (110)
100 KOG1414 Transcriptional activa 81.6 0.65 1.4E-05 46.8 1.1 43 233-275 284-326 (395)
101 PF01166 TSC22: TSC-22/dip/bun 81.5 1.9 4.2E-05 33.1 3.4 29 270-298 15-43 (59)
102 PF09726 Macoilin: Transmembra 81.5 22 0.00047 38.9 12.5 38 260-297 543-580 (697)
103 PF04999 FtsL: Cell division p 81.4 8.4 0.00018 30.9 7.3 51 267-317 33-85 (97)
104 PF14662 CCDC155: Coiled-coil 81.4 10 0.00023 35.4 8.8 50 257-306 10-59 (193)
105 PF12718 Tropomyosin_1: Tropom 81.4 16 0.00036 32.0 9.6 22 258-279 17-38 (143)
106 PF07888 CALCOCO1: Calcium bin 81.3 32 0.00068 36.8 13.3 10 111-120 50-59 (546)
107 PRK10803 tol-pal system protei 81.3 6.5 0.00014 37.6 7.7 50 256-305 55-104 (263)
108 PHA02562 46 endonuclease subun 81.2 22 0.00048 36.4 12.0 37 259-295 362-398 (562)
109 PF05812 Herpes_BLRF2: Herpesv 81.2 9.3 0.0002 33.2 7.8 57 253-309 1-72 (118)
110 PF04977 DivIC: Septum formati 81.1 10 0.00022 28.6 7.4 27 276-302 24-50 (80)
111 smart00338 BRLZ basic region l 80.8 7.3 0.00016 29.2 6.4 27 280-306 30-56 (65)
112 PF08826 DMPK_coil: DMPK coile 80.8 14 0.0003 28.5 7.9 44 260-303 16-59 (61)
113 KOG1962 B-cell receptor-associ 80.5 6.1 0.00013 37.4 7.0 36 264-299 174-209 (216)
114 KOG1103 Predicted coiled-coil 80.3 7.8 0.00017 39.7 8.0 67 243-309 226-292 (561)
115 PF04880 NUDE_C: NUDE protein, 80.3 3.2 6.9E-05 37.8 4.9 46 257-306 2-47 (166)
116 PRK00888 ftsB cell division pr 80.2 7.1 0.00015 32.6 6.7 27 255-281 34-60 (105)
117 KOG4797 Transcriptional regula 80.2 5.9 0.00013 34.2 6.2 29 269-297 67-95 (123)
118 PF10506 MCC-bdg_PDZ: PDZ doma 80.1 15 0.00032 28.9 7.9 51 259-309 2-52 (67)
119 PF07412 Geminin: Geminin; In 79.9 8.7 0.00019 36.0 7.8 49 268-317 124-172 (200)
120 PRK00888 ftsB cell division pr 79.9 8.1 0.00018 32.3 6.9 33 272-304 30-62 (105)
121 KOG1853 LIS1-interacting prote 79.9 34 0.00075 33.7 12.0 53 257-309 54-117 (333)
122 PRK04325 hypothetical protein; 79.8 14 0.0003 29.2 7.8 53 256-315 3-55 (74)
123 PRK04406 hypothetical protein; 79.5 14 0.0003 29.4 7.7 49 255-303 11-59 (75)
124 KOG4403 Cell surface glycoprot 79.3 18 0.00039 38.0 10.4 87 235-325 243-342 (575)
125 PF12711 Kinesin-relat_1: Kine 79.2 15 0.00033 30.2 8.1 40 267-306 22-67 (86)
126 PF00170 bZIP_1: bZIP transcri 79.1 11 0.00024 28.2 6.8 23 282-304 32-54 (64)
127 PF06810 Phage_GP20: Phage min 79.0 12 0.00026 33.3 8.1 30 255-284 34-66 (155)
128 COG3883 Uncharacterized protei 79.0 18 0.00039 35.3 9.8 56 253-308 36-91 (265)
129 PRK00736 hypothetical protein; 78.7 15 0.00034 28.4 7.7 47 255-308 5-51 (68)
130 PF04420 CHD5: CHD5-like prote 78.7 9.5 0.00021 33.9 7.4 71 255-325 40-120 (161)
131 PRK00736 hypothetical protein; 78.7 19 0.00041 28.0 8.1 47 260-313 3-49 (68)
132 PF07407 Seadorna_VP6: Seadorn 78.7 7 0.00015 39.5 7.1 32 263-296 33-64 (420)
133 PF08647 BRE1: BRE1 E3 ubiquit 78.5 35 0.00076 27.9 11.4 70 237-306 6-75 (96)
134 smart00787 Spc7 Spc7 kinetocho 78.3 37 0.00081 33.6 12.0 79 227-308 200-282 (312)
135 PF15058 Speriolin_N: Sperioli 78.3 4.2 9.1E-05 38.0 5.1 34 257-298 7-40 (200)
136 PF12777 MT: Microtubule-bindi 78.2 17 0.00038 35.8 9.8 64 256-319 229-292 (344)
137 PF04156 IncA: IncA protein; 78.2 22 0.00048 31.5 9.7 43 261-303 108-150 (191)
138 PF04156 IncA: IncA protein; 78.2 49 0.0011 29.3 12.8 61 248-308 123-183 (191)
139 PF15070 GOLGA2L5: Putative go 77.7 43 0.00093 36.2 13.1 45 251-295 118-186 (617)
140 PF05103 DivIVA: DivIVA protei 77.7 1.4 3.1E-05 36.6 1.8 47 255-301 25-71 (131)
141 PF05837 CENP-H: Centromere pr 77.6 20 0.00044 29.9 8.6 54 255-309 17-70 (106)
142 COG4942 Membrane-bound metallo 77.3 27 0.00058 36.2 11.0 58 249-306 60-117 (420)
143 PF15035 Rootletin: Ciliary ro 76.8 16 0.00036 33.4 8.5 54 255-308 67-120 (182)
144 COG3074 Uncharacterized protei 76.6 19 0.00042 28.9 7.7 48 256-303 5-52 (79)
145 PF08317 Spc7: Spc7 kinetochor 76.2 19 0.00041 35.3 9.3 9 38-46 15-23 (325)
146 PF09304 Cortex-I_coil: Cortex 76.1 50 0.0011 28.3 13.4 64 246-309 7-70 (107)
147 PF04977 DivIC: Septum formati 76.0 18 0.00039 27.3 7.4 31 251-281 20-50 (80)
148 PF09789 DUF2353: Uncharacteri 76.0 22 0.00048 35.5 9.7 47 258-304 68-114 (319)
149 PF10174 Cast: RIM-binding pro 75.7 15 0.00032 40.7 9.2 59 251-309 297-355 (775)
150 KOG0977 Nuclear envelope prote 75.7 27 0.00058 37.4 10.8 65 245-309 131-195 (546)
151 PF10473 CENP-F_leu_zip: Leuci 75.6 58 0.0013 28.9 12.3 44 237-280 34-77 (140)
152 PF10211 Ax_dynein_light: Axon 75.3 54 0.0012 30.0 11.5 42 257-298 122-163 (189)
153 PF09726 Macoilin: Transmembra 75.3 9.1 0.0002 41.8 7.5 14 296-309 487-500 (697)
154 PRK09039 hypothetical protein; 75.1 51 0.0011 32.8 12.1 6 115-120 41-46 (343)
155 KOG1962 B-cell receptor-associ 75.0 33 0.00072 32.6 10.2 44 260-303 149-192 (216)
156 PF05266 DUF724: Protein of un 74.9 62 0.0013 29.9 11.8 49 261-309 130-178 (190)
157 PRK10803 tol-pal system protei 74.7 15 0.00033 35.0 8.1 43 252-294 58-100 (263)
158 TIGR03319 YmdA_YtgF conserved 74.5 67 0.0014 33.9 13.3 8 310-317 138-145 (514)
159 PF06785 UPF0242: Uncharacteri 74.4 46 0.001 33.9 11.5 72 234-309 75-160 (401)
160 PF08317 Spc7: Spc7 kinetochor 74.1 70 0.0015 31.4 12.7 52 257-308 151-202 (325)
161 PF09744 Jnk-SapK_ap_N: JNK_SA 74.0 16 0.00036 32.8 7.6 52 258-309 92-143 (158)
162 COG2433 Uncharacterized conser 73.9 16 0.00034 39.6 8.5 55 255-309 436-493 (652)
163 PF12709 Kinetocho_Slk19: Cent 73.7 17 0.00036 30.0 6.9 8 261-268 33-40 (87)
164 PF05529 Bap31: B-cell recepto 73.3 32 0.00069 30.9 9.4 38 267-304 152-189 (192)
165 KOG2077 JNK/SAPK-associated pr 73.2 12 0.00026 40.4 7.5 52 258-309 325-376 (832)
166 KOG3335 Predicted coiled-coil 72.7 8.4 0.00018 35.6 5.5 51 232-288 89-139 (181)
167 PF00038 Filament: Intermediat 72.4 82 0.0018 30.0 12.4 42 246-287 214-255 (312)
168 PRK12704 phosphodiesterase; Pr 72.3 81 0.0018 33.3 13.4 7 310-316 144-150 (520)
169 PF04849 HAP1_N: HAP1 N-termin 72.1 29 0.00064 34.5 9.5 32 269-300 234-265 (306)
170 PF08172 CASP_C: CASP C termin 72.0 20 0.00044 34.4 8.1 41 256-303 94-134 (248)
171 PF07558 Shugoshin_N: Shugoshi 71.3 4.1 8.9E-05 29.5 2.6 29 270-298 15-43 (46)
172 PF12329 TMF_DNA_bd: TATA elem 71.2 49 0.0011 26.0 9.8 53 254-306 11-63 (74)
173 PF11180 DUF2968: Protein of u 71.1 92 0.002 29.2 12.8 78 231-309 103-180 (192)
174 KOG3650 Predicted coiled-coil 71.1 20 0.00043 30.6 6.9 41 262-302 63-103 (120)
175 PRK00846 hypothetical protein; 71.1 31 0.00067 27.8 7.7 51 254-304 12-62 (77)
176 PF14915 CCDC144C: CCDC144C pr 71.1 39 0.00086 33.6 10.0 65 243-307 181-245 (305)
177 PF08172 CASP_C: CASP C termin 70.9 22 0.00047 34.2 8.1 47 235-282 88-134 (248)
178 KOG2264 Exostosin EXT1L [Signa 70.9 32 0.00069 37.5 9.9 57 255-311 93-149 (907)
179 KOG4807 F-actin binding protei 70.9 31 0.00066 36.0 9.5 44 270-313 443-486 (593)
180 PF09728 Taxilin: Myosin-like 70.8 36 0.00079 33.5 9.8 55 255-309 244-298 (309)
181 KOG0982 Centrosomal protein Nu 70.8 55 0.0012 34.3 11.3 54 256-309 298-351 (502)
182 PF07716 bZIP_2: Basic region 70.8 12 0.00027 27.2 5.1 29 276-304 25-53 (54)
183 PHA02562 46 endonuclease subun 70.5 75 0.0016 32.6 12.4 27 280-306 217-243 (562)
184 KOG3156 Uncharacterized membra 70.5 30 0.00066 32.9 8.7 46 269-314 101-147 (220)
185 KOG0288 WD40 repeat protein Ti 70.5 91 0.002 32.6 12.7 27 254-280 47-73 (459)
186 TIGR03752 conj_TIGR03752 integ 70.4 16 0.00034 38.4 7.5 56 258-313 83-139 (472)
187 PF05278 PEARLI-4: Arabidopsis 70.4 1.1E+02 0.0025 30.0 13.2 59 257-315 202-263 (269)
188 PF00038 Filament: Intermediat 70.3 46 0.001 31.6 10.3 28 277-304 83-110 (312)
189 KOG1029 Endocytic adaptor prot 70.0 54 0.0012 36.9 11.6 22 288-309 435-456 (1118)
190 TIGR02977 phageshock_pspA phag 70.0 45 0.00098 30.8 9.8 52 255-306 99-150 (219)
191 PF12329 TMF_DNA_bd: TATA elem 69.7 53 0.0011 25.9 9.4 53 257-309 7-59 (74)
192 PF04899 MbeD_MobD: MbeD/MobD 69.7 47 0.001 26.2 8.4 28 259-286 32-59 (70)
193 PF05837 CENP-H: Centromere pr 69.7 21 0.00046 29.7 6.9 41 264-304 5-45 (106)
194 PF11365 DUF3166: Protein of u 69.6 22 0.00047 29.9 6.8 19 286-304 25-43 (96)
195 KOG0250 DNA repair protein RAD 69.1 67 0.0015 37.0 12.4 65 244-309 362-427 (1074)
196 PF10805 DUF2730: Protein of u 69.1 56 0.0012 27.2 9.3 46 255-307 49-96 (106)
197 KOG0250 DNA repair protein RAD 69.0 54 0.0012 37.7 11.7 71 238-308 362-433 (1074)
198 PF03980 Nnf1: Nnf1 ; InterPr 68.9 8.8 0.00019 31.5 4.4 31 252-282 77-107 (109)
199 PF04340 DUF484: Protein of un 68.5 19 0.0004 33.2 7.0 50 256-309 41-90 (225)
200 COG2433 Uncharacterized conser 68.4 62 0.0013 35.2 11.5 19 257-275 445-463 (652)
201 COG1579 Zn-ribbon protein, pos 68.2 75 0.0016 30.6 11.1 56 253-308 87-142 (239)
202 PF01486 K-box: K-box region; 68.2 19 0.00041 29.2 6.2 31 270-300 69-99 (100)
203 PF05377 FlaC_arch: Flagella a 68.2 22 0.00048 27.0 6.0 30 257-286 9-38 (55)
204 KOG0976 Rho/Rac1-interacting s 68.0 74 0.0016 36.1 12.1 80 230-309 101-209 (1265)
205 PF09730 BicD: Microtubule-ass 68.0 87 0.0019 34.7 12.8 47 257-303 71-117 (717)
206 PF09738 DUF2051: Double stran 67.5 37 0.0008 33.6 9.1 80 227-306 85-170 (302)
207 PF01166 TSC22: TSC-22/dip/bun 67.4 9.7 0.00021 29.4 4.0 20 256-275 22-41 (59)
208 PF04849 HAP1_N: HAP1 N-termin 67.3 52 0.0011 32.8 10.1 57 252-308 231-287 (306)
209 PRK00106 hypothetical protein; 67.2 1.2E+02 0.0026 32.4 13.3 8 310-317 159-166 (535)
210 KOG2129 Uncharacterized conser 66.9 8.9 0.00019 39.9 4.8 49 258-306 46-94 (552)
211 KOG4196 bZIP transcription fac 66.9 65 0.0014 28.6 9.5 55 254-309 46-100 (135)
212 PRK13729 conjugal transfer pil 66.9 29 0.00063 36.5 8.6 53 255-307 69-121 (475)
213 PF10211 Ax_dynein_light: Axon 66.3 1E+02 0.0022 28.2 11.2 52 252-303 124-176 (189)
214 KOG0946 ER-Golgi vesicle-tethe 65.9 65 0.0014 36.3 11.3 51 250-300 666-716 (970)
215 PF08826 DMPK_coil: DMPK coile 65.6 51 0.0011 25.4 7.7 43 266-308 15-57 (61)
216 KOG0804 Cytoplasmic Zn-finger 65.3 96 0.0021 32.8 11.8 36 274-309 387-422 (493)
217 PRK10698 phage shock protein P 64.9 81 0.0018 29.5 10.5 52 256-307 100-151 (222)
218 TIGR02209 ftsL_broad cell divi 64.9 25 0.00053 27.3 6.0 31 252-282 28-58 (85)
219 PF03980 Nnf1: Nnf1 ; InterPr 64.8 43 0.00093 27.5 7.8 32 273-304 77-108 (109)
220 KOG4571 Activating transcripti 64.7 47 0.001 33.0 9.1 56 232-287 229-287 (294)
221 PF04728 LPP: Lipoprotein leuc 64.5 62 0.0013 24.7 8.4 34 256-289 4-37 (56)
222 COG3352 FlaC Putative archaeal 64.0 57 0.0012 29.7 8.8 55 255-309 79-134 (157)
223 PF13805 Pil1: Eisosome compon 63.7 65 0.0014 31.6 9.8 71 234-309 127-199 (271)
224 KOG1318 Helix loop helix trans 63.5 53 0.0012 34.0 9.6 78 232-309 227-323 (411)
225 COG3883 Uncharacterized protei 63.3 49 0.0011 32.3 8.9 31 255-285 59-89 (265)
226 PF10146 zf-C4H2: Zinc finger- 63.2 89 0.0019 29.8 10.5 53 251-303 28-80 (230)
227 PF09325 Vps5: Vps5 C terminal 62.6 1.1E+02 0.0024 27.6 10.7 60 241-303 135-201 (236)
228 KOG4343 bZIP transcription fac 62.6 29 0.00064 37.2 7.7 31 255-285 309-339 (655)
229 PF10482 CtIP_N: Tumour-suppre 62.5 66 0.0014 28.1 8.5 56 253-308 12-67 (120)
230 PF09727 CortBP2: Cortactin-bi 62.4 1.3E+02 0.0027 28.2 11.1 46 264-309 136-181 (192)
231 PF07558 Shugoshin_N: Shugoshi 62.2 9.1 0.0002 27.7 2.9 41 237-278 4-44 (46)
232 PF00261 Tropomyosin: Tropomyo 61.9 1.1E+02 0.0024 28.6 10.8 18 292-309 171-188 (237)
233 PF04642 DUF601: Protein of un 61.7 9.9 0.00021 37.2 3.8 54 255-308 217-270 (311)
234 cd07596 BAR_SNX The Bin/Amphip 61.7 1.1E+02 0.0024 26.7 12.4 63 238-303 114-183 (218)
235 PF05335 DUF745: Protein of un 61.4 78 0.0017 29.3 9.5 59 251-309 63-121 (188)
236 PF06548 Kinesin-related: Kine 61.3 64 0.0014 34.0 9.7 55 255-309 385-474 (488)
237 TIGR03495 phage_LysB phage lys 61.1 1.2E+02 0.0026 26.9 10.4 30 274-303 66-95 (135)
238 PF05700 BCAS2: Breast carcino 60.8 48 0.001 30.8 8.2 30 279-308 178-207 (221)
239 KOG4643 Uncharacterized coiled 60.6 49 0.0011 38.0 9.3 31 253-283 528-558 (1195)
240 PF05667 DUF812: Protein of un 60.4 72 0.0016 34.4 10.3 45 256-300 336-380 (594)
241 PRK04863 mukB cell division pr 60.2 1.4E+02 0.0031 35.7 13.4 21 233-253 320-340 (1486)
242 PRK10963 hypothetical protein; 60.0 30 0.00065 32.2 6.7 45 261-309 43-87 (223)
243 COG2900 SlyX Uncharacterized p 60.0 89 0.0019 25.1 8.3 20 256-275 9-28 (72)
244 cd07596 BAR_SNX The Bin/Amphip 60.0 1.1E+02 0.0023 26.8 9.9 77 235-311 97-180 (218)
245 COG1340 Uncharacterized archae 59.9 1.8E+02 0.004 28.9 12.2 71 235-305 27-98 (294)
246 PF04111 APG6: Autophagy prote 59.9 1.4E+02 0.0029 29.5 11.5 51 252-302 61-111 (314)
247 KOG0933 Structural maintenance 59.7 1.4E+02 0.003 34.6 12.6 46 264-309 817-862 (1174)
248 PF13815 Dzip-like_N: Iguana/D 59.6 38 0.00082 28.5 6.6 7 273-279 84-90 (118)
249 PF06428 Sec2p: GDP/GTP exchan 59.6 75 0.0016 26.6 8.3 47 258-304 11-65 (100)
250 COG1842 PspA Phage shock prote 59.4 87 0.0019 29.7 9.7 48 259-306 96-143 (225)
251 PRK14127 cell division protein 59.1 76 0.0016 27.1 8.3 33 255-287 30-62 (109)
252 PF06632 XRCC4: DNA double-str 59.1 69 0.0015 32.2 9.4 14 109-122 61-74 (342)
253 PF15035 Rootletin: Ciliary ro 59.0 65 0.0014 29.5 8.5 28 260-287 86-113 (182)
254 PF11500 Cut12: Spindle pole b 59.0 82 0.0018 28.5 8.9 56 232-287 82-137 (152)
255 PF09789 DUF2353: Uncharacteri 58.9 95 0.0021 31.2 10.2 64 246-309 21-98 (319)
256 PRK11546 zraP zinc resistance 58.9 71 0.0015 28.5 8.5 58 254-311 60-117 (143)
257 PF09738 DUF2051: Double stran 58.8 1.4E+02 0.0029 29.7 11.2 51 258-308 115-165 (302)
258 PF13863 DUF4200: Domain of un 58.7 1E+02 0.0022 25.4 9.5 20 287-306 85-104 (126)
259 KOG0999 Microtubule-associated 58.4 1.2E+02 0.0027 33.0 11.4 73 231-303 114-190 (772)
260 KOG0709 CREB/ATF family transc 58.3 28 0.0006 36.6 6.6 51 231-281 252-312 (472)
261 PF02403 Seryl_tRNA_N: Seryl-t 58.3 99 0.0021 25.0 10.4 51 259-309 40-93 (108)
262 KOG0288 WD40 repeat protein Ti 58.2 1.1E+02 0.0024 32.0 10.8 45 260-304 32-76 (459)
263 PF12711 Kinesin-relat_1: Kine 58.2 59 0.0013 26.8 7.2 41 263-305 45-85 (86)
264 KOG0804 Cytoplasmic Zn-finger 58.2 95 0.0021 32.8 10.3 55 255-309 339-394 (493)
265 TIGR02231 conserved hypothetic 58.0 1.3E+02 0.0028 31.3 11.5 41 267-307 129-169 (525)
266 PF10146 zf-C4H2: Zinc finger- 57.6 67 0.0015 30.6 8.6 51 255-305 50-103 (230)
267 PF15030 DUF4527: Protein of u 57.5 2E+02 0.0043 28.3 12.6 79 231-309 12-91 (277)
268 PRK14160 heat shock protein Gr 57.2 92 0.002 29.4 9.4 47 255-301 54-100 (211)
269 KOG2129 Uncharacterized conser 57.1 72 0.0016 33.5 9.2 8 114-121 155-162 (552)
270 COG1792 MreC Cell shape-determ 57.0 34 0.00074 33.2 6.7 17 283-299 90-106 (284)
271 PF06810 Phage_GP20: Phage min 56.9 1.2E+02 0.0027 26.9 9.8 17 291-307 52-68 (155)
272 PRK12705 hypothetical protein; 56.8 2.7E+02 0.0059 29.6 13.7 7 310-316 132-138 (508)
273 COG1196 Smc Chromosome segrega 56.7 1.3E+02 0.0028 34.6 12.2 51 256-306 440-490 (1163)
274 PRK10929 putative mechanosensi 56.7 1.7E+02 0.0038 34.0 13.0 61 265-325 261-323 (1109)
275 PF06008 Laminin_I: Laminin Do 56.5 1.8E+02 0.0039 27.4 11.9 62 257-318 54-115 (264)
276 PF10473 CENP-F_leu_zip: Leuci 56.4 1.5E+02 0.0032 26.4 12.4 45 265-309 55-99 (140)
277 KOG3564 GTPase-activating prot 56.2 1E+02 0.0022 32.9 10.3 78 229-309 26-103 (604)
278 KOG0243 Kinesin-like protein [ 56.2 79 0.0017 36.4 10.1 72 238-309 414-495 (1041)
279 KOG1853 LIS1-interacting prote 56.0 1.4E+02 0.0031 29.5 10.6 33 263-295 92-124 (333)
280 PF15397 DUF4618: Domain of un 56.0 1.9E+02 0.0041 28.3 11.5 49 260-308 177-225 (258)
281 PF05600 DUF773: Protein of un 55.9 53 0.0011 34.6 8.3 47 255-301 446-492 (507)
282 KOG0995 Centromere-associated 55.9 47 0.001 35.7 7.9 45 255-299 280-324 (581)
283 PF11544 Spc42p: Spindle pole 55.6 1.1E+02 0.0024 24.8 8.5 48 258-305 8-55 (76)
284 PF05911 DUF869: Plant protein 55.6 50 0.0011 36.7 8.4 50 254-303 91-161 (769)
285 PF15619 Lebercilin: Ciliary p 55.6 85 0.0018 29.0 8.8 37 272-308 153-189 (194)
286 KOG0239 Kinesin (KAR3 subfamil 55.4 1E+02 0.0022 33.8 10.6 50 257-306 243-292 (670)
287 PF03670 UPF0184: Uncharacteri 55.4 83 0.0018 25.8 7.6 41 256-303 34-74 (83)
288 PF04859 DUF641: Plant protein 55.3 39 0.00085 29.7 6.2 41 257-297 89-129 (131)
289 PF01486 K-box: K-box region; 55.2 62 0.0013 26.2 7.0 50 228-279 46-99 (100)
290 PF10481 CENP-F_N: Cenp-F N-te 54.9 2.3E+02 0.005 28.3 12.1 51 259-309 57-121 (307)
291 PF06216 RTBV_P46: Rice tungro 54.9 69 0.0015 31.7 8.3 34 255-288 78-111 (389)
292 PRK13922 rod shape-determining 54.5 1.2E+02 0.0027 28.6 9.9 16 288-303 74-89 (276)
293 PF13815 Dzip-like_N: Iguana/D 54.3 74 0.0016 26.7 7.6 34 274-307 78-111 (118)
294 PF14817 HAUS5: HAUS augmin-li 54.2 75 0.0016 34.6 9.3 36 257-292 102-137 (632)
295 PTZ00454 26S protease regulato 53.9 55 0.0012 33.2 7.8 18 261-278 28-45 (398)
296 cd07666 BAR_SNX7 The Bin/Amphi 53.8 1.4E+02 0.0031 28.7 10.2 57 237-303 152-208 (243)
297 KOG4360 Uncharacterized coiled 53.6 58 0.0013 34.9 8.1 43 257-299 221-263 (596)
298 PF00769 ERM: Ezrin/radixin/mo 53.5 1.9E+02 0.0041 27.5 11.0 52 258-309 64-115 (246)
299 PF05700 BCAS2: Breast carcino 53.4 1.2E+02 0.0025 28.3 9.4 30 255-284 136-165 (221)
300 PF04012 PspA_IM30: PspA/IM30 53.3 1.8E+02 0.0039 26.5 10.6 43 258-300 101-143 (221)
301 KOG1103 Predicted coiled-coil 53.1 1.6E+02 0.0035 30.5 10.8 55 252-306 129-183 (561)
302 TIGR01010 BexC_CtrB_KpsE polys 53.0 1.5E+02 0.0033 29.0 10.6 12 110-121 65-76 (362)
303 KOG0980 Actin-binding protein 52.9 1.6E+02 0.0035 33.6 11.5 64 240-303 451-514 (980)
304 PF13094 CENP-Q: CENP-Q, a CEN 52.8 1.5E+02 0.0032 25.9 9.5 42 257-298 43-84 (160)
305 PF12128 DUF3584: Protein of u 52.7 1.2E+02 0.0027 35.0 11.2 50 276-326 497-547 (1201)
306 PHA03161 hypothetical protein; 52.5 1.8E+02 0.0039 26.3 10.4 70 243-314 44-113 (150)
307 PF07200 Mod_r: Modifier of ru 52.5 1.3E+02 0.0027 25.8 8.9 69 239-309 40-108 (150)
308 PF05667 DUF812: Protein of un 52.4 80 0.0017 34.1 9.1 14 112-125 239-252 (594)
309 PF04136 Sec34: Sec34-like fam 52.2 1.6E+02 0.0035 26.1 9.7 55 255-309 21-75 (157)
310 PF08537 NBP1: Fungal Nap bind 52.0 1.1E+02 0.0023 31.0 9.2 25 233-257 121-145 (323)
311 PF12777 MT: Microtubule-bindi 51.7 55 0.0012 32.3 7.3 40 243-282 230-269 (344)
312 PF14645 Chibby: Chibby family 51.5 56 0.0012 27.9 6.4 24 258-281 81-104 (116)
313 COG3879 Uncharacterized protei 51.4 65 0.0014 31.3 7.5 19 290-308 89-107 (247)
314 PF09730 BicD: Microtubule-ass 50.9 86 0.0019 34.7 9.2 34 269-302 55-88 (717)
