Query 020381
Match_columns 327
No_of_seqs 190 out of 749
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 16:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.6E-14 5.6E-19 106.5 6.8 53 234-286 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.3 1.8E-11 6.2E-16 92.0 9.0 56 233-288 1-56 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 6.1E-11 2.1E-15 88.3 8.9 52 234-285 1-52 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 3.8E-11 1.3E-15 90.7 7.0 48 239-286 14-61 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 1.3E-10 4.5E-15 86.9 7.5 52 234-285 1-52 (62)
6 1gd2_E Transcription factor PA 99.0 1.3E-09 4.3E-14 84.2 8.3 60 236-295 10-69 (70)
7 1ci6_A Transcription factor AT 98.8 5.4E-09 1.8E-13 78.7 7.0 50 234-283 2-51 (63)
8 1gu4_A CAAT/enhancer binding p 98.5 6.6E-07 2.3E-11 70.3 9.3 55 233-287 14-68 (78)
9 1hjb_A Ccaat/enhancer binding 98.5 8.7E-07 3E-11 70.9 9.8 50 233-282 14-63 (87)
10 3a5t_A Transcription factor MA 98.4 9.2E-09 3.2E-13 85.2 -2.3 45 231-275 34-78 (107)
11 2wt7_B Transcription factor MA 98.2 1.1E-05 3.6E-10 65.1 9.8 52 231-282 24-75 (90)
12 2oqq_A Transcription factor HY 97.1 0.001 3.6E-08 46.5 6.1 39 254-299 2-40 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.0 0.067 2.3E-06 42.2 10.1 56 257-312 22-77 (81)
14 1skn_P DNA-binding domain of S 95.9 0.0035 1.2E-07 50.4 2.6 32 231-262 59-90 (92)
15 1deb_A APC protein, adenomatou 95.4 0.058 2E-06 39.3 7.0 48 257-304 5-52 (54)
16 3hnw_A Uncharacterized protein 94.5 0.25 8.6E-06 42.0 9.9 55 254-308 74-128 (138)
17 2w6a_A ARF GTPase-activating p 94.2 0.19 6.3E-06 37.7 7.3 41 257-297 22-62 (63)
18 2jee_A YIIU; FTSZ, septum, coi 93.7 0.59 2E-05 36.8 9.7 52 255-306 6-57 (81)
19 3s9g_A Protein hexim1; cyclin 93.2 0.46 1.6E-05 38.9 8.5 48 256-303 38-92 (104)
20 2v66_B Nuclear distribution pr 92.5 4 0.00014 33.8 13.8 57 256-312 36-92 (111)
21 1go4_E MAD1 (mitotic arrest de 91.5 0.97 3.3E-05 36.9 8.5 30 256-285 13-42 (100)
22 3hnw_A Uncharacterized protein 91.4 1.9 6.6E-05 36.5 10.8 52 255-306 82-133 (138)
23 3m48_A General control protein 91.3 0.22 7.6E-06 33.1 3.7 27 257-283 2-28 (33)
24 2v71_A Nuclear distribution pr 91.3 4.9 0.00017 36.0 13.7 56 257-312 90-145 (189)
25 2eqb_B RAB guanine nucleotide 91.1 1.4 4.9E-05 35.7 9.1 52 255-306 12-63 (97)
26 1kd8_B GABH BLL, GCN4 acid bas 90.8 0.41 1.4E-05 32.3 4.7 30 256-285 2-31 (36)
27 2oxj_A Hybrid alpha/beta pepti 90.7 0.32 1.1E-05 32.5 4.1 27 256-282 2-28 (34)
28 2dfs_A Myosin-5A; myosin-V, in 89.8 2.7 9.2E-05 46.1 12.8 53 255-307 991-1047(1080)
29 3a7p_A Autophagy protein 16; c 89.4 6.8 0.00023 34.1 12.5 71 235-305 69-139 (152)
30 3c3f_A Alpha/beta peptide with 88.5 0.61 2.1E-05 31.2 4.1 28 256-283 2-29 (34)
31 2c9l_Y EB1, zebra, BZLF1 trans 88.5 2.5 8.6E-05 31.2 7.8 37 239-275 6-42 (63)
32 1kd8_A GABH AIV, GCN4 acid bas 88.5 0.56 1.9E-05 31.7 3.9 30 256-285 2-31 (36)
33 1wlq_A Geminin; coiled-coil; 2 88.3 2.9 9.9E-05 33.1 8.6 49 266-315 35-83 (83)
34 3oja_B Anopheles plasmodium-re 88.2 3.7 0.00013 40.5 11.5 19 284-302 559-577 (597)
35 1p9i_A Cortexillin I/GCN4 hybr 87.9 0.87 3E-05 29.3 4.4 25 282-306 5-29 (31)
36 3he5_A Synzip1; heterodimeric 87.7 2.2 7.6E-05 29.9 6.7 44 256-306 4-47 (49)
37 2wvr_A Geminin; DNA replicatio 87.7 2.9 0.0001 38.0 9.4 50 267-317 113-162 (209)
38 3cve_A Homer protein homolog 1 87.6 3.1 0.00011 32.0 8.2 50 258-307 3-52 (72)
39 3vmx_A Voltage-gated hydrogen 87.4 1.8 6.2E-05 31.0 6.3 37 261-297 3-39 (48)
40 3c3g_A Alpha/beta peptide with 87.1 0.84 2.9E-05 30.3 4.1 27 257-283 2-28 (33)
41 1gd2_E Transcription factor PA 87.0 1.4 4.7E-05 33.6 6.0 34 274-307 34-67 (70)
42 3a7p_A Autophagy protein 16; c 86.8 4.6 0.00016 35.1 9.8 50 257-306 84-133 (152)
43 1uo4_A General control protein 86.8 0.8 2.7E-05 30.6 3.9 28 256-283 2-29 (34)
44 2bni_A General control protein 86.6 0.83 2.9E-05 30.5 3.9 28 256-283 2-29 (34)
45 2hy6_A General control protein 86.3 0.88 3E-05 30.4 3.9 28 256-283 2-29 (34)
46 3mq7_A Bone marrow stromal ant 85.9 3.9 0.00013 34.3 8.5 51 258-308 60-110 (121)
47 3cvf_A Homer-3, homer protein 85.8 2 6.8E-05 33.6 6.4 50 257-306 8-57 (79)
48 3a2a_A Voltage-gated hydrogen 85.4 2.3 7.7E-05 31.4 6.0 38 260-297 9-46 (58)
49 2wq1_A General control protein 85.2 1.2 4.1E-05 29.6 4.1 27 257-283 2-28 (33)
50 2kz5_A Transcription factor NF 85.2 0.08 2.7E-06 42.6 -1.9 25 231-255 63-87 (91)
51 3s9g_A Protein hexim1; cyclin 85.1 4.4 0.00015 33.1 8.3 31 254-284 64-94 (104)
52 2xdj_A Uncharacterized protein 84.7 6.9 0.00024 30.6 9.1 47 256-302 21-67 (83)
53 3mq7_A Bone marrow stromal ant 84.4 5 0.00017 33.6 8.5 38 263-300 72-109 (121)
54 2ve7_C Kinetochore protein NUF 84.3 0.94 3.2E-05 41.8 4.6 57 232-288 118-181 (250)
55 3ol1_A Vimentin; structural ge 84.1 9.8 0.00033 31.2 10.3 9 295-303 88-96 (119)
56 3m91_A Proteasome-associated A 83.6 5 0.00017 28.9 7.2 40 256-302 10-49 (51)
57 3u1c_A Tropomyosin alpha-1 cha 83.4 15 0.00053 29.2 12.7 9 298-306 87-95 (101)
58 3efg_A Protein SLYX homolog; x 83.1 3.3 0.00011 31.9 6.6 47 255-301 14-60 (78)
59 4etp_A Kinesin-like protein KA 83.0 4 0.00014 39.9 8.7 53 253-305 8-60 (403)
60 1nkp_B MAX protein, MYC proto- 82.3 1.6 5.6E-05 33.3 4.5 21 255-275 47-67 (83)
61 2zxx_A Geminin; coiled-coil, c 82.2 6.7 0.00023 30.7 8.0 38 267-304 32-69 (79)
62 3swf_A CGMP-gated cation chann 81.8 5.2 0.00018 31.0 7.1 49 258-309 3-51 (74)
63 3swy_A Cyclic nucleotide-gated 81.8 6.2 0.00021 27.9 6.9 44 259-305 2-45 (46)
64 3bas_A Myosin heavy chain, str 81.6 17 0.00057 28.3 12.8 53 254-306 34-86 (89)
65 3o0z_A RHO-associated protein 81.5 15 0.00051 32.4 10.9 64 234-304 69-132 (168)
66 2yy0_A C-MYC-binding protein; 81.4 2.5 8.5E-05 30.5 4.9 20 262-281 19-38 (53)
67 2dgc_A Protein (GCN4); basic d 81.3 2 6.7E-05 31.9 4.5 31 276-306 30-60 (63)
68 1t2k_D Cyclic-AMP-dependent tr 81.3 10 0.00035 27.4 8.3 32 277-308 23-54 (61)
69 3efg_A Protein SLYX homolog; x 81.2 4.3 0.00015 31.3 6.6 52 258-309 10-61 (78)
70 3m9b_A Proteasome-associated A 81.2 1.7 6E-05 40.5 5.1 43 254-296 53-95 (251)
71 2oa5_A Hypothetical protein BQ 80.9 5.9 0.0002 32.8 7.6 55 255-309 8-75 (110)
72 2w83_C C-JUN-amino-terminal ki 80.6 9.5 0.00032 29.7 8.2 47 259-305 6-59 (77)
73 2yy0_A C-MYC-binding protein; 80.4 3.1 0.00011 30.0 5.1 30 270-299 20-49 (53)
74 3s4r_A Vimentin; alpha-helix, 80.1 13 0.00045 29.3 9.2 27 278-304 58-84 (93)
75 3o0z_A RHO-associated protein 80.1 16 0.00055 32.2 10.6 48 250-299 31-78 (168)
76 2oqq_A Transcription factor HY 79.9 3.5 0.00012 28.7 5.0 25 254-278 16-40 (42)
77 1ci6_A Transcription factor AT 79.8 6.3 0.00022 29.0 6.8 32 277-308 24-55 (63)
78 1gu4_A CAAT/enhancer binding p 79.0 18 0.00061 28.0 9.4 52 234-285 19-73 (78)
79 1x8y_A Lamin A/C; structural p 78.9 19 0.00065 27.9 9.7 55 253-307 26-80 (86)
80 3jsv_C NF-kappa-B essential mo 78.8 21 0.00073 28.7 10.0 71 240-310 8-81 (94)
81 1fmh_A General control protein 78.7 4.2 0.00014 26.5 4.7 28 257-284 3-30 (33)
82 3u06_A Protein claret segregat 78.5 5.6 0.00019 39.1 8.0 50 255-304 10-59 (412)
83 2oxj_A Hybrid alpha/beta pepti 78.2 3.4 0.00012 27.6 4.3 29 278-306 3-31 (34)
84 3a7o_A Autophagy protein 16; c 78.2 8.8 0.0003 29.6 7.3 50 255-304 25-74 (75)
85 1dh3_A Transcription factor CR 78.1 2.1 7.3E-05 30.9 3.7 31 276-306 22-52 (55)
86 1nlw_A MAD protein, MAX dimeri 77.8 4.3 0.00015 31.3 5.6 31 255-285 47-77 (80)
87 2v71_A Nuclear distribution pr 77.6 39 0.0013 30.2 13.7 50 260-309 86-135 (189)
88 3oja_B Anopheles plasmodium-re 77.4 23 0.00078 34.8 12.1 48 259-306 513-560 (597)
89 2r2v_A GCN4 leucine zipper; co 77.2 3.4 0.00011 27.6 4.1 28 256-283 2-29 (34)
90 1gk6_A Vimentin; intermediate 77.2 9.5 0.00032 27.7 7.0 49 258-306 3-51 (59)
91 1dip_A Delta-sleep-inducing pe 77.1 1.4 4.8E-05 34.3 2.6 26 272-297 18-43 (78)
92 3i00_A HIP-I, huntingtin-inter 76.8 19 0.00064 29.9 9.6 48 250-304 35-82 (120)
93 4h22_A Leucine-rich repeat fli 76.6 16 0.00056 29.8 8.9 75 231-308 7-83 (103)
94 3vkg_A Dynein heavy chain, cyt 76.5 8.5 0.00029 47.0 10.1 56 261-316 2027-2082(3245)
95 3oja_A Leucine-rich immune mol 76.3 21 0.00071 34.5 11.3 45 267-311 433-477 (487)
96 3oja_A Leucine-rich immune mol 76.3 33 0.0011 33.1 12.7 38 250-287 430-467 (487)
97 3he5_A Synzip1; heterodimeric 76.3 15 0.00051 25.7 7.3 18 281-298 8-25 (49)
98 1wt6_A Myotonin-protein kinase 76.1 26 0.0009 27.5 9.7 59 242-303 14-72 (81)
99 2lw1_A ABC transporter ATP-bin 76.0 14 0.00048 28.5 8.2 55 254-308 21-81 (89)
100 1ic2_A Tropomyosin alpha chain 75.5 24 0.00083 26.8 9.6 54 255-308 20-73 (81)
101 1jnm_A Proto-oncogene C-JUN; B 75.1 6.3 0.00022 28.6 5.6 33 276-308 22-54 (62)
102 3m9b_A Proteasome-associated A 74.4 3.5 0.00012 38.5 5.0 43 261-303 53-95 (251)
103 1joc_A EEA1, early endosomal a 74.3 20 0.00068 29.4 9.2 44 255-298 11-54 (125)
104 2wt7_B Transcription factor MA 73.9 25 0.00085 28.0 9.2 54 246-306 28-85 (90)
105 1hjb_A Ccaat/enhancer binding 73.8 22 0.00075 28.0 8.8 32 255-286 43-74 (87)
106 2xv5_A Lamin-A/C; structural p 73.8 22 0.00074 27.2 8.5 50 258-307 8-57 (74)
107 3u59_A Tropomyosin beta chain; 73.8 31 0.0011 27.2 12.7 34 258-291 26-59 (101)
108 2ocy_A RAB guanine nucleotide 73.8 12 0.00043 32.4 8.0 50 257-306 46-95 (154)
109 3iv1_A Tumor susceptibility ge 73.6 30 0.001 26.9 10.3 58 251-308 14-71 (78)
110 2xdj_A Uncharacterized protein 73.5 12 0.00043 29.1 7.3 36 253-288 25-60 (83)
111 3m48_A General control protein 73.2 3.7 0.00013 27.3 3.5 28 279-306 3-30 (33)
112 4emc_A Monopolin complex subun 73.2 5.8 0.0002 35.7 5.9 43 256-305 14-56 (190)
113 1t6f_A Geminin; coiled-coil, c 72.9 6.8 0.00023 26.5 4.7 29 268-296 6-34 (37)
114 1i84_S Smooth muscle myosin he 72.9 25 0.00086 38.6 12.0 19 286-304 916-934 (1184)
115 2v4h_A NF-kappa-B essential mo 72.6 39 0.0014 27.9 12.9 69 241-309 31-102 (110)
116 2wuj_A Septum site-determining 72.4 3.7 0.00013 29.7 3.7 29 255-283 27-55 (57)
117 2dfs_A Myosin-5A; myosin-V, in 72.3 29 0.00099 38.1 12.3 13 35-47 700-712 (1080)
118 2v66_B Nuclear distribution pr 72.3 28 0.00095 28.7 9.4 50 251-300 52-101 (111)
119 3ghg_A Fibrinogen alpha chain; 72.3 26 0.00089 36.0 11.0 37 273-309 114-150 (562)
120 1ic2_A Tropomyosin alpha chain 71.8 22 0.00074 27.0 8.2 49 261-309 19-67 (81)
121 3na7_A HP0958; flagellar bioge 71.7 57 0.002 29.3 13.3 24 258-281 93-116 (256)
122 4h22_A Leucine-rich repeat fli 71.6 16 0.00055 29.9 7.7 43 257-299 39-81 (103)
123 1dip_A Delta-sleep-inducing pe 71.2 4.3 0.00015 31.6 4.0 22 255-276 22-43 (78)
124 1uii_A Geminin; human, DNA rep 71.1 26 0.0009 27.6 8.5 30 268-297 45-74 (83)
125 3u1c_A Tropomyosin alpha-1 cha 70.8 38 0.0013 26.9 10.3 53 256-308 24-76 (101)
126 4emc_A Monopolin complex subun 70.8 16 0.00054 32.8 8.1 37 257-293 22-58 (190)
127 3m91_A Proteasome-associated A 70.5 19 0.00064 25.9 7.0 21 287-307 27-47 (51)
128 1nkp_A C-MYC, MYC proto-oncoge 69.7 12 0.00043 29.0 6.5 17 287-303 70-86 (88)
129 1am9_A Srebp-1A, protein (ster 69.6 7.1 0.00024 29.9 5.0 28 239-266 7-34 (82)
130 1c1g_A Tropomyosin; contractIl 69.5 48 0.0017 27.6 13.8 28 275-302 229-256 (284)
131 1gk7_A Vimentin; intermediate 68.9 6.7 0.00023 26.6 4.1 30 272-301 9-38 (39)
132 3na7_A HP0958; flagellar bioge 68.6 28 0.00095 31.5 9.6 27 255-281 53-79 (256)
133 3plt_A Sphingolipid long chain 68.5 26 0.00089 32.3 9.3 72 233-309 92-165 (234)
134 1gk4_A Vimentin; intermediate 67.7 39 0.0013 25.9 10.3 56 251-306 22-77 (84)
135 1wt6_A Myotonin-protein kinase 67.4 25 0.00086 27.6 7.7 51 258-308 17-70 (81)
136 1a93_B MAX protein, coiled coi 67.3 8.1 0.00028 25.8 4.1 23 280-302 11-33 (34)
137 2w83_C C-JUN-amino-terminal ki 66.8 11 0.00037 29.4 5.4 37 272-308 33-69 (77)
138 3c3f_A Alpha/beta peptide with 66.3 9.6 0.00033 25.4 4.3 29 278-306 3-31 (34)
139 1p9i_A Cortexillin I/GCN4 hybr 65.9 8.4 0.00029 24.7 3.8 27 258-284 2-28 (31)
140 3nmd_A CGMP dependent protein 65.7 22 0.00077 27.3 7.0 27 253-279 38-64 (72)
141 1fmh_A General control protein 65.5 8.3 0.00028 25.0 3.8 29 278-306 3-31 (33)
142 3ra3_A P1C; coiled coil domain 65.5 3.8 0.00013 25.8 2.1 22 266-287 4-25 (28)
143 1kd8_B GABH BLL, GCN4 acid bas 65.5 12 0.0004 25.3 4.7 30 279-308 4-33 (36)
144 2wuj_A Septum site-determining 65.4 5.3 0.00018 28.9 3.3 29 278-306 29-57 (57)
145 2wt7_A Proto-oncogene protein 65.3 37 0.0013 24.7 9.4 33 276-308 23-55 (63)
146 3u59_A Tropomyosin beta chain; 65.1 49 0.0017 26.0 10.3 11 297-307 86-96 (101)
147 3c3g_A Alpha/beta peptide with 64.9 11 0.00037 25.0 4.3 28 279-306 3-30 (33)
148 1fmh_B General control protein 63.9 12 0.00041 24.3 4.3 27 280-306 5-31 (33)
149 2e7s_A RAB guanine nucleotide 63.7 26 0.00089 29.8 7.7 52 256-307 33-84 (135)
150 2j5u_A MREC protein; bacterial 63.6 3.4 0.00012 37.9 2.5 32 267-298 24-58 (255)
151 3htk_A Structural maintenance 63.2 34 0.0011 24.1 7.3 33 255-287 12-44 (60)
152 1go4_E MAD1 (mitotic arrest de 62.6 13 0.00044 30.2 5.4 33 276-308 12-44 (100)
153 3ghg_A Fibrinogen alpha chain; 62.2 30 0.001 35.6 9.1 40 270-309 103-143 (562)
154 3lay_A Zinc resistance-associa 61.4 27 0.00093 30.6 7.8 34 283-317 113-146 (175)
155 3tnu_A Keratin, type I cytoske 60.4 69 0.0024 26.2 9.7 47 258-304 80-126 (131)
156 3mq9_A Bone marrow stromal ant 59.7 83 0.0029 30.0 11.6 32 276-307 436-467 (471)
157 3mq9_A Bone marrow stromal ant 58.4 66 0.0023 30.7 10.6 18 292-309 445-462 (471)
158 3swk_A Vimentin; cytoskeleton, 57.9 63 0.0022 25.0 9.2 52 258-309 3-61 (86)
159 2oto_A M protein; helical coil 57.9 71 0.0024 26.7 9.6 31 258-288 53-83 (155)
160 3m0d_C TNF receptor-associated 57.6 53 0.0018 24.0 9.7 56 253-308 4-59 (65)
161 3tnu_B Keratin, type II cytosk 57.6 70 0.0024 26.1 9.2 28 258-285 46-73 (129)
162 2fic_A Bridging integrator 1; 57.5 82 0.0028 27.6 10.4 28 274-304 184-211 (251)
163 4etp_A Kinesin-like protein KA 57.0 33 0.0011 33.3 8.3 34 256-289 4-37 (403)
164 3cvf_A Homer-3, homer protein 56.9 67 0.0023 24.9 8.4 48 255-302 27-74 (79)
165 1jcd_A Major outer membrane li 56.5 52 0.0018 23.6 7.7 29 256-284 5-33 (52)
166 3vkg_A Dynein heavy chain, cyt 56.3 1.1E+02 0.0038 37.7 13.9 72 238-309 2018-2103(3245)
167 1nkp_B MAX protein, MYC proto- 55.8 36 0.0012 25.6 6.7 9 255-263 19-27 (83)
168 3e98_A GAF domain of unknown f 55.2 29 0.00099 31.7 7.1 48 258-309 68-115 (252)
169 3w03_C DNA repair protein XRCC 54.8 18 0.00062 32.2 5.5 31 255-285 152-182 (184)
170 1deq_A Fibrinogen (alpha chain 54.3 40 0.0014 33.2 8.3 39 271-309 115-153 (390)
171 1uix_A RHO-associated kinase; 54.2 71 0.0024 24.4 8.2 30 260-289 2-31 (71)
172 1nkp_A C-MYC, MYC proto-oncoge 54.0 49 0.0017 25.6 7.3 11 255-265 23-33 (88)
173 1zme_C Proline utilization tra 53.2 9.4 0.00032 27.2 2.9 24 255-278 44-67 (70)
174 3u06_A Protein claret segregat 51.6 32 0.0011 33.7 7.2 37 265-301 6-42 (412)
175 4dzn_A Coiled-coil peptide CC- 51.6 38 0.0013 21.9 5.1 23 260-282 7-29 (33)
176 3trt_A Vimentin; cytoskeleton, 51.3 64 0.0022 23.8 7.3 39 257-295 37-75 (77)
177 2hy6_A General control protein 51.2 23 0.00079 23.6 4.1 28 279-306 4-31 (34)
178 1am9_A Srebp-1A, protein (ster 50.5 75 0.0026 24.1 7.8 26 254-279 49-74 (82)
179 1s1c_X RHO-associated, coiled- 50.4 74 0.0025 24.3 7.5 31 259-289 3-33 (71)
180 1m1j_A Fibrinogen alpha subuni 49.9 1E+02 0.0035 31.2 10.5 38 272-309 114-151 (491)
181 2bni_A General control protein 49.9 17 0.00059 24.2 3.4 28 279-306 4-31 (34)
182 1wle_A Seryl-tRNA synthetase; 49.7 79 0.0027 31.8 9.9 50 260-309 82-142 (501)
183 3mov_A Lamin-B1; LMNB1, B-type 48.2 1E+02 0.0034 24.4 10.3 52 255-306 37-88 (95)
184 1uo4_A General control protein 48.1 21 0.00074 23.7 3.6 28 279-306 4-31 (34)
185 1kd8_A GABH AIV, GCN4 acid bas 47.7 25 0.00084 23.7 3.9 27 281-307 6-32 (36)
186 2zvf_A Alanyl-tRNA synthetase; 47.5 15 0.00052 30.6 3.7 24 283-306 32-55 (171)
187 3he5_B Synzip2; heterodimeric 47.3 72 0.0025 22.5 6.8 30 274-303 8-37 (52)
188 3tnu_B Keratin, type II cytosk 47.0 1.1E+02 0.0039 24.7 10.3 10 232-241 37-46 (129)
189 3i00_A HIP-I, huntingtin-inter 47.0 95 0.0033 25.6 8.4 16 253-268 45-60 (120)
190 3q0x_A Centriole protein; cent 47.0 73 0.0025 29.1 8.4 56 233-294 162-217 (228)
191 3q0x_A Centriole protein; cent 46.6 39 0.0013 30.9 6.5 21 286-306 188-208 (228)
192 1ik9_A DNA repair protein XRCC 46.6 54 0.0018 29.5 7.3 15 108-122 60-74 (213)
193 3nmd_A CGMP dependent protein 46.5 49 0.0017 25.4 6.0 27 277-303 41-67 (72)
194 3ra3_A P1C; coiled coil domain 46.4 16 0.00056 22.9 2.7 23 286-308 3-25 (28)
195 2oto_A M protein; helical coil 45.1 1.2E+02 0.004 25.4 8.9 44 260-303 34-77 (155)
196 3qh9_A Liprin-beta-2; coiled-c 44.6 1.1E+02 0.0038 23.9 8.9 24 255-278 26-49 (81)
197 2wq1_A General control protein 44.4 38 0.0013 22.4 4.3 27 280-306 4-30 (33)
198 4ath_A MITF, microphthalmia-as 44.2 98 0.0034 24.2 7.6 18 287-304 60-77 (83)
199 2v4h_A NF-kappa-B essential mo 43.5 1.4E+02 0.0047 24.6 10.0 43 256-305 63-105 (110)
200 1ik9_A DNA repair protein XRCC 43.5 1.8E+02 0.0061 26.0 10.3 25 256-280 140-164 (213)
201 4b4t_K 26S protease regulatory 43.3 32 0.0011 33.8 5.7 16 259-274 46-61 (428)
202 2lz1_A Nuclear factor erythroi 43.2 0.44 1.5E-05 38.2 -6.1 23 232-254 64-86 (90)
203 1d7m_A Cortexillin I; coiled-c 43.1 1.3E+02 0.0044 24.2 10.3 45 244-288 14-58 (101)
204 1nlw_A MAD protein, MAX dimeri 42.6 32 0.0011 26.3 4.5 25 282-306 53-77 (80)
205 2ve7_A Kinetochore protein HEC 42.4 51 0.0017 31.0 6.8 33 260-292 183-215 (315)
206 3thf_A Protein shroom; coiled- 42.3 1.3E+02 0.0046 26.8 9.1 42 250-302 14-55 (190)
207 2efr_A General control protein 42.3 1.7E+02 0.0057 25.2 10.3 69 239-307 54-122 (155)
208 4dzo_A Mitotic spindle assembl 41.8 48 0.0017 27.4 5.8 23 256-278 5-27 (123)
209 4ath_A MITF, microphthalmia-as 41.8 56 0.0019 25.6 5.8 31 255-285 49-79 (83)
210 1wle_A Seryl-tRNA synthetase; 41.7 2.6E+02 0.0089 28.0 12.2 32 256-287 71-102 (501)
211 1lwu_C Fibrinogen gamma chain; 41.3 74 0.0025 30.4 7.8 19 260-278 17-35 (323)
212 3qne_A Seryl-tRNA synthetase, 40.4 1.1E+02 0.0037 30.8 9.1 49 261-309 46-97 (485)
213 3ra3_B P2F; coiled coil domain 40.0 24 0.00082 22.1 2.7 12 292-303 9-20 (28)
214 1hlo_A Protein (transcription 39.9 25 0.00084 26.5 3.4 10 255-264 29-38 (80)
215 3a2a_A Voltage-gated hydrogen 39.1 89 0.003 23.0 6.1 25 258-282 21-45 (58)
216 1zxa_A CGMP-dependent protein 38.9 59 0.002 24.5 5.3 30 251-280 21-50 (67)
217 1ytz_T Troponin T; muscle, THI 38.6 1.3E+02 0.0043 24.5 7.7 63 247-309 20-89 (107)
218 3bbp_D GRIP and coiled-coil do 38.4 30 0.001 26.5 3.6 18 285-302 45-62 (71)
219 4dzo_A Mitotic spindle assembl 38.3 77 0.0026 26.1 6.5 41 276-316 4-44 (123)
220 3mtu_A Tropomyosin alpha-1 cha 37.6 73 0.0025 24.1 5.8 42 255-296 16-57 (75)
221 3iox_A AGI/II, PA; alpha helix 37.6 1.8E+02 0.006 29.6 10.1 31 257-287 36-66 (497)
222 4b4t_K 26S protease regulatory 37.6 49 0.0017 32.5 6.0 17 259-275 53-69 (428)