315 PF03245 Phage_lysis: Bacterio 50.8 1.5E+02 0.0032 25.5 8.9 49 255-303 14-62 (125)
316 PF10168 Nup88: Nuclear pore c 50.8 1.3E+02 0.0028 33.3 10.5 44 259-302 562-605 (717)
317 PF11180 DUF2968: Protein of u 50.7 1.7E+02 0.0036 27.5 9.8 14 107-120 24-37 (192)
318 PF00261 Tropomyosin: Tropomyo 50.5 2.2E+02 0.0047 26.6 13.1 56 254-309 168-223 (237)
319 PF08232 Striatin: Striatin fa 50.3 1.6E+02 0.0034 25.6 9.2 40 259-298 29-68 (134)
320 PLN02678 seryl-tRNA synthetase 50.1 2.4E+02 0.0053 29.4 11.9 51 259-309 44-97 (448)
321 PRK05892 nucleoside diphosphat 50.0 1E+02 0.0022 27.5 8.1 55 255-309 11-73 (158)
322 KOG0161 Myosin class II heavy 50.0 2.2E+02 0.0049 35.1 12.9 51 259-309 1481-1538(1930)
323 PLN03188 kinesin-12 family pro 50.0 1.1E+02 0.0024 36.1 10.0 46 264-309 1175-1244(1320)
324 PF03234 CDC37_N: Cdc37 N term 49.9 1.2E+02 0.0026 27.9 8.7 28 254-281 45-72 (177)
325 PF08606 Prp19: Prp19/Pso4-lik 49.9 63 0.0014 25.8 5.9 32 278-309 10-41 (70)
326 TIGR00414 serS seryl-tRNA synt 49.8 1E+02 0.0022 31.5 9.1 51 259-309 41-95 (418)
327 KOG4807 F-actin binding protei 49.8 1.1E+02 0.0023 32.1 9.1 58 251-308 389-460 (593)
328 PLN02939 transferase, transfer 49.7 1.7E+02 0.0038 33.6 11.5 29 281-309 224-252 (977)
329 KOG1029 Endocytic adaptor prot 49.7 1.7E+02 0.0036 33.3 11.0 27 282-308 436-462 (1118)
330 PHA03011 hypothetical protein; 49.7 1.4E+02 0.0029 25.8 8.2 52 255-306 64-115 (120)
331 PF04012 PspA_IM30: PspA/IM30 49.6 1.4E+02 0.0029 27.2 9.1 50 259-308 95-144 (221)
332 PF14712 Snapin_Pallidin: Snap 49.6 1.3E+02 0.0028 23.7 9.1 35 256-290 15-49 (92)
333 PF06698 DUF1192: Protein of u 49.5 59 0.0013 25.0 5.6 25 257-281 23-47 (59)
334 TIGR02231 conserved hypothetic 49.4 3.1E+02 0.0068 28.4 12.7 38 272-309 127-164 (525)
335 KOG0995 Centromere-associated 49.1 1.7E+02 0.0037 31.7 10.7 53 257-309 275-327 (581)
336 PRK10636 putative ABC transpor 49.0 1.2E+02 0.0026 32.5 9.8 56 254-309 562-624 (638)
337 PF02388 FemAB: FemAB family; 49.0 83 0.0018 31.8 8.2 52 254-309 241-292 (406)
338 PRK05431 seryl-tRNA synthetase 48.6 2.8E+02 0.0061 28.4 12.0 50 260-309 40-92 (425)
339 PF04949 Transcrip_act: Transc 48.6 2.1E+02 0.0047 26.0 10.7 58 230-287 40-102 (159)
340 smart00787 Spc7 Spc7 kinetocho 48.5 2.9E+02 0.0062 27.4 12.7 52 257-308 146-197 (312)
341 PF07926 TPR_MLP1_2: TPR/MLP1/ 48.5 1.7E+02 0.0037 24.9 9.7 7 282-288 65-71 (132)
342 PF10226 DUF2216: Uncharacteri 48.4 2.4E+02 0.0052 26.6 10.9 80 230-309 19-120 (195)
343 PF06210 DUF1003: Protein of u 48.3 1.2E+02 0.0025 25.7 7.8 50 239-293 55-104 (108)
344 KOG4360 Uncharacterized coiled 47.9 1.4E+02 0.0031 32.1 9.8 59 251-309 194-252 (596)
345 PF07047 OPA3: Optic atrophy 3 47.8 42 0.00092 29.0 5.2 37 232-274 95-131 (134)
346 PF13118 DUF3972: Protein of u 47.6 68 0.0015 28.2 6.4 45 256-300 79-123 (126)
347 PF14282 FlxA: FlxA-like prote 47.5 1.4E+02 0.0031 24.8 8.2 19 255-273 51-69 (106)
348 KOG0946 ER-Golgi vesicle-tethe 47.3 1.4E+02 0.0031 33.8 10.0 58 250-307 659-716 (970)
349 PRK11147 ABC transporter ATPas 47.2 89 0.0019 33.2 8.5 52 257-308 570-627 (635)
350 KOG3650 Predicted coiled-coil 47.0 91 0.002 26.7 6.8 37 254-290 69-105 (120)
351 PF11544 Spc42p: Spindle pole 46.9 55 0.0012 26.5 5.3 20 287-306 16-35 (76)
352 PRK10361 DNA recombination pro 46.8 3.8E+02 0.0082 28.4 12.8 27 259-285 64-90 (475)
353 TIGR01010 BexC_CtrB_KpsE polys 46.5 89 0.0019 30.6 7.9 21 295-315 247-267 (362)
354 PRK09413 IS2 repressor TnpA; R 46.2 51 0.0011 27.6 5.4 23 283-305 85-107 (121)
355 PRK05431 seryl-tRNA synthetase 46.2 2.6E+02 0.0057 28.6 11.4 26 260-285 33-58 (425)
356 PF08232 Striatin: Striatin fa 46.1 1.9E+02 0.0041 25.1 9.0 48 261-308 17-64 (134)
357 PF10883 DUF2681: Protein of u 46.1 83 0.0018 25.9 6.3 38 264-306 32-69 (87)
358 PF06424 PRP1_N: PRP1 splicing 46.0 14 0.0003 32.6 1.9 38 253-290 81-118 (133)
359 PF07058 Myosin_HC-like: Myosi 45.9 71 0.0015 32.2 6.9 46 264-309 2-47 (351)
360 PRK03992 proteasome-activating 45.7 82 0.0018 31.5 7.6 17 261-277 14-30 (389)
361 PRK10361 DNA recombination pro 45.5 4E+02 0.0086 28.3 12.7 23 256-278 68-90 (475)
362 PRK02224 chromosome segregatio 45.2 3.4E+02 0.0074 29.7 12.7 10 257-266 511-520 (880)
363 PF06216 RTBV_P46: Rice tungro 45.0 1.3E+02 0.0028 29.8 8.5 47 255-308 64-110 (389)
364 KOG4674 Uncharacterized conser 45.0 1.4E+02 0.0031 36.4 10.2 63 247-309 1235-1297(1822)
365 PRK14127 cell division protein 44.7 55 0.0012 27.9 5.3 21 286-306 47-67 (109)
366 PF09744 Jnk-SapK_ap_N: JNK_SA 44.7 2.4E+02 0.0052 25.4 12.1 16 285-300 98-113 (158)
367 PRK09174 F0F1 ATP synthase sub 44.7 2.6E+02 0.0057 25.9 13.4 44 233-276 83-126 (204)
368 PRK03992 proteasome-activating 44.5 72 0.0016 31.9 7.0 44 258-308 4-47 (389)
369 PF13874 Nup54: Nucleoporin co 44.4 1.1E+02 0.0024 26.5 7.3 48 262-309 72-119 (141)
370 PF10205 KLRAQ: Predicted coil 44.4 2E+02 0.0043 24.5 9.2 31 276-306 40-70 (102)
371 TIGR00606 rad50 rad50. This fa 44.3 3.4E+02 0.0074 31.7 13.1 10 37-46 663-672 (1311)
372 PF07200 Mod_r: Modifier of ru 44.1 2.1E+02 0.0044 24.5 10.5 11 293-303 72-82 (150)
373 PF01920 Prefoldin_2: Prefoldi 43.9 76 0.0016 25.1 5.8 27 258-284 65-91 (106)
374 TIGR03185 DNA_S_dndD DNA sulfu 43.8 1.6E+02 0.0036 31.4 9.9 16 294-309 266-281 (650)
375 PTZ00454 26S protease regulato 43.7 66 0.0014 32.7 6.6 16 267-282 27-42 (398)
376 COG5570 Uncharacterized small 43.4 41 0.0009 25.6 3.8 51 255-305 5-55 (57)
377 PRK10722 hypothetical protein; 43.2 1.7E+02 0.0037 28.5 8.9 57 232-290 142-204 (247)
378 PF14523 Syntaxin_2: Syntaxin- 43.0 1.7E+02 0.0036 23.2 8.5 21 289-309 63-83 (102)
379 PF15556 Zwint: ZW10 interacto 42.8 3.2E+02 0.0069 26.4 11.3 52 258-309 130-181 (252)
380 PRK14143 heat shock protein Gr 42.8 1.5E+02 0.0032 28.5 8.4 11 260-270 86-96 (238)
381 PF00769 ERM: Ezrin/radixin/mo 42.6 3.1E+02 0.0066 26.1 11.7 25 253-277 31-55 (246)
382 PRK10132 hypothetical protein; 42.5 1.4E+02 0.003 25.4 7.3 29 257-285 7-35 (108)
383 PF04568 IATP: Mitochondrial A 42.5 1.5E+02 0.0033 24.9 7.5 45 240-284 54-98 (100)
384 COG4372 Uncharacterized protei 42.5 3.5E+02 0.0075 28.5 11.3 43 254-296 136-178 (499)
385 PF13942 Lipoprotein_20: YfhG 42.5 1.3E+02 0.0027 28.0 7.5 43 245-289 115-157 (179)
386 PF10883 DUF2681: Protein of u 42.3 1.1E+02 0.0023 25.3 6.4 36 274-309 21-56 (87)
387 KOG0982 Centrosomal protein Nu 42.3 1.5E+02 0.0034 31.2 8.9 53 254-306 373-433 (502)
388 PF07767 Nop53: Nop53 (60S rib 42.2 1.5E+02 0.0033 29.6 8.9 38 230-267 272-309 (387)
389 PF03961 DUF342: Protein of un 41.9 1.6E+02 0.0034 30.1 9.0 56 254-309 333-401 (451)
390 PF09766 FimP: Fms-interacting 41.8 1.7E+02 0.0037 29.3 9.1 41 250-290 103-143 (355)
391 COG1382 GimC Prefoldin, chaper 41.8 1E+02 0.0022 26.9 6.5 27 283-309 84-110 (119)
392 PF09486 HrpB7: Bacterial type 41.7 2.2E+02 0.0047 25.8 8.9 33 256-288 80-112 (158)
393 PRK15396 murein lipoprotein; P 41.6 1.9E+02 0.0041 23.4 7.8 34 256-289 26-59 (78)
394 KOG0243 Kinesin-like protein [ 41.6 3.6E+02 0.0078 31.3 12.3 37 273-309 480-516 (1041)
395 KOG0161 Myosin class II heavy 41.4 3.1E+02 0.0068 33.9 12.4 56 254-309 1455-1510(1930)
396 PF05622 HOOK: HOOK protein; 41.2 8.9 0.00019 41.4 0.0 56 251-306 321-379 (713)
397 PRK11281 hypothetical protein; 41.1 4.8E+02 0.01 30.5 13.5 62 264-325 280-343 (1113)
398 TIGR02132 phaR_Bmeg polyhydrox 40.9 2.1E+02 0.0046 26.8 8.8 52 255-306 79-130 (189)
399 TIGR03545 conserved hypothetic 40.9 1.6E+02 0.0036 31.4 9.2 40 231-270 164-206 (555)
400 PRK14872 rod shape-determining 40.9 80 0.0017 31.9 6.6 35 258-296 60-94 (337)
401 PF12808 Mto2_bdg: Micro-tubul 40.8 45 0.00097 25.1 3.7 26 257-282 24-49 (52)
402 PF11577 NEMO: NF-kappa-B esse 40.8 1.8E+02 0.0039 22.9 8.7 51 259-309 3-57 (68)
403 PF03962 Mnd1: Mnd1 family; I 40.8 2E+02 0.0044 26.3 8.8 14 310-323 151-164 (188)
404 PRK10920 putative uroporphyrin 40.6 2.2E+02 0.0048 29.3 9.8 32 258-289 95-126 (390)
405 KOG1319 bHLHZip transcription 40.5 2.8E+02 0.006 26.4 9.5 24 280-303 116-139 (229)
406 COG2900 SlyX Uncharacterized p 40.3 1.9E+02 0.0042 23.2 7.8 49 258-306 4-52 (72)
407 PF07798 DUF1640: Protein of u 40.1 2.1E+02 0.0045 25.6 8.6 7 299-305 140-146 (177)
408 PF11382 DUF3186: Protein of u 39.9 88 0.0019 30.7 6.6 29 257-285 34-62 (308)
409 COG3159 Uncharacterized protei 39.9 1.4E+02 0.003 28.6 7.6 18 289-306 68-85 (218)
410 KOG4643 Uncharacterized coiled 39.8 4E+02 0.0087 31.1 12.2 64 233-296 372-435 (1195)
411 KOG0996 Structural maintenance 39.7 4.1E+02 0.0089 31.5 12.4 16 32-47 159-174 (1293)
412 PF06419 COG6: Conserved oligo 39.6 5.2E+02 0.011 27.9 13.2 55 255-309 45-99 (618)
413 PF14988 DUF4515: Domain of un 39.5 3.2E+02 0.007 25.5 11.5 42 262-303 156-197 (206)
414 PF09325 Vps5: Vps5 C terminal 39.5 2.9E+02 0.0062 24.9 11.3 76 235-310 122-197 (236)
415 PF07889 DUF1664: Protein of u 39.4 2.6E+02 0.0057 24.4 10.5 53 255-307 68-120 (126)
416 PF11853 DUF3373: Protein of u 39.4 25 0.00054 37.1 2.9 17 256-272 32-48 (489)
417 PF12001 DUF3496: Domain of un 39.2 2.5E+02 0.0053 24.2 8.4 54 256-309 8-62 (111)
418 PHA02675 ORF104 fusion protein 39.1 2.2E+02 0.0048 23.7 7.7 11 295-305 70-80 (90)
419 TIGR00634 recN DNA repair prot 39.1 2.9E+02 0.0063 29.1 10.7 49 255-303 168-222 (563)
420 PF10168 Nup88: Nuclear pore c 38.9 5.5E+02 0.012 28.5 13.0 31 255-285 579-609 (717)
421 PF06008 Laminin_I: Laminin Do 38.8 2.8E+02 0.006 26.2 9.6 60 255-314 45-104 (264)
422 PF07544 Med9: RNA polymerase 38.7 1.3E+02 0.0029 23.9 6.4 18 286-303 62-79 (83)
423 KOG0483 Transcription factor H 38.2 53 0.0011 30.7 4.6 36 273-308 109-144 (198)
424 TIGR03007 pepcterm_ChnLen poly 37.9 4.5E+02 0.0098 26.7 11.9 10 81-90 119-128 (498)
425 cd07627 BAR_Vps5p The Bin/Amph 37.8 3.2E+02 0.007 25.0 12.1 65 245-309 105-176 (216)
426 PF09766 FimP: Fms-interacting 37.8 1.6E+02 0.0034 29.5 8.2 37 273-309 105-141 (355)
427 cd07429 Cby_like Chibby, a nuc 37.4 91 0.002 26.7 5.5 23 260-282 77-99 (108)
428 PF10498 IFT57: Intra-flagella 37.3 4.6E+02 0.0099 26.6 12.4 48 261-308 265-312 (359)
429 PF15369 KIAA1328: Uncharacter 37.3 4.6E+02 0.0099 26.6 12.0 57 229-287 3-65 (328)
430 PRK13923 putative spore coat p 37.3 98 0.0021 28.5 6.0 35 254-288 110-144 (170)
431 PF08248 Tryp_FSAP: Tryptophyl 37.2 16 0.00035 19.8 0.6 7 12-18 2-8 (12)
432 PF09602 PhaP_Bmeg: Polyhydrox 37.2 3.3E+02 0.0072 25.0 11.0 50 260-309 46-97 (165)
433 PF06428 Sec2p: GDP/GTP exchan 37.0 1.2E+02 0.0027 25.4 6.1 66 242-307 9-82 (100)
434 KOG0249 LAR-interacting protei 36.9 3.6E+02 0.0078 30.5 11.0 42 263-304 217-258 (916)
435 TIGR03185 DNA_S_dndD DNA sulfu 36.7 5.6E+02 0.012 27.5 13.1 8 39-46 67-74 (650)
436 PRK11239 hypothetical protein; 36.7 60 0.0013 30.9 4.7 29 257-285 185-213 (215)
437 PF12999 PRKCSH-like: Glucosid 36.5 2E+02 0.0043 26.6 7.9 34 248-281 139-172 (176)
438 KOG0964 Structural maintenance 36.5 4E+02 0.0086 31.1 11.5 44 266-309 450-493 (1200)
439 PF09969 DUF2203: Uncharacteri 36.5 2.2E+02 0.0047 24.4 7.8 25 291-315 44-68 (120)
440 COG1340 Uncharacterized archae 36.4 4.5E+02 0.0097 26.3 11.3 47 258-304 30-76 (294)
441 PF14357 DUF4404: Domain of un 36.3 41 0.00089 27.2 3.1 69 254-322 3-71 (85)
442 PF07111 HCR: Alpha helical co 36.2 4.4E+02 0.0095 29.5 11.5 69 235-303 481-569 (739)
443 PF15188 CCDC-167: Coiled-coil 36.0 2.5E+02 0.0053 23.1 7.7 27 267-293 41-67 (85)
444 KOG0561 bHLH transcription fac 35.9 89 0.0019 31.6 5.9 28 254-281 104-131 (373)
445 PF04871 Uso1_p115_C: Uso1 / p 35.9 3E+02 0.0064 24.0 11.7 10 286-295 65-74 (136)
446 TIGR01000 bacteriocin_acc bact 35.8 4E+02 0.0087 27.1 10.9 26 107-132 88-116 (457)
447 PF05557 MAD: Mitotic checkpoi 35.8 2.3E+02 0.005 30.8 9.6 56 254-309 502-585 (722)
448 PF05812 Herpes_BLRF2: Herpesv 35.8 57 0.0012 28.4 4.1 22 279-300 6-27 (118)
449 KOG4348 Adaptor protein CMS/SE 35.7 2.1E+02 0.0044 30.6 8.7 27 253-279 567-593 (627)
450 PF12709 Kinetocho_Slk19: Cent 35.7 2.6E+02 0.0055 23.2 9.2 39 253-291 40-78 (87)
451 TIGR01461 greB transcription e 35.7 1.3E+02 0.0028 26.7 6.5 52 258-309 11-71 (156)
452 PF06632 XRCC4: DNA double-str 35.6 3.7E+02 0.008 27.2 10.3 14 296-309 193-206 (342)
453 PF08781 DP: Transcription fac 35.5 1.9E+02 0.0042 25.8 7.5 18 251-268 18-35 (142)
454 KOG2010 Double stranded RNA bi 35.5 2.5E+02 0.0053 28.8 8.9 67 231-300 124-199 (405)
455 TIGR02680 conserved hypothetic 35.4 6.1E+02 0.013 30.0 13.4 87 231-317 858-948 (1353)
456 PF09403 FadA: Adhesion protei 35.4 3E+02 0.0066 24.0 9.1 46 235-282 34-79 (126)
457 TIGR00606 rad50 rad50. This fa 35.4 4.7E+02 0.01 30.6 12.4 14 247-260 849-862 (1311)
458 cd07667 BAR_SNX30 The Bin/Amph 35.3 4.2E+02 0.0091 25.6 10.4 52 249-303 154-205 (240)
459 KOG1318 Helix loop helix trans 35.2 1.1E+02 0.0024 31.7 6.7 34 254-287 289-322 (411)
460 KOG4010 Coiled-coil protein TP 35.2 1.1E+02 0.0025 28.8 6.2 20 259-278 48-67 (208)
461 PF02646 RmuC: RmuC family; I 35.1 2E+02 0.0043 28.1 8.2 50 256-308 14-66 (304)
462 TIGR01069 mutS2 MutS2 family p 35.1 3.5E+02 0.0075 30.1 10.9 14 227-240 493-506 (771)
463 KOG0933 Structural maintenance 34.8 5.4E+02 0.012 30.1 12.2 53 254-306 814-866 (1174)
464 COG4985 ABC-type phosphate tra 34.7 1.7E+02 0.0037 28.7 7.4 20 289-308 220-239 (289)
465 KOG2751 Beclin-like protein [S 34.4 3.6E+02 0.0078 28.4 10.2 62 244-305 153-219 (447)
466 PRK11546 zraP zinc resistance 34.3 3.4E+02 0.0074 24.3 9.8 14 239-252 54-67 (143)
467 PF07517 SecA_DEAD: SecA DEAD- 34.0 2.5E+02 0.0055 27.2 8.6 43 273-319 37-79 (266)
468 TIGR01554 major_cap_HK97 phage 34.0 3E+02 0.0065 27.2 9.4 26 256-281 35-60 (378)
469 PF12999 PRKCSH-like: Glucosid 33.8 3.3E+02 0.0072 25.2 8.9 6 184-189 66-71 (176)
470 PF13874 Nup54: Nucleoporin co 33.7 3.1E+02 0.0068 23.7 9.4 53 256-308 73-125 (141)
471 PF08687 ASD2: Apx/Shroom doma 33.6 3.1E+02 0.0066 26.9 9.1 28 251-278 89-116 (264)
472 PRK01156 chromosome segregatio 33.5 6.8E+02 0.015 27.7 12.8 94 231-325 353-460 (895)
473 PRK14872 rod shape-determining 33.3 1.1E+02 0.0024 30.9 6.2 23 264-286 59-81 (337)
474 PHA03162 hypothetical protein; 33.3 54 0.0012 29.1 3.6 21 279-299 16-36 (135)
475 PRK00409 recombination and DNA 33.2 7.2E+02 0.016 27.7 13.0 81 231-313 513-593 (782)
476 KOG1937 Uncharacterized conser 33.2 3.6E+02 0.0079 28.7 10.0 66 232-299 410-518 (521)
477 KOG2185 Predicted RNA-processi 33.1 2.8E+02 0.0061 29.2 9.1 39 241-279 399-437 (486)
478 PF13851 GAS: Growth-arrest sp 33.0 4E+02 0.0086 24.6 12.7 78 231-308 62-139 (201)
479 PF10359 Fmp27_WPPW: RNA pol I 33.0 1.4E+02 0.003 31.1 7.1 56 254-309 169-226 (475)
480 KOG2391 Vacuolar sorting prote 33.0 3.2E+02 0.0068 28.1 9.3 59 243-301 220-278 (365)
481 PRK14158 heat shock protein Gr 32.9 2.7E+02 0.0059 25.9 8.3 56 259-314 37-93 (194)
482 PF13870 DUF4201: Domain of un 32.7 3.2E+02 0.007 24.1 8.6 52 254-305 83-134 (177)
483 PF08961 DUF1875: Domain of un 32.6 15 0.00032 35.3 0.0 42 254-295 121-162 (243)
484 KOG0483 Transcription factor H 32.5 80 0.0017 29.6 4.8 39 271-309 107-145 (198)
485 PF11690 DUF3287: Protein of u 32.5 1.3E+02 0.0027 25.9 5.6 43 249-291 34-80 (109)
486 PRK00409 recombination and DNA 32.4 3.8E+02 0.0083 29.8 10.7 67 247-313 505-571 (782)
487 KOG4593 Mitotic checkpoint pro 32.4 3.9E+02 0.0085 29.8 10.4 78 248-325 552-649 (716)
488 PHA03155 hypothetical protein; 32.3 59 0.0013 28.2 3.6 22 278-299 10-31 (115)
489 cd07429 Cby_like Chibby, a nuc 32.3 1.1E+02 0.0023 26.3 5.1 37 255-291 72-108 (108)
490 PF14916 CCDC92: Coiled-coil d 32.3 1E+02 0.0023 23.8 4.6 35 254-288 2-40 (60)
491 PF05701 WEMBL: Weak chloropla 32.2 4.1E+02 0.0088 28.0 10.4 66 244-309 291-356 (522)
492 PF04375 HemX: HemX; InterPro 32.2 4E+02 0.0087 26.7 10.0 65 254-318 52-124 (372)
493 KOG1691 emp24/gp25L/p24 family 32.2 1.4E+02 0.003 28.5 6.3 50 253-302 132-181 (210)
494 KOG2587 RNA polymerase III (C) 32.2 1.5E+02 0.0033 31.8 7.2 67 257-324 480-546 (551)
495 COG1382 GimC Prefoldin, chaper 32.2 1.3E+02 0.0029 26.1 5.8 39 254-292 76-114 (119)
496 PF14257 DUF4349: Domain of un 32.0 1E+02 0.0022 28.9 5.6 63 224-286 131-193 (262)
497 PF14362 DUF4407: Domain of un 32.0 4.6E+02 0.01 25.0 11.7 85 229-313 107-205 (301)
498 PF10212 TTKRSYEDQ: Predicted 31.9 4.7E+02 0.01 28.1 10.8 66 242-309 409-474 (518)
499 PF04375 HemX: HemX; InterPro 31.9 3.1E+02 0.0068 27.5 9.2 56 254-309 59-119 (372)
500 PF05600 DUF773: Protein of un 31.9 2.8E+02 0.006 29.4 9.1 56 254-309 431-486 (507)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.34 E-value=8.6e-12 Score=94.39 Aligned_cols=61 Identities=41% Similarity=0.566 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN 292 (327)
+.|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999987776666655544
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.32 E-value=1.1e-11 Score=93.63 Aligned_cols=61 Identities=39% Similarity=0.571 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN 292 (327)
+.|+.+|+++||+||++||.||++|+.+|+.+|..|..+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999999999999999999998888888776
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.26 E-value=9.8e-12 Score=126.75 Aligned_cols=72 Identities=35% Similarity=0.410 Sum_probs=68.7
Q ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (327)
Q Consensus 227 ~~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaq 298 (327)
.+|++-.||+.|||+|||||..||+|||+|+..||.++..|..||+.|++++..|++++..++.||.+||--
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvp 345 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVP 345 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccC
Confidence 467888999999999999999999999999999999999999999999999999999999999999999743
No 4
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.21 E-value=1.4e-11 Score=124.03 Aligned_cols=80 Identities=31% Similarity=0.396 Sum_probs=71.5
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 229 d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.+...||.||||+|.+|||.||+|||.|++.||.+|.....||++|.+++. .++.+|+.|-+++.+|++.|.+
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~-------~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE-------ELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH-------HHhhccHHHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999999999999999999988775 6789999999999999999988
Q ss_pred HHHHHhh
Q 020381 309 YFIRIIQ 315 (327)
Q Consensus 309 av~r~~~ 315 (327)
..++.+.
T Consensus 319 ~an~s~q 325 (472)
T KOG0709|consen 319 VANKSTQ 325 (472)
T ss_pred cccchhc
Confidence 7554443
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.16 E-value=2.4e-10 Score=107.36 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
-|+|-+|||+|||.+|+-+|-|||++++++|.+|.+|..||..|..++..|+.+...|.++|..|.++++.|+..|..
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999876644
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.03 E-value=4.4e-10 Score=108.01 Aligned_cols=60 Identities=30% Similarity=0.525 Sum_probs=54.4
Q ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 227 ~~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
..|+.-.||+-|++||||+||.+|+|||+|+++||.+|.-|+.+|..|-++|..|+.-|.
T Consensus 284 ~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 284 GAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 345567899999999999999999999999999999999999999999999998887664
No 7
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.00 E-value=2.6e-09 Score=78.59 Aligned_cols=51 Identities=39% Similarity=0.629 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
+.++.||+ +||++|++||.||++++.+|+.+|..|+.+|..|..++..|..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888 9999999999999999999999999999999999988887764
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.10 E-value=5.6e-08 Score=78.69 Aligned_cols=59 Identities=37% Similarity=0.501 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
.+.|..||.++||.+|+.||.||..++.+||.++..|+.+...|..++..+...+..+.
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk 85 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999988887777777766665554443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.06 E-value=1.8e-05 Score=75.69 Aligned_cols=66 Identities=29% Similarity=0.439 Sum_probs=52.4
Q ss_pred HHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRA-RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYF 310 (327)
Q Consensus 232 e~KR~-RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av 310 (327)
+..|. |..++||+.|.+||.||.+||..||.+|..|..+|..|-..+.. |+.++++++.+|..+|
T Consensus 203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~--------------l~~~v~e~k~~V~~hi 268 (279)
T KOG0837|consen 203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK--------------LKEQVAELKQKVMEHI 268 (279)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 44444 44799999999999999999999999999999999888777754 5566666777766554
Q ss_pred H
Q 020381 311 I 311 (327)
Q Consensus 311 ~ 311 (327)
-
T Consensus 269 ~ 269 (279)
T KOG0837|consen 269 H 269 (279)
T ss_pred h
Confidence 3
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.44 E-value=0.0018 Score=62.96 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=44.0
Q ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 232 e~KR~RR-~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
..|+.|| .+.|..+|-|-|+||++..+.|+.++..|+.+|.+|+.++..+.++++
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ 279 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIR 279 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554 455666799999999999999999999999999999999876554443
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.15 E-value=0.0041 Score=54.34 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
-.|..||-+|||=.|+-+|-|+.+.-.+||.+-..|..+.. .|..||..++.++..++.|+..+
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~--------------~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE--------------KLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999998877777766555444433 34455556666666666666655
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.83 E-value=0.0051 Score=58.91 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=39.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
|+-+|=+++||||.+.++...++..+|..|+.||..|+.++..|++
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446889999999999999999999999999999999888865443
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.47 E-value=0.0058 Score=64.53 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=53.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
|=.||+=|||.+|+++|+||..-|..||..|+.|+.|-..|.++-.. +...=.++++++..|-..|
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~-------~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDE-------LDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999998888766643 4444456778888877655
No 14
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.32 E-value=0.047 Score=42.50 Aligned_cols=60 Identities=20% Similarity=0.102 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQL 316 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~ 316 (327)
+..|+.+|+.|-.....|+.++..|.++...+..|++.|..+++.=|.||...|.|...+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 567888888888888888888888888888888999999998888888887767666543
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.10 E-value=0.092 Score=41.43 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK-------YDESAVNNRILKADIETLRAKVTYYFIR 312 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk-------~~~l~~EN~~Lkaql~~Lrakv~~av~r 312 (327)
+-++.||.+|..+-.....|..++..|+++ ...+..+|..|+.+......+|...+.+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777766555555555555555555 5555555555555555555665554433
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.81 E-value=0.16 Score=40.11 Aligned_cols=52 Identities=10% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
.+.-|+.+++.|+.+|..|..+...|.++...+..+-...+..+..|=.|+.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666666666666666666666666666666666666666666555543
No 17
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=0.16 Score=40.48 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYF 310 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av 310 (327)
-+.=|.-+|+.|+.+|+.|..+...+.+....+..+|..||.+-...+.+++..+
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999999999999999999999999999999998887753
No 18
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.27 E-value=0.059 Score=38.98 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
+|+.+...|+.....|...|..|..||..|++++..|..++.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777788888888888888999999999999999988875
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.03 E-value=0.2 Score=45.32 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
....++.||..|..++..|++++..|..||..|.+++..+.....+.
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999888888777665
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.96 E-value=0.7 Score=43.03 Aligned_cols=55 Identities=5% Similarity=0.048 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++..+|+.++..+..+...|..++..|++++..+..+|+.|++++..++..+.+-
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445545555555555555555555555566666666666666666555444
No 21
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.77 E-value=0.21 Score=42.14 Aligned_cols=47 Identities=32% Similarity=0.441 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
.+.+||.++..|-.+...|+.++..|.++...|..||..||..+..+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555555555555554444444444444444444444
No 22
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.71 E-value=0.18 Score=42.50 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+|=.++..|+.....|..++..|+.++..+..||..|+-+...||.+|...
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999998764
No 23
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.67 E-value=0.18 Score=42.88 Aligned_cols=47 Identities=28% Similarity=0.389 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
.+..||.++..|..+-..|+..+..|.++...|..||..||..+..+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666555555555555555555555544
No 24
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.61 E-value=0.095 Score=54.31 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
..+.+||.+++.|+.|.+.|.+++..+++++..++.||..|+.+++.+...
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 467899999999999999999999999999999999999999999665543
No 25
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.55 E-value=0.5 Score=43.99 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
..++.+.+++.++..|+.+|+.|..++..++.+...+..+|..++.++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777777777777777777777777777643
No 26
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.51 E-value=0.37 Score=37.58 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+.++.|=.....|+.||..|+.++..+..+...+...|..=+++|++|-.+|+.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 567888889999999999999999999999999999999999999999988864
No 27
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.31 E-value=0.42 Score=38.64 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFI 311 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~ 311 (327)
+.=|.-+|+.|+.+|..|..++..+......+..+|..||.+......+|...+-
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777777777777888999999999999988877543
No 28
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.09 E-value=0.34 Score=41.20 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.+|=.++..|+.....|..++..|++++..+..||..|+-+...||.+|...
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999999999999999999999999999999999863
No 29
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.87 E-value=0.61 Score=36.51 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
+.+++.|..+++..+.+|..|..+-.....++..+-.+|..|+.+++.|+..+.
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888888777777787888888888888888877654
No 30
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.82 E-value=1.5 Score=39.80 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
...++.+.+...+..-+.-.......|.+++.-++.|..|...|.-++..+..++..+..||+.|-.+......+
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666677788888888888888888888888888888888888888887777665543
No 31
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=93.61 E-value=0.38 Score=41.09 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
=.+|..|+.....|.+++..+++++..+..||..|+-+.+.||.+|..
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 345555665666677777888888888888888888888888888765
No 32
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=93.17 E-value=2.3 Score=34.70 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
-.+|..+.+.+=+++=..|.-+.....+|+.++..|....+.|-.+|.....++..++.-|+.+...+...-..|+.+
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~v 86 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAV 86 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888899998888888888888889999999999999999999999999999999888888887777666665553
No 33
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.57 E-value=1.3 Score=35.21 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD--------ESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~--------~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|.+.+.+++.|+.||=.|+-++-.|.+++. .+..+|-.|+.++..|+..|...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~ 62 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEK 62 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999888887776 35788889999999998887665
No 34
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.50 E-value=1.4 Score=35.61 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
++|..++..|+..-..|..++..++..+..|..||..|+.=|..|-
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777778877788888888888888888888888888887773
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.97 E-value=2.8 Score=36.23 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
..+..|=...|+..-....++...+..|+..+..|+.++..+..++..+..+...+..+++.+...+..++
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555667777777777777777777777777766666666666665555555555555444444444
No 36
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.89 E-value=6.9 Score=33.82 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.+..|..+++.+.+++..+...-+.|+.++..+..++
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 37
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.40 E-value=4.5 Score=34.51 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=36.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E 291 (327)
-+.+-+..-.|..+-|+..=...-++|+..+..|+.+|..+..++.+|+.++..+...
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666555566677777777777777777776666666665433
No 38
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.36 E-value=4.6 Score=39.66 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhc
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQLSIFYIMWL 324 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~~~~~~~~ 324 (327)
.+.+..|+.+...|..+-..+......+..++.....+...|+.++..+...|.. +++.--.|..|..|.
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~-L~ktNv~n~~F~I~h 146 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR-LRKTNVYNDTFHIWH 146 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHT--TTTTT--EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhceeeEee
Confidence 3444555555555555555555555555555555556666666666666655544 677778888888774
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.23 E-value=5.8 Score=42.18 Aligned_cols=76 Identities=16% Similarity=0.238 Sum_probs=53.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|....+++...........-+.+++.|+.++...+.++..|..+...+......+..||..|+.+...++.++...
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L 225 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666666667777777777777777777777777777777777777777777777777776655
No 40
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.79 E-value=2.1 Score=44.59 Aligned_cols=49 Identities=24% Similarity=0.397 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRA 304 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l-~~EN~~Lkaql~~Lra 304 (327)
++..|+.+-+.|+.||+.|+++...+.++++.. ..+...|.++.++|..
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~ 123 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKS 123 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456777888888888888888777777776443 3544455444444443
No 41
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=89.73 E-value=5.2 Score=38.77 Aligned_cols=79 Identities=14% Similarity=0.234 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhhHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESA--RRSRRRKQ-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 231 ~e~KR~RR~lsNRESA--rRSR~RKk-~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
.+.||.|-++.-.-+- ++-|+-+. ..+.+|+.+-+.|+.||..|+.....|-.+.+++..+=..|++++..|...+.
T Consensus 70 ~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 70 VQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 3567777444322111 22233333 34789999999999999999999999999999999999999999999987765
Q ss_pred HH
Q 020381 308 YY 309 (327)
Q Consensus 308 ~a 309 (327)
+-
T Consensus 150 ~~ 151 (292)
T KOG4005|consen 150 HN 151 (292)
T ss_pred Hh
Confidence 54
No 42
>PRK11637 AmiB activator; Provisional
Probab=89.70 E-value=7.8 Score=39.04 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.....-...+..|+.++..++.+...+..++..+++++..+..+=..++.++..++..+...
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666666666666666666666666666666666666666666666555443
No 43
>PRK11637 AmiB activator; Provisional
Probab=89.69 E-value=7.7 Score=39.10 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+......+..+.+++.++..|..+...+..++..+++++..+..+=..|+.++..++.++...
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445556666666666666666666666666666666666666666666666666554
No 44
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.49 E-value=2 Score=33.18 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
++|.+||.++..++.-...|...+..-.+++..+..+-+.|..++..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788888888888888888877777766666666555555555555544
No 45
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=89.21 E-value=0.85 Score=44.08 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 020381 263 QAGQLRAEHSSLLKGLTDVNQKYDE----SAVNNRILKADI 299 (327)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~----l~~EN~~Lkaql 299 (327)
.+.+|+.||..|++++..+++++.. +..||+.||+-+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777666444433 566666666533
No 46
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.03 E-value=2.4 Score=42.07 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..|...+..|+.+|..|+.++...+.++..|..+|+.||.....+.+++-.-
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqE 74 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQE 74 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888888899999999988888888776544
No 47
>smart00340 HALZ homeobox associated leucin zipper.
Probab=88.77 E-value=0.85 Score=33.03 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 278 LTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
.+.|++-+..|..||+.|+.++++||+.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457788899999999999999999863
No 48
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=88.68 E-value=1.9 Score=37.00 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
..+.+||.++..|-++...|++.+..+-++...|..||..||..+..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999887
No 49
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.41 E-value=16 Score=33.73 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---------------VNNRILK 296 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~---------------~EN~~Lk 296 (327)
+....++.+.+-+.-+.+=..-+..+..++.++..|+-|+..|..++..+.+....+. -.|-.|.
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLE 149 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777776666666677777777777777777777766666665555442 3455556
Q ss_pred HHHHHHHHHH
Q 020381 297 ADIETLRAKV 306 (327)
Q Consensus 297 aql~~Lrakv 306 (327)
..+..|...+
T Consensus 150 kKl~~l~~~l 159 (201)
T PF13851_consen 150 KKLQALSEQL 159 (201)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 50
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.24 E-value=5.4 Score=38.48 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..++++..+...|..+|..|..++..++.++..+..||..|......|-.++...
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 3455555666666666666666677777777778888888776665555555443
No 51
>PRK09039 hypothetical protein; Validated
Probab=88.10 E-value=3.4 Score=40.99 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYF 310 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av 310 (327)
....+...+|..|+.+...|+.++..|+..+..++.+.+..+.+++.|..+|..++
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788888888888888888888888888888888999999988887774
No 52
>PRK04406 hypothetical protein; Provisional
Probab=87.56 E-value=5.6 Score=31.60 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.|+.++..|+...+.+-..+..|+.-+..-..+-..|+.++..|..+++.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444445566666666666654
No 53
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.51 E-value=3.5 Score=32.28 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
++.-.+.....|..|+.....++..+-..+..|..||..|+.++..+++
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556677788888888888888888888888888888888877764
No 54
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.44 E-value=3.4 Score=36.49 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGL--TDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l--~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
+.+.+|+.++..|+.|...|...+ .+|..+...+..++..|..++..|+.
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555544 34555556666666666666666653
No 55
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=87.34 E-value=9.5 Score=30.13 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY---FIRI 313 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a---v~r~ 313 (327)
+..||.--......-+.....+..|+..+.....+|..|++++..|..+|... |.|.
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444445556666777788888888888899999999999999888776 5554
No 56
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.33 E-value=2.9 Score=42.16 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 249 SR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
-=.|-+.+...||.-+.+++.||+.|.-+|..+.+++.+.+.|+..|..++.+-.+.
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~lay 177 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAY 177 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999999999999999999997766655443
No 57
>PRK02119 hypothetical protein; Provisional
Probab=87.31 E-value=5.8 Score=31.24 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+++.+||.++...+.-...|...+..-.+++ ..|+.++..|..+++.
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 4566666666666655555555555444444 4455556666555544
No 58
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=87.25 E-value=7.9 Score=31.43 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+-++.||.+|.+.-....-|.-++.+|+++...+..++..++..-..|+
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~ 52 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3477899999888888888888888888887777777776444444444
No 59
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.22 E-value=10 Score=34.89 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
.+-.+.+|.+..+-+-.+.+.+.+...|+.++..-+.++..+..++..|.+++..+
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL 143 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 45556667777888888888888888888777765444444444444443333333
No 60
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.21 E-value=16 Score=31.44 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDES-------AVNNRILKADIETLRAKVTYYFI 311 (327)
Q Consensus 274 L~~~l~~L~qk~~~l-------~~EN~~Lkaql~~Lrakv~~av~ 311 (327)
|..++.+|+.+|..+ .-++..|+.++..|+.-++.-|.
T Consensus 73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 56777777777777766655443
No 61
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.10 E-value=7.7 Score=35.15 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
..+.+|+.++.....-|+.|..++..|+-++..++...+.|+.+-..|-.++-
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555543
No 62
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.91 E-value=20 Score=33.34 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=3.5
Q ss_pred hcchhhhh
Q 020381 315 QLSIFYIM 322 (327)
Q Consensus 315 ~~~~~~~~ 322 (327)
.+..+||+
T Consensus 152 ~l~~ifpI 159 (302)
T PF10186_consen 152 ELSEIFPI 159 (302)
T ss_pred HHHHHhCc
Confidence 34444444
No 63
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.17 E-value=3.5 Score=31.33 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H-HH-hhcchh
Q 020381 286 DESAVNNRILKADIETLRAKVTYYF--I-RI-IQLSIF 319 (327)
Q Consensus 286 ~~l~~EN~~Lkaql~~Lrakv~~av--~-r~-~~~~~~ 319 (327)
..+..||..|+..++.|..-|++.| . -+ -|.|||
T Consensus 17 ~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~iNPF 54 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENVKDLLSLYEVVSNQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 3445556666666666666666552 1 11 277775
No 64
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.96 E-value=7.4 Score=33.56 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 020381 291 NNRILKADIETLRAKV 306 (327)
Q Consensus 291 EN~~Lkaql~~Lrakv 306 (327)
+...|+.++..|..|.
T Consensus 69 ~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 69 EVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 65
>PRK04325 hypothetical protein; Provisional
Probab=85.80 E-value=6.6 Score=30.96 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+|.+||.++..++.-...|...+..-.+++ ..|+.++..|..+++.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 467777777776666666655555444333 4455666666666655
No 66
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=85.73 E-value=6 Score=30.73 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.....+..++..++++...+..||..|+.++..|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445556666666666677777777777777776
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.73 E-value=22 Score=34.11 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY---------DESAVNNRILKADIETLR 303 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~---------~~l~~EN~~Lkaql~~Lr 303 (327)
.+-.+++..-.+.+++.=.-++..+++|+.+|..++.+.+.++.++..++.+. ..|..|=.+++.+..+|+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le 109 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666667777788888888888888888887777666443 334444445555555555
Q ss_pred HHHHHH
Q 020381 304 AKVTYY 309 (327)
Q Consensus 304 akv~~a 309 (327)
..+..+
T Consensus 110 ~el~~l 115 (239)
T COG1579 110 DELAEL 115 (239)
T ss_pred HHHHHH
Confidence 555444
No 68
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.63 E-value=10 Score=34.74 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
.+..+.+|+.+++.+......= .+-..+-+++..+..++..|+.+++.+
T Consensus 81 ~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 81 LEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555443211111 122223344444555555555554433
No 69
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.63 E-value=7.2 Score=41.50 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHH
Q 020381 248 RSRRRKQAHLNELE-------TQAGQLRAEHSSLLKGLTDVN-----------------------------QKYDESAVN 291 (327)
Q Consensus 248 RSR~RKk~~l~eLE-------~qV~~L~~EN~~L~~~l~~L~-----------------------------qk~~~l~~E 291 (327)
.+|.|-|++|.+|- .+|..|++||..|...+..++ .+...++.+
T Consensus 35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556655554 456778888888887777555 344455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020381 292 NRILKADIETLRAKVTYYFIRI 313 (327)
Q Consensus 292 N~~Lkaql~~Lrakv~~av~r~ 313 (327)
=..|+.++..|+.++..+.+..
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 6667777777777766654433
No 70
>PRK02119 hypothetical protein; Provisional
Probab=85.41 E-value=5.7 Score=31.30 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQL 316 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~ 316 (327)
+..++.++..|+...+.+-..+..|+.-+.. ..+++..|++.|+....|+-.+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~-------Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIE-------QQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 5667888888887777776666666544433 2467788888887775555443
No 71
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.31 E-value=22 Score=33.29 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
..-++.+..|+.+++.|+..|..|...+...+++...+..+-..+..--..|.
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555666666666666655555555555555444444443333333
No 72
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.29 E-value=8.1 Score=32.21 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 020381 294 ILKADIETLRAKV 306 (327)
Q Consensus 294 ~Lkaql~~Lrakv 306 (327)
.++-++.+|.+++
T Consensus 76 el~G~~~~l~~~l 88 (106)
T PF10805_consen 76 ELRGELKELSARL 88 (106)
T ss_pred HHHhHHHHHHHHH
Confidence 3333444444333
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.28 E-value=15 Score=34.53 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+|..++..|+.|...|...+..+...+.....+-..|+.++..+.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443333333
No 74
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=85.23 E-value=7.9 Score=31.33 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQ-AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 252 RKk~~l~eLE~q-V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|....++.++.+ -+.|..+...|...|..|..++..+..||..|+.+-+.|+..+...
T Consensus 5 ~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 5 RNSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555656644 7788889999999999999999999999999999999999888765
No 75
>PF15294 Leu_zip: Leucine zipper
Probab=85.23 E-value=3.2 Score=40.66 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
|..++..|+.||..|+.++..+..++....-|+..|..++..|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888888888888888888888888888887
No 76
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.86 E-value=3.4 Score=29.87 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.|......|+..|..|..+|..|+.+.+.|++.|..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888888888888888888888765
No 77
>PRK00846 hypothetical protein; Provisional
Probab=84.71 E-value=8.6 Score=30.93 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++.++..|+...+..-.-+..|++.+.....+-..|+.++..|..+|+.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444455555555555566666778888888887764
No 78
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.54 E-value=0.047 Score=54.91 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=47.2
Q ss_pred CchHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 020381 229 DSVDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLR-AEHSSLLKGLTDVN 282 (327)
Q Consensus 229 d~~e~KR~RR~lsNRESArR---SR~RKk~~l~eLE~qV~~L~-~EN~~L~~~l~~L~ 282 (327)
...+.|+..|+.+|+.+|.+ +|.||+.+...|..+|+.|+ .+|..|..++..|.