223 2b5u_A Colicin E3; high resolu 37.2 3.6E+02 0.012 27.6 12.9 82 224-309 287-368 (551)
224 3bas_A Myosin heavy chain, str 37.1 1.4E+02 0.0048 22.9 10.3 53 257-309 30-82 (89)
225 3oa7_A Head morphogenesis prot 37.0 1.2E+02 0.004 27.5 7.9 66 228-303 6-71 (206)
226 1lwu_C Fibrinogen gamma chain; 36.9 90 0.0031 29.8 7.6 17 264-280 28-44 (323)
227 2er8_A Regulatory protein Leu3 36.4 19 0.00065 25.8 2.3 21 254-274 48-68 (72)
228 1ez3_A Syntaxin-1A; three heli 36.3 1.5E+02 0.0052 23.1 8.3 21 293-313 91-111 (127)
229 2p4v_A Transcription elongatio 35.8 1.6E+02 0.0054 24.9 8.3 53 257-309 11-72 (158)
230 3q8t_A Beclin-1; autophagy, AT 35.7 1.6E+02 0.0054 23.1 12.4 26 264-289 27-52 (96)
231 2aze_A Transcription factor DP 35.6 1.3E+02 0.0044 26.1 7.7 18 251-268 22-39 (155)
232 3vmx_A Voltage-gated hydrogen 35.4 1.2E+02 0.0041 21.6 7.0 24 281-304 16-39 (48)
233 3iox_A AGI/II, PA; alpha helix 35.0 1.4E+02 0.0048 30.4 8.9 32 258-289 30-61 (497)
234 3htk_A Structural maintenance 35.0 1.1E+02 0.0039 21.2 9.2 48 257-304 7-54 (60)
235 3hhm_B NISH2 P85alpha; PI3KCA, 34.8 2E+02 0.007 27.7 9.9 33 274-306 217-249 (373)
236 3w03_C DNA repair protein XRCC 32.8 93 0.0032 27.6 6.5 34 255-288 145-178 (184)
237 3pik_A Cation efflux system pr 32.8 2.9E+02 0.0098 25.2 13.7 33 289-321 407-444 (446)
238 1ses_A Seryl-tRNA synthetase; 32.7 3.5E+02 0.012 26.2 11.7 54 255-308 28-89 (421)
239 3lay_A Zinc resistance-associa 32.3 2.5E+02 0.0086 24.4 9.7 9 121-129 30-38 (175)
240 2zvf_A Alanyl-tRNA synthetase; 32.1 1E+02 0.0035 25.5 6.5 30 259-288 29-58 (171)
241 2r2v_A GCN4 leucine zipper; co 31.5 79 0.0027 21.0 4.3 28 279-306 4-31 (34)
242 2oa5_A Hypothetical protein BQ 31.4 26 0.00088 29.0 2.4 22 279-300 11-32 (110)
243 2eqb_B RAB guanine nucleotide 31.2 2E+02 0.007 23.0 9.6 43 266-308 44-94 (97)
244 3he4_A Synzip6; heterodimeric 30.7 72 0.0025 22.8 4.3 28 258-285 20-47 (56)
245 1hlo_A Protein (transcription 30.6 48 0.0016 24.9 3.7 20 285-304 59-78 (80)
246 1j1d_B Troponin T, TNT; THIN f 30.5 2.2E+02 0.0074 23.1 9.6 45 265-309 45-89 (106)
247 2akf_A Coronin-1A; coiled coil 30.4 1.1E+02 0.0038 19.8 4.8 25 259-283 3-27 (32)
248 1grj_A GREA protein; transcrip 30.1 2.4E+02 0.0084 23.6 8.7 53 257-309 11-72 (158)
249 2ve7_C Kinetochore protein NUF 30.1 45 0.0015 30.5 4.1 39 271-309 143-181 (250)
250 2dq0_A Seryl-tRNA synthetase; 29.9 1.7E+02 0.0058 28.8 8.5 50 260-309 43-95 (455)
251 1m1j_B Fibrinogen beta chain; 29.7 2.2E+02 0.0074 28.6 9.3 16 293-308 171-186 (464)
252 3cve_A Homer protein homolog 1 29.5 1.9E+02 0.0064 22.0 10.6 47 255-301 21-67 (72)
253 4ati_A MITF, microphthalmia-as 29.3 43 0.0015 27.3 3.5 21 285-305 93-113 (118)
254 3lss_A Seryl-tRNA synthetase; 29.0 2.1E+02 0.0071 28.7 9.0 18 292-309 113-130 (484)
255 1lrz_A FEMA, factor essential 28.7 1.3E+02 0.0046 28.6 7.4 54 255-309 247-300 (426)
256 3mud_A DNA repair protein XRCC 28.7 2E+02 0.0069 25.3 7.9 13 108-120 63-75 (175)
257 1fmh_B General control protein 28.6 1.2E+02 0.0041 19.6 5.0 28 258-285 4-31 (33)
258 3qne_A Seryl-tRNA synthetase, 28.4 4.6E+02 0.016 26.2 11.5 55 254-308 46-103 (485)
259 3rrk_A V-type ATPase 116 kDa s 28.3 3E+02 0.01 25.2 9.6 30 255-284 226-255 (357)
260 4a3a_A Amphiphysin; structural 28.2 2.4E+02 0.0081 25.2 8.6 51 250-303 139-196 (243)
261 4gkw_A Spindle assembly abnorm 28.1 2.3E+02 0.0079 24.3 7.9 21 264-284 114-134 (167)
262 2dq0_A Seryl-tRNA synthetase; 27.6 4.5E+02 0.015 25.8 12.8 51 259-309 35-88 (455)
263 2i1j_A Moesin; FERM, coiled-co 27.6 52 0.0018 33.4 4.5 53 257-309 337-389 (575)
264 3vem_A Helicase protein MOM1; 27.6 2.6E+02 0.009 23.1 11.1 66 232-309 40-105 (115)
265 1uii_A Geminin; human, DNA rep 27.4 2.2E+02 0.0077 22.3 8.4 29 276-304 46-74 (83)
266 3s4r_A Vimentin; alpha-helix, 27.4 2.2E+02 0.0075 22.2 10.0 45 262-308 23-67 (93)
267 3a5t_A Transcription factor MA 26.9 3.6 0.00012 33.8 -3.4 40 270-309 59-98 (107)
268 3v86_A De novo design helix; c 26.9 89 0.0031 19.4 3.7 19 260-278 5-23 (27)
269 3qh9_A Liprin-beta-2; coiled-c 26.4 2.3E+02 0.0079 22.1 9.0 41 259-306 23-63 (81)
270 3gp4_A Transcriptional regulat 26.4 1.8E+02 0.006 23.9 6.8 11 258-268 91-101 (142)
271 1ses_A Seryl-tRNA synthetase; 26.3 2.6E+02 0.0089 27.1 9.1 27 282-308 70-96 (421)
272 3m0a_A TNF receptor-associated 25.7 1.8E+02 0.0063 20.7 9.4 50 259-308 9-58 (66)
273 4ani_A Protein GRPE; chaperone 25.7 3E+02 0.01 24.7 8.7 10 258-267 69-78 (213)
274 1fzc_C Fibrin; blood coagulati 25.5 35 0.0012 32.6 2.6 31 256-286 5-35 (319)
275 2fxo_A Myosin heavy chain, car 25.5 2.7E+02 0.0092 22.6 13.3 79 231-309 31-116 (129)
276 2cly_A ATP synthase B chain, m 25.0 2.4E+02 0.0081 25.4 7.9 32 257-288 117-148 (214)
277 4ani_A Protein GRPE; chaperone 24.9 2.3E+02 0.0077 25.5 7.7 24 256-279 60-83 (213)
278 1s94_A S-syntaxin; three helix 24.8 2.9E+02 0.01 23.1 8.1 21 293-313 122-142 (180)
279 2l5g_A GPS2 protein, G protein 24.4 84 0.0029 21.4 3.5 21 255-275 15-35 (38)
280 2zqm_A Prefoldin beta subunit 24.2 1.6E+02 0.0056 22.6 6.0 13 295-307 96-108 (117)
281 1m1j_B Fibrinogen beta chain; 24.0 5.5E+02 0.019 25.6 13.3 56 254-309 134-194 (464)
282 3tq7_B Microtubule-associated 23.8 1.5E+02 0.0051 23.0 5.5 34 255-288 8-41 (82)
283 2zqm_A Prefoldin beta subunit 23.5 2.5E+02 0.0086 21.5 7.3 10 295-304 89-98 (117)
284 3cl3_D NF-kappa-B essential mo 23.3 45 0.0015 28.3 2.6 18 291-308 56-73 (130)
285 1fxk_C Protein (prefoldin); ar 23.3 2E+02 0.0068 22.9 6.5 38 254-291 94-131 (133)
286 2gkw_A TNF receptor-associated 23.1 1.3E+02 0.0045 25.6 5.6 32 258-289 3-34 (192)
287 4b4t_J 26S protease regulatory 23.0 89 0.0031 30.6 5.0 21 255-275 25-45 (405)
288 1g6u_A Domain swapped dimer; d 22.9 1.4E+02 0.005 20.6 4.6 19 288-306 25-43 (48)
289 3t97_B Nuclear pore complex pr 22.8 2.4E+02 0.0081 21.2 6.2 34 254-287 9-42 (65)
290 2aze_B Transcription factor E2 22.6 2.2E+02 0.0075 22.8 6.5 34 257-290 8-41 (106)
291 1fxk_A Prefoldin; archaeal pro 22.5 2.5E+02 0.0085 21.3 6.7 34 274-307 70-103 (107)
292 2f23_A Anti-cleavage anti-GREA 22.1 3E+02 0.01 22.8 7.6 25 285-309 48-72 (156)
293 2w6b_A RHO guanine nucleotide 21.8 2.4E+02 0.0082 20.6 7.0 21 259-279 14-34 (56)
294 1a93_B MAX protein, coiled coi 21.6 1.4E+02 0.0048 19.8 4.1 21 259-279 11-31 (34)
295 1x8y_A Lamin A/C; structural p 21.3 2.8E+02 0.0094 21.1 8.7 23 279-301 31-53 (86)
296 3iv1_A Tumor susceptibility ge 21.2 2.9E+02 0.0098 21.3 10.5 54 251-304 21-74 (78)
297 2yko_A LINE-1 ORF1P; RNA-bindi 21.0 1.9E+02 0.0063 26.6 6.4 28 260-287 4-31 (233)
298 3q4f_C DNA repair protein XRCC 21.0 77 0.0026 28.3 3.7 26 255-280 161-186 (186)
299 2ocy_A RAB guanine nucleotide 20.8 4E+02 0.014 22.9 12.6 32 278-309 103-134 (154)
300 3s84_A Apolipoprotein A-IV; fo 20.4 4.2E+02 0.014 24.2 8.8 69 235-306 151-225 (273)
301 2l5g_B Putative uncharacterize 20.2 1.9E+02 0.0065 20.0 4.8 30 259-288 6-35 (42)
302 4e61_A Protein BIM1; EB1-like 20.2 2E+02 0.0069 23.4 5.8 34 271-304 6-39 (106)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.52 E-value=1.6e-14 Score=106.47 Aligned_cols=53 Identities=34% Similarity=0.596 Sum_probs=49.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
||.+|+++||+||++||.||++|+++||.+|..|+.||..|..++..|++.|.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999999999999999998887653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.27 E-value=1.8e-11 Score=92.04 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
+||.+|+++||++|++||.||++++.+|+.+|..|+.+|..|..++..|..++..+
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999987655554443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.20 E-value=6.1e-11 Score=88.34 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=47.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
||.+|+++||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..++
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999998887555443
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.18 E-value=3.8e-11 Score=90.66 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=42.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
..+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|++++.
T Consensus 14 R~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 14 RARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345999999999999999999999999999999999999988877653
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.12 E-value=1.3e-10 Score=86.87 Aligned_cols=52 Identities=29% Similarity=0.429 Sum_probs=46.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
|+.||+.+||++|++||.||++++.+|+.+|..|+.+|..|..++..|..++
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999998887655443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.99 E-value=1.3e-09 Score=84.16 Aligned_cols=60 Identities=37% Similarity=0.421 Sum_probs=47.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (327)
Q Consensus 236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (327)
.||+..||.++|.+|.||++||.+||.+|..|+.++..|..++..|..++..|..||..|
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 588899999999999999999999999999999988876655555555555555555444
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.85 E-value=5.4e-09 Score=78.70 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=40.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
|+.+++.+||.+|+|+|.||++++.+|+.++..|+.+|..|..++..|..