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lq 206 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQ 206 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccc
Confidence 45678999999999999999 99999999999999999999 88888766665443
No 79
>PHA03155 hypothetical protein; Provisional
Probab=84.42 E-value=6.8 Score=33.84 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTD--------V---NQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~--------L---~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.-+++|+.++..|+-||..|++++.. | +.+..-...-|+--.+-.+.++++|...
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk~ 73 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIRERVLKD 73 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999854 2 2333333455666666677788887665
No 80
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.31 E-value=6.9 Score=30.25 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|+.++..|+...+.+-..+..|+.-...-..+-..|+.++..|..+|+..
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999988888888888888888888888773
No 81
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.17 E-value=8.5 Score=38.89 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+|.++.++.|....+.|+.--++|..-.+.|......|+.+-..|++++.-|.+|+.++
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ea 279 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREA 279 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34445666666666666666666666666666666677777777777777777777775
No 82
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.94 E-value=22 Score=36.76 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
++++-+.++=+.-.++....+.....|+.++..++.++..+..++......+..+..++..+...+..|+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444455556667777777777777777777776666666666666666665555555
No 83
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=83.77 E-value=3.4 Score=31.00 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
|++..|.+|+.++..=+ | .=...-....+++..+..||+.|++++..++.
T Consensus 1 kw~~Rl~ELe~klkaer-E--~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-E--ARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH-H--hccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888887765432 1 11122345667778899999999999988764
No 84
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.69 E-value=5.1 Score=37.88 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYD---ESAVNNRILKAD 298 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~---~l~~EN~~Lkaq 298 (327)
...|+.||..|++++..|+.+.. .+..||..|+..
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554444333 455666666553
No 85
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.39 E-value=4.2 Score=35.89 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY--DESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~--~~l~~EN~~Lkaql~~Lrakv 306 (327)
+.+|+.++..|+.++..|..++..|.... ..+..+-..|++++.+|..+|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333 333333334444444444443
No 86
>PRK02793 phi X174 lysis protein; Provisional
Probab=83.32 E-value=11 Score=29.58 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
++|.+||.++...+.-...|...+..-.+++ ..|+.++..|..+++.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 4566777777766666666655555444333 4455666666655544
No 87
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=83.31 E-value=9.7 Score=34.13 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDV-NQKYDESAVNNRILKADIETLRAKVTYYF 310 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L-~qk~~~l~~EN~~Lkaql~~Lrakv~~av 310 (327)
++|...-.++...++|+.++..+ +.++..+..++..|+.+++.|+.+++.-+
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei 100 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEI 100 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566555544 34556666666666666666666665543
No 88
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.16 E-value=25 Score=34.44 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+.+++.++.++.+.+.+-..+..++.+...++..+..+-..|...+..+..||..
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777888888888888888888777777777777777766543
No 89
>PRK00295 hypothetical protein; Provisional
Probab=83.07 E-value=11 Score=29.28 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+++.+||.++..++.-...|...+..-.+++ ..|+.++..|..+++.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I-------~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVI-------ERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3578888888887777777766665544444 4455666666666655
No 90
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.95 E-value=9.8 Score=36.75 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
.++++..+++.+..||..|..+++++..+|..+.-.-..|+.+...|..+++
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666665555555555555555544444444433
No 91
>PHA03162 hypothetical protein; Provisional
Probab=82.84 E-value=4.1 Score=35.97 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTD------------V---NQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~------------L---~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
-+|+.-+++|..++..|+-||..|++++.. | +.+..-...-|+--.+-..+|++||...
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe~KVr~~ 82 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIEAKIRHE 82 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999832 1 2222223344554555566677777555
No 92
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.74 E-value=19 Score=30.80 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 272 SSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
..|..++..+..++..|..+|..|-.+|+.|
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566666666666666666666666554
No 93
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.70 E-value=9.6 Score=34.69 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
.|+.+...|+.++..|..++..|..++..+..++..++.++.+|-..
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444445555555555555555443
No 94
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=82.27 E-value=8.6 Score=37.05 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=12.0
Q ss_pred cchhHHHHHHhhhhcCC
Q 020381 34 QSEWELEKFLQEVTVSP 50 (327)
Q Consensus 34 ~SEW~FqkfLeE~~~~~ 50 (327)
..+|.+..++.+.....
T Consensus 32 ~~~~~~~~~~~~~~~~~ 48 (269)
T KOG3119|consen 32 ERELDLDAGLEALQDLD 48 (269)
T ss_pred cccccccccchhccccc
Confidence 67788888887765533
No 95
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=82.17 E-value=28 Score=35.01 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=16.9
Q ss_pred hhccCCCchHHHHHHHHHHh
Q 020381 223 ETIEGLDSVDDKRARRMLSN 242 (327)
Q Consensus 223 ~~~~~~d~~e~KR~RR~lsN 242 (327)
....++|++..+|-|||..+
T Consensus 128 v~~q~ed~~~kqRNRRmFG~ 147 (340)
T KOG3756|consen 128 VLDQNEDSKSKQRNRRMFGL 147 (340)
T ss_pred hhccCCChHHHHHhHHHHHH
Confidence 34568899999999999987
No 96
>PRK02793 phi X174 lysis protein; Provisional
Probab=82.16 E-value=9.6 Score=29.92 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQL 316 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~ 316 (327)
+++.++..|+...+.+-..+..|+.-+.. ...++..|++.|+....|+..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~-------Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTA-------HEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 47777888777777766666655544433 2467788888887765555443
No 97
>PRK00295 hypothetical protein; Provisional
Probab=82.11 E-value=12 Score=29.00 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRII 314 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~ 314 (327)
++.++..|+...+.+-..+..|+.-+.. ...++..|++.|+....|+-
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~-------Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVE-------QQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555544433322 24566777777766655543
No 98
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.87 E-value=8.5 Score=35.95 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+|-..|+.|+.-|..|..++..|...+..++..|..|..++..|+..++.
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s 54 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKS 54 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555555544433
No 99
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=81.68 E-value=13 Score=31.02 Aligned_cols=65 Identities=12% Similarity=0.013 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQLSIFYI 321 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~~~~~ 321 (327)
.+.+...+.+.+..|..|...+..-++-.......+..++.+.+..+..++.+++-=.|.+-.+|
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~Ca~~~~P 98 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDPCANTAVP 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCC
Confidence 46667777788888889998888888888888888899999999999999988776556554443
No 100
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=81.64 E-value=0.65 Score=46.82 Aligned_cols=43 Identities=35% Similarity=0.544 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 275 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~ 275 (327)
+++.|=..+||.+|-++|.|||..+..|+.+...+..+|..|.
T Consensus 284 ~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 284 ERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 4445558999999999999999999999999999999988887
No 101
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.50 E-value=1.9 Score=33.11 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 270 EHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (327)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lkaq 298 (327)
|...|+.++.+|..+...++.||..||+.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666666777777777764
No 102
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.47 E-value=22 Score=38.94 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lka 297 (327)
+..+..+|+.|...|+.++....+++..++.|.+.|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666665554443
No 103
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=81.45 E-value=8.4 Score=30.90 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcc
Q 020381 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR--AKVTYYFIRIIQLS 317 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr--akv~~av~r~~~~~ 317 (327)
...+...+..++..++++...+..||..|+.++..|. .++....+.-+||.
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~~~LgM~ 85 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAREKLGMV 85 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHcCCCC
Confidence 4555667777888888888999999999999999988 45544333335554
No 104
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.43 E-value=10 Score=35.35 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+++|+..-..|..||..|...+..+......|..|+..|+.++..+...|
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal 59 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL 59 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555444333
No 105
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.35 E-value=16 Score=32.00 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLT 279 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~ 279 (327)
+.|+.++..|+.++..+-.+|.
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~ 38 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEIT 38 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333333
No 106
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.35 E-value=32 Score=36.83 Aligned_cols=10 Identities=10% Similarity=0.484 Sum_probs=5.9
Q ss_pred hHHHHHHHhh
Q 020381 111 SDEYRAYLKT 120 (327)
Q Consensus 111 p~~y~a~Lk~ 120 (327)
..+|+.|+=-
T Consensus 50 ~rdY~Tf~Wa 59 (546)
T PF07888_consen 50 TRDYYTFVWA 59 (546)
T ss_pred hhheeeEEee
Confidence 3477777533
No 107
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.34 E-value=6.5 Score=37.58 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
-+.+|..+++.|+.|...|+.+++.++.++..+....+.|-.++..+..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788899999999999999999999999999998888888888876543
No 108
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.23 E-value=22 Score=36.37 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (327)
.|+.++..|+.++..+..++..+..++..+..+-..+
T Consensus 362 ~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 362 KVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444443334344444444444443333333
No 109
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=81.20 E-value=9.3 Score=33.15 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVN---------------QKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~---------------qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|..-+++|..++..|+-||..|++++..-. .+..-...-|+--.+-..++++||...
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe~kVr~~ 72 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIEAKVRKL 72 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999986433 122222344444455556666666554
No 110
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.05 E-value=10 Score=28.62 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
.++..++.++..+..+|..|+.++..|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444445555554
No 111
>smart00338 BRLZ basic region leucin zipper.
Probab=80.84 E-value=7.3 Score=29.20 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 280 DVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 280 ~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.|..++..+..+|..|+.++..|+..+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 112
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.78 E-value=14 Score=28.49 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+..++...+..|..+.++|.+...+...|..+=..|+.+++.||
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455566666666665544444444444444444444444
No 113
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.50 E-value=6.1 Score=37.44 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
.+.++.++..|.++.+.++.+|..+..||..|+.++
T Consensus 174 Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 174 LEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555555444444
No 114
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.27 E-value=7.8 Score=39.67 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
-++|.--|.|-.+.-...|.+++.+..|...|+.+++........+..||..||.-+..|.+-.++.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 3566667777777777788888888888888999998888888888888888888888888777665
No 115
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=80.26 E-value=3.2 Score=37.78 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
|+++|.++++.-.+|.-|..+|. +-..|..++++||-++..|+.-+
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888887773 33445555555555555555333
No 116
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.23 E-value=7.1 Score=32.63 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
+++.+++.+++.|+.+|..|..++..|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444433
No 117
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=80.16 E-value=5.9 Score=34.17 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 269 AEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (327)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~EN~~Lka 297 (327)
.|...|+.++.+|.++...|+.||..||.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666777777777773
No 118
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=80.15 E-value=15 Score=28.88 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|..++++|+..|..|...++..+++...+......-.+...+||.+++..
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys 52 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYS 52 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 577889999999999999999999999999999999999999998777554
No 119
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=79.94 E-value=8.7 Score=36.04 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020381 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQLS 317 (327)
Q Consensus 268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~ 317 (327)
-.||..|..++..+..++..+..||..|+.-.+.++. +..+|.|++|-+
T Consensus 124 L~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~-la~~ie~l~~~~ 172 (200)
T PF07412_consen 124 LEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQY-LAEVIERLTGQE 172 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccC
Confidence 3578888888888888888888888888875444433 233377777643
No 120
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=79.94 E-value=8.1 Score=32.31 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
..|..++..+++++..+..+|..|+.++..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345555555555556666667777777777764
No 121
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=79.86 E-value=34 Score=33.69 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQ-----------KYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~q-----------k~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|..||.+...|+.+|+.|..++..++. +...|+.+|..+++..+.|+..|+..
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReL 117 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIREL 117 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555556666555554443 33456778888888888888776654
No 122
>PRK04325 hypothetical protein; Provisional
Probab=79.79 E-value=14 Score=29.19 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQ 315 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~ 315 (327)
++..++.++..|+...+.+...+..|+.-+.. ...++..|++.|+..+.|+..
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~-------Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVAR-------QQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888887777776666666544433 246678888888887666544
No 123
>PRK04406 hypothetical protein; Provisional
Probab=79.51 E-value=14 Score=29.39 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+++.+||.++..++.-...|...+..-.+++..+..+=+.|..++..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788999999999999999998888888888888888888888777665
No 124
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=79.34 E-value=18 Score=37.95 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=52.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 020381 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES--------AVNNRILKADIETLRAKV 306 (327)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l--------~~EN~~Lkaql~~Lrakv 306 (327)
..++|.+.-+.-+| -.+.+.+|+.+++..+.|+....-+--.|..+..++ -+||..++++++.||..|
T Consensus 243 hv~km~kdle~Lq~----aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L 318 (575)
T KOG4403|consen 243 HVNKMMKDLEGLQR----AEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVAL 318 (575)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 33445444444433 335667777777766666555444444444444422 478999999999999999
Q ss_pred HHHHHHH-----hhcchhhhhhcc
Q 020381 307 TYYFIRI-----IQLSIFYIMWLR 325 (327)
Q Consensus 307 ~~av~r~-----~~~~~~~~~~~~ 325 (327)
..|-+++ -..-+.|+-||+
T Consensus 319 ~kAEkele~nS~wsaP~aLQ~wLq 342 (575)
T KOG4403|consen 319 EKAEKELEANSSWSAPLALQKWLQ 342 (575)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHH
Confidence 8884433 233445666765
No 125
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=79.22 E-value=15 Score=30.18 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 267 LRAEHSSLLKGLTDVN------QKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~------qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+..+|..|..++..|+ .+......||-.|+.++..|+...
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554 455677899999999999998765
No 126
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=79.14 E-value=11 Score=28.23 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 282 NQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 282 ~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
..++..+..+|..|+.++..|..
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333
No 127
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=79.03 E-value=12 Score=33.34 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRA---EHSSLLKGLTDVNQK 284 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~---EN~~L~~~l~~L~qk 284 (327)
..|.+...++..|+. .|..|..++..|+.+
T Consensus 34 ~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~ 66 (155)
T PF06810_consen 34 TQLKEADKQIKDLKKSAKDNEELKKQIEELQAK 66 (155)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 334444444444443 333444444433333
No 128
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.00 E-value=18 Score=35.34 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+...+.+++..+..++.+...|..++..+..+...+..+|..+++++..|..++..
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555555544433
No 129
>PRK00736 hypothetical protein; Provisional
Probab=78.73 E-value=15 Score=28.43 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
++|.+||.++..++.-...|...+..-.+++ ..|+.++..|..+++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4588888888888877777766665544444 4455666666666654
No 130
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=78.68 E-value=9.5 Score=33.93 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcchhhhhhc
Q 020381 255 AHLNELETQAGQLRAEHSSLL-----KGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRI-----IQLSIFYIMWL 324 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~-----~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~-----~~~~~~~~~~~ 324 (327)
....+|..++.+|+.|...+. .+-..++++++.++.|-..++++...-+.++...++.+ ++.--+|.+|.
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFFVLRFWY 119 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 344556666666666666543 34456777777887777777777777777776663322 23333444555
Q ss_pred c
Q 020381 325 R 325 (327)
Q Consensus 325 ~ 325 (327)
|
T Consensus 120 r 120 (161)
T PF04420_consen 120 R 120 (161)
T ss_dssp -
T ss_pred c
Confidence 4
No 131
>PRK00736 hypothetical protein; Provisional
Probab=78.67 E-value=19 Score=27.96 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRI 313 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~ 313 (327)
++.++..|+...+.+-..+..|+.-+.. -..+|..|+.+|+..+.|+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~-------Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAE-------QWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4555666665555555444444433222 2355666777666654444
No 132
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=78.66 E-value=7 Score=39.50 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (327)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lk 296 (327)
+...|+.||..|++++++|+.++..| ||..|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 34456667777777777777666666 555555
No 133
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=78.52 E-value=35 Score=27.88 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=58.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
-++...++.....=..|...+..||.++..|..|...-..+.-.+......+..||+.|+.++..=+..+
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i 75 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELI 75 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 4566677777777788899999999999999999999888888899999999999999988776655433
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.34 E-value=37 Score=33.56 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=44.0
Q ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 020381 227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL----KADIETL 302 (327)
Q Consensus 227 ~~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L----kaql~~L 302 (327)
.-|+.+.++.|-.++-... -=..|+..+.+++.++..++.....+..+..++..+++.++...... ..++..|
T Consensus 200 ~~d~~eL~~lk~~l~~~~~---ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~L 276 (312)
T smart00787 200 DCDPTELDRAKEKLKKLLQ---EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKL 276 (312)
T ss_pred hCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3456666666644443221 11233344666666666666666666666666666666655433222 3667777
Q ss_pred HHHHHH
Q 020381 303 RAKVTY 308 (327)
Q Consensus 303 rakv~~ 308 (327)
++++..
T Consensus 277 k~~~~~ 282 (312)
T smart00787 277 KEQLKL 282 (312)
T ss_pred HHHHHH
Confidence 777665
No 135
>PF15058 Speriolin_N: Speriolin N terminus
Probab=78.27 E-value=4.2 Score=38.04 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaq 298 (327)
.+.|.++++.|-.||++|++++. +..||..||.-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHH
Confidence 46788899999999999998885 66677777754
No 136
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.24 E-value=17 Score=35.78 Aligned_cols=64 Identities=27% Similarity=0.262 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQLSIF 319 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~~~ 319 (327)
.+...+.++...+.+-..|..++..|+.+|.....+...|..++.....++..+-+-+.|++.=
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 4556666677777777777788888888888888888888888888888888876656565543
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.19 E-value=22 Score=31.49 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+.++..++.....+...+..+..++..+......+.+++..|+
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 108 ESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 138
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.16 E-value=49 Score=29.32 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.-++.+++.+..++..+..+..+-..|...+.+.+.++..+..+-..++.+...|..++..
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555444444455555555555554444444444433
No 139
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.71 E-value=43 Score=36.24 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRA------------------------EHSSLLKGLTDVNQKYDESAVNNRIL 295 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~------------------------EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (327)
..++.+|.+||.++..++. .|..|+.+|.+|...|..+.++|..|
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 3566778888777666554 35566677777777777777666433
No 140
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.67 E-value=1.4 Score=36.63 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
.||+.|...+..|..+|..|..++..|+.++..+...+..|+..+..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 68999999999999999999999999888888887777777665543
No 141
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=77.60 E-value=20 Score=29.86 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+.|.+++.+--.+...|.+|..++..+..+...-.. +..++.++..+++.++..
T Consensus 17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~ 70 (106)
T PF05837_consen 17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKS 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHH
Confidence 445566666666666777777776666655544433 666778888888887776
No 142
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.34 E-value=27 Score=36.20 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 249 SR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.+.+=+.+|.+||.++..++.+.......+..+++++..+...=..|..+-.+-+.+|
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555444444444444444433333333
No 143
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=76.84 E-value=16 Score=33.39 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.+|++=..+...|...|.-|+.++.........|..++..|..+...|+..+..
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556667777777777777777777777777777777777776655543
No 144
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.57 E-value=19 Score=28.90 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
-++.||.+|.+.-.-..-|.-++.+|+++.+.+..|-..++...++|+
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 356667666654444444444444444444444444333333333333
No 145
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.19 E-value=19 Score=35.32 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=6.4
Q ss_pred HHHHHHhhh
Q 020381 38 ELEKFLQEV 46 (327)
Q Consensus 38 ~FqkfLeE~ 46 (327)
.++.||++.
T Consensus 15 sL~~FL~~~ 23 (325)
T PF08317_consen 15 SLQDFLNMT 23 (325)
T ss_pred CHHHHHHHh
Confidence 377788775
No 146
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=76.07 E-value=50 Score=28.32 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.--||.-.+..+..|+..++.+...+..|.++-..|+.....|..+|..+-+.+..|+++|..+
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677777777777777777777777777777777777777777777777777666
No 147
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=75.98 E-value=18 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
.+.++.+.+|+.+++.++.+|..|..++..|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667778888888888888887777665
No 148
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.98 E-value=22 Score=35.55 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
..|..-+.+.+.+|..|..++..|++++.++.-+|..||.++..++.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 45666677888888888888888888888888888888887777653
No 149
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=75.67 E-value=15 Score=40.72 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.||+..+..|..++..+..++..++.+|.-|+..+.....++..|.++++.||.+|-.+
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k 355 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK 355 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777888899999999999999999999999999999999999999999999888665
No 150
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=75.67 E-value=27 Score=37.35 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.+.+.|..=...+.+++..+..|++|...++.++..+..+...|..||..|..++..++..+...
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34334444445556667777777888888888888888888888888888888888877655444
No 151
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=75.56 E-value=58 Score=28.89 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 280 (327)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (327)
.....|++.+-+--.-+++.+..|+.++..+..+...|..+|..
T Consensus 34 e~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~ 77 (140)
T PF10473_consen 34 EMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDT 77 (140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555444444444443
No 152
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.31 E-value=54 Score=29.99 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaq 298 (327)
..+|+.++..|+.++..|..++..+..++..+...+..+++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~ 163 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE 163 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888877776666555443
No 153
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.31 E-value=9.1 Score=41.76 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 020381 296 KADIETLRAKVTYY 309 (327)
Q Consensus 296 kaql~~Lrakv~~a 309 (327)
|+.+..|..||++.
T Consensus 487 Kq~l~~LEkrL~eE 500 (697)
T PF09726_consen 487 KQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555443
No 154
>PRK09039 hypothetical protein; Validated
Probab=75.09 E-value=51 Score=32.79 Aligned_cols=6 Identities=17% Similarity=0.456 Sum_probs=2.5
Q ss_pred HHHHhh
Q 020381 115 RAYLKT 120 (327)
Q Consensus 115 ~a~Lk~ 120 (327)
|.||..
T Consensus 41 q~fLs~ 46 (343)
T PRK09039 41 QFFLSR 46 (343)
T ss_pred HHHHHH
Confidence 444443
No 155
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=75.01 E-value=33 Score=32.60 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
|+++...+..+-..|..+++....++..+..++..|+.|.+.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444444444444444444444444455555555555544444
No 156
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.91 E-value=62 Score=29.86 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+.++..|+...-+|..+...+..+......+...|+.++..|...|..+
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444455566666666666666555544
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.73 E-value=15 Score=35.03 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (327)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~ 294 (327)
-=+.+|++|+.+|..|+.+++.+..++..+.++-.++-.+=..
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888888888888777776544333
No 158
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=74.46 E-value=67 Score=33.87 Aligned_cols=8 Identities=38% Similarity=0.447 Sum_probs=3.6
Q ss_pred HHHHhhcc
Q 020381 310 FIRIIQLS 317 (327)
Q Consensus 310 v~r~~~~~ 317 (327)
+.++.|++
T Consensus 138 le~~a~lt 145 (514)
T TIGR03319 138 LERISGLT 145 (514)
T ss_pred HHHHhCCC
Confidence 44444443
No 159
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.44 E-value=46 Score=33.90 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=47.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV--------------NQKYDESAVNNRILKADI 299 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L--------------~qk~~~l~~EN~~Lkaql 299 (327)
-+.|.+.-|-|--|.-| +-+++-..+.++|+..|+.|..+|..+ ..-...+..||+.|+.++
T Consensus 75 ~kirk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566666666666555 344555556667777777777666543 334455678999999999
Q ss_pred HHHHHHHHHH
Q 020381 300 ETLRAKVTYY 309 (327)
Q Consensus 300 ~~Lrakv~~a 309 (327)
.+|...+...
T Consensus 151 ~~l~~e~~Ek 160 (401)
T PF06785_consen 151 DALQQECGEK 160 (401)
T ss_pred HHHHHHHhHh
Confidence 8888776443
No 160
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.12 E-value=70 Score=31.38 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
...|+..+..|+.+...|...+..+..-+..+......|+.++..|++....
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777888888888888888888888888888888888888777766553
No 161
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.01 E-value=16 Score=32.82 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.+|..+|..|+.+|..|...+..+..+...+......|+.+...|..+-...
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~ 143 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHEREREL 143 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666666666666666666666666666554444
No 162
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.86 E-value=16 Score=39.60 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL---KADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L---kaql~~Lrakv~~a 309 (327)
.+..+|+..+..|+.++..|..++..+..+...-.-.|+.+ ..++..|+.+|...
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777766665554433333333 34555555555444
No 163
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=73.75 E-value=17 Score=30.05 Aligned_cols=8 Identities=38% Similarity=0.547 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 020381 261 ETQAGQLR 268 (327)
Q Consensus 261 E~qV~~L~ 268 (327)
|.+|..|.
T Consensus 33 E~KV~~LK 40 (87)
T PF12709_consen 33 ETKVKALK 40 (87)
T ss_pred HHHHHHHH
Confidence 44444444
No 164
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.32 E-value=32 Score=30.88 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
...++..+..+++.+++++...+.|...||.|.+.|..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677788888888888888888888888887764
No 165
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=73.22 E-value=12 Score=40.41 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.+|-.+|.+|..|+.-|+.++...++--..++..++.|..++.++++++..+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999888888888888888888887777665443
No 166
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=72.71 E-value=8.4 Score=35.63 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
|-.|.+|..+++ -...++++.+|+.+|..|+.+.+.+.+.+.+|..++...
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 446667766666 355567888888888888887777777776665444433
No 167
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.37 E-value=82 Score=29.95 Aligned_cols=42 Identities=26% Similarity=0.470 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
++.--.+-+..+..|+.++..|+..|..|..++.++..++..
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 333334444566777777777777777777777766655543
No 168
>PRK12704 phosphodiesterase; Provisional
Probab=72.33 E-value=81 Score=33.30 Aligned_cols=7 Identities=43% Similarity=0.439 Sum_probs=3.0
Q ss_pred HHHHhhc
Q 020381 310 FIRIIQL 316 (327)
Q Consensus 310 v~r~~~~ 316 (327)
+.++.|+
T Consensus 144 l~~~a~l 150 (520)
T PRK12704 144 LERISGL 150 (520)
T ss_pred HHHHhCC
Confidence 3344444
No 169
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=72.13 E-value=29 Score=34.51 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
.|...|..++.+++++++.+..||..|.+.+.
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444555555555555555555555544443
No 170
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.98 E-value=20 Score=34.37 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+..|||.++..+..+...|+.++ ..+..+|-.|=.++.-|+
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev-------~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREV-------ESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 34667766666665555555444 456666666666555554
No 171
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=71.32 E-value=4.1 Score=29.47 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 270 EHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (327)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lkaq 298 (327)
.|+.|..++.++..++..|..||-.||.+
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLREL 43 (46)
T ss_dssp ---------------HHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 172
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=71.22 E-value=49 Score=26.05 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.+.|..|-.+-+.|....-.+...+..|+.+...++.+...|+.+++.+...+
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444433
No 173
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=71.13 E-value=92 Score=29.22 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|.||. ++..-..-..|.-..-++++..|...+..-+..-+....+-..+.++...|..|.+.++.++..|+..|...
T Consensus 103 ~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 103 VEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 455666666677777778888888888888888888888888888999999999999999999999888774
No 174
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=71.10 E-value=20 Score=30.64 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
.||-.|+.-...|..++..++++...|..||.+|-+=++.|
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 44444554445566666666666667777787777777665
No 175
>PRK00846 hypothetical protein; Provisional
Probab=71.09 E-value=31 Score=27.80 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
.++|.+||.++...+.-...|...+....+.+..+..+=+.|+.++.++..
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367888888888888888888888888888888888777778877777653
No 176
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=71.05 E-value=39 Score=33.63 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
-|+.+|-....+.++.++|.....-+..-.....+-..+.+++..+..||--|++++.....|.-
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888887777666666666677778888888999999999999988887764
No 177
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=70.95 E-value=22 Score=34.16 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=29.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
|.|=+.+|.|==..-|+ -++.+..|..+|+.|+.+|-.|.+++.-|+
T Consensus 88 RDRFR~Rn~ELE~elr~-~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRK-QQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33335555554444422 235677888888888888888888876554
No 178
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=70.93 E-value=32 Score=37.45 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFI 311 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~ 311 (327)
.+|.+||.+-++|..|.+++..+++++++.+.....|-..||-.+++-+..++.++.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999988888888999998888888777643
No 179
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=70.86 E-value=31 Score=35.97 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRI 313 (327)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~ 313 (327)
||..|...++.-.+-+..-..||..|.+...+|..+|...|.|+
T Consensus 443 EnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrL 486 (593)
T KOG4807|consen 443 ENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRL 486 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 33334333333333334444555555555555555555555544
No 180
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=70.81 E-value=36 Score=33.48 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..|+.+..++..|+.||..+..+....+..+..+..|+..+..++..+..++...
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777778888888888888777777888888888888888777776554
No 181
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.80 E-value=55 Score=34.33 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..+.|+.++.+|..||..|+..+..|+..+..+..+-..+-.+++.||-++...
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~e 351 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICE 351 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 355667789999999999999999999999999999999999999988766544
No 182
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.76 E-value=12 Score=27.21 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
..+..+..++..|..+|..|+.++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666667777777777777777753
No 183
>PHA02562 46 endonuclease subunit; Provisional
Probab=70.49 E-value=75 Score=32.56 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 280 DVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 280 ~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.++.++..+..+...|+.++..|+..+
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 184
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=70.48 E-value=30 Score=32.93 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020381 269 AEHSSLLKGLTDV-NQKYDESAVNNRILKADIETLRAKVTYYFIRII 314 (327)
Q Consensus 269 ~EN~~L~~~l~~L-~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~ 314 (327)
..-..++.++..+ ..++..+..||..|+-+++.|+..+..-+++++
T Consensus 101 ~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~ 147 (220)
T KOG3156|consen 101 VDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTT 147 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334555555444 677889999999999999999999988777664
No 185
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.47 E-value=91 Score=32.62 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTD 280 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (327)
++++.++|..+..|+.||..|..+...
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888887766654
No 186
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.45 E-value=16 Score=38.41 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVN-QKYDESAVNNRILKADIETLRAKVTYYFIRI 313 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~-qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~ 313 (327)
+.|..+-+.|+.....+..++...- ....++..|-+.|+.++..|+..|.....|+
T Consensus 83 ~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 83 EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665555443 2334555566666666666666666654444
No 187
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=70.40 E-value=1.1e+02 Score=29.98 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhh
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY---FIRIIQ 315 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a---v~r~~~ 315 (327)
++..+.+++.++.+-....+++.++++++......=..|+.+-..|...+..+ |+++.|
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444445555555555555555555444444444444444444333 555544
No 188
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.29 E-value=46 Score=31.63 Aligned_cols=28 Identities=32% Similarity=0.620 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 277 GLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
++.+++.+|......+..|..++..|+.
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk 110 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRK 110 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334444444444444444444444443
No 189
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.03 E-value=54 Score=36.92 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020381 288 SAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 288 l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+...|..|..++++|..|++..
T Consensus 435 ~nak~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665554
No 190
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.98 E-value=45 Score=30.83 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+.+..|+.++..++.....|..++..|++++..+...-..|.+++...++..
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~ 150 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRL 150 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777666666666665555543
No 191
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.74 E-value=53 Score=25.85 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|.+=..+|.+|..|-..|....-.+...+..|...|..+..++..|..++...
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888888888777777777888888888888888887777665
No 192
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=69.74 E-value=47 Score=26.24 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
+|......-..+|+.|..++..|.+++.
T Consensus 32 ~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 32 DLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444433333333
No 193
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=69.74 E-value=21 Score=29.73 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
+..+..++..+..+|..++.+.-.+...|+.|-+++.+|..
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~ 45 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAE 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444455554444444443
No 194
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=69.62 E-value=22 Score=29.85 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 286 DESAVNNRILKADIETLRA 304 (327)
Q Consensus 286 ~~l~~EN~~Lkaql~~Lra 304 (327)
..++.+|+.|..++..++.
T Consensus 25 ~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 25 SELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 195
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.12 E-value=67 Score=36.98 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 244 ESARRSRRRKQAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~L~~EN-~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++-...| +++..++.|+.+|..++.+- ..|..++.+...++..|..|+..|..++..|+.++.+.
T Consensus 362 ~~~n~i~-~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 362 EIENSIR-KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 34455677777777777554 66777777777777777666666666666666555554
No 196
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=69.07 E-value=56 Score=27.19 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQL--RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 255 ~~l~eLE~qV~~L--~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
.++..+|.+++.| +.+-..|..++++++.++. .|.+++..+...+.
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~-------~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELK-------ELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHH
Confidence 3444455555554 4444444444444444443 34455555544443
No 197
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.02 E-value=54 Score=37.70 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=47.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 238 RMLSNRESARRSRRRKQAHLNELETQA-GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV-~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
....+=...+....+....+.+++.+. ..+..+-.++..++..|+++...++..+..|+.+...+..++..
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666667777777777776 66667777777777777777777777777777777766655543
No 198
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=68.85 E-value=8.8 Score=31.55 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
.|+.+++.|...+..++.+|..|..++...+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888888888888888887776554
No 199
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=68.51 E-value=19 Score=33.21 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
-+.=.|.|+..|+.+|..|..+++.|. ....+|..+-..+..|.-+|..+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~l~LL~a 90 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLVLALLAA 90 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566788888888888888887655 56678888888888887766555
No 200
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.43 E-value=62 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLL 275 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~ 275 (327)
+++|+..++.|+.+...+.
T Consensus 445 ~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 445 LEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333333
No 201
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=68.21 E-value=75 Score=30.58 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+...+..|+.++..++.+-..|..++..+..++..+..+=..|+.++..++..+..
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666666666655555555555544443
No 202
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.19 E-value=19 Score=29.22 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
.+..|..++..++.+...+..+|..|+.+++
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666677777777777777777776654
No 203
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.17 E-value=22 Score=27.01 Aligned_cols=30 Identities=10% Similarity=0.345 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
+..++..+..++.||+.|+..++.+.+-+.
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555444443
No 204
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=67.99 E-value=74 Score=36.08 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Q 020381 230 SVDDKRARRMLSNRESARRSRRRKQA--------HLNELETQAGQLRAEHSSLL---------------------KGLTD 280 (327)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~--------~l~eLE~qV~~L~~EN~~L~---------------------~~l~~ 280 (327)
..+.+++-|.+.|+-.-+.+-.-|.+ .+.+-+.+++.+..+-..|. ..|++
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~ 180 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNE 180 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhH
Confidence 35677888888887666555444322 22222222332222222222 23445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 281 VNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 281 L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++.+|+.+..||..++.+++.+-.+++..
T Consensus 181 ~~~q~~tkl~e~~~en~~le~k~~k~~e~ 209 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREKKALEEKLEKFKED 209 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777776666665544
No 205
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.98 E-value=87 Score=34.69 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.+.||.+...|+.|...++.+=..+-+.|.+|+.||-.|+.+|..|+
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 46666666667777777766667777778888888888888887777
No 206
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.46 E-value=37 Score=33.61 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=38.5
Q ss_pred CCCchHHHHHHHHHHhhH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 227 GLDSVDDKRARRMLSNRE-----SARRSRRRK-QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 227 ~~d~~e~KR~RR~lsNRE-----SArRSR~RK-k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
.+...++|=.+=|+.|-. ++-...--- |..|++||..+.+|+.++......+..+++.+..+..+-..|+.+|.
T Consensus 85 ~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777888832 111111111 23344555555555555544444455555555555444444444444
Q ss_pred HHHHHH
Q 020381 301 TLRAKV 306 (327)
Q Consensus 301 ~Lrakv 306 (327)
..-..+
T Consensus 165 ~rdeli 170 (302)
T PF09738_consen 165 QRDELI 170 (302)
T ss_pred HHHHHH
Confidence 443333
No 207
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=67.42 E-value=9.7 Score=29.37 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLL 275 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~ 275 (327)
+|.+|+.++.+|+.||.-|+
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444
No 208
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.35 E-value=52 Score=32.83 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
|-++.|..|-.+|..|+.....+..+...|.+++.....-...|.+++..|+.|...
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666665555555555666666655555555566666666655544
No 209
>PRK00106 hypothetical protein; Provisional
Probab=67.16 E-value=1.2e+02 Score=32.38 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=3.5
Q ss_pred HHHHhhcc
Q 020381 310 FIRIIQLS 317 (327)
Q Consensus 310 v~r~~~~~ 317 (327)
+.++.|++
T Consensus 159 Le~~a~lt 166 (535)
T PRK00106 159 LERVAALS 166 (535)
T ss_pred HHHHhCCC
Confidence 34444443
No 210
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=66.94 E-value=8.9 Score=39.90 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
++|..+|..|..+|..|+.+++.+.-+|..+..||+-|+.--.++++|.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQara 94 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARA 94 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhcc
Confidence 6788889999999999999999999999999999998886666666554
No 211
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=66.87 E-value=65 Score=28.64 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++.+..|.++-..|+..-=...+++..++|+ ..|+.+|..|.+++++|+..+..+
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~ 100 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRL 100 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777778888888766 568999999999999999776554
No 212
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=66.85 E-value=29 Score=36.50 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
..|.+-+.+.++|+.+.+.|+.+++.+..+...++.+=..|..++..|+.++.
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777776666666666666666677777766663
No 213
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=66.29 E-value=1e+02 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE-SAVNNRILKADIETLR 303 (327)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~-l~~EN~~Lkaql~~Lr 303 (327)
.-...+.+|+.+...|+.+...|..++..+.++... ...++...+.++..|+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk 176 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLK 176 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666665555543 3344444444444444
No 214
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.92 E-value=65 Score=36.29 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 250 R~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
+++-...++.|.+++..|+.||..|..++.+.......+.-++..||.++.
T Consensus 666 I~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 666 IRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444455555555555555555555555555555555555555544
No 215
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.62 E-value=51 Score=25.39 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.+..|-...+..+-.+..+++.....|+.|..+|..|+..+..
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777888888888999999999888887654
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.31 E-value=96 Score=32.75 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|..++..+..+...+.-+|..|+.....++.+++..
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444455555556666666555555555443
No 217
>PRK10698 phage shock protein PspA; Provisional
Probab=64.89 E-value=81 Score=29.52 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
.+..|+.++...+..-..|...+..|+.++..+...-..|.++...-+++.+
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~ 151 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD 151 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666667777777777777766666666665555554443
No 218
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=64.87 E-value=25 Score=27.25 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
.....+..++.++..++.||..|..++..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556778888888888888888888877554
No 219
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=64.83 E-value=43 Score=27.47 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
.+..++..|..+++.+..+|..|..+|..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677888899999999999999999998874
No 220
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=64.68 E-value=47 Score=32.98 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQ---AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk---~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
-.||+.|++.--..-+|-|..+. -.+++|+.+-++|+..-.+|.+++..|++-+.+
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666522222233333333 344555566666666666666666666654443
No 221
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.51 E-value=62 Score=24.74 Aligned_cols=34 Identities=9% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
.+++|..+|..|..+...|...+..++.....+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555555554444433
No 222
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=64.01 E-value=57 Score=29.66 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY-DESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~-~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..++.|+..++.|......+...+..+..++ +....+=..|..++..|..-+.|+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv 134 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMV 134 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999988888888888887776 334445677888888888888776
No 223
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=63.69 E-value=65 Score=31.61 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=45.6
Q ss_pred HHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 020381 234 KRARRMLSNRESARR-SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR-AKVTYY 309 (327)
Q Consensus 234 KR~RR~lsNRESArR-SR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr-akv~~a 309 (327)
|-.-.-|+|||..=. +|.||+ . |..++..|+...- -..+|..|++++..++.+|-+..+++..+. .+++.+
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~-~---l~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa 199 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRR-K---LQDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEA 199 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhH-H---HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHH
Confidence 344456788886644 444443 2 3344445544322 245788899999999999999999888876 445555
No 224
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=63.54 E-value=53 Score=34.00 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH---HHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL----------------RAEHSSLL---KGLTDVNQKYDESAVNN 292 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L----------------~~EN~~L~---~~l~~L~qk~~~l~~EN 292 (327)
+.|..||+...-+-=||.|.+=...|.+|-.-|-.. ..=+.+|+ .+..++.++-..|+..|
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n 306 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTN 306 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 455556667777777888888778888887654433 11122222 23334445555666777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020381 293 RILKADIETLRAKVTYY 309 (327)
Q Consensus 293 ~~Lkaql~~Lrakv~~a 309 (327)
+.|..++++|...+...
T Consensus 307 ~~L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 307 QELALRIEELKSEAGRH 323 (411)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777665544
No 225
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.30 E-value=49 Score=32.35 Aligned_cols=31 Identities=10% Similarity=0.285 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
..++++..++..++.++..+..++..++.++
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333333
No 226
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.24 E-value=89 Score=29.77 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.....+|.+++.+.+.|..|-..+..+|..+++.+..++..=..++.+-...+
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999888888888888877777655444444444444
No 227
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=62.59 E-value=1.1e+02 Score=27.59 Aligned_cols=60 Identities=17% Similarity=0.330 Sum_probs=28.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 241 SNRESARRSRRRKQAHLNELETQ-------AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~q-------V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.+-+.|...-.||++.++.|... +..++.+...+..++..++.++..+. ..++.++....
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf~ 201 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERFE 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33344445555555555444422 44455555555555555555555442 33444444433
No 228
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=62.57 E-value=29 Score=37.22 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
.+|.+|+.+-++|+.||..|+.+|..|..+.
T Consensus 309 ~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 309 ARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 4444555555555555555555555544333
No 229
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=62.53 E-value=66 Score=28.05 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
-...+.+|+.+|..|..|--.=..+++++-.+.+.+..+|+.|+..+..|..+|..
T Consensus 12 He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRa 67 (120)
T PF10482_consen 12 HEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRA 67 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456667777777776655555666666666667777777777777777666554
No 230
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=62.43 E-value=1.3e+02 Score=28.24 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..-|+.|-..|..++..-+.+...++.|+..+..++..=+.+.+..
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~ 181 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSF 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458888888988888888888889999888888887777777665
No 231
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=62.18 E-value=9.1 Score=27.68 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l 278 (327)
++...|++=|+..-... ..+.+||.++..|..||-.|+.++
T Consensus 4 k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 44455555555444433 446666666666666666665544
No 232
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=61.91 E-value=1.1e+02 Score=28.62 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 292 NRILKADIETLRAKVTYY 309 (327)
Q Consensus 292 N~~Lkaql~~Lrakv~~a 309 (327)
...+..+|..|..+|+.+
T Consensus 171 e~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666666655
No 233
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=61.69 E-value=9.9 Score=37.20 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.++.++|.+|+.|+.-|..|..+|+.=..-|..+...-..+|+++.++..|++.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~k 270 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKK 270 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999999877777766655556678888888777653
No 234
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.68 E-value=1.1e+02 Score=26.71 Aligned_cols=63 Identities=21% Similarity=0.368 Sum_probs=34.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 238 RMLSNRESARRSRRRKQAHLNELE-------TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE-------~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+++..-+.+...-.+|++.++.|+ .+|..|+.+...+..++..++.++..+ +..++.++..+.
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~ 183 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFH 183 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 444445566666666666555554 245555555566666665555555444 334445555443
No 235
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=61.35 E-value=78 Score=29.35 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.-|++-|+.||.+|.+.+.-..+....|...+.-......-....+.++..|+..|+.+
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a 121 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAA 121 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999988888888888887777777777777788888888777766
No 236
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=61.27 E-value=64 Score=34.00 Aligned_cols=55 Identities=27% Similarity=0.340 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRA-----------EHSSLLKGLTDV------------------------NQKYDESAVNNRILKADI 299 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~-----------EN~~L~~~l~~L------------------------~qk~~~l~~EN~~Lkaql 299 (327)
..+..|-.++..|+. ||..|..+|.+. +.++..++.||..|++++
T Consensus 385 rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqi 464 (488)
T PF06548_consen 385 RFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQI 464 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544 898888877632 355667789999999999
Q ss_pred HHHHHHHHHH
Q 020381 300 ETLRAKVTYY 309 (327)
Q Consensus 300 ~~Lrakv~~a 309 (327)
++|..|-.+-
T Consensus 465 ekLK~kh~~E 474 (488)
T PF06548_consen 465 EKLKRKHKME 474 (488)
T ss_pred HHHHHHHHHH
Confidence 9999988776
No 237
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=61.10 E-value=1.2e+02 Score=26.86 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
|..++..+......-+..-+.|+-+.++||
T Consensus 66 Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 66 LRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 333333333333333334444444444444
No 238
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=60.79 E-value=48 Score=30.84 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..|.+++..+...|-.+...+..|+..|..
T Consensus 178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~ 207 (221)
T PF05700_consen 178 RYLEQRWKELVSKNLEIEVACEELEQEIEQ 207 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555544443
No 239
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=60.57 E-value=49 Score=37.98 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
+..++++|+..+..|+.||..|..+|..|..
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888887765
No 240
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.38 E-value=72 Score=34.40 Aligned_cols=45 Identities=29% Similarity=0.472 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
.|++|+.++..++.+...|..++..+..+......++..|.+++.
T Consensus 336 ~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 336 QLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555555554
No 241
>PRK04863 mukB cell division protein MukB; Provisional
Probab=60.22 E-value=1.4e+02 Score=35.66 Aligned_cols=21 Identities=5% Similarity=0.028 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRK 253 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RK 253 (327)
.++.+.+.+.++.|++.+.-+
T Consensus 320 e~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 320 NEAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677776665543
No 242
>PRK10963 hypothetical protein; Provisional
Probab=60.04 E-value=30 Score=32.19 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|.|++.|+.+|..|..++..|. ....+|..+-.++..|.-+|..+
T Consensus 43 ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~Ll~a 87 (223)
T PRK10963 43 EWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLAAA 87 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555566666666655555443 34556666666666666555433
No 243
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.03 E-value=89 Score=25.07 Aligned_cols=20 Identities=20% Similarity=0.121 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLL 275 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~ 275 (327)
+|.+||.++..-+.-..+|.
T Consensus 9 Ri~eLE~r~AfQE~tieeLn 28 (72)
T COG2900 9 RIIELEIRLAFQEQTIEELN 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555554443333333
No 244
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.00 E-value=1.1e+02 Score=26.81 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=46.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL-------KGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~-------~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
-..+.+.--..+=.-|.++..++..++..+...+.+...|. .++..++.++..++.+=..++.++..+...++
T Consensus 97 ~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 97 EYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555666666666666666665555553 36667777777777666667777777766665
Q ss_pred HHHH
Q 020381 308 YYFI 311 (327)
Q Consensus 308 ~av~ 311 (327)
.-+.
T Consensus 177 ~El~ 180 (218)
T cd07596 177 EELK 180 (218)
T ss_pred HHHH
Confidence 5543
No 245
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=59.91 E-value=1.8e+02 Score=28.93 Aligned_cols=71 Identities=24% Similarity=0.372 Sum_probs=32.7
Q ss_pred HHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 235 RARRMLSNRESARRSRRRK-QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 235 R~RR~lsNRESArRSR~RK-k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
..|.-+.+..++-++.+.. -+.+.+|..++..|+.+-..+..++..+..+...+-..=..|..++..|+.+
T Consensus 27 ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~ 98 (294)
T COG1340 27 EKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555554432 2344444455555555444444444444444444443333344444444433
No 246
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.90 E-value=1.4e+02 Score=29.52 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
+..+.|.+||.+...|..|...|..+...+.++-...-.+...+..++..+
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~ 111 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEF 111 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555444444444444444333333
No 247
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.69 E-value=1.4e+02 Score=34.56 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++.|+.|...|..++..+++++..+..+=..|+.++..|+++|..+
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444455555555555555555555555666666666555544
No 248
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=59.64 E-value=38 Score=28.53 Aligned_cols=7 Identities=29% Similarity=0.268 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020381 273 SLLKGLT 279 (327)
Q Consensus 273 ~L~~~l~ 279 (327)
.|..++.
T Consensus 84 ~l~~~~~ 90 (118)
T PF13815_consen 84 QLEERLQ 90 (118)
T ss_pred HHHHHHH
Confidence 3333333
No 249
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=59.59 E-value=75 Score=26.63 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGL-TDV-------NQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l-~~L-------~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
..++..+..+..|...|...| .+. +.....+...|..|+.++...+.
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~ 65 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA 65 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333 333 33334444555555554444443
No 250
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.43 E-value=87 Score=29.68 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.||.++..++.+...+...+..|+.....+...=..|+++...|.++.
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444333
No 251
>PRK14127 cell division protein GpsB; Provisional
Probab=59.09 E-value=76 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
++|+++-..++.|..||..|..++..|+.++..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555444444444443333
No 252
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=59.09 E-value=69 Score=32.25 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=7.5
Q ss_pred CChHHHHHHHhhhh
Q 020381 109 VDSDEYRAYLKTKL 122 (327)
Q Consensus 109 ~dp~~y~a~Lk~kL 122 (327)
+.-.+|=+.|++-|
T Consensus 61 ~~~~eYv~~l~kaL 74 (342)
T PF06632_consen 61 MEVEEYVQELKKAL 74 (342)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44556666666544
No 253
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=58.99 E-value=65 Score=29.52 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
|..++++....|..|...+..|+..+..
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777666
No 254
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=58.98 E-value=82 Score=28.45 Aligned_cols=56 Identities=11% Similarity=0.251 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
-.+..+++++.|.-|+-.=++|-....+|..++..-+.....+..+|+.+..++..
T Consensus 82 a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 82 AEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888888777777777777777666555443
No 255
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=58.88 E-value=95 Score=31.16 Aligned_cols=64 Identities=23% Similarity=0.316 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLL--------------KGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 246 ArRSR~RKk~~l~eLE~qV~~L~~EN~~L~--------------~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|.-|-.=+--++.|..+...|+..+..+. .....|.+-+.....+|..|+.++..|+.++..+
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333445555555555555444443 1223444555667778888888888888887766
No 256
>PRK11546 zraP zinc resistance protein; Provisional
Probab=58.85 E-value=71 Score=28.53 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFI 311 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~ 311 (327)
.....+|..++-.-+.|-..|...-.-=.+++..+..|...|+.++.++|.++...+.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~ 117 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMA 117 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444444566778888888888888888776654443
No 257
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.75 E-value=1.4e+02 Score=29.72 Aligned_cols=51 Identities=12% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+-|..++..|+.....|.+++.+....+..+......|+.++..|+..|+.