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999988875443
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.49 E-value=6.6e-07 Score=70.25 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
.+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|..++..
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557799999999999999999999999999999999999998765544433
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.47 E-value=8.7e-07 Score=70.91 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
.+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|.
T Consensus 14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677999999999999999999999999999999999999887543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.44 E-value=9.2e-09 Score=85.21 Aligned_cols=45 Identities=33% Similarity=0.427 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 275 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~ 275 (327)
.+.|.+||.+|||.+|+.||.||.+++.+||.++..|..+...|.
T Consensus 34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999977666555444433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.18 E-value=1.1e-05 Score=65.09 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
...|..||.++||.+|+-+|.||.....+||.++..|..+...|..++..+.
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999988888777776666655444
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.15 E-value=0.001 Score=46.48 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
|+|+.+||.++..|+..|++|..++. .+..||..||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHh
Confidence 58999999999999998888876665 6778999998755
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.98 E-value=0.067 Score=42.24 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIR 312 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r 312 (327)
+.-|.-+|+.|+.+|..|..++..++.....+..+|..|+.+....+.+|...+.+
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777777777777777777778899999999999999888776544
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.93 E-value=0.0035 Score=50.44 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQAHLNELET 262 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~ 262 (327)
...|..||..+||.+|+++|+||...+++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 45788999999999999999999999888764
No 15
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=95.40 E-value=0.058 Score=39.25 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
.+.|-.||+.|+.||..|+++|.+-..++..++.|-.-+|.-+..|..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 467889999999999999999999999999999888877776665554
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.53 E-value=0.25 Score=42.05 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+...+.|+.+++.+..|...|+.++..++.++..+..++..|+.++..|+.++..
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777777777777777777777777766554
No 17
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.24 E-value=0.19 Score=37.72 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lka 297 (327)
|..-|.+|.+|..-|..|..++..++.+++.+..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 55668899999999999999999999999999999999974
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.71 E-value=0.59 Score=36.83 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.-++.||.+|.++-....-|.-++.+|+++...+..+|..++...+.|+...
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en 57 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELEREN 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4578899999999998888888999999998888888888666555555443
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.18 E-value=0.46 Score=38.86 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLK-------GLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~-------~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
..-+||.+++.|+.||..|+. ++..|..++..|..||..|+++-+..+
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344677888888777777766 555666666666666666665554443
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.48 E-value=4 Score=33.76 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIR 312 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r 312 (327)
.+..|+.++..|+..|..|...+.+|.+....++..+|..-.-++.+..|+..+|.|
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999888655
No 21
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=91.50 E-value=0.97 Score=36.86 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
.+..|..+|+.|+.||..|++++..|.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777665443
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.44 E-value=1.9 Score=36.53 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+.+++++.++..|..+...+..++..+.+++..+..+|..|+.++..|.+.+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555544
No 23
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.31 E-value=0.22 Score=33.12 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
|..||.+|+.|..+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567888888888888888888776653
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.29 E-value=4.9 Score=36.00 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIR 312 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r 312 (327)
+..|+.++..|+..+..|..++..|.+....++...|.+..-++.+..|+..+|.|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr 145 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888888889999999888888654
No 25
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.07 E-value=1.4 Score=35.73 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..+..|+.++.....+...|..++..-+.+...++.++..+.++++.|.+.|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788888888888888888888888888888888888888888776
No 26
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=90.80 E-value=0.41 Score=32.35 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
++..||.+|+.|..+|..|..++..|+..+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 578899999999888888888887766544
No 27
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=90.74 E-value=0.32 Score=32.52 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
++..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467888888888888887777776554
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.83 E-value=2.7 Score=46.10 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLT----DVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~----~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
+.+++|+.++..+..|...|..++. +|+++...+..||..|++++..|...+.
T Consensus 991 ~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443332 3445666778888888888888885443
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.36 E-value=6.8 Score=34.06 Aligned_cols=71 Identities=15% Similarity=0.026 Sum_probs=46.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
..+.+.+.+..-++--......+.+-..-++.|+.|...|.-++..+..+...+..||..|-.+...-..+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~q 139 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEK 139 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333444555555566788888888888888888888888888888877666554433
No 30
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=88.48 E-value=0.61 Score=31.16 Aligned_cols=28 Identities=4% Similarity=0.077 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5678888888888888888777766553
No 31
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=88.48 E-value=2.5 Score=31.22 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 275 (327)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~ 275 (327)
.-+||.++|++|.|=+..|+....-...-..||..|+
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 3579999999999988877766655555455665554
No 32
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=88.45 E-value=0.56 Score=31.71 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
++..||.+|+.|..+|..|..++..|+.-+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467899999999999988888887766544
No 33
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=88.26 E-value=2.9 Score=33.08 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020381 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQ 315 (327)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~ 315 (327)
..-.||..|..++..+..++..+..+|..|+.=...-+ .+...++|+||
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q-~la~~i~~L~~ 83 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ-YMAEVIERLSN 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcC
Confidence 33457888888888888888888888887764333222 12222677765
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.23 E-value=3.7 Score=40.50 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 284 KYDESAVNNRILKADIETL 302 (327)
Q Consensus 284 k~~~l~~EN~~Lkaql~~L 302 (327)
+...+..||..+++++.+|
T Consensus 559 ~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 35
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=87.94 E-value=0.87 Score=29.27 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 282 NQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 282 ~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+.-+..++.||..||+.+++|-+||
T Consensus 5 nallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345678889999999999988876
No 36
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=87.67 E-value=2.2 Score=29.88 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.+..||.+|..|+.||..|+++.-.-+.-+. -|..++..||.|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdlia-------ylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIA-------YLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHH-------HHHHHHHHHHHHh
Confidence 3567899999999999998876632222222 2456666666654
No 37
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=87.66 E-value=2.9 Score=37.99 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020381 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQLS 317 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~ 317 (327)
.-.||..|..++..+..++..+..+|..|+.=++.++....+ +++++|-.
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~v-i~~l~~~~ 162 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAEL-IERLNGEP 162 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC
Confidence 345888899999888888888888888888766666554433 77877654
No 38
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.59 E-value=3.1 Score=32.03 Aligned_cols=50 Identities=12% Similarity=0.275 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
.++..++..++.+|..|..++..+++.+..-..+-..++.++..+-..+-
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778888999999999999999999988888777777777776665443
No 39
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=87.45 E-value=1.8 Score=31.03 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lka 297 (327)
|.++..|+.-|..|..++..|...|..++.|+.+|++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5778889999999999999998888888776666554
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=87.08 E-value=0.84 Score=30.33 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567888888888888888777766553
No 41
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.02 E-value=1.4 Score=33.63 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
|..++..|......+..||..|+.++..|+..+.
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555677788888888887777664
No 42
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.84 E-value=4.6 Score=35.14 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+.+|+..+..-...+..|..++..|+-++..++...+.|+++...|-.+|
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444444444444
No 43
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=86.84 E-value=0.8 Score=30.63 Aligned_cols=28 Identities=7% Similarity=0.285 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999998888888876654
No 44
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=86.61 E-value=0.83 Score=30.54 Aligned_cols=28 Identities=7% Similarity=0.306 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5678889999888888888888776654
No 45
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=86.34 E-value=0.88 Score=30.41 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678888999888888888877776653
No 46
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.92 E-value=3.9 Score=34.30 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..|+.+..+-+...++|..+|..|+++++.+..|=..||.+.+.|..++..
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 344444444444566666777777777777777777777777766666543
No 47
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=85.84 E-value=2 Score=33.62 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.+++..++..++.+|+.|..++..+++.+..-..+-..++.++..+-..|
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888888888888777777777776666444
No 48
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=85.35 E-value=2.3 Score=31.41 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lka 297 (327)
-|.++..|+.-|-.|..++..|..+|...+.|+.+|.+
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888877766666554
No 49
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=85.22 E-value=1.2 Score=29.60 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678899999888888888877776553
No 50
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=85.19 E-value=0.08 Score=42.56 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRKQA 255 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RKk~ 255 (327)
...|..||..|||.+||++|+||..
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3578889999999999999999854
No 51
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.08 E-value=4.4 Score=33.08 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (327)
-..+.+|+.+|..|+.||+.|+.+.....++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4678999999999999999999888766554
No 52
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=84.66 E-value=6.9 Score=30.59 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
-+.+|..+++.|+.|...|+.+++.+..++..+....+.+-.++..+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777777766666665555433
No 53
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.45 E-value=5 Score=33.63 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
+|+.|+.|+..|..+|.++..++..+..+|..|..++.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 45555555556666666666666666666666655543
No 54
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=84.25 E-value=0.94 Score=41.78 Aligned_cols=57 Identities=25% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQ-------AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk-------~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
+.||.+|.++-=.==-|.|.-|. ++.+++..++++|+.||+.+..++..++.+..+.
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~ 181 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDED 181 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC---------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37899998776443444444443 4444555555555555555555555555444433
No 55
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.14 E-value=9.8 Score=31.17 Aligned_cols=9 Identities=33% Similarity=0.696 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 020381 295 LKADIETLR 303 (327)
Q Consensus 295 Lkaql~~Lr 303 (327)
|..+++.|+
T Consensus 88 LE~~iesL~ 96 (119)
T 3ol1_A 88 LERKVESLQ 96 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344443
No 56
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=83.56 E-value=5 Score=28.89 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
.+.+|..++..|...|..|...|...++++.. |+.+|+.|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~-------Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLA-------LREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHh
Confidence 34456666666666666666666555544444 45555544
No 57
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.44 E-value=15 Score=29.17 Aligned_cols=9 Identities=11% Similarity=0.623 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 020381 298 DIETLRAKV 306 (327)
Q Consensus 298 ql~~Lrakv 306 (327)
++..|.+||
T Consensus 87 ev~~L~Rri 95 (101)
T 3u1c_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444333
No 58
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.07 E-value=3.3 Score=31.95 Aligned_cols=47 Identities=28% Similarity=0.213 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
++|.+||.++..++.-...|...+..-.+++..+..+-+.|..++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666666666665555555544444444443333
No 59
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.03 E-value=4 Score=39.86 Aligned_cols=53 Identities=15% Similarity=0.299 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
.++.+.+|+.++..|+.+...+..++.++.+++...+..-+.|--++.+|+..
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566677777777777777777777777777777766666666666666543
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.32 E-value=1.6 Score=33.33 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLL 275 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~ 275 (327)
.||..|+.++..|+.+...|.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 61
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=82.21 E-value=6.7 Score=30.70 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
.-.||..|..++..+...+..+..||+.|+.=+...+.
T Consensus 32 aL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~ 69 (79)
T 2zxx_A 32 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999999999999999765555543
No 62
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=81.84 E-value=5.2 Score=31.00 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++||.+|+.|+.--..|..+++.|..+|... ...||+++..|..+|+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccc
Confidence 4678888888877777777777766555543 567899999999988875
No 63
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=81.82 E-value=6.2 Score=27.92 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
+||.+|+.|+.--..|..+++.|-.+|... ...||+++..|..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 577777777777777777776665554433 45677777777654
No 64
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.61 E-value=17 Score=28.31 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.....+|+.+...|..+...|..++.++...+..+......|..++..|.++|
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457788888888888888888888889999999888888888888888876
No 65
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.47 E-value=15 Score=32.40 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
+....+..-=+.=|+.|.+-.+.+.+|+.+|..|+.|...++. .+..+.++|+.|...+..|..
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~-------~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH-------NLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556677777777777777777666655555444 445667777777777666664
No 66
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.43 E-value=2.5 Score=30.51 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020381 262 TQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L 281 (327)
..|+.|+.||+.|+.++..|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45666666666555555433
No 67
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=81.33 E-value=2 Score=31.89 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.++..|..++..|..+|..|+.++..|+..|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888888888888887655
No 68
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=81.26 E-value=10 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 277 GLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.+..|..++..+..+|..|+.++..|+..+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777777777766554
No 69
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.24 E-value=4.3 Score=31.33 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.+|+.++..|+...+.+-..+..|+..+..-..+-..|+.++..|..|++..
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688899999999988888888888888887777777777777777776653
No 70
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=81.18 E-value=1.7 Score=40.53 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lk 296 (327)
...+.+|+.++..|...|..|...+..+++++..+..|+..|+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446677777777777777777777666655555544444443
No 71
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=80.92 E-value=5.9 Score=32.79 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTD-------------VNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~-------------L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.-+++|..++..|+-||..|++++.. -+.+..-...-|+--.+-..++++||...
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe~kVr~~ 75 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSR 75 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999863 12222333344444455566677777654
No 72
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=80.57 E-value=9.5 Score=29.74 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l-------~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
.+-.+|+.|-.||.+|...- .+|..++..+.+|+..|+.++..++..
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566777777777766543 356678888888888888888887743
No 73
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=80.36 E-value=3.1 Score=30.01 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 270 EHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
+...|+.++.+|+.++..|..+|..|++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444444443
No 74
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.15 E-value=13 Score=29.34 Aligned_cols=27 Identities=7% Similarity=0.273 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 278 LTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
+..|+.++..+..+|..|..++..|++
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 75
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.07 E-value=16 Score=32.18 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 250 R~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
|.||++ .+|...+..++..+..|..++..|......|..+...|.+++
T Consensus 31 rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 31 RLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444543 444444455544444444444444444444444444443333
No 76
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=79.90 E-value=3.5 Score=28.73 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l 278 (327)
.....+||.+|..|+.||+.|++-+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3456889999999999999887654
No 77
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.77 E-value=6.3 Score=28.97 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 277 GLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+...|..++..|..+|..|+.++..|+..+..
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554443
No 78
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=78.99 E-value=18 Score=27.95 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=28.1
Q ss_pred HHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 234 KRARRMLSNRESARRSRRRK---QAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 234 KR~RR~lsNRESArRSR~RK---k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
||.|=-+.=|.|-...|.|- +..+.+|+.+-..|+.+...|..++..|.+-+
T Consensus 19 rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 19 RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443344333433333332 34566666666667777777766666665443
No 79
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=78.92 E-value=19 Score=27.86 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
-...+..+...+..|+.+...++..+....+.|+.+..=--.|..+|.+.|.-|-
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3456677788888888888888888888888898888888888899998887653
No 80
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=78.80 E-value=21 Score=28.71 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=55.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 240 LSNRESARRSRRRKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYF 310 (327)
Q Consensus 240 lsNRESArRSR~RKk~~l~eLE~qV~~L~---~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av 310 (327)
..|-.+|-..=..|+..+++|...+.+++ ..+..|..++.....-|..-...-..|..+.+.|...|..+.
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34556777777789999999999888888 667778899988888888887777777777777777766653
No 81
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=78.72 E-value=4.2 Score=26.45 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQK 284 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (327)
+..||.+|.+.+.||-.|..++..|..+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3456666666666666665555554443
No 82
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=78.54 E-value=5.6 Score=39.07 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
..+.+|+.++++|+.++..+..++..+.+++...+.+.+.|--+++.|+.
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34556666666666666666666666666666666666666666666553
No 83
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=78.19 E-value=3.4 Score=27.57 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 278 LTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
...|..++..+..+|..|..++..|+.-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566777788888888888888888765
No 84
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=78.17 E-value=8.8 Score=29.61 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
.+|.+-+.++..|+...+-=.+-.+.|+-++-.+..||..|+.++..|.+
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34455555566666555555555667777778899999999999887764
No 85
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=78.10 E-value=2.1 Score=30.87 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..+.+|..++..|..||..|+.++..|+..|
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888889999999999999998654
No 86
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=77.77 E-value=4.3 Score=31.29 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
.||..|+.+...|..|+..|..++..|.+++
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555555554444433
No 87
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.61 E-value=39 Score=30.17 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
....+..|+.+...|+.....+..++..++..|.-|......+...+...
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 33445555555555555555555555555555555555555555554443
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.42 E-value=23 Score=34.79 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.++.+.+.++.+++.+.+++...++++..+..|...|+.+++..+.++
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 333344444444444444444444555544444444444444444333
No 89
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=77.19 E-value=3.4 Score=27.63 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678888888888888888877776653
No 90
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=77.16 E-value=9.5 Score=27.71 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.++...+..|+.+.+.++..+....+.|+.+..=--.|-.+|.+.|.-|
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566777777777777888888778888888877778888888888655
No 91
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=77.07 E-value=1.4 Score=34.29 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 272 SSLLKGLTDVNQKYDESAVNNRILKA 297 (327)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lka 297 (327)
..|+.++.+|..+...|+.||..||.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666667776665
No 92
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=76.76 E-value=19 Score=29.91 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 250 R~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
...-+.++..|+.+|..|+.|. ..-+...+.+..||..|+.+++.|+.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL-------~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADL-------AEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666655554 44445567788999999999998853
No 93
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.56 E-value=16 Score=29.83 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRRK-Q-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~RK-k-~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.++|=.+-|++| ||-=-.|- . =.++-|...++.++.....|.+++.+..+.+..+......|+.++..|+..|+.
T Consensus 7 vEEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 7 VEEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp -CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666678887 22211111 0 123444455555555555555555555555556666666666666666665543
No 94
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.48 E-value=8.5 Score=46.97 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQL 316 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~ 316 (327)
+.++..++.+.+.|..++..|+.+|..+..|-..|+.+++..+.||..|-+.+.|+
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555666667777777777777788888888888887777774444443
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.31 E-value=21 Score=34.46 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFI 311 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~ 311 (327)
++.+......++..+.++.+.+.-+...+..++..-++++++++.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 333344444444444444444444555555555555566666543
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.30 E-value=33 Score=33.07 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 250 R~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
|.|.+++++....++++|+.||+.|...+.++..++..
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 430 QNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 33444445555555555555555555555444444333
No 97
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=76.30 E-value=15 Score=25.71 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 281 VNQKYDESAVNNRILKAD 298 (327)
Q Consensus 281 L~qk~~~l~~EN~~Lkaq 298 (327)
|..+...++.||..|+..
T Consensus 8 lenevaslenenetlkkk 25 (49)
T 3he5_A 8 LENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHh
Confidence 344445566666666544
No 98
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=76.09 E-value=26 Score=27.47 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 242 NRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
|-.||=.+=.|-|+- +..++...+..|..+.++|.+...++..|..|=+.|+.++..|+
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555543 34456677777777777776555555555555444554444444
No 99
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.03 E-value=14 Score=28.51 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDV------NQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L------~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+..++.|+.+|..|+.+...|..++.+- -.++..+..+-..|..+++.+-.++-.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999888742 245566666666666777666666644
No 100
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=75.52 E-value=24 Score=26.76 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..++.++.++...+..+..+..++..|+.++..++.+=..+..++.....+|..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555555555555543
No 101
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.07 E-value=6.3 Score=28.65 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..+..|..++..+..+|..|+.++..|+..+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777766544
No 102
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=74.40 E-value=3.5 Score=38.48 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+.++..|+.++..|..++..|...+..+..|...||.+++.|+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666666666666555555555555554
No 103
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=74.32 E-value=20 Score=29.43 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaq 298 (327)
+.....|.+|+.|+.++.+|+.++.....-..++..+|..|+.+
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~ 54 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIK 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 44555666788888888888888877766666666666666543
No 104
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=73.92 E-value=25 Score=27.98 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 246 ARRSRRRKQAHLNELE----TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 246 ArRSR~RKk~~l~eLE----~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.+|-+.|-.-|...=. .++..|+.++..|..++. .+..||..+..++..++.++
T Consensus 28 q~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~-------~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVE-------QLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3455666666654433 234556666666655555 44555555555555555554
No 105
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.85 E-value=22 Score=28.01 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
..+.+|+.+-..|+.+...|..++..|.+-+.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666665554443
No 106
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=73.84 E-value=22 Score=27.17 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
+.+...+..|+.+.+.++..+....+.|+.+..=--.|..+|.+.|..|-
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666666666677777787777778888888886653
No 107
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=73.83 E-value=31 Score=27.19 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E 291 (327)
+.++.++..++.++..+-.++..|+.++..+..+
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333
No 108
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.81 E-value=12 Score=32.40 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+..|+.++.....+...|..++..-..+...++.++..+.++++.|.+.|
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555555555555555444
No 109
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=73.56 E-value=30 Score=26.91 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+|=++.+..-..+++.|+.-...|..--..|..-+..+..|-..|...++.|+.|...
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556666666777776666777666666667777777777788888888877665
No 110
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=73.53 E-value=12 Score=29.12 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
=+..|+.|..+|..|+..+..+..++..+.++-..+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444433
No 111
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=73.17 E-value=3.7 Score=27.26 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..|..++..+..+|..|..++..|+..|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566777888889999999999888765
No 112
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=73.15 E-value=5.8 Score=35.68 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
+|+.-..-|..|..||..|..++.. ...|+..|+.+++.|+..
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~-------k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDT-------KATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 3344444455555555555555543 334444444444444433
No 113
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=72.92 E-value=6.8 Score=26.51 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 268 RAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (327)
Q Consensus 268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lk 296 (327)
-.||..|.+.++.-.+++..+..+|..|+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46889999999988888889888888875
No 114
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.88 E-value=25 Score=38.55 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 286 DESAVNNRILKADIETLRA 304 (327)
Q Consensus 286 ~~l~~EN~~Lkaql~~Lra 304 (327)
..+..+...|+.++..|..
T Consensus 916 ~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 115
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.56 E-value=39 Score=27.86 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=49.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 241 SNRESARRSRRRKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 241 sNRESArRSR~RKk~~l~eLE~qV~~L~~---EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|=.+|...=..|+..+++|..++.+++. ...-|..++......|..-...-..|..+.+.|...|..+
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 34456666667788888888888888877 6667888888888777766666666666666666655543
No 116
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=72.45 E-value=3.7 Score=29.74 Aligned_cols=29 Identities=7% Similarity=0.192 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
++|+.+...++.|..||..|..++..+++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666655543
No 117
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.32 E-value=29 Score=38.09 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=7.0
Q ss_pred chhHHHHHHhhhh
Q 020381 35 SEWELEKFLQEVT 47 (327)
Q Consensus 35 SEW~FqkfLeE~~ 47 (327)
.-|.|+.|++--.
T Consensus 700 ~R~~~~eF~~RY~ 712 (1080)
T 2dfs_A 700 SRWTYQEFFSRYR 712 (1080)
T ss_dssp EEEEHHHHHHHHT
T ss_pred chhhHHHHHHHHH
Confidence 3455666665543
No 118
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=72.30 E-value=28 Score=28.68 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
..=+.|+-+||..-..|+........-|.++..+|..+.-.|..|..++.
T Consensus 52 ~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 52 EQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555444555555555555555555555554443
No 119
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.27 E-value=26 Score=35.98 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 273 ~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.|++++..|+.++......=++|+..|+.++.+++.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776666666677777777777777666
No 120
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.77 E-value=22 Score=27.04 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..++..++.+......+...+...+..+...+..|..++.....+|..+
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555555555555555555554444
No 121
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.67 E-value=57 Score=29.34 Aligned_cols=24 Identities=4% Similarity=0.167 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
..|..+++.++.++..|..++..+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333333
No 122
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.63 E-value=16 Score=29.89 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql 299 (327)
|+++|..+.+++.|+....+++..++..+..+..+-..|+.++
T Consensus 39 LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 39 LLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 123
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.18 E-value=4.3 Score=31.59 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLK 276 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~ 276 (327)
.+|.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888777654
No 124
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=71.05 E-value=26 Score=27.58 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (327)
Q Consensus 268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lka 297 (327)
-.||..|..++..+..+...+..+|..|+.
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776655555555555555443
No 125
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.82 E-value=38 Score=26.88 Aligned_cols=53 Identities=4% Similarity=0.127 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..+.++.++..++.++..+-.++..|+.++..+..+=..+..++.....++..
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555444444444444444444433
No 126
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=70.78 E-value=16 Score=32.84 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~ 293 (327)
+..|..++..|..++.....++..|++++..+..+-+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4445554444444444444444444444444443333
No 127
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=70.50 E-value=19 Score=25.87 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 287 ESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 287 ~l~~EN~~Lkaql~~Lrakv~ 307 (327)
.|..--+.-+.+|..|+..|.
T Consensus 27 rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 27 KLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444566666665543
No 128
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=69.68 E-value=12 Score=29.03 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020381 287 ESAVNNRILKADIETLR 303 (327)
Q Consensus 287 ~l~~EN~~Lkaql~~Lr 303 (327)
.+..+|..|+.++..|+
T Consensus 70 ~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 70 LLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555666655553
No 129
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=69.64 E-value=7.1 Score=29.93 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=15.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 239 MLSNRESARRSRRRKQAHLNELETQAGQ 266 (327)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~ 266 (327)
+...-..-|+-|.+=...+.+|..-|-.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~ 34 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVG 34 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccC
Confidence 3344445555555555666666665543
No 130
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=69.49 E-value=48 Score=27.61 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 275 LKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 275 ~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
..++..+..++..+..+-..|..++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (284)
T 1c1g_A 229 SDKLKEAETRAEFAERSVTKLEKSIDDL 256 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 131
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=68.87 E-value=6.7 Score=26.64 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 272 SSLLKGLTDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
+.|..++.....+...++.+|+.|..++..
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666667778888888888877653
No 132
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.61 E-value=28 Score=31.45 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDV 281 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L 281 (327)
..+.+++.++..++.+...+..++...
T Consensus 53 ~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 53 EEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333333333
No 133
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=68.52 E-value=26 Score=32.32 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 020381 233 DKRARRMLSNRESA-RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR-AKVTYY 309 (327)
Q Consensus 233 ~KR~RR~lsNRESA-rRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr-akv~~a 309 (327)
-|-.=.-|+|||.. +.+|.||+.-. .++..|+... --..++..|++++..++.+|-+..+++..+. .+++.+
T Consensus 92 yR~~LK~IR~~E~svqp~R~~R~~l~----~~I~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa 165 (234)
T 3plt_A 92 YRVTLKSIRNIEASVQPSRDRKEKIT----DEIAHLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAA 165 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHH
Confidence 34444567888866 55666665433 3334444321 2246788889999999999988888887765 444554
No 134
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=67.75 E-value=39 Score=25.86 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.|-...+.++...+..|+.+...++..+....+.|+.+..=--.|-.+|.+.|.-|
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33445677788888888888888888888888888888877778888888887654
No 135
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=67.39 E-value=25 Score=27.59 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAG---QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 258 ~eLE~qV~---~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..|+.+|. .+..|-...+..+-.+..++......|+.|..+++.|+.++..
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 3455556666666677778888888899998888888888776
No 136
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=67.29 E-value=8.1 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 280 DVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 280 ~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
..++.+.++..+|..|..++..|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 33333444555555555555443
No 137
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=66.77 E-value=11 Score=29.40 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..|..++.+|..+...+..|+..+++-...++.+++.
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544443
No 138
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=66.33 E-value=9.6 Score=25.39 Aligned_cols=29 Identities=3% Similarity=0.035 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 278 LTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
...|..++..+..+|..|..++..|+.-|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566677778888888888888887765
No 139
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=65.93 E-value=8.4 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQK 284 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (327)
+.|..-+..|+.||..|+.++++|-.+
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666788888998888888776544
No 140
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.74 E-value=22 Score=27.26 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLT 279 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~ 279 (327)
|...+.+|+.++.....+...|+.++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555555553
No 141
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=65.53 E-value=8.3 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.310 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 278 LTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+..|..+...++.||-.|.+++..|...+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 34455666788899999999999887653
No 142
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=65.51 E-value=3.8 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020381 266 QLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 266 ~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
.|+.||..|.+++..|+|++..