T Consensus 115 d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444555555555555555543
No 258
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=58.72 E-value=1e+02 Score=25.41 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020381 287 ESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 287 ~l~~EN~~Lkaql~~Lrakv 306 (327)
.+..+...|+.++..|...|
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333
No 259
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.38 E-value=1.2e+02 Score=32.97 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLN----ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~----eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.|.|+.|--+-|-..-..+=.++...+. .+|.+--.|+.|...++-+-+.|-+.|..|+-||=.|..++..||
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR 190 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR 190 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 3566666666665544444444433332 244444556666666666666667777777777777777777776
No 260
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=58.29 E-value=28 Score=36.57 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAH----------LNELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~----------l~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
...|+.|-|++--||-|+.+.-=..+ =.+|..+|++|+.+|..|..+|..|
T Consensus 252 rvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 252 RVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 45667777888888877777654433 2567788888888888888777543
No 261
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=58.28 E-value=99 Score=25.05 Aligned_cols=51 Identities=25% Similarity=0.385 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~q---k~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|..+++.|+.+-..+.+++..+.. ....+..+=..|+.++..|...+..+
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544 24555566666677777766666655
No 262
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.24 E-value=1.1e+02 Score=31.95 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
+-.|...|+.|-..+...++...-.++.|..||..|+.+.-..++
T Consensus 32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433333
No 263
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=58.17 E-value=59 Score=26.77 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
+|...-.||..|+.++..++.=+ ...+-..|-+++..|+.+
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 34456789999999998877666 556888888999998865
No 264
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.15 E-value=95 Score=32.78 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=30.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELET-QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~-qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+++.+++. |++..+..-..+..+...+.+....++.+-..+...+.+|..|++..
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555 44444444444445555555555555555555556666666666555
No 265
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.04 E-value=1.3e+02 Score=31.27 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
+..-...+..++..+..+...+..+=+.|+.++..|+.++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444555555544443
No 266
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.60 E-value=67 Score=30.56 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=29.5
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNEL---ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 255 ~~l~eL---E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
.|+++| ...++.|+.....+..+..........+..|=..|+.++..+|.-
T Consensus 50 ~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 50 AHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 455666666666666666555555555555556666666666544
No 267
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=57.54 E-value=2e+02 Score=28.29 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLN-ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~-eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+|.|-.-|.+-.+.--=++-.|-|.-.- +|....++-..--.+|..++.+|+.+.+++.-.=.-||+.+..|-.||..-
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eR 91 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRER 91 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHH
Confidence 4555555666666666666666665444 566555555555566777777777777777666677777777777776554
No 268
>PRK14160 heat shock protein GrpE; Provisional
Probab=57.24 E-value=92 Score=29.43 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
..+..|+.++..|+.++..|..++..++.++..+.++..-+|.+...
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777776665555555444433
No 269
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=57.06 E-value=72 Score=33.53 Aligned_cols=8 Identities=13% Similarity=0.331 Sum_probs=3.1
Q ss_pred HHHHHhhh
Q 020381 114 YRAYLKTK 121 (327)
Q Consensus 114 y~a~Lk~k 121 (327)
||.|+..|
T Consensus 155 eqef~vnK 162 (552)
T KOG2129|consen 155 EQEFFVNK 162 (552)
T ss_pred HHHHHHHH
Confidence 33344333
No 270
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=57.04 E-value=34 Score=33.22 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020381 283 QKYDESAVNNRILKADI 299 (327)
Q Consensus 283 qk~~~l~~EN~~Lkaql 299 (327)
.+...++.||..||..+
T Consensus 90 ~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 90 EEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455666666666544
No 271
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=56.94 E-value=1.2e+02 Score=26.90 Aligned_cols=17 Identities=47% Similarity=0.548 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020381 291 NNRILKADIETLRAKVT 307 (327)
Q Consensus 291 EN~~Lkaql~~Lrakv~ 307 (327)
+|..|+++++.|.++..
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44445555554444443
No 272
>PRK12705 hypothetical protein; Provisional
Probab=56.80 E-value=2.7e+02 Score=29.63 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=2.9
Q ss_pred HHHHhhc
Q 020381 310 FIRIIQL 316 (327)
Q Consensus 310 v~r~~~~ 316 (327)
+.++.|+
T Consensus 132 Le~ia~l 138 (508)
T PRK12705 132 LYRVAGL 138 (508)
T ss_pred HHHHhCC
Confidence 3344443
No 273
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=56.74 E-value=1.3e+02 Score=34.57 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
++.++..++..|+.....+..++..+.+.+..+..+-..++.++..++.++
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 490 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555555555555555555444443
No 274
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=56.69 E-value=1.7e+02 Score=33.99 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcchhhhhhcc
Q 020381 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY--FIRIIQLSIFYIMWLR 325 (327)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a--v~r~~~~~~~~~~~~~ 325 (327)
.++-..|..|..++....++.+.+..+|...++++..++...... --.+.+.+.+|--.||
T Consensus 261 ~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~ 323 (1109)
T PRK10929 261 VAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALR 323 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 333456888889999999999999999998888888888666543 2244566666655544
No 275
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=56.47 E-value=1.8e+02 Score=27.44 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQLSI 318 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~~ 318 (327)
+..|+..++.|..+-.........+..........=..|...+..+...+...+..+.+++.
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45555555555555555444444555555555555556666666666666666666655544
No 276
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=56.36 E-value=1.5e+02 Score=26.40 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..|+.+...|...+..|...+..+..|+..|.+.++..+.+|...
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555555555555443
No 277
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=56.21 E-value=1e+02 Score=32.94 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=58.7
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 229 d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.+.+--|.+|+-.. -..+.+|-.+.+.+.+..+...+.+-..|--.|...+.++.....+|+.++.+.+.|..+++.
T Consensus 26 ~e~ef~rl~k~fed---~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 26 NEDEFIRLRKDFED---FEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred cHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34455555555433 233334445666777777888888888899999999999999999999999999999998876
Q ss_pred H
Q 020381 309 Y 309 (327)
Q Consensus 309 a 309 (327)
.
T Consensus 103 i 103 (604)
T KOG3564|consen 103 I 103 (604)
T ss_pred H
Confidence 4
No 278
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=56.20 E-value=79 Score=36.39 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=45.1
Q ss_pred HHHHhhHHHHHHHHH----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 238 RMLSNRESARRSRRR----KQA------HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 238 R~lsNRESArRSR~R----Kk~------~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
-+++++..|.|.+.- +.. .......++++|+.|.+.+..+|..++..|....-.|+.|+.+...|..+|.
T Consensus 414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~ 493 (1041)
T KOG0243|consen 414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ 493 (1041)
T ss_pred HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666664321 111 2445556677777777777777777777777666777777777766666554
Q ss_pred HH
Q 020381 308 YY 309 (327)
Q Consensus 308 ~a 309 (327)
..
T Consensus 494 ~~ 495 (1041)
T KOG0243|consen 494 NK 495 (1041)
T ss_pred HH
Confidence 43
No 279
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=56.01 E-value=1.4e+02 Score=29.54 Aligned_cols=33 Identities=21% Similarity=0.079 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (327)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (327)
++.+|+.+++.++.....+...+..|+.-|..|
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 344444444444444444444444444444444
No 280
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.99 E-value=1.9e+02 Score=28.26 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+..-+-....+|..+.+++..-++....+..+...|++++++|+.....
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445556678999999999999999999999999999999999977763
No 281
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=55.94 E-value=53 Score=34.61 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
.+.+.+...+..++....++..++..+..++..+...=+.|+.++++
T Consensus 446 ~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 446 KQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666665
No 282
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.85 E-value=47 Score=35.72 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
.|+..++.+...+...-..|..++.....++..+..+|..|+.++
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444433
No 283
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=55.65 E-value=1.1e+02 Score=24.78 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
.+|..++..-+.|...|..-++.|+.++.....-|..|..+...++..
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555666666666666666666666666666677777776666654
No 284
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.63 E-value=50 Score=36.70 Aligned_cols=50 Identities=28% Similarity=0.405 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLK---------------------GLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~---------------------~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
..+|.++..++..+..||..|.. ++..|..++..++-||..||-++..|.
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~ 161 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS 161 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777776665 344566666777777777776666555
No 285
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.60 E-value=85 Score=29.03 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.....++.....+...+..++..|..++..|..+|++
T Consensus 153 k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 153 KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666677777777777777777665
No 286
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=55.40 E-value=1e+02 Score=33.78 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+..|..++..|+.+...|..++..+.+.+.....++..+..++..+...+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 292 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENL 292 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555444333
No 287
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=55.37 E-value=83 Score=25.85 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.|+.|..-+..|+..|..|..+| ..|...|+..|.++.+..
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L-------~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQL-------QELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555444 456666776666665443
No 288
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=55.32 E-value=39 Score=29.71 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lka 297 (327)
+...|..+..|+.|...=-.++..|++++..+...|..|..
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455555555555555555566666666666666654
No 289
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.19 E-value=62 Score=26.23 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=28.1
Q ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 228 LDSVDDKRARRMLSNRESARRSRRRKQ----AHLNELETQAGQLRAEHSSLLKGLT 279 (327)
Q Consensus 228 ~d~~e~KR~RR~lsNRESArRSR~RKk----~~l~eLE~qV~~L~~EN~~L~~~l~ 279 (327)
+...|....-+.+.. +-.+-|.||. ..+..|..++..|..+|..|..++.
T Consensus 46 Ls~~eL~~LE~~Le~--aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 46 LSLKELQQLEQQLES--ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred cchHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444333 3444555553 3566677777777777777776653
No 290
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=54.95 E-value=2.3e+02 Score=28.28 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQ--------------KYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~q--------------k~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+-..++..|..||+.|......|.. ++..++......|.+++.|...|+..
T Consensus 57 ~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 57 EEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555677777777766665543 34444556666677777777666554
No 291
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=54.87 E-value=69 Score=31.69 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
-....|..||..|+..|..++.++...+.++..|
T Consensus 78 ~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 78 NEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666777777777777777776666665554
No 292
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=54.49 E-value=1.2e+02 Score=28.55 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 020381 288 SAVNNRILKADIETLR 303 (327)
Q Consensus 288 l~~EN~~Lkaql~~Lr 303 (327)
+..||+.|++++..|+
T Consensus 74 l~~en~~L~~e~~~l~ 89 (276)
T PRK13922 74 LREENEELKKELLELE 89 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 293
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=54.32 E-value=74 Score=26.74 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
|...+..+.+++..+..++..|+..+.++..+++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k 111 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIK 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 294
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=54.16 E-value=75 Score=34.60 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN 292 (327)
|+.++.++..-+.+......++.+++.+-.-|.+-+
T Consensus 102 I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~ 137 (632)
T PF14817_consen 102 IESREREVSRQEASREQMLDKISDSRHKQLLLEAYS 137 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443333333
No 295
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=53.92 E-value=55 Score=33.24 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l 278 (327)
+.++..|+.++..|..++
T Consensus 28 ~~~~~~~~~~~~~~~~~~ 45 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQ 45 (398)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444443333333
No 296
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.79 E-value=1.4e+02 Score=28.66 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
|-.++-|+-+|---.+|.+++.. .+.+...|..++..+..+.... |+.||++++...
T Consensus 152 K~vlk~R~~~Q~~le~k~e~l~k-------~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 152 MGVIKRRDQIQAELDSKVEALAN-------KKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34555555444444444444444 4454556666666666665555 667888777655
No 297
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=53.60 E-value=58 Score=34.85 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
|..+..+...+..||..|..+|.+++++...+..||..|.+.+
T Consensus 221 l~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666666666666666665554443
No 298
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=53.49 E-value=1.9e+02 Score=27.52 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..|+.+......+...|..++..+......+..+...-..+...|+..|..+
T Consensus 64 ~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 64 QRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555666666666666555555555555555555544
No 299
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=53.41 E-value=1.2e+02 Score=28.30 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (327)
.|...|+..+..|+.+...+++++.+++.+
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~ 165 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRE 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666665543
No 300
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=53.31 E-value=1.8e+02 Score=26.48 Aligned_cols=43 Identities=28% Similarity=0.299 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
..|+.++..+...-..|...+..+..++..+..+=..|+++..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433
No 301
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=53.09 E-value=1.6e+02 Score=30.48 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
++.+|..+-..-+..|+.|-..|.++++.-..+...++.+...|..+++.-+.+-
T Consensus 129 ~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RH 183 (561)
T KOG1103|consen 129 AHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRH 183 (561)
T ss_pred HHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444446678888888998888888888888888888888877766443
No 302
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=52.97 E-value=1.5e+02 Score=29.00 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=7.4
Q ss_pred ChHHHHHHHhhh
Q 020381 110 DSDEYRAYLKTK 121 (327)
Q Consensus 110 dp~~y~a~Lk~k 121 (327)
|-.....+|+++
T Consensus 65 ~~~~~~e~L~Sr 76 (362)
T TIGR01010 65 DTYTVQEYMRSR 76 (362)
T ss_pred cHHHHHHHHhhH
Confidence 444445777776
No 303
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=52.86 E-value=1.6e+02 Score=33.59 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=28.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 240 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 240 lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.+.-++++.+--.......+|..+++.+..+-..+..+.+.....+..+..|-..|.-+++.|.
T Consensus 451 ~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 451 QKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555554444455555555554444444444444444444444444444444444333
No 304
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=52.78 E-value=1.5e+02 Score=25.89 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaq 298 (327)
+..|+.++...+...+.-...|..|+..+..+..+++.+..+
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555555555555555544444444333
No 305
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.67 E-value=1.2e+02 Score=34.98 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhhccc
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRII-QLSIFYIMWLRS 326 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~-~~~~~~~~~~~~ 326 (327)
.+...+++++..+..+-+.++.++..++.++..+-.++. +-+. |..|||.
T Consensus 497 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gS-L~~fL~~ 547 (1201)
T PF12128_consen 497 AEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGS-LLEFLRK 547 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc-HHHHHHh
Confidence 333344444444444444455555555555555322332 3333 5566663
No 306
>PHA03161 hypothetical protein; Provisional
Probab=52.52 E-value=1.8e+02 Score=26.34 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020381 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRII 314 (327)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~ 314 (327)
+.+-++.+..|+. .+++..|..|..+.....++++.|..--......=..|.-.+..|+.-|...+.++.
T Consensus 44 ~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ELe~l~ 113 (150)
T PHA03161 44 KKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEIEALN 113 (150)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444433 667777777777777777777766653333444445566677777776666666665
No 307
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=52.49 E-value=1.3e+02 Score=25.85 Aligned_cols=69 Identities=25% Similarity=0.224 Sum_probs=39.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+..|+.-|.+.=. ++..++++..++..+-.+-..|..++..+.+++..+ ..+-....=...|+..+..+
T Consensus 40 ~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~ 108 (150)
T PF07200_consen 40 LAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEA 108 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHH
Confidence 5566666665432 246666777777777777777777777766666666 45544444444455444443
No 308
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.39 E-value=80 Score=34.07 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=6.9
Q ss_pred HHHHHHHhhhhhhh
Q 020381 112 DEYRAYLKTKLDLA 125 (327)
Q Consensus 112 ~~y~a~Lk~kL~~~ 125 (327)
.+|..--..+|+.-
T Consensus 239 ~e~~~~K~~~l~~~ 252 (594)
T PF05667_consen 239 EEYRKRKQQRLQKR 252 (594)
T ss_pred hhhhHHHHHHHHHH
Confidence 45555544555433
No 309
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=52.21 E-value=1.6e+02 Score=26.14 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..+++....++.|...-.....+-..+...+..+..|...|..-.+++..+|+.-
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 75 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYF 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455566666677777777777777788888888888888988889999888766
No 310
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=52.01 E-value=1.1e+02 Score=30.97 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHL 257 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l 257 (327)
.++.|+++++|...-..=+||..++
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888777766765443
No 311
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.72 E-value=55 Score=32.28 Aligned_cols=40 Identities=30% Similarity=0.306 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
-+-++.-=..++..+.+++.++..|+.+......+...+.
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~ 269 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELE 269 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555666666666666655544444444333
No 312
>PF14645 Chibby: Chibby family
Probab=51.50 E-value=56 Score=27.94 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
..|+.+.+.|+-++.-|..-+++.
T Consensus 81 ~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 81 QQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444433
No 313
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.42 E-value=65 Score=31.26 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 290 VNNRILKADIETLRAKVTY 308 (327)
Q Consensus 290 ~EN~~Lkaql~~Lrakv~~ 308 (327)
..+..|.-++++|+.-+-+
T Consensus 89 t~~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 89 TDDAALEDRLEKLRMLAGS 107 (247)
T ss_pred hHHHHHHHHHHHHHHHhcc
Confidence 4555555567766655443
No 314
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=50.86 E-value=86 Score=34.69 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
.||..|...+.++...+..++.+-..||.++..+
T Consensus 55 ~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 55 AENERLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333
No 315
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=50.79 E-value=1.5e+02 Score=25.45 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+.+......+..++.....|..-=....+++..+..+|..|+.++..=+
T Consensus 14 ~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~ 62 (125)
T PF03245_consen 14 AALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGN 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCC
Confidence 3344444444443333333322222334555666777777777765543
No 316
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.78 E-value=1.3e+02 Score=33.25 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
+++.++..|+.+-+....++..++++...+......|..+++..
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333333333333
No 317
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=50.69 E-value=1.7e+02 Score=27.55 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=7.7
Q ss_pred CCCChHHHHHHHhh
Q 020381 107 APVDSDEYRAYLKT 120 (327)
Q Consensus 107 ~~~dp~~y~a~Lk~ 120 (327)
+.+|-.|.+-+|..
T Consensus 24 ~~g~vaEL~qli~~ 37 (192)
T PF11180_consen 24 AQGNVAELQQLIQD 37 (192)
T ss_pred CcccHHHHHHHHHc
Confidence 34555566666554
No 318
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=50.54 E-value=2.2e+02 Score=26.63 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
-...+.++.++..|+......-.+...+...+..|..++..|..++...+.+...+
T Consensus 168 ~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 168 SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666666666666666666666555543
No 319
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=50.33 E-value=1.6e+02 Score=25.61 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaq 298 (327)
+|..+|..|+.|+..+..-..+|..++.-|+-.++..++.
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444444444444444444433333
No 320
>PLN02678 seryl-tRNA synthetase
Probab=50.11 E-value=2.4e+02 Score=29.40 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVN---QKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~---qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+|..+++.|+.+-..+.+++..+. +....+..+=+.|+.++..|..++...
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~ 97 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEA 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544321 122233444456666666666666554
No 321
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=50.05 E-value=1e+02 Score=27.53 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVN--------QKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~--------qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+-++.|+.+++.|+.+-..+..++.+.. ..|.....+-..|..++..|..+|..+
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455666777777665555655553332 236666677777888888888888776
No 322
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=49.99 E-value=2.2e+02 Score=35.08 Aligned_cols=51 Identities=27% Similarity=0.368 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDV-------NQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L-------~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++-.++++|+.+|..|..++.++ ...++.++..++.|..++..|++.+..+
T Consensus 1481 e~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeEl 1538 (1930)
T KOG0161|consen 1481 ELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEEL 1538 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333 3334444555555556666666555544
No 323
>PLN03188 kinesin-12 family protein; Provisional
Probab=49.96 E-value=1.1e+02 Score=36.09 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTD------------------------VNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~------------------------L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
...|+.||..|+.+|.+ .++++..++.||..|++++++|+.|-.+-
T Consensus 1175 r~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e 1244 (1320)
T PLN03188 1175 RRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENE 1244 (1320)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455559988877763 34566777899999999999999998655
No 324
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=49.92 E-value=1.2e+02 Score=27.88 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
+++++.|+.+.......+..+...+..+
T Consensus 45 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 72 (177)
T PF03234_consen 45 KQEIEELKYERKINEKLLKRIQKLLSAL 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666555444444444444433
No 325
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=49.90 E-value=63 Score=25.75 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 278 LTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|..++.++..+.-||-.||+++..+|..|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~a 41 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHA 41 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777777777666655444
No 326
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.84 E-value=1e+02 Score=31.46 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQK----YDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk----~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+|..+++.|+.+-..+.+++..+... ...+..+-+.|+.++..|..+++.+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 95 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555443211 2344445555666666665555444
No 327
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=49.79 E-value=1.1e+02 Score=32.13 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQ--------------LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~--------------L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.=|++|-++|+.+++. ...+.+.+..+|.-|.++|...-.||..|-+.+++-+..|+.
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRq 460 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQ 460 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888998887654 334566788899999999999999999999888887765544
No 328
>PLN02939 transferase, transferring glycosyl groups
Probab=49.68 E-value=1.7e+02 Score=33.58 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 281 VNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 281 L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|..++..+..||..||.+++.|.+++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999888765
No 329
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.68 E-value=1.7e+02 Score=33.28 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 282 NQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 282 ~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+.+...+..|-..|.-++..|..||.+
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~D 462 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQD 462 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334444444444444444444444443
No 330
>PHA03011 hypothetical protein; Provisional
Probab=49.67 E-value=1.4e+02 Score=25.78 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+.+++|..|...|-.|-+-+..+...+.+-.+.-..|=--|++++.+|...+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777776666655555555556677776666554
No 331
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.62 E-value=1.4e+02 Score=27.24 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+++.++..|+.....+...+..|+..+..+...=..|+.+...|.++...
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555554444555555444444433
No 332
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=49.56 E-value=1.3e+02 Score=23.73 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (327)
.++.+..++..|+..-..|..++..+..++..+..
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777765544
No 333
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.46 E-value=59 Score=24.99 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
+++|+.++..|+.|...+..++..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888877776543
No 334
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.39 E-value=3.1e+02 Score=28.44 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..|..-+..+.+++..+..+-+.|..++.+|+.++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666667777778888888888888888888877766
No 335
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.09 E-value=1.7e+02 Score=31.66 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+..++.=|.+++..++.+...+..++..+...+.|+..|+++...|+..|...
T Consensus 275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455567777888888888899999999999999999999999999877543
No 336
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=49.04 E-value=1.2e+02 Score=32.46 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDV---N----QKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L---~----qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+..++.||.+++.|+.+...|..++..- . .++..+..+=..++.+++.+-.++..+
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l 624 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEA 624 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888887777532 1 145555666666777777777766654
No 337
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=48.96 E-value=83 Score=31.77 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.+|++.|+.+++.|+.+...|..+++... .....-..|..+++.+..++..+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888777777665433 23333444666666666666664
No 338
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.61 E-value=2.8e+02 Score=28.42 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~q---k~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|..+++.|+.+-..+.+++..+.. ....+..+-+.|+.++..|..+++..
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443211 12235555566666666666666554
No 339
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=48.58 E-value=2.1e+02 Score=26.05 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 230 SVDDKRARRMLSNRESARRSRRRK-----QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RK-----k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
..+..|.++-++.+.-++++|.-- ..-.++||.-+.-.+.|...+++++..++.++.-
T Consensus 40 EeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkp 102 (159)
T PF04949_consen 40 EEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKP 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhH
Confidence 445566677788888888888522 2233556555555566666666666555544433
No 340
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.51 E-value=2.9e+02 Score=27.45 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
...|+..++.|+.+...|.+.++.+..-+-.+......|+.++..|+.....
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4556677778888888888887777776677777777777766666644433
No 341
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=48.49 E-value=1.7e+02 Score=24.92 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020381 282 NQKYDES 288 (327)
Q Consensus 282 ~qk~~~l 288 (327)
+.++..+
T Consensus 65 r~e~~~~ 71 (132)
T PF07926_consen 65 REELQEL 71 (132)
T ss_pred HHHHHHH
Confidence 3333333
No 342
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=48.37 E-value=2.4e+02 Score=26.57 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH----
Q 020381 230 SVDDKRARRMLSNRESARRSRRRKQAH----LNELETQAGQLRAEHSSLLKGLTDVNQKYDESA----------VN---- 291 (327)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~~----l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~----------~E---- 291 (327)
.+-.+|.||-...+.++=.-+-+=.+. |...-.+|..|+..|+.|...+.+|+.-|..+. .|
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrF 98 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRF 98 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHh
Confidence 445788888888877765443332221 222223445555555555555555543333322 22
Q ss_pred ----HHHHHHHHHHHHHHHHHH
Q 020381 292 ----NRILKADIETLRAKVTYY 309 (327)
Q Consensus 292 ----N~~Lkaql~~Lrakv~~a 309 (327)
-.++++++.....||+.+
T Consensus 99 Gryta~vmr~eV~~Y~~KL~eL 120 (195)
T PF10226_consen 99 GRYTASVMRQEVAQYQQKLKEL 120 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 234566666666666555
No 343
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.31 E-value=1.2e+02 Score=25.74 Aligned_cols=50 Identities=24% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (327)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~ 293 (327)
|-.||.+++-.++-...|-..|. .+.|+..|..++..+..+......+..
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~~ 104 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERDQ 104 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44678777754443333333332 233445566666655555555444443
No 344
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=47.91 E-value=1.4e+02 Score=32.07 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.++++-+..+.++...+......+.++|.....++....-||..|..++..|..|+++.
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~ 252 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYL 252 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35555566666666666666667777777777777777888888888888888888876
No 345
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=47.82 E-value=42 Score=29.03 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L 274 (327)
|-.|..|+.++|+.++ ++.+++|+.+++.|+.+.+.+
T Consensus 95 E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 95 EYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444332 245666666666666555544
No 346
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=47.65 E-value=68 Score=28.20 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
-|......+..|+.||.-|+..|..+++-|.+=...=..|+.++.
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666778889999999999998888888765444444444443
No 347
>PF14282 FlxA: FlxA-like protein
Probab=47.48 E-value=1.4e+02 Score=24.75 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSS 273 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~ 273 (327)
..+..|..++..|+.+...