T Consensus 4 alefendaleqkiaalkqkias 25 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHH
Confidence 4555555555555555554443
No 143
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=65.49 E-value=12 Score=25.29 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..|..+...|..+|..|..++..|+..+..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 345555666677777777888777776643
No 144
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=65.37 E-value=5.3 Score=28.89 Aligned_cols=29 Identities=21% Similarity=0.404 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 278 LTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
|..+...+..+..||..|+.++..|..+|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556777888889999999988887664
No 145
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.28 E-value=37 Score=24.67 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..+..|..++..+..+|..|+.++..|+..+..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778888888888888888888877665
No 146
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=65.08 E-value=49 Score=26.02 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 020381 297 ADIETLRAKVT 307 (327)
Q Consensus 297 aql~~Lrakv~ 307 (327)
.++..|.+||.
T Consensus 86 ~evasLnRriq 96 (101)
T 3u59_A 86 AEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555544
No 147
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=64.92 E-value=11 Score=25.03 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..|..++..+..+|..|..++..|+.-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456677778888888888888888765
No 148
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=63.92 E-value=12 Score=24.30 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 280 DVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 280 ~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.|+.+.+.+...|-.-++.+++||.|+
T Consensus 5 alkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 5 ALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445566677777788888888776
No 149
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.73 E-value=26 Score=29.84 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
++..|...+.....+...|..++..-+.+...++.++..+.++++.|.+.|-
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF 84 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 84 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677788888888888888888888999999999999999998773
No 150
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=63.64 E-value=3.4 Score=37.90 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 020381 267 LRAEHSSLLKGLTDVNQ---KYDESAVNNRILKAD 298 (327)
Q Consensus 267 L~~EN~~L~~~l~~L~q---k~~~l~~EN~~Lkaq 298 (327)
|..||+.|++++..|++ ++..+..||..|+.-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544432 333455566655543
No 151
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=63.15 E-value=34 Score=24.12 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
.++.+++.++..++.+-..+..++..+.+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~ 44 (60)
T 3htk_A 12 NQVEELTEKCSLKTDEFLKAKEKINEIFEKLNT 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333333333
No 152
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.62 E-value=13 Score=30.18 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.++..|++++..|..||..|+.++..|..+|-.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888888888888888888887744
No 153
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.17 E-value=30 Score=35.60 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=18.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 270 EHSSLLKGLT-DVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 270 EN~~L~~~l~-~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+|.....++. +|++++..|..+=..-.++|..||..|...
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444 555555444322111116666666665555
No 154
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=61.42 E-value=27 Score=30.58 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020381 283 QKYDESAVNNRILKADIETLRAKVTYYFIRIIQLS 317 (327)
Q Consensus 283 qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~~ 317 (327)
.++..+..|-..|++++...|.+....++.. |+.
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke-Gip 146 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVKRDVAMAQA-GIP 146 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 4556666777777888888887766665444 443
No 155
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.37 E-value=69 Score=26.20 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
..+...+..|+.+...++..+....+.|+.|..=--.|..+|.+.|.
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555554445555544444444455554443
No 156
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.75 E-value=83 Score=30.03 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
+++..-..++++++.|=..|.++++.+++.|+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445555555555555555555544
No 157
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.42 E-value=66 Score=30.75 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 292 NRILKADIETLRAKVTYY 309 (327)
Q Consensus 292 N~~Lkaql~~Lrakv~~a 309 (327)
=..|..++.+|.++|+.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555554
No 158
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=57.87 E-value=63 Score=24.97 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSL-------LKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L-------~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.+|..++..+..+|..| ...+.+++.+|..-..--..+..++..|+.-|-.+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444444444444443 34444555666555555555555555665444433
No 159
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=57.87 E-value=71 Score=26.73 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
.+|+.++..|+..|..|..++..+..++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888888888887777555
No 160
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=57.64 E-value=53 Score=24.05 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
|..-+.+||.++..++.--..+..++..+.-.+..+..++..=+..++.|..|+..
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~ 59 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVE 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34556777877777776655565566555555555544444445667777776654
No 161
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.60 E-value=70 Score=26.07 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
..|+.++..|+..+..|...+.++.+++
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444444555544444444433
No 162
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=57.53 E-value=82 Score=27.59 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
...++...++.|..+ |..|+.++..|..
T Consensus 184 ae~el~~ak~~ye~l---n~~L~~eLp~l~~ 211 (251)
T 2fic_A 184 AEEELIKAQKVFEEM---NVDLQEELPSLWN 211 (251)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 444555566666544 7788888777753
No 163
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.98 E-value=33 Score=33.35 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
.+..|+.++..|+.+..+|..++..++.++..+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766666665555543
No 164
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.86 E-value=67 Score=24.93 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
..+..|+.+++.-+.+-..++.++..+.+.+..-..|=..|+..+..|
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 345555555555555555566666666666555555555555555443
No 165
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=56.55 E-value=52 Score=23.61 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (327)
.+++|..+|..|..+...|...+..++..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544444433
No 166
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.29 E-value=1.1e+02 Score=37.73 Aligned_cols=72 Identities=10% Similarity=0.192 Sum_probs=45.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 020381 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK--------------YDESAVNNRILKADIETLR 303 (327)
Q Consensus 238 R~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk--------------~~~l~~EN~~Lkaql~~Lr 303 (327)
...++-+.|+..-..+++.|.+|+.+++.|+.+-+.+..+-..|+.+ +..|..|+.+-..++..|.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 45555566666667777888888888887777655544444333332 2345567766677777776
Q ss_pred HHHHHH
Q 020381 304 AKVTYY 309 (327)
Q Consensus 304 akv~~a 309 (327)
......
T Consensus 2098 ~~~~~L 2103 (3245)
T 3vkg_A 2098 TQMSTV 2103 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 655444
No 167
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=55.76 E-value=36 Score=25.64 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 020381 255 AHLNELETQ 263 (327)
Q Consensus 255 ~~l~eLE~q 263 (327)
..+.+|..-
T Consensus 19 ~~f~~Lr~l 27 (83)
T 1nkp_B 19 DSFHSLRDS 27 (83)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 334444433
No 168
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=55.19 E-value=29 Score=31.65 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
.=.|.|++.|+.+|..|..+++.|. ....+|..+-.++..|.-+|..+
T Consensus 68 SL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~LL~a 115 (252)
T 3e98_A 68 SLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDLLDA 115 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445667777777777777776554 55677888877777777666654
No 169
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=54.81 E-value=18 Score=32.23 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
..+.+|..++.+|+.+|..|+.+.+...+++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666665554443
No 170
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.27 E-value=40 Score=33.23 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+..|.+++..|+.++..-...=++|+..|+.++.+++.+
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777666667788888888888877766
No 171
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=54.17 E-value=71 Score=24.41 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
|...|..|..|+..|..++..+.+++..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788777777777776554
No 172
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=53.98 E-value=49 Score=25.57 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 020381 255 AHLNELETQAG 265 (327)
Q Consensus 255 ~~l~eLE~qV~ 265 (327)
..+..|..-|-
T Consensus 23 ~~f~~Lr~~vP 33 (88)
T 1nkp_A 23 RSFFALRDQIP 33 (88)
T ss_dssp HHHHHHHTTCG
T ss_pred HHHHHHHHHCC
Confidence 33444443333
No 173
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=53.16 E-value=9.4 Score=27.22 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l 278 (327)
.|++.|+.++..|+.....|...|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999988888777776554
No 174
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.64 E-value=32 Score=33.66 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
..|+.|..+|.+++.++.++...+..++..|++++..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555556666666555443
No 175
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=51.56 E-value=38 Score=21.92 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
|.+++..|+.|...|+-++..|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 176
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=51.29 E-value=64 Score=23.79 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L 295 (327)
+++|...+..-..+....+.++.+|+..++.|..|-..|
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666665555555555666666666666655544433
No 177
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=51.18 E-value=23 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..|..+...+..+|..|..++..|+..|
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455566677778888888888887665
No 178
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=50.52 E-value=75 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLT 279 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~ 279 (327)
-.||..|+.++..|+.++..|..++.
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777766666554
No 179
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=50.39 E-value=74 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
+|...|..|..|+..|..++..+.+++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888887777654
No 180
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=49.92 E-value=1e+02 Score=31.19 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 272 ~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..|..++..|++++..-...=++|+..|+.++.+++.+
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888776666788888888888887776
No 181
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=49.90 E-value=17 Score=24.21 Aligned_cols=28 Identities=7% Similarity=0.249 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..|..++..+..+|..|..++..|+.-|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4556667777888888888888887654
No 182
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.67 E-value=79 Score=31.81 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQ-----------KYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~q-----------k~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|..+++.|+.+...+.+++..+.. ....+..+=+.|+.++.+|.+.+..+
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~ 142 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQL 142 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544332 22234444455555555555544443
No 183
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=48.20 E-value=1e+02 Score=24.38 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..+..+...+..|+.+...++..+....+.|+.+..=--.|..+|.+.|.-|
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777777777777777777766667777777777544
No 184
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=48.14 E-value=21 Score=23.75 Aligned_cols=28 Identities=7% Similarity=0.181 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..|..+...+..+|..|..++..|+..|
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455666777778888888887777654
No 185
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.71 E-value=25 Score=23.73 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 281 VNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 281 L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
|..+...+..+|..|..++..|+..+.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 344445555666666666666665543
No 186
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=47.54 E-value=15 Score=30.64 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 283 QKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 283 qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.++..+..+++.|+.+++.|+.++
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 187
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.26 E-value=72 Score=22.47 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
|++++..|+.....++.+...|..-+..||
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlr 37 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLR 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHH
Confidence 333333333333333333333333333333
No 188
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.00 E-value=1.1e+02 Score=24.74 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 020381 232 DDKRARRMLS 241 (327)
Q Consensus 232 e~KR~RR~ls 241 (327)
+....||.+.
T Consensus 37 Ei~elrr~iq 46 (129)
T 3tnu_B 37 EISEMNRMIQ 46 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 189
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.99 E-value=95 Score=25.60 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 020381 253 KQAHLNELETQAGQLR 268 (327)
Q Consensus 253 Kk~~l~eLE~qV~~L~ 268 (327)
=+.++..|+.++..-+
T Consensus 45 l~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 45 LKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555444443
No 190
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=46.95 E-value=73 Score=29.11 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (327)
Q Consensus 233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~ 294 (327)
....|+-+..|-.+=+ +.+..|+.++++.+.|++++..++...+++..++......
T Consensus 162 de~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 162 DSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777766665433 3567889999999999999999998877777665444333
No 191
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=46.60 E-value=39 Score=30.94 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 286 DESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 286 ~~l~~EN~~Lkaql~~Lrakv 306 (327)
.....|+..++++++..|..+
T Consensus 188 ~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 188 SRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333
No 192
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=46.57 E-value=54 Score=29.46 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=10.2
Q ss_pred CCChHHHHHHHhhhh
Q 020381 108 PVDSDEYRAYLKTKL 122 (327)
Q Consensus 108 ~~dp~~y~a~Lk~kL 122 (327)
.+..++|-+.|+.=|
T Consensus 60 ~~~~eey~~~l~~aL 74 (213)
T 1ik9_A 60 AMEKGKYVGELRKAL 74 (213)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 456678888876654
No 193
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=46.49 E-value=49 Score=25.37 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 277 GLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 277 ~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
.+.++..++.....+.+.|+.++.+++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444555555555555555544
No 194
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=46.43 E-value=16 Score=22.88 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 286 DESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 286 ~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..++-||..|.+.+.+|..|+..
T Consensus 3 dalefendaleqkiaalkqkias 25 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHH
Confidence 35678899999999998888754
No 195
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=45.07 E-value=1.2e+02 Score=25.37 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
|..+...|..+...+...+..|..++..|...|..|+..+..++
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444555555555554444444
No 196
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=44.60 E-value=1.1e+02 Score=23.91 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l 278 (327)
+.|.+|.-+|..|+.|-.....+|
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKL 49 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKL 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444333
No 197
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.41 E-value=38 Score=22.43 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 280 DVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 280 ~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
.|..+...+..+|..|..++..|+..|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344555566666777777777776544
No 198
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=44.18 E-value=98 Score=24.22 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 287 ESAVNNRILKADIETLRA 304 (327)
Q Consensus 287 ~l~~EN~~Lkaql~~Lra 304 (327)
.++..|+.|.-.+.+|..
T Consensus 60 ~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 60 KLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHH
Confidence 455555555555555543
No 199
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=43.55 E-value=1.4e+02 Score=24.63 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrak 305 (327)
.+.-|+.||.-++.. +..=+.-...+..+...|..+++.|+..
T Consensus 63 ~I~vLkaQv~IY~~D-------F~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 63 TVPVLKAQADIYKAD-------FQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 444455555554443 4333333344445555555555555544
No 200
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.48 E-value=1.8e+02 Score=25.99 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTD 280 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (327)
++..|..++..|+.++..|..++.+
T Consensus 140 ~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 140 KNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 201
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.32 E-value=32 Score=33.81 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSL 274 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L 274 (327)
+|..++..|+.+...|
T Consensus 46 dl~~~lk~le~~~~~L 61 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELL 61 (428)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 202
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.24 E-value=0.44 Score=38.22 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQ 254 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk 254 (327)
-.+..||.-+||.+|+++|+||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 46778899999999999999984
No 203
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=43.08 E-value=1.3e+02 Score=24.20 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 244 ESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
++-+-||.-=..+-++|+.-+..|+.||..=.+++.+++.++..+
T Consensus 14 e~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 14 ESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554444556777777788888887777777777766554
No 204
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=42.60 E-value=32 Score=26.30 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 282 NQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 282 ~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+++...+..++..|+.+...|+.+|
T Consensus 53 ~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 53 EDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444
No 205
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=42.36 E-value=51 Score=30.98 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN 292 (327)
.+.+++.|+.+|+.|..++++|+++...+...|
T Consensus 183 ~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n 215 (315)
T 2ve7_A 183 DAFKLESLEAKNRALNEQIARLEQERSTANKAN 215 (315)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 355677777777777777777766665555443
No 206
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=42.33 E-value=1.3e+02 Score=26.82 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (327)
Q Consensus 250 R~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~L 302 (327)
+.||.+-+.-|..++..|+.|-..|..++ ..|..|..+++++
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~-----------~~N~~lG~~vea~ 55 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEEC-----------SANDRLGQDLFAK 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHH
Confidence 36777888888889998888877776555 4455555555544
No 207
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=42.27 E-value=1.7e+02 Score=25.23 Aligned_cols=69 Identities=9% Similarity=0.022 Sum_probs=39.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
+-.|..|--.+=.+-.+..+.++.+|..|.......-.+.......+..|..+...|..++..-..+.+
T Consensus 54 v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 54 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555666666666666666666666666666666666666666555554444433
No 208
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=41.83 E-value=48 Score=27.37 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l 278 (327)
.+.+|+.+|+.++..|+.|+.-.
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF 27 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVF 27 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555554444
No 209
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=41.83 E-value=56 Score=25.63 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
+++.+.+.+...|+..|..|..++.+|.-+.
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5667778888888888888888887776554
No 210
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=41.73 E-value=2.6e+02 Score=28.04 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
.+.+|..+...++.+-..|+.+...+..++..
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555544443
No 211
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=41.34 E-value=74 Score=30.40 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l 278 (327)
||..|...+.+...|...+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l 35 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMW 35 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHH
Confidence 3333333333333333333
No 212
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=40.38 E-value=1.1e+02 Score=30.84 Aligned_cols=49 Identities=8% Similarity=0.022 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 261 ETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 261 E~qV~~L~~EN~~L~~~l~~L~q---k~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..+++.|+.+-..+.+++..+.. ....+..+=+.|+.++.+|...+..+
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444332 12345555566666666666665554
No 213
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.95 E-value=24 Score=22.13 Aligned_cols=12 Identities=42% Similarity=0.542 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 020381 292 NRILKADIETLR 303 (327)
Q Consensus 292 N~~Lkaql~~Lr 303 (327)
|..|++++.+|.
T Consensus 9 narlkqeiaale 20 (28)
T 3ra3_B 9 NARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 333444444333
No 214
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.93 E-value=25 Score=26.52 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 020381 255 AHLNELETQA 264 (327)
Q Consensus 255 ~~l~eLE~qV 264 (327)
..+.+|..-|
T Consensus 29 ~~f~~Lr~lv 38 (80)
T 1hlo_A 29 DSFHSLRDSV 38 (80)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHC
Confidence 4445554433
No 215
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=39.14 E-value=89 Score=22.96 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~ 282 (327)
..|-.+|++|+..+.+...++..|+
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555443
No 216
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.91 E-value=59 Score=24.52 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTD 280 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (327)
..|...+.+||..+..-..++..|+.++..
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888777777777766643
No 217
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=38.55 E-value=1.3e+02 Score=24.49 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 247 RRSRRRKQAHLNELE------T-QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 247 rRSR~RKk~~l~eLE------~-qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+.-|..|+.+|.+-. . ..+.|+.-..+|..++..|..+-=.++..-..-.-+|..|+.+|.++
T Consensus 20 q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 20 QTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 334445666766511 1 23346666677777777776665566666666677899999998886
No 218
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=38.40 E-value=30 Score=26.51 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 285 YDESAVNNRILKADIETL 302 (327)
Q Consensus 285 ~~~l~~EN~~Lkaql~~L 302 (327)
...|..+|..||.+|..|
T Consensus 45 narL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 45 NAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455555554443
No 219
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=38.27 E-value=77 Score=26.14 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVTYYFIRIIQL 316 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~av~r~~~~ 316 (327)
+++.+|+.++..++..|.+||+=..+-....+.+|..++|-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlGy 44 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGY 44 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 34555566666666666667655555555555555555553
No 220
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=37.65 E-value=73 Score=24.08 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lk 296 (327)
.+.+++..++..|+.|-.-...+|.++.--|+..+.++..|.
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~ 57 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVL 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 355667777777777777777777777666666555554333
No 221
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=37.63 E-value=1.8e+02 Score=29.64 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
+.++..+-..+++||..+++++...+.+|..
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666666666655543
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.63 E-value=49 Score=32.47 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLL 275 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~ 275 (327)
.|+.+++.|+.|+..|.
T Consensus 53 ~le~~~~~L~~e~e~l~ 69 (428)
T 4b4t_K 53 KLEKEYELLTLQEDYIK 69 (428)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 223
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=37.16 E-value=3.6e+02 Score=27.65 Aligned_cols=82 Identities=10% Similarity=0.074 Sum_probs=36.5
Q ss_pred hccCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 224 TIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 224 ~~~~~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
+...+++.+.|++.+-.+-|+-..+ -..-++.+|.+.+++++|...-.+-++..+++......-=..+|..+.+.-
T Consensus 287 vs~ilt~~elkqrqeee~r~~qew~----~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n 362 (551)
T 2b5u_A 287 VSDVLSPDQVKQRQDEENRRQQEWD----ATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAAN 362 (551)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCHHHHHHHHHHHHHHHHHhh----hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 3456677666655433222111110 011245556666666655554444444444433322222233455555555
Q ss_pred HHHHHH
Q 020381 304 AKVTYY 309 (327)
Q Consensus 304 akv~~a 309 (327)
..|..+
T Consensus 363 ~~~~~~ 368 (551)
T 2b5u_A 363 KTLADA 368 (551)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 555555
No 224
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.09 E-value=1.4e+02 Score=22.93 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+...+.....|+..+..|..+..+|..++..+.--...|.+.-..|..+|...
T Consensus 30 l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 30 LAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666666666666666666666666553
No 225
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=37.01 E-value=1.2e+02 Score=27.53 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 228 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 228 ~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
|.+++..-.--++-|-|-|+--| ..-+.+|+++--....+..+|+.....+..||..|+..+..|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 6 LKPEEHEDILNKLLDPELAQSER----------TEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHhcCHhhhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 34444444444555555554333 1224455556566666677777777778888888888888877
No 226
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.90 E-value=90 Score=29.81 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTD 280 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~ 280 (327)
+..|+.....+..+|..
T Consensus 28 i~~L~~~l~~~~~~i~~ 44 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTR 44 (323)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 227
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.37 E-value=19 Score=25.82 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSL 274 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L 274 (327)
..|+.+||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888887655444
No 228
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=36.30 E-value=1.5e+02 Score=23.10 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 293 RILKADIETLRAKVTYYFIRI 313 (327)
Q Consensus 293 ~~Lkaql~~Lrakv~~av~r~ 313 (327)
+.-+.++..|+.+++.+|...
T Consensus 91 Rir~~q~~~L~~kf~e~m~~y 111 (127)
T 1ez3_A 91 RIRKTQHSTLSRKFVEVMSEY 111 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888875543
No 229
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=35.83 E-value=1.6e+02 Score=24.88 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRA-EHSSLLKGLTDVN--------QKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 257 l~eLE~qV~~L~~-EN~~L~~~l~~L~--------qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++.|+.+++.|.. +-..+..++.... ..|.....+-..+..++..|..+|..+
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A 72 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENL 72 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455555555532 3344444444433 455566666677778888888877665
No 230
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=35.70 E-value=1.6e+02 Score=23.11 Aligned_cols=26 Identities=8% Similarity=0.150 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
+..|+.+...|..+|..+..+...+.
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333
No 231
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=35.58 E-value=1.3e+02 Score=26.13 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLR 268 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~ 268 (327)
++|++||.+|..|...++
T Consensus 22 ~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 22 KQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678889999888766554
No 232
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=35.42 E-value=1.2e+02 Score=21.59 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 281 VNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 281 L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
|-++...++..+..+.++++.|++
T Consensus 16 L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 16 LATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHH
Confidence 333333333333333333333333
No 233
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=34.99 E-value=1.4e+02 Score=30.37 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
.+-|..+...+.+|..+..+++.+++++....
T Consensus 30 a~Ye~~~ae~~a~n~~i~aeNeaikkrNa~ak 61 (497)
T 3iox_A 30 AAYEAAVAANNAANAALTAENTAIKKRNADAK 61 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666655555555443
No 234
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=34.95 E-value=1.1e+02 Score=21.25 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
+..|+..+..+..+...+..++..+..++..+..+=...+..+..|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554444444444444433
No 235
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=34.83 E-value=2e+02 Score=27.66 Aligned_cols=33 Identities=6% Similarity=0.307 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
|...-..|.+.+.....+|+.|..++..|.--+
T Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 217 IIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 333333445555555666777777777666444
No 236
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=32.84 E-value=93 Score=27.62 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
+++..+=..+..|+.+|..|.+++..|+++....
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888888888888777777666665543
No 237
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=32.76 E-value=2.9e+02 Score=25.22 Aligned_cols=33 Identities=3% Similarity=-0.069 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhcchhhh
Q 020381 289 AVNNRILKADIETLRAKVTYY-----FIRIIQLSIFYI 321 (327)
Q Consensus 289 ~~EN~~Lkaql~~Lrakv~~a-----v~r~~~~~~~~~ 321 (327)
..++..+.+++..+.++.... +.+.+|..+..+
T Consensus 407 ~a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~G~~~~~~ 444 (446)
T 3pik_A 407 DAERSLFATRQTLLDLNYARQVNEISLYTALGGGHHHH 444 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 455666666666666554333 567777776544
No 238
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.66 E-value=3.5e+02 Score=26.19 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY--------DESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~--------~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..+.+|..+...++.+-..|+.+...+..++ ..+..+=+.|+.++..|...+..
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALRE 89 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333332 23334444444444444444444
No 239
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=32.28 E-value=2.5e+02 Score=24.38 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhhhhHHHH
Q 020381 121 KLDLACAAV 129 (327)
Q Consensus 121 kL~~~~AAv 129 (327)
||-++.+|+
T Consensus 30 k~~la~~al 38 (175)
T 3lay_A 30 KSAIALIAL 38 (175)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 443444443
No 240
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=32.13 E-value=1e+02 Score=25.45 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
+|..+|+.|..|+..|.+++..|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777776666665544
No 241
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=31.52 E-value=79 Score=21.03 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
..|.-+...+..+|..|..++..|+.-|
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444555566666666666666666543
No 242
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=31.39 E-value=26 Score=28.99 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIE 300 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~ 300 (327)
++|..++..|..||+.||.++.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555667777777777765
No 243
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.18 E-value=2e+02 Score=23.03 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 266 QLRAEHSSLLKGLTDVN--------QKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 266 ~L~~EN~~L~~~l~~L~--------qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..+.++..+..+|.+|+ .-......+-..+..+...|+..|..
T Consensus 44 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 44 KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444555554444 33334444445556666666666544
No 244
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=30.70 E-value=72 Score=22.75 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
..||.-|..|+..|..|.+.+..|...+
T Consensus 20 aklenivarlendnanlekdianlekdi 47 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDI 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3455555555555555555555444333
No 245
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.58 E-value=48 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020381 285 YDESAVNNRILKADIETLRA 304 (327)
Q Consensus 285 ~~~l~~EN~~Lkaql~~Lra 304 (327)
+..|..++..|+.+++.|+.
T Consensus 59 I~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555543
No 246
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.51 E-value=2.2e+02 Score=23.07 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+.|+.-..+|..++..|..+-=.++..-..-.-+|..|+.+|.++
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 345556666666666666555555555555567888888888775
No 247
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=30.45 E-value=1.1e+02 Score=19.80 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQ 283 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~q 283 (327)
.||..+..|..-.++|.+++..|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677776666666666665554
No 248
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=30.08 E-value=2.4e+02 Score=23.57 Aligned_cols=53 Identities=11% Similarity=0.301 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRA-EHSSLLKGLTDVN--------QKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 257 l~eLE~qV~~L~~-EN~~L~~~l~~L~--------qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
++.|+.+++.|+. +-..+...+..+. ..|.....+-..+..++..|..+|..+
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNA 72 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555666666654 3444544554433 355556666667777888888887766
No 249
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.05 E-value=45 Score=30.51 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..++..+.+.+..+...+..||+.|+++++.|++.+...
T Consensus 143 ~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~ 181 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDED 181 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555666666667777788888888888888777654
No 250
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.93 E-value=1.7e+02 Score=28.84 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQK---YDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk---~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|..+++.|+.+...+.+++..+... ...+..+=+.|+.++..|...+..+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555443211 2344455555555555555555544
No 251
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.68 E-value=2.2e+02 Score=28.60 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 020381 293 RILKADIETLRAKVTY 308 (327)
Q Consensus 293 ~~Lkaql~~Lrakv~~ 308 (327)
+.|+..++.|+.||..
T Consensus 171 ~~L~~~~~~l~~ki~~ 186 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQK 186 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555444
No 252
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=29.45 E-value=1.9e+02 Score=22.03 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
..+..|+.+++.-+.+-..++.++..+.+.+..-..|=..|+..+..
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444444444444443
No 253
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=29.34 E-value=43 Score=27.27 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 285 YDESAVNNRILKADIETLRAK 305 (327)
Q Consensus 285 ~~~l~~EN~~Lkaql~~Lrak 305 (327)
...+..+|..|...+++|...