T Consensus 51 ~q~q~Lq~QI~~LqaQI~q 69 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQ 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444433333333
No 348
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.29 E-value=1.4e+02 Score=33.78 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 250 R~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
..+-|..+.+|..+++.|+..+.+|..+.+.|..++.....+...|+.++.-|+..+.
T Consensus 659 ~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 659 QQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555556666666666666666666666666666666666666666666666555
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=47.23 E-value=89 Score=33.22 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVN------QKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~------qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
++.||.+++.|+.+...|..++..-. .++..+..+=..++.+++.|-.++..
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 627 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEE 627 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999988888888775421 14556666666666677666666654
No 350
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=46.96 E-value=91 Score=26.72 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (327)
|.-|++|-++|...+.||-.|+.++.-|-|-+..|..
T Consensus 69 QnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 69 QNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 3456666666666666666666666555544444443
No 351
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=46.87 E-value=55 Score=26.47 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020381 287 ESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 287 ~l~~EN~~Lkaql~~Lrakv 306 (327)
....|...|+.-+..||.+|
T Consensus 16 ~K~eEI~rLn~lv~sLR~KL 35 (76)
T PF11544_consen 16 DKQEEIDRLNILVGSLRGKL 35 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 352
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=46.81 E-value=3.8e+02 Score=28.41 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
.++.++..++.++..+..++..+..++
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~l 90 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 353
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.50 E-value=89 Score=30.59 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 020381 295 LKADIETLRAKVTYYFIRIIQ 315 (327)
Q Consensus 295 Lkaql~~Lrakv~~av~r~~~ 315 (327)
|+.++..|++++....+++.+
T Consensus 247 l~~~i~~l~~~i~~e~~~i~~ 267 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLSG 267 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555544444433
No 354
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=46.20 E-value=51 Score=27.57 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 283 QKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 283 qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
+++..+..||..||.-+.-.+++
T Consensus 85 ~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 85 RLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhchh
Confidence 33344556666666666555544
No 355
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=46.18 E-value=2.6e+02 Score=28.64 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
|..+..+|..+...|+.+...+..++
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 356
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=46.15 E-value=1.9e+02 Score=25.13 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
|..-..=+-|-++|+.+|..|+.+...++.=|.-|...|.-|...|+.
T Consensus 17 ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 17 ERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555555555554444444444444444444444433
No 357
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=46.10 E-value=83 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
...|..||+.|..+.. ....+.+|...|+..++=..++
T Consensus 32 ~~kL~~en~qlk~Ek~-----~~~~qvkn~~vrqknee~~~~~ 69 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKA-----VAETQVKNAKVRQKNEENTRRL 69 (87)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHhhccC
Confidence 4444444444443332 2345566777777666554444
No 358
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=46.02 E-value=14 Score=32.57 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (327)
|+..-..+..+++..+.+|-.+..++.+|++.+..+..
T Consensus 81 k~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~ 118 (133)
T PF06424_consen 81 KKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSE 118 (133)
T ss_pred cchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCH
Confidence 33334556677778888888888899888888776643
No 359
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=45.85 E-value=71 Score=32.24 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|+.|+..|.+|.++++.-+++..-|.--||.=-.++++|..-|..+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~EL 47 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIREL 47 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888777777777777776666777776655554
No 360
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=45.66 E-value=82 Score=31.53 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKG 277 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~ 277 (327)
+.++++|+..+..|..+
T Consensus 14 ~~~~~~~~~~~~~~~~~ 30 (389)
T PRK03992 14 EEQIRQLELKLRDLEAE 30 (389)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 361
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.53 E-value=4e+02 Score=28.28 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l 278 (327)
.+..+..+...++.++..|..++
T Consensus 68 ~l~~~~~~~~~~~~~~~~l~~~l 90 (475)
T PRK10361 68 EVRSLQSINTSLEADLREVTTRM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 362
>PRK02224 chromosome segregation protein; Provisional
Probab=45.20 E-value=3.4e+02 Score=29.73 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 020381 257 LNELETQAGQ 266 (327)
Q Consensus 257 l~eLE~qV~~ 266 (327)
+.+|+.+++.
T Consensus 511 l~~l~~~~~~ 520 (880)
T PRK02224 511 IERLEERRED 520 (880)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 363
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=44.97 E-value=1.3e+02 Score=29.85 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.|+=.+|.+++....|...|..++..|+. .|..||+++.+.+.++..
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~-------~~~~~r~~~~~~~~~~eg 110 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQH-------QNSEQRQQIREMREIIEG 110 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 46666777777777777777666665554 455555555555555543
No 364
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=44.96 E-value=1.4e+02 Score=36.44 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|..+.+.-..+.+|..+|+.|+.+...|...+..+..++....+++..|+.++.....+....
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L 1297 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDL 1297 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777888888887777777777777777777777777777776666666665554
No 365
>PRK14127 cell division protein GpsB; Provisional
Probab=44.73 E-value=55 Score=27.92 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 286 DESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 286 ~~l~~EN~~Lkaql~~Lrakv 306 (327)
..|..+|..|+.++..++.++
T Consensus 47 ~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 47 EELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444433
No 366
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=44.70 E-value=2.4e+02 Score=25.45 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 020381 285 YDESAVNNRILKADIE 300 (327)
Q Consensus 285 ~~~l~~EN~~Lkaql~ 300 (327)
+..+..+|+.|...+.
T Consensus 98 v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 98 VEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344445555543333
No 367
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=44.69 E-value=2.6e+02 Score=25.91 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 276 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~ 276 (327)
.+|..++.++-+.|.+.+..=...+.+.+.++...+.+-+.+..
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777777777777777777777766666543
No 368
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=44.51 E-value=72 Score=31.92 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..|+.++..++.++..|..++..+. .+...++.++..|+..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 47 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLE-------AENEKLERELERLKSELEK 47 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444 4444455555555555543
No 369
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.42 E-value=1.1e+02 Score=26.48 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.++..++..+..|..++=.+-.+..-+...+..|..+-+.|+.+|...
T Consensus 72 ~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l 119 (141)
T PF13874_consen 72 ARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEAL 119 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444555555555555443
No 370
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=44.36 E-value=2e+02 Score=24.47 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..|..+.++...|.=.|..|-.+++.|..-+
T Consensus 40 ~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 40 QALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433
No 371
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.35 E-value=3.4e+02 Score=31.74 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=7.6
Q ss_pred hHHHHHHhhh
Q 020381 37 WELEKFLQEV 46 (327)
Q Consensus 37 W~FqkfLeE~ 46 (327)
=+|++||+++
T Consensus 663 ~~~~k~ie~a 672 (1311)
T TIGR00606 663 AVYSQFITQL 672 (1311)
T ss_pred HHHHHHHHHH
Confidence 4678888887
No 372
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=44.09 E-value=2.1e+02 Score=24.53 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 020381 293 RILKADIETLR 303 (327)
Q Consensus 293 ~~Lkaql~~Lr 303 (327)
+.|+.+...+.
T Consensus 72 ~~L~~~~~~k~ 82 (150)
T PF07200_consen 72 KELESEYQEKE 82 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 373
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=43.87 E-value=76 Score=25.08 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQK 284 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (327)
..|+.+++.++.+...|..++..+..+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~ 91 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKK 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333
No 374
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=43.83 E-value=1.6e+02 Score=31.44 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 020381 294 ILKADIETLRAKVTYY 309 (327)
Q Consensus 294 ~Lkaql~~Lrakv~~a 309 (327)
.|+.++..++..+...
T Consensus 266 ~Le~ei~~le~e~~e~ 281 (650)
T TIGR03185 266 QLERQLKEIEAARKAN 281 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555444
No 375
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=43.72 E-value=66 Score=32.65 Aligned_cols=16 Identities=19% Similarity=-0.035 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 020381 267 LRAEHSSLLKGLTDVN 282 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~ 282 (327)
|+.++..|..++..+.
T Consensus 27 ~~~~~~~~~~~~~~~~ 42 (398)
T PTZ00454 27 LEKELEFLDIQEEYIK 42 (398)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 376
>COG5570 Uncharacterized small protein [Function unknown]
Probab=43.42 E-value=41 Score=25.62 Aligned_cols=51 Identities=29% Similarity=0.382 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
.||.+|+.+-..|+.|.++-...-.-=-..+..|...--+||.+++.|++.
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777777777777666543221111112223333334567777777654
No 377
>PRK10722 hypothetical protein; Provisional
Probab=43.23 E-value=1.7e+02 Score=28.47 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRES------ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (327)
Q Consensus 232 e~KR~RR~lsNRES------ArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (327)
..+-.-++...+.- .-|.|.+|.+ .+-+.+++.|+.++..|..++..+++|+..|..
T Consensus 142 ~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQ--q~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTd 204 (247)
T PRK10722 142 QVRPLYQLWRDGQALQLALAEERQRYQKLQ--QSSDSELDALRQQQQRLQYQLELTTRKLENLTD 204 (247)
T ss_pred hhhHHHHHHHHhhHHHHhHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555533 4444444443 333466666666666666666666666555543
No 378
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=42.99 E-value=1.7e+02 Score=23.17 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 289 AVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 289 ~~EN~~Lkaql~~Lrakv~~a 309 (327)
...++..+.+.+.|..-++.+
T Consensus 63 ~~~~~~~k~~~~KL~~df~~~ 83 (102)
T PF14523_consen 63 RSNDRQQKLQREKLSRDFKEA 83 (102)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 334444555555555444444
No 379
>PF15556 Zwint: ZW10 interactor
Probab=42.83 E-value=3.2e+02 Score=26.36 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
-.-|..+..|..-.++++.+.....+++..+..|-..|+.+...-+.|+...
T Consensus 130 lqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~ 181 (252)
T PF15556_consen 130 LQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRH 181 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555556666666777777777777778888888888887665
No 380
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.79 E-value=1.5e+02 Score=28.53 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 020381 260 LETQAGQLRAE 270 (327)
Q Consensus 260 LE~qV~~L~~E 270 (327)
|..++..+.++
T Consensus 86 lkd~~lR~~Ad 96 (238)
T PRK14143 86 LNSQYMRIAAD 96 (238)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 381
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=42.63 E-value=3.1e+02 Score=26.12 Aligned_cols=25 Identities=24% Similarity=0.245 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKG 277 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~ 277 (327)
....+..|+.+...++.+-..|..+
T Consensus 31 ~e~~a~~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 31 SEETAEELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333333
No 382
>PRK10132 hypothetical protein; Provisional
Probab=42.54 E-value=1.4e+02 Score=25.37 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
..+|+.+++.|..+...|...+++|-...
T Consensus 7 ~~~~~~q~e~L~~Dl~~L~~~le~ll~~~ 35 (108)
T PRK10132 7 RNDVDDGVQDIQNDVNQLADSLESVLKSW 35 (108)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777776554433
No 383
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=42.49 E-value=1.5e+02 Score=24.94 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=22.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 240 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (327)
Q Consensus 240 lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (327)
..-||.|+.-..=++...+.|+.--++|..|...-.++|.+|.++
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566665554444444444444444444444455555554443
No 384
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=42.48 E-value=3.5e+02 Score=28.47 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lk 296 (327)
++.+..|..+...|+.+...|..+...|+.+.+.+.++-..|.
T Consensus 136 qQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 136 QQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555554444444
No 385
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=42.47 E-value=1.3e+02 Score=28.05 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
+.-|+|-.|.+ ..-..+++.|+.++..|..+|....+|+..|.
T Consensus 115 ~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 115 SEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344444443 33444555555555555555555555554443
No 386
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=42.33 E-value=1.1e+02 Score=25.29 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+.-++..++++...|..||..|+.+...-.+.|+.+
T Consensus 21 ~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 21 LWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666777777777777777777665
No 387
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.30 E-value=1.5e+02 Score=31.18 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLL--------KGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~--------~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
++-+++|..++..|+...-.+. .++.+|.+....+..+|+.|+.+-+.|...+
T Consensus 373 qELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngti 433 (502)
T KOG0982|consen 373 QELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTI 433 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhh
Confidence 4567777777777776655544 5566777777777777888777777777554
No 388
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=42.17 E-value=1.5e+02 Score=29.59 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL 267 (327)
Q Consensus 230 ~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L 267 (327)
+...+|.-+.++||+-.++-+.++.++...+..++.++
T Consensus 272 ~~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i 309 (387)
T PF07767_consen 272 PKKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI 309 (387)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666788888877777777776655555554443
No 389
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=41.94 E-value=1.6e+02 Score=30.14 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQ-------------KYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~q-------------k~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++.+..|+.++..++.+...|...+..+.+ .+..+...-..|+.++.+|..++...
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 390
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=41.82 E-value=1.7e+02 Score=29.27 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (327)
Q Consensus 250 R~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (327)
|++..+.+++|+.+...|..+|...+..|..|..++..+..
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~ 143 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKK 143 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66777788888888888888888888888877777766543
No 391
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=41.81 E-value=1e+02 Score=26.85 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 283 QKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 283 qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
-++..+...-+.|+.++..|+..+..+
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555555544
No 392
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=41.74 E-value=2.2e+02 Score=25.81 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
|.+.|+.++..++.++..|...+.....++...
T Consensus 80 ~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~ 112 (158)
T PF09486_consen 80 YRDVLEERVRAAEAELAALRQALRAAEDEIAAT 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333333
No 393
>PRK15396 murein lipoprotein; Provisional
Probab=41.61 E-value=1.9e+02 Score=23.37 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
.++.|..+|+.|..+-..|...+..++.......
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~ 59 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAK 59 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555555555444433
No 394
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=41.60 E-value=3.6e+02 Score=31.34 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|..++..++.+++....+=..++.++..+++.|++.
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555666666666665444
No 395
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=41.43 E-value=3.1e+02 Score=33.91 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.+.++..+.....+..+...|..++.++..+...+..+|..|.+++..|...+..+
T Consensus 1455 ~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~ 1510 (1930)
T KOG0161|consen 1455 QAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEG 1510 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555566666666666666666666666776666666666555554
No 396
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=41.17 E-value=8.9 Score=41.38 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE---SAVNNRILKADIETLRAKV 306 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~---l~~EN~~Lkaql~~Lrakv 306 (327)
++|.+.+.+|..+|..|+..|..|..+...|..++.. +..+...++.++..|..++
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888888777766655544 3334444444444444443
No 397
>PRK11281 hypothetical protein; Provisional
Probab=41.13 E-value=4.8e+02 Score=30.51 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcchhhhhhcc
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY--FIRIIQLSIFYIMWLR 325 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a--v~r~~~~~~~~~~~~~ 325 (327)
+..+-..|..|..++..+.++.+.+..+|...++++..++.-.... --.+.+.+.+|.-.||
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~ 343 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILY 343 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3445567888999999999999999999999998888888665543 2234555555554443
No 398
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=40.90 E-value=2.1e+02 Score=26.77 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..+..||.+|..|+..-..+...+..-.++.-.+..+=..|++++.+|..||
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHH
Confidence 3456677777776654444444444322333334444444455555555444
No 399
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=40.87 E-value=1.6e+02 Score=31.44 Aligned_cols=40 Identities=8% Similarity=0.165 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLRAE 270 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArR---SR~RKk~~l~eLE~qV~~L~~E 270 (327)
+..++.++.++-++.... ...-+++.+++++++|+.|+..
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 344444444444333333 3333356788888888888765
No 400
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=40.85 E-value=80 Score=31.87 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lk 296 (327)
-.|.++-+.|+.||..|..++.. +..+..||..|+
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr 94 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKS----YEEANQTPPLFS 94 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44444444444444444444332 334456666544
No 401
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=40.82 E-value=45 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
-.....++..|+.||..|+.+|..++
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667889999999999999987654
No 402
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=40.81 E-value=1.8e+02 Score=22.90 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLT----DVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~----~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++..++..|-.||..|+..+. .++++|..+..=-..-+.+.+-+..++..+
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ea 57 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEA 57 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777765443 333444444433333344444444444444
No 403
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.78 E-value=2e+02 Score=26.27 Aligned_cols=14 Identities=7% Similarity=-0.185 Sum_probs=5.7
Q ss_pred HHHHhhcchhhhhh
Q 020381 310 FIRIIQLSIFYIMW 323 (327)
Q Consensus 310 v~r~~~~~~~~~~~ 323 (327)
+.|.|..=-++.-|
T Consensus 151 anrwTDNI~~l~~~ 164 (188)
T PF03962_consen 151 ANRWTDNIFSLKSY 164 (188)
T ss_pred HHHHHhhHHHHHHH
Confidence 44445433333333
No 404
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=40.56 E-value=2.2e+02 Score=29.26 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
..++.++..++.+...|..++..|++++..+.
T Consensus 95 ~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 95 KQQAKALDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555554
No 405
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=40.46 E-value=2.8e+02 Score=26.41 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 280 DVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 280 ~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.|+++....+-|-..|++++.+|+
T Consensus 116 ~L~~~k~kqe~e~s~L~k~vtAL~ 139 (229)
T KOG1319|consen 116 FLHKEKKKQEEEVSTLRKDVTALK 139 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666667777777776
No 406
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.26 E-value=1.9e+02 Score=23.18 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.+||.++..|+...+.-..-|++|+..+.+....=..++.++..|-.|+
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888877766666666666555554333333333333333333
No 407
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.15 E-value=2.1e+02 Score=25.62 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 020381 299 IETLRAK 305 (327)
Q Consensus 299 l~~Lrak 305 (327)
+..||+.
T Consensus 140 i~~lr~~ 146 (177)
T PF07798_consen 140 IANLRTE 146 (177)
T ss_pred HHHHHHH
Confidence 3333333
No 408
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=39.90 E-value=88 Score=30.65 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
++.|+.++..|+.||..|+.++..++.++
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~ 62 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQL 62 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555444333
No 409
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.86 E-value=1.4e+02 Score=28.64 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 289 AVNNRILKADIETLRAKV 306 (327)
Q Consensus 289 ~~EN~~Lkaql~~Lrakv 306 (327)
..+|..|-.++..|...+
T Consensus 68 A~~N~~lf~r~~~lq~~L 85 (218)
T COG3159 68 ARANERLFYRLHALQLDL 85 (218)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 344444444444444433
No 410
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=39.81 E-value=4e+02 Score=31.12 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lk 296 (327)
.+..+-.+.||+--..--+++-..++++-.+.-.|+.++..|..++..|..++..+...+..|.
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888877777777776677777777777777777777777666666666554444443
No 411
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.66 E-value=4.1e+02 Score=31.46 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=10.7
Q ss_pred CCcchhHHHHHHhhhh
Q 020381 32 RSQSEWELEKFLQEVT 47 (327)
Q Consensus 32 rs~SEW~FqkfLeE~~ 47 (327)
=|.=|-.||++.....
T Consensus 159 SCsV~vhFq~iiD~~~ 174 (1293)
T KOG0996|consen 159 SCSVEVHFQKIIDKPG 174 (1293)
T ss_pred ceeEEEeeeeeeccCC
Confidence 3666778888875543
No 412
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=39.59 E-value=5.2e+02 Score=27.86 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++++.++..|+.|..-...+..++...+.+...+..+=..|+.+...+..|-+.+
T Consensus 45 ~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll 99 (618)
T PF06419_consen 45 RQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLL 99 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777777777777777777777777766666555443
No 413
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=39.54 E-value=3.2e+02 Score=25.47 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.-...+..||..|+.+|..+.+++..|...+..|..+-..|+
T Consensus 156 e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 156 EFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777777777777766666666666555
No 414
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=39.51 E-value=2.9e+02 Score=24.88 Aligned_cols=76 Identities=12% Similarity=0.192 Sum_probs=39.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYF 310 (327)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av 310 (327)
-.|-.+.+|..+..--..-+.++.....++..|+..+..=..++..+..++..+...-..++.+.+.+...++.-+
T Consensus 122 svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~ 197 (236)
T PF09325_consen 122 SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKEL 197 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555444444444444444444444444442222345556666666666555666666666666655543
No 415
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.38 E-value=2.6e+02 Score=24.41 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
++|+.|..++++...-......++..++.....+..+=..+..-+..|..|+.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777666666666667766666666665555555666666655553
No 416
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=39.36 E-value=25 Score=37.11 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHS 272 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~ 272 (327)
+|++|++|+++|+.+..
T Consensus 32 kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34444444444444433
No 417
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=39.22 E-value=2.5e+02 Score=24.19 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLR-AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 256 ~l~eLE~qV~~L~-~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|.+||.++..++ .+...-..+|+..++-|.....-|..|-.++..-..+|..+
T Consensus 8 rIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaev 62 (111)
T PF12001_consen 8 RIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEV 62 (111)
T ss_pred HHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777766 44444466777777777766666666665655555555554
No 418
>PHA02675 ORF104 fusion protein; Provisional
Probab=39.15 E-value=2.2e+02 Score=23.67 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 020381 295 LKADIETLRAK 305 (327)
Q Consensus 295 Lkaql~~Lrak 305 (327)
||.-+-.|..|
T Consensus 70 LRk~Ml~L~KK 80 (90)
T PHA02675 70 LREALLKLNTK 80 (90)
T ss_pred HHHHHHHHHhh
Confidence 34444444433
No 419
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.13 E-value=2.9e+02 Score=29.06 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR------ILKADIETLR 303 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~------~Lkaql~~Lr 303 (327)
..+.+++.++..++.+...+..++..++.++.++..-|- .|..++..|.
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~ 222 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLS 222 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHh
Confidence 445555555666655556666666666666666554442 2555555444
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.91 E-value=5.5e+02 Score=28.48 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
+.|.+|+.+++.|+..-..|..+++++..+.
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Q 609 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQ 609 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444333
No 421
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.78 E-value=2.8e+02 Score=26.16 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRII 314 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~ 314 (327)
..+..|+.++..|..+-..|..+......+...+...=..+..+...|...|......+.
T Consensus 45 ~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~ 104 (264)
T PF06008_consen 45 QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQ 104 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888888877777778888888888777644443
No 422
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.69 E-value=1.3e+02 Score=23.95 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 286 DESAVNNRILKADIETLR 303 (327)
Q Consensus 286 ~~l~~EN~~Lkaql~~Lr 303 (327)
..++.+++..++-+..++
T Consensus 62 ~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 62 EELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 423
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=38.16 E-value=53 Score=30.71 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.|......|+.+|..+..+|+.|+.++.+|++.+..
T Consensus 109 qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~ 144 (198)
T KOG0483|consen 109 QLEKDYESLKRQLESLRSENDRLQSEVQELVAELSS 144 (198)
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 344444555555566666666666666666655544
No 424
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.95 E-value=4.5e+02 Score=26.73 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=6.1
Q ss_pred CCCceeeeec
Q 020381 81 GDDDVVEIKK 90 (327)
Q Consensus 81 ~~~~vvev~~ 90 (327)
+..++++|.-
T Consensus 119 ~~s~vi~Is~ 128 (498)
T TIGR03007 119 GRDNLFTISY 128 (498)
T ss_pred CCCCeEEEEe
Confidence 3346777765
No 425
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=37.83 E-value=3.2e+02 Score=25.03 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLL-------KGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 245 SArRSR~RKk~~l~eLE~qV~~L~~EN~~L~-------~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.+=.-|.++..++..++..+..++..-..|. .++..+..++..++..=...+.+.+.+...++.-
T Consensus 105 ~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~E 176 (216)
T cd07627 105 AAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSE 176 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555554444442 3444455555554444444455555555444443
No 426
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=37.83 E-value=1.6e+02 Score=29.52 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|..++..|.++...+..+|...+..+..|..+|+..
T Consensus 105 ~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 105 RLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444455555555555555555566655555555443
No 427
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=37.38 E-value=91 Score=26.71 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
|..+..+|+.||.-|+-+++.|-
T Consensus 77 lkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556655555554443
No 428
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.34 E-value=4.6e+02 Score=26.61 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
-.+++.|..+...+..++..++.+|..+......+..++..+...|..
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345666666677777777777777777777777777777777766544
No 429
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=37.32 E-value=4.6e+02 Score=26.62 Aligned_cols=57 Identities=26% Similarity=0.400 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 229 DSVDDKRARRMLSNRESARRSRRR------KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 229 d~~e~KR~RR~lsNRESArRSR~R------Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
-++|.||+.-+|+ |-||-+-.| =+.+-+.+|.+|.+|+.+|.-+.++-+.|.++|.+
T Consensus 3 ~~~dk~ri~~li~--~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyre 65 (328)
T PF15369_consen 3 CPEDKRRIANLIK--ELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRE 65 (328)
T ss_pred ChhHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456666665554 456555443 34556778889999999999988888888887765
No 430
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=37.31 E-value=98 Score=28.47 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
.+++..|+.+++.|+.++..|..++..+...|..|
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~L 144 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRAL 144 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788888888777777777776666655
No 431
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=37.25 E-value=16 Score=19.84 Aligned_cols=7 Identities=29% Similarity=0.743 Sum_probs=5.5
Q ss_pred CCCCCCC
Q 020381 12 DSFLSSP 18 (327)
Q Consensus 12 ~~fW~~p 18 (327)
.|||.+|
T Consensus 2 kpfw~pp 8 (12)
T PF08248_consen 2 KPFWPPP 8 (12)
T ss_pred CccCCCC
Confidence 4899876
No 432
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=37.25 E-value=3.3e+02 Score=25.01 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESA--VNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~--~EN~~Lkaql~~Lrakv~~a 309 (327)
+...++.|+.++..+..++..+.+.+..-. +.-..|...+..+..+++.+
T Consensus 46 itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El 97 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNEL 97 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677777777777777776666643322 33445666777777777766
No 433
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=37.01 E-value=1.2e+02 Score=25.36 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 242 NRESARRSRRRKQAHLNELETQ--------AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 242 NRESArRSR~RKk~~l~eLE~q--------V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
-|+.|...+.+=...|++|... |..-+.+...+..++..|..++.........|+.++..|...+.
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~ 82 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVME 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666543 44445555666677777777777777777777777777765543
No 434
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=36.87 E-value=3.6e+02 Score=30.46 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
+.+.|..|-..+++++..++..-..+..++..|++++..|++
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 355677777777888888888888888888888888888884
No 435
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.71 E-value=5.6e+02 Score=27.46 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=4.6
Q ss_pred HHHHHhhh
Q 020381 39 LEKFLQEV 46 (327)
Q Consensus 39 FqkfLeE~ 46 (327)
|++||...
T Consensus 67 y~~~l~~~ 74 (650)
T TIGR03185 67 YEQYLRGL 74 (650)
T ss_pred HHHHHHHH
Confidence 55666554
No 436
>PRK11239 hypothetical protein; Provisional
Probab=36.67 E-value=60 Score=30.90 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
+..|+.+|..|+.|.+.|+.++..+..++
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688888888888888888887766544
No 437
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=36.49 E-value=2e+02 Score=26.59 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
.-=++|++++.+.+.+...++.+..+|..++...
T Consensus 139 ~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 139 EGLKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666655555555555555443
No 438
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.48 E-value=4e+02 Score=31.14 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++-.++.++..++.++..+...+-.|-..|+..++.+..-|..+
T Consensus 450 ~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 450 EFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555666666665555444
No 439
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=36.46 E-value=2.2e+02 Score=24.44 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 020381 291 NNRILKADIETLRAKVTYYFIRIIQ 315 (327)
Q Consensus 291 EN~~Lkaql~~Lrakv~~av~r~~~ 315 (327)
+-..+++++..+.++++..|..+..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~i~~ 68 (120)
T PF09969_consen 44 EVNGLEAELEELEARLRELIDEIEE 68 (120)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777776655533
No 440
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=36.43 E-value=4.5e+02 Score=26.26 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
.+|..++..+..+-..|..++.++..+...+..+=..|..++.+|+.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444444444444444444444444444444444443
No 441
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=36.29 E-value=41 Score=27.15 Aligned_cols=69 Identities=13% Similarity=0.054 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQLSIFYIM 322 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~~~~~~ 322 (327)
+++|+.|..++++...-..+.+..+..|..++..+...-..--.+-..|..+|..+|.|+=--+|-+-+
T Consensus 3 ~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~ 71 (85)
T PF14357_consen 3 QELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEASHPKLAG 71 (85)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhCCcHHH
Confidence 456777777777655555566666666666665543331111123344455555555554444443333
No 442
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=36.22 E-value=4.4e+02 Score=29.50 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=35.6
Q ss_pred HHHHHHHhhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 020381 235 RARRMLSNRESAR-------------RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV-------NQKYDESAVNNRI 294 (327)
Q Consensus 235 R~RR~lsNRESAr-------------RSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L-------~qk~~~l~~EN~~ 294 (327)
++-|-.+||..|. ++|.+-...+..|.....+|+.+...-...+..+ .+.+.....+-..
T Consensus 481 qqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~ 560 (739)
T PF07111_consen 481 QQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAE 560 (739)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3345555666555 5565555666666666666665554444444444 4444444444444
Q ss_pred HHHHHHHHH
Q 020381 295 LKADIETLR 303 (327)
Q Consensus 295 Lkaql~~Lr 303 (327)
|+.++..-+
T Consensus 561 lR~EL~~QQ 569 (739)
T PF07111_consen 561 LRRELTQQQ 569 (739)
T ss_pred HHHHHHHHH
Confidence 554444433
No 443
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.05 E-value=2.5e+02 Score=23.13 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 267 LRAEHSSLLKGLTDVNQKYDESAVNNR 293 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~ 293 (327)
|+.|-..|..++....+++..|..||+
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 334444444444444444444444443
No 444
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=35.91 E-value=89 Score=31.56 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
.+|+-+||.+.-+|-.+|.+|++.+.+.
T Consensus 104 a~yI~~Le~~Kt~ll~qn~elKr~~~E~ 131 (373)
T KOG0561|consen 104 ADYIHQLEGHKTELLPQNGELKRLKLEE 131 (373)
T ss_pred HHHHHHHHhcccccccccchHHHHHhhh
Confidence 4567777777777777777776665544
No 445
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=35.85 E-value=3e+02 Score=24.02 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 020381 286 DESAVNNRIL 295 (327)
Q Consensus 286 ~~l~~EN~~L 295 (327)
..+...+..|
T Consensus 65 ~~l~~~~~kl 74 (136)
T PF04871_consen 65 KELEAEKEKL 74 (136)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 446
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=35.82 E-value=4e+02 Score=27.11 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=14.7
Q ss_pred CCCChHHHHH---HHhhhhhhhHHHHHHh
Q 020381 107 APVDSDEYRA---YLKTKLDLACAAVALR 132 (327)
Q Consensus 107 ~~~dp~~y~a---~Lk~kL~~~~AAva~~ 132 (327)
...|+..|++ .|+.+|...-+-++.-
T Consensus 88 ~~ld~~~~~~~~~~~~~~~~~~~~~~~rL 116 (457)
T TIGR01000 88 VVYDNGNEENQKQLLEQQLDNLKDQKKSL 116 (457)
T ss_pred EEECchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888874 4555555555544443
No 447
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=35.77 E-value=2.3e+02 Score=30.80 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE----------------------------SAVNNRILKADIETLRAK 305 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~----------------------------l~~EN~~Lkaql~~Lrak 305 (327)
.+.+..|..++..|+.++..|..++..|..++.. ...+-..|+++.+.|+++
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 020381 306 VTYY 309 (327)
Q Consensus 306 v~~a 309 (327)
|...
T Consensus 582 l~~l 585 (722)
T PF05557_consen 582 LRSL 585 (722)
T ss_dssp HHHH
T ss_pred HHhc
No 448
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=35.76 E-value=57 Score=28.38 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
++|..++..|..||+.||.++.
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566677777766654
No 449
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=35.74 E-value=2.1e+02 Score=30.56 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLT 279 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~ 279 (327)
||..+++|..||-.|..-...|+.+..
T Consensus 567 ~k~s~delr~qi~el~~ive~lk~~~~ 593 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALKKDHG 593 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999988888877777765544
No 450
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.70 E-value=2.6e+02 Score=23.21 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E 291 (327)
|+-|-...+.+|..|+.+|..|..++..|+.++.....|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666665555555444433
No 451
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=35.69 E-value=1.3e+02 Score=26.73 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=31.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLR-AEHSSLLKGLTDV--------NQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~-~EN~~L~~~l~~L--------~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+.|+.+++.|+ .+...+..++..+ +..|.....+-..|..++..|..+|..+
T Consensus 11 ~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A 71 (156)
T TIGR01461 11 EKLKQELNYLWREERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENL 71 (156)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555543 2333444444333 3456666667778888899998888876
No 452
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=35.56 E-value=3.7e+02 Score=27.18 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 020381 296 KADIETLRAKVTYY 309 (327)
Q Consensus 296 kaql~~Lrakv~~a 309 (327)
|+.|..|+.+|..+
T Consensus 193 K~KIR~lq~~L~~~ 206 (342)
T PF06632_consen 193 KAKIRELQRLLASA 206 (342)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555554443
No 453
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=35.54 E-value=1.9e+02 Score=25.80 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLR 268 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~ 268 (327)
++|++||.+|..|...|+
T Consensus 18 ~~K~~~LqEL~~Q~va~k 35 (142)
T PF08781_consen 18 KKKKEQLQELILQQVAFK 35 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678888998887766554
No 454
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=35.48 E-value=2.5e+02 Score=28.83 Aligned_cols=67 Identities=22% Similarity=0.230 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRK---------QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RK---------k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
.++|-++-|.+| ||.=-.|- |..|++++.++..-..||..+.+++..++.-+..|...-..||+.|.
T Consensus 124 veekykkaMvsn---aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 124 VEEKYKKAMVSN---AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred HHHHHHHHHHHH---HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777 22211111 23455555555555566666666666555555555555555554443
No 455
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=35.42 E-value=6.1e+02 Score=30.05 Aligned_cols=87 Identities=9% Similarity=0.032 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN----NRILKADIETLRAKV 306 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E----N~~Lkaql~~Lrakv 306 (327)
......+........|++....-++++++++..+...+.+...+..++..+..++..+..- -..|.+++..++.++
T Consensus 858 ~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL 937 (1353)
T TIGR02680 858 DHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAAL 937 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcc
Q 020381 307 TYYFIRIIQLS 317 (327)
Q Consensus 307 ~~av~r~~~~~ 317 (327)
..+-+.+..+.
T Consensus 938 ~~l~~el~~~~ 948 (1353)
T TIGR02680 938 ASGGRELPRLA 948 (1353)
T ss_pred HHHHHHHHHHH
No 456
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=35.41 E-value=3e+02 Score=23.99 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
.+--++-|.|.||--+.|..+ +.++.++..+..-...+..++..+.
T Consensus 34 ae~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~ 79 (126)
T PF09403_consen 34 AEYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLK 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344567788888877766655 5777777777766666655555443
No 457
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.36 E-value=4.7e+02 Score=30.62 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 020381 247 RRSRRRKQAHLNEL 260 (327)
Q Consensus 247 rRSR~RKk~~l~eL 260 (327)
+.-+.+++..+..|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 458
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.32 E-value=4.2e+02 Score=25.57 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 249 SR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.|..||..+++|...+..-+.+...|..+++.++.++ ++-|..+++++....
T Consensus 154 ~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe 205 (240)
T cd07667 154 KRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERWQ 205 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3455555555555554333344445666666665554 666777777776554
No 459
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=35.23 E-value=1.1e+02 Score=31.71 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
.+++.|++.+-+.|+..|+.|..++++|+.++..
T Consensus 289 ~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 289 LQRARELENRQKKLESTNQELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777777777766655443
No 460
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=35.16 E-value=1.1e+02 Score=28.76 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l 278 (327)
+|..++..++.|...|+.=|
T Consensus 48 elr~EL~kvEeEI~TLrqVL 67 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVL 67 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 461
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=35.08 E-value=2e+02 Score=28.07 Aligned_cols=50 Identities=10% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN---RILKADIETLRAKVTY 308 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN---~~Lkaql~~Lrakv~~ 308 (327)
.|+.++.+|..+..+. .+++..|.+++..+...| +.|..++..|...|+.
T Consensus 14 ~l~~~~~~l~~~~~~~---~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~ 66 (304)
T PF02646_consen 14 QLEKFEKRLEESFEQR---SEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKN 66 (304)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 3445555555444332 234455566666677777 7788888888776663
No 462
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.07 E-value=3.5e+02 Score=30.11 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=6.2
Q ss_pred CCCchHHHHHHHHH
Q 020381 227 GLDSVDDKRARRML 240 (327)
Q Consensus 227 ~~d~~e~KR~RR~l 240 (327)
++++.-.++.++++
T Consensus 493 Glp~~ii~~A~~~~ 506 (771)
T TIGR01069 493 GIPHFIIEQAKTFY 506 (771)
T ss_pred CcCHHHHHHHHHHH
Confidence 34444444444443
No 463
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.79 E-value=5.4e+02 Score=30.14 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
....+.|.-++++|+.+...+..++..+..++..+..++..|++.+.....-+
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~ 866 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV 866 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 34456677778888888888888888888888888888877777666555333
No 464
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=34.66 E-value=1.7e+02 Score=28.69 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020381 289 AVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 289 ~~EN~~Lkaql~~Lrakv~~ 308 (327)
..|-..|.+++..|..+|..
T Consensus 220 ~ae~seLq~r~~~l~~~L~~ 239 (289)
T COG4985 220 VAEKSELQKRLAQLQTELDA 239 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 465
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=34.44 E-value=3.6e+02 Score=28.41 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 244 ESARRSRRRKQAHLNELETQ-----AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 244 ESArRSR~RKk~~l~eLE~q-----V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
+-|-+-+..-+++++.||.+ ++++..|-..|..+-..|-+++..++.++..|--++.+++.+
T Consensus 153 ~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 153 EDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777753 455666666666666666667777777777776666666644
No 466
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.27 E-value=3.4e+02 Score=24.27 Aligned_cols=14 Identities=29% Similarity=0.161 Sum_probs=5.4
Q ss_pred HHHhhHHHHHHHHH
Q 020381 239 MLSNRESARRSRRR 252 (327)
Q Consensus 239 ~lsNRESArRSR~R 252 (327)
.|.+.=-++-...|
T Consensus 54 ~I~~~f~~~t~~LR 67 (143)
T PRK11546 54 KIHNDFYAQTSALR 67 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 44443333333333
No 467
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=33.99 E-value=2.5e+02 Score=27.19 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 020381 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQLSIF 319 (327)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~~~ 319 (327)
.|..+...++.++ .++..+...+..+=+-+..+++|.+|+-|+
T Consensus 37 ~L~~~~~~~~~~~----~~~~~~~~~l~e~~Al~rea~~r~~g~~p~ 79 (266)
T PF07517_consen 37 ELQEKTKELRERL----REGESLDDILPEAFALVREAARRTLGLRPY 79 (266)
T ss_dssp HHHHHHHHHHHHH----HTTTHHHHHHHHHHHHHHHHHHHHTS----
T ss_pred HHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHcCCccc
Confidence 4444444444444 333345555555666667778888877663
No 468
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=33.98 E-value=3e+02 Score=27.18 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
.+.+|+.+++.++.+...+..++.++
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444433
No 469
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=33.81 E-value=3.3e+02 Score=25.15 Aligned_cols=6 Identities=17% Similarity=0.340 Sum_probs=2.5
Q ss_pred CCCCCC
Q 020381 184 PLGSAD 189 (327)
Q Consensus 184 ~~g~~~ 189 (327)
+.|+++
T Consensus 66 EPGTsA 71 (176)
T PF12999_consen 66 EPGTSA 71 (176)
T ss_pred cccccc
Confidence 334443
No 470
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=33.75 E-value=3.1e+02 Score=23.67 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.+.++..+-..|....=.|...++.+..+...+..|...|+.++++|.+.|..
T Consensus 73 rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 73 RLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444444555555555555555556666666666666655543
No 471
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=33.61 E-value=3.1e+02 Score=26.92 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l 278 (327)
.||.+-+..|..++..|+.+...|..++
T Consensus 89 ~Kk~eLi~~l~~kl~~L~~eqe~l~ee~ 116 (264)
T PF08687_consen 89 AKKVELIESLSKKLEVLQEEQEALQEEI 116 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888887777776555
No 472
>PRK01156 chromosome segregation protein; Provisional
Probab=33.50 E-value=6.8e+02 Score=27.65 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSS-----------LLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~-----------L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
.......++...-..-...-.+....+..++.++..|..+... +...+..+..++..+..+=..|++++
T Consensus 353 ~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i 432 (895)
T PRK01156 353 NQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRI 432 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhh---cchhhhhhcc
Q 020381 300 ETLRAKVTYYFIRIIQ---LSIFYIMWLR 325 (327)
Q Consensus 300 ~~Lrakv~~av~r~~~---~~~~~~~~~~ 325 (327)
..|+..+.. ++.+.+ .++.-|.-++
T Consensus 433 ~~l~~~~~e-l~~~~~~l~~~~~Cp~c~~ 460 (895)
T PRK01156 433 RALRENLDE-LSRNMEMLNGQSVCPVCGT 460 (895)
T ss_pred HHHHHHHHH-HHHHHHhhccCCCCCCCCC
No 473
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=33.31 E-value=1.1e+02 Score=30.91 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
.-.|+.||+.|++++..|+++..
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l~ 81 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERLK 81 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444443
No 474
>PHA03162 hypothetical protein; Provisional
Probab=33.30 E-value=54 Score=29.15 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql 299 (327)
++|..++..|..||+.||.++
T Consensus 16 EeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555566677777777766
No 475
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.24 E-value=7.2e+02 Score=27.70 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYF 310 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av 310 (327)
.+..+.-+++..-+..++-=..+++.++.+..+++.++.+......++. .++-..+...-+..+.-+.+.+..+...+
T Consensus 513 ~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~--~~~~~~~~~~~~~a~~~l~~a~~~~~~~i 590 (782)
T PRK00409 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ--EEEDKLLEEAEKEAQQAIKEAKKEADEII 590 (782)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 020381 311 IRI 313 (327)
Q Consensus 311 ~r~ 313 (327)
+.+
T Consensus 591 ~~l 593 (782)
T PRK00409 591 KEL 593 (782)
T ss_pred HHH
No 476
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.22 E-value=3.6e+02 Score=28.72 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH-------------------------------------------HHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRK-------------------------------------------QAHLNELETQAGQLR 268 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RK-------------------------------------------k~~l~eLE~qV~~L~ 268 (327)
++.|.-++..|+++++--|.=- +..+-+||.++..
T Consensus 410 ~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~-- 487 (521)
T KOG1937|consen 410 EETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYV-- 487 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 269 ~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
.+.......++.+.+.|+.+..+|..|..++
T Consensus 488 E~~k~~l~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 488 EEQKQYLKSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
No 477
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=33.09 E-value=2.8e+02 Score=29.20 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=31.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLT 279 (327)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~ 279 (327)
+||+-|.-|-+-+-..+-+++.+|..|+.+-..|...|.
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~ 437 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLN 437 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888776667788888888888888887776665
No 478
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=33.04 E-value=4e+02 Score=24.62 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+-.++.++....-...-..-.+-+..+..+..++..++.+-..|.-+...|.++|..+..|-..|.......-.-|..
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=32.99 E-value=1.4e+02 Score=31.06 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLK--GLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~--~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++++.+|+.++..++.....+.. .-..+..++..+..+-..|+..+.-|+.-+...
T Consensus 169 ~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 169 QERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.99 E-value=3.2e+02 Score=28.07 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
|..++.-=.|-++.++.|...-+.|..-.++|....+.|+++...+...=.+|+..+++
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
No 481
>PRK14158 heat shock protein GrpE; Provisional
Probab=32.93 E-value=2.7e+02 Score=25.91 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY-FIRII 314 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a-v~r~~ 314 (327)
+.+.++..|+.+...|..++.+++.+|..+.+|..-+|.+.+.=+..++.. +..+.
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~ 93 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLI 93 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=32.69 E-value=3.2e+02 Score=24.14 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
++.+..+..+...++.+.......+..+..++..+..+...++.+...|+.+
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 483
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=32.57 E-value=15 Score=35.29 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (327)
|-.|+|...++..|+.-...|..+++.|++....+..||..|
T Consensus 121 KT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=32.53 E-value=80 Score=29.56 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+..|......|+.+|..+..+|+.|+.++.+|++.+...
T Consensus 107 ~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~ 145 (198)
T KOG0483|consen 107 TKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSL 145 (198)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
No 485
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=32.49 E-value=1.3e+02 Score=25.92 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 020381 249 SRRRKQAH--LNELETQAGQLRAEHSSLLKGLTDV--NQKYDESAVN 291 (327)
Q Consensus 249 SR~RKk~~--l~eLE~qV~~L~~EN~~L~~~l~~L--~qk~~~l~~E 291 (327)
++.+|.++ ++.++.|-..+..|++.|..+++++ ..+...|+.+
T Consensus 34 ~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les~ 80 (109)
T PF11690_consen 34 SKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALESH 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
No 486
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.41 E-value=3.8e+02 Score=29.81 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRI 313 (327)
Q Consensus 247 rRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~ 313 (327)
.|.+......-.+++.-++.|+.+...+..+...+.+....++...+.|+.+.+.|..+-...+...
T Consensus 505 ~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~ 571 (782)
T PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571 (782)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.36 E-value=3.9e+02 Score=29.76 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 248 RSRRRKQAHLNELETQAGQLRAEHSSLL--------------------KGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 248 RSR~RKk~~l~eLE~qV~~L~~EN~~L~--------------------~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
+.|..|+..+..|+.+++.|+.-+..|. .++..++++...++--|+.||+-...-..-..
T Consensus 552 ~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr 631 (716)
T KOG4593|consen 552 KARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFASKIQEFR 631 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcchhhhhhcc
Q 020381 308 YYFIRIIQLSIFYIMWLR 325 (327)
Q Consensus 308 ~av~r~~~~~~~~~~~~~ 325 (327)
.+++-++|.-.-|....|
T Consensus 632 ~ac~sL~Gykid~~~~s~ 649 (716)
T KOG4593|consen 632 DACYSLLGYKIDFTLESR 649 (716)
T ss_pred HHHHhhhhhhhhcccccc
No 488
>PHA03155 hypothetical protein; Provisional
Probab=32.31 E-value=59 Score=28.22 Aligned_cols=22 Identities=14% Similarity=0.444 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020381 278 LTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lkaql 299 (327)
+++|..++..|..||..||.++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 489
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=32.28 E-value=1.1e+02 Score=26.26 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E 291 (327)
.++..|..+..+|+.||.-|+-+++.|---+....+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 490
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=32.26 E-value=1e+02 Score=23.79 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSS----LLKGLTDVNQKYDES 288 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~----L~~~l~~L~qk~~~l 288 (327)
+.++..+|..|..|+.|... |..++..|++++.++
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL 40 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDL 40 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 491
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=32.23 E-value=4.1e+02 Score=28.01 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+.++..=.+.+..+..|...|..|+.|....+..+..++++.......-..|..++..++..|..+
T Consensus 291 e~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 291 EEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
No 492
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=32.20 E-value=4e+02 Score=26.73 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcch
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLT-----DVNQKYDESAVNNRILKADIETLRAKVTYY---FIRIIQLSI 318 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~-----~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a---v~r~~~~~~ 318 (327)
++.+..+..++..|+.+...+...+. .+.............|..++..++.++... +..+.+.++
T Consensus 52 ~~q~~~~~~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~ 124 (372)
T PF04375_consen 52 QQQLQQLQQQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSR 124 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
No 493
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.18 E-value=1.4e+02 Score=28.48 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
|+..++-+|.++..|+.--.++..++..|+++=.++...|+.-...+..+
T Consensus 132 Kkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~f 181 (210)
T KOG1691|consen 132 KKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWF 181 (210)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
No 494
>KOG2587 consensus RNA polymerase III (C) subunit [Transcription]
Probab=32.17 E-value=1.5e+02 Score=31.78 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhc
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQLSIFYIMWL 324 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~~~~~~~~ 324 (327)
+..|-.+..+.++||..|......+..-+...+.+ ..+++++.+|.......++++..+..+.-+||
T Consensus 480 iaNL~~R~~~eraEn~~LL~Ka~rve~~Ik~~e~~-~~k~~qlael~~~~~~ql~lf~r~s~l~~~~~ 546 (551)
T KOG2587|consen 480 IANLIERLRHERAENKRLLEKAQRVEAIIKGREAT-GAKEAQLAELEEMYTAQLNLFKRASQLDETIL 546 (551)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccHhhhhhHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.17 E-value=1.3e+02 Score=26.09 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN 292 (327)
...++.||.+|..|+..-..|..++..|+.++..+...+
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 496
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.05 E-value=1e+02 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred hccCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 224 TIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 224 ~~~~~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
+.+-.|....-+.++....|--+-..+.++.+.+-++|.++...+.|...|..++..|.++..
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 497
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.98 E-value=4.6e+02 Score=25.04 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Q 020381 229 DSVDDKRARRMLSNRESARRSRRRK--QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN------------NRI 294 (327)
Q Consensus 229 d~~e~KR~RR~lsNRESArRSR~RK--k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E------------N~~ 294 (327)
+.+-.++..++..++..+......+ .+.+..+..++..|+.++..+..++..+.+.+.....- .+.
T Consensus 107 ~~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~ 186 (301)
T PF14362_consen 107 EKEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKE 186 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 295 LKADIETLRAKVTYYFIRI 313 (327)
Q Consensus 295 Lkaql~~Lrakv~~av~r~ 313 (327)
.+.++..+++.+..+.++.
T Consensus 187 ~~~~~~~~~~~l~~l~~~~ 205 (301)
T PF14362_consen 187 KRAQLDAAQAELDTLQAQI 205 (301)
T ss_pred HHHHHHHHHHHHHHHHHhH
No 498
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.94 E-value=4.7e+02 Score=28.10 Aligned_cols=66 Identities=9% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 242 NRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+|| +.-+.-=..++++|-.++......+..+..+...|..++...+.+...|..++..+..++.+.
T Consensus 409 sRE--~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~L 474 (518)
T PF10212_consen 409 SRE--QLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRL 474 (518)
T ss_pred hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=31.92 E-value=3.1e+02 Score=27.48 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHS-----SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~-----~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++.+..|+.++..+..... .|.............+..+...|..++..|+.++...
T Consensus 59 ~~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l 119 (372)
T PF04375_consen 59 QQQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLAAL 119 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=31.92 E-value=2.8e+02 Score=29.39 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..|++.|...+.+....-..+...+..+.++..++..+=..|+-++..|.++.+..
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~L 486 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTREL 486 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Done!