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~ 113 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQ 113 (118)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777666666543
No 254
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.97 E-value=2.1e+02 Score=28.73 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 292 NRILKADIETLRAKVTYY 309 (327)
Q Consensus 292 N~~Lkaql~~Lrakv~~a 309 (327)
-+.|+.++.+|...+..+
T Consensus 113 ~~~l~~~i~~le~~~~~~ 130 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQL 130 (484)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666555544
No 255
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=28.72 E-value=1.3e+02 Score=28.58 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+|++.|+.+++.|+.+...|..+++.- .........=+.|.+++..+..++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKR-PENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhC-cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555444211 011112223345667777777776664
No 256
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=28.67 E-value=2e+02 Score=25.34 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=7.9
Q ss_pred CCChHHHHHHHhh
Q 020381 108 PVDSDEYRAYLKT 120 (327)
Q Consensus 108 ~~dp~~y~a~Lk~ 120 (327)
.++.+.|=.-|++
T Consensus 63 ~me~e~Yv~el~k 75 (175)
T 3mud_A 63 AMEKGKYVGELRK 75 (175)
T ss_dssp TCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHH
Confidence 4566666666654
No 257
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=28.57 E-value=1.2e+02 Score=19.57 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKY 285 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~ 285 (327)
..|..+|..|...|-.-+.++..|+.+|
T Consensus 4 qalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455666666666666666665555544
No 258
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.37 E-value=4.6e+02 Score=26.23 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKG---LTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~---l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
+..+++|..+.+.+..+...+++. ...|..+...+..+=..|..++.++..++..
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333221 2233333444444444444444444444443
No 259
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.31 E-value=3e+02 Score=25.24 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk 284 (327)
+.+.+|+.+++.|+.+...+..++..+..+
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655554
No 260
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=28.16 E-value=2.4e+02 Score=25.25 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 250 RRRKQAHLNELETQAGQLRA-------EHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 250 R~RKk~~l~eLE~qV~~L~~-------EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
|.+|+--.+....+++.|+. .-.....++...++.|.. =|..|+.++..|-
T Consensus 139 R~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~---lN~~L~eELP~l~ 196 (243)
T 4a3a_A 139 RSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEE---FNVDLQEELPSLW 196 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34444444555555555541 111233344444444443 3677777776665
No 261
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=28.08 E-value=2.3e+02 Score=24.30 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 264 AGQLRAEHSSLLKGLTDVNQK 284 (327)
Q Consensus 264 V~~L~~EN~~L~~~l~~L~qk 284 (327)
|+.|..-.--|+++|++-+-+
T Consensus 114 Ve~LT~TiG~LrKELEdEklK 134 (167)
T 4gkw_A 114 VESLTETIGILRKELENEKLK 134 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555443333
No 262
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.62 E-value=4.5e+02 Score=25.80 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVTYY 309 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~---EN~~Lkaql~~Lrakv~~a 309 (327)
+|..+...++.+-..|+.+...+..++..+.. +-..|++++..|..+++.+
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 88 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGEL 88 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433211 1123444444444444443
No 263
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=27.62 E-value=52 Score=33.42 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
..+|+.++.+++.+.......|....+....|..+-++...+.+.|..+-..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~ 389 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNEL 389 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888777777777766667666666666666665554443
No 264
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=27.60 E-value=2.6e+02 Score=23.12 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|.-|.|+..-+ .-+.--.+|++-..++|.++++++.+...+..++ +.+-..-+.+++.++.+|.|-
T Consensus 40 ELeRLr~~~d~--~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~----------ese~~~kkK~le~~~~kV~mN 105 (115)
T 3vem_A 40 ELEKLRRESEN--SKKTFEEKKSILKAELERKMAEVQAEFRRKFHEV----------EAEHNTRTTKIEKDKNLVIMN 105 (115)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 45566554322 1222334566666677777777666665554443 344444577888888888763
No 265
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.39 E-value=2.2e+02 Score=22.26 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 276 KGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 276 ~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
.++..|..++..+..|+..||.++..|+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 266
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=27.38 E-value=2.2e+02 Score=22.16 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.+|..|+.+|..|..++..+.++... .-.......+..||..|..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~--~~~~~ye~~i~~Lr~~i~~ 67 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQ 67 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555543221 1222234445555544443
No 267
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=26.89 E-value=3.6 Score=33.79 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 270 EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+...|..++..|.++...|..||..|+.++..|+.++...
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667777788888888888888887766553
No 268
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.88 E-value=89 Score=19.39 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGL 278 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l 278 (327)
|..+|..|..|...|+.++
T Consensus 5 lkdevgelkgevralkdev 23 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHH
Confidence 3344444444444444333
No 269
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.44 E-value=2.3e+02 Score=22.11 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+|-.+|..|+.....|-.+-.....++..- |.++..|+..|
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsT-------K~El~~Lq~qL 63 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKAT-------KAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHH
Confidence 444444444444444433333333333333 34455555444
No 270
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.41 E-value=1.8e+02 Score=23.91 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 020381 258 NELETQAGQLR 268 (327)
Q Consensus 258 ~eLE~qV~~L~ 268 (327)
.+|+.++..|+
T Consensus 91 ~~l~~~i~~L~ 101 (142)
T 3gp4_A 91 IELKNRIDVMQ 101 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 271
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.25 E-value=2.6e+02 Score=27.11 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 282 NQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 282 ~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
..+...+..+-..|.+++.++..++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555544
No 272
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=25.68 E-value=1.8e+02 Score=20.69 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVTY 308 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~ 308 (327)
.|+.++..++.-...+...+..+.-+......++...+..+..|..|+..
T Consensus 9 ~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~ 58 (66)
T 3m0a_A 9 SLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQ 58 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Confidence 34444444444334444455544444445555555556667777766544
No 273
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.65 E-value=3e+02 Score=24.69 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 020381 258 NELETQAGQL 267 (327)
Q Consensus 258 ~eLE~qV~~L 267 (327)
.+|+.++..|
T Consensus 69 ~~l~~e~~el 78 (213)
T 4ani_A 69 AELEAKLSEM 78 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 274
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.54 E-value=35 Score=32.60 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~ 286 (327)
.|..||.+|..++.+...|...+..++.++.
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~ 35 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIV 35 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665555555555555444444
No 275
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=25.52 E-value=2.7e+02 Score=22.56 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 231 VDDKRARRMLSNRESARRSRRR-------KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (327)
Q Consensus 231 ~e~KR~RR~lsNRESArRSR~R-------Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lr 303 (327)
...+..+.+.......-.-+.. -+..+.+.+..+..|......|..++.++..++......|..|...-..|.
T Consensus 31 k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle 110 (129)
T 2fxo_A 31 KSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 020381 304 AKVTYY 309 (327)
Q Consensus 304 akv~~a 309 (327)
..|...
T Consensus 111 ~e~~~L 116 (129)
T 2fxo_A 111 DECSEL 116 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 276
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=25.00 E-value=2.4e+02 Score=25.44 Aligned_cols=32 Identities=6% Similarity=-0.095 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
+.+....+-+...||..|..+...++++..-.
T Consensus 117 ~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~ 148 (214)
T 2cly_A 117 LVQKRHYLFDVQRNNIAMALEVTYRERLHRVY 148 (214)
T ss_dssp HTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555555555555444333
No 277
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.93 E-value=2.3e+02 Score=25.52 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 256 HLNELETQAGQLRAEHSSLLKGLT 279 (327)
Q Consensus 256 ~l~eLE~qV~~L~~EN~~L~~~l~ 279 (327)
.++.|+.++..|+.+...|..++-
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~l 83 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYL 83 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665555555544443
No 278
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.79 E-value=2.9e+02 Score=23.07 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 293 RILKADIETLRAKVTYYFIRI 313 (327)
Q Consensus 293 ~~Lkaql~~Lrakv~~av~r~ 313 (327)
+.-+.+...|..+++.+|...
T Consensus 122 Rir~~q~~~L~~kf~~~m~~y 142 (180)
T 1s94_A 122 RIRKTQYSTISRKFVEVMSDY 142 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666788899999988885543
No 279
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.42 E-value=84 Score=21.35 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLL 275 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~ 275 (327)
..+..|+.++..|+.|...|.
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555443
No 280
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.16 E-value=1.6e+02 Score=22.63 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 020381 295 LKADIETLRAKVT 307 (327)
Q Consensus 295 Lkaql~~Lrakv~ 307 (327)
|..++..|+.+++
T Consensus 96 l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 96 LNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 281
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.99 E-value=5.5e+02 Score=25.64 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVN-----QKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~-----qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+..+.+++..|..+..+...+...+.++. ..+..|...-..|+.+|..|..++...
T Consensus 134 Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 134 QKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455445554444444433333222 233444444556777777777776554
No 282
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=23.76 E-value=1.5e+02 Score=23.03 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
+.+.+|...|..|+.|-.-...+|.++.-=|+..
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~ 41 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEH 41 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888888887777666555443
No 283
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.54 E-value=2.5e+02 Score=21.52 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 020381 295 LKADIETLRA 304 (327)
Q Consensus 295 Lkaql~~Lra 304 (327)
|..++..++.
T Consensus 89 le~~~~~l~~ 98 (117)
T 2zqm_A 89 LERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 284
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=23.33 E-value=45 Score=28.25 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020381 291 NNRILKADIETLRAKVTY 308 (327)
Q Consensus 291 EN~~Lkaql~~Lrakv~~ 308 (327)
.|..|+-+++.+++.|+|
T Consensus 56 ~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 56 QVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 285
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.28 E-value=2e+02 Score=22.94 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E 291 (327)
+.+++.|+.+++.|+..-..++.+++.+.+.++.+...
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 286
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.15 E-value=1.3e+02 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (327)
Q Consensus 258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~ 289 (327)
..||.++..++.....+..++..+.+++..++
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666655555555555555555555544
No 287
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.00 E-value=89 Score=30.57 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLL 275 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~ 275 (327)
+++.+++.++..+......|.
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~ 45 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLE 45 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444333333
No 288
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.88 E-value=1.4e+02 Score=20.61 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020381 288 SAVNNRILKADIETLRAKV 306 (327)
Q Consensus 288 l~~EN~~Lkaql~~Lrakv 306 (327)
++.|-..|...+..|..|+
T Consensus 25 leselqalekklaalkskl 43 (48)
T 1g6u_A 25 LESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 289
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.78 E-value=2.4e+02 Score=21.16 Aligned_cols=34 Identities=12% Similarity=0.306 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
+.+|+-++.++.+|+..-.....++.+.++++.+
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~e 42 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMD 42 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665555555555544444443
No 290
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.57 E-value=2.2e+02 Score=22.78 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (327)
Q Consensus 257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~ 290 (327)
+..|..++..|+.+-+.|-..+..+++++..+..
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666666666666666666666666666553
No 291
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.49 E-value=2.5e+02 Score=21.25 Aligned_cols=34 Identities=6% Similarity=0.166 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVT 307 (327)
Q Consensus 274 L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~ 307 (327)
|..+...+...+..+..+=..|+.++..|+.+++
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555544443
No 292
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=22.12 E-value=3e+02 Score=22.84 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 285 YDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 285 ~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
|.....+-..|..++..|..+|..+
T Consensus 48 y~aak~~q~~~e~ri~~L~~~L~~a 72 (156)
T 2f23_A 48 LEAAKQEKARIEARIDSLEDILSRA 72 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555556666777788888777665
No 293
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=21.76 E-value=2.4e+02 Score=20.60 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLT 279 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~ 279 (327)
.|..+|..|+.||..|.+.++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443
No 294
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.56 E-value=1.4e+02 Score=19.81 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLT 279 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~ 279 (327)
.....+++|+.+|..|..++.
T Consensus 11 a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHH
Confidence 344556666666666665553
No 295
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.30 E-value=2.8e+02 Score=21.15 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020381 279 TDVNQKYDESAVNNRILKADIET 301 (327)
Q Consensus 279 ~~L~qk~~~l~~EN~~Lkaql~~ 301 (327)
..++..+..++.+-..+|++++.
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 296
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.19 E-value=2.9e+02 Score=21.32 Aligned_cols=54 Identities=31% Similarity=0.374 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
...++.|+-|..--+.|..=-+.|..-++.|.++...+...=.+|+...+.|..
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777778888777888888888888888888888888888777754
No 297
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.05 E-value=1.9e+02 Score=26.64 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 260 LETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (327)
Q Consensus 260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~ 287 (327)
|-.+|+.++...+.|..++.++.+..+.
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~ 31 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKF 31 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333
No 298
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=21.02 E-value=77 Score=28.30 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 255 AHLNELETQAGQLRAEHSSLLKGLTD 280 (327)
Q Consensus 255 ~~l~eLE~qV~~L~~EN~~L~~~l~~ 280 (327)
..+.+|+.+..+|+.||+.|.++-.+
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~~~ 186 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDWND 186 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
No 299
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.77 E-value=4e+02 Score=22.85 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 278 LTDVNQKYDESAVNNRILKADIETLRAKVTYY 309 (327)
Q Consensus 278 l~~L~qk~~~l~~EN~~Lkaql~~Lrakv~~a 309 (327)
+...+.+...+...|..|+.++..-..+|...
T Consensus 103 Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 103 VADARKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777888877777777666554
No 300
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=20.42 E-value=4.2e+02 Score=24.21 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 235 RARRMLSN-----RESARRSRRRKQAHLNELETQAGQLRAEHSS-LLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (327)
Q Consensus 235 R~RR~lsN-----RESArRSR~RKk~~l~eLE~qV~~L~~EN~~-L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lrakv 306 (327)
+..+.+.. ...|...+.|=..++++|..++..+-.+... |...+..+...+..+. ..|+++++.+|+++
T Consensus 151 kl~~~~e~L~~ql~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~---~~~~qq~e~f~~~~ 225 (273)
T 3s84_A 151 KLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELG---GHLDQQVEEFRRRV 225 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHh
No 301
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.24 E-value=1.9e+02 Score=20.01 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (327)
Q Consensus 259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l 288 (327)
+|-+++...-.|.+.-..+++.++.+...|
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 302
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.17 E-value=2e+02 Score=23.40 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020381 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (327)
Q Consensus 271 N~~L~~~l~~L~qk~~~l~~EN~~Lkaql~~Lra 304 (327)
+..|.+++...++++..+..+...|+..++.|..
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!