Query 020383
Match_columns 327
No_of_seqs 80 out of 82
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 16:03:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 50.6 15 0.0005 26.8 3.5 25 13-37 3-27 (60)
2 3kgw_A Alanine-glyoxylate amin 48.5 29 0.00098 29.4 5.5 25 41-65 326-350 (393)
3 1rz4_A Eukaryotic translation 46.1 11 0.00036 33.5 2.5 23 49-71 167-189 (226)
4 1mdy_A Protein (MYOD BHLH doma 45.4 51 0.0017 24.5 5.8 31 8-38 8-38 (68)
5 3ix7_A Uncharacterized protein 42.0 51 0.0018 27.3 5.9 48 15-64 51-102 (134)
6 3bni_A Putative TETR-family tr 41.3 31 0.0011 27.6 4.4 47 14-71 36-82 (229)
7 4b0z_A RPN12, 26S proteasome r 37.8 36 0.0012 29.6 4.6 50 17-70 171-225 (229)
8 3u5v_A Protein MAX, transcript 37.2 20 0.00068 27.3 2.5 27 11-37 4-30 (76)
9 2d5w_A Peptide ABC transporter 36.3 40 0.0014 32.1 5.0 22 50-71 375-396 (603)
10 3frk_A QDTB; aminotransferase, 36.1 40 0.0014 29.0 4.5 46 17-64 247-307 (373)
11 3him_A Probable transcriptiona 35.6 39 0.0013 25.6 3.9 46 16-72 11-56 (211)
12 3isl_A Purine catabolism prote 35.5 65 0.0022 27.7 5.7 44 22-65 294-352 (416)
13 2kxh_B Peptide of FAR upstream 35.2 14 0.00047 24.9 1.2 11 20-30 14-24 (31)
14 1hlo_A Protein (transcription 35.1 72 0.0024 23.7 5.3 44 11-54 11-54 (80)
15 3nnk_A Ureidoglycine-glyoxylat 35.0 56 0.0019 28.0 5.3 44 22-65 294-352 (411)
16 3uwc_A Nucleotide-sugar aminot 33.9 56 0.0019 27.8 5.1 48 17-65 248-311 (374)
17 2huf_A Alanine glyoxylate amin 32.3 76 0.0026 27.1 5.6 45 21-65 286-345 (393)
18 3kkc_A TETR family transcripti 31.3 79 0.0027 23.5 5.0 46 15-71 6-51 (177)
19 1nkp_B MAX protein, MYC proto- 31.2 91 0.0031 23.1 5.3 42 13-54 3-44 (83)
20 3nyt_A Aminotransferase WBPE; 28.0 1.2E+02 0.004 26.2 6.1 26 17-43 246-271 (367)
21 2o1b_A Aminotransferase, class 27.8 81 0.0028 27.7 5.2 25 41-65 342-366 (404)
22 3lvu_A ABC transporter, peripl 27.0 51 0.0017 27.4 3.6 18 50-67 102-119 (258)
23 1pb6_A Hypothetical transcript 26.6 77 0.0026 24.2 4.3 44 17-71 14-57 (212)
24 3lwj_A Putative TETR-family tr 24.8 87 0.003 23.8 4.2 45 16-71 7-51 (202)
25 3mvp_A TETR/ACRR transcription 24.4 1.1E+02 0.0037 23.3 4.7 45 16-71 21-65 (217)
26 3f1b_A TETR-like transcription 24.4 84 0.0029 23.7 4.1 44 17-71 10-53 (203)
27 3qqa_A CMER; alpha-helical, he 24.0 1.4E+02 0.0048 22.7 5.3 47 14-71 12-58 (216)
28 2qwt_A Transcriptional regulat 23.0 1.3E+02 0.0045 23.2 5.1 26 17-43 9-34 (196)
29 3lhq_A Acrab operon repressor 22.4 1.4E+02 0.0048 22.6 5.0 26 15-40 8-33 (220)
30 3dcf_A Transcriptional regulat 22.3 83 0.0028 24.0 3.7 45 16-71 26-70 (218)
31 3hbx_A GAD 1, glutamate decarb 21.3 1E+02 0.0034 28.8 4.7 49 14-63 338-402 (502)
32 3ez1_A Aminotransferase MOCR f 21.2 1.8E+02 0.0061 25.4 6.0 24 49-72 357-380 (423)
33 3dpj_A Transcription regulator 20.6 1.1E+02 0.0037 23.1 4.0 45 16-71 3-47 (194)
34 2qko_A Possible transcriptiona 20.5 1.2E+02 0.004 23.6 4.3 43 19-72 26-68 (215)
35 3ry3_A Putative solute-binding 20.3 85 0.0029 29.6 4.0 49 23-71 297-355 (528)
36 3nra_A Aspartate aminotransfer 20.2 1.9E+02 0.0063 24.8 5.8 24 46-70 349-372 (407)
37 3dr4_A Putative perosamine syn 20.2 1.7E+02 0.0059 25.1 5.7 25 17-42 268-292 (391)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=50.61 E-value=15 Score=26.78 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhh
Q 020383 13 RDNNKRRERRRRAIAAKIYAGLRMY 37 (327)
Q Consensus 13 rEnnk~RERrRRaIaakI~aGlr~~ 37 (327)
|.....|||+|+.---.-|.-||.+
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~ 27 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKV 27 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5556689999999999999999986
No 2
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=48.47 E-value=29 Score=29.42 Aligned_cols=25 Identities=4% Similarity=0.174 Sum_probs=19.3
Q ss_pred CCCCcCChHHHHHHHHHHhCceEcC
Q 020383 41 RLPKHCDNNEVLKALCNEAGWTVEE 65 (327)
Q Consensus 41 ~lp~~~d~n~vl~al~~eagw~ve~ 65 (327)
.+|+..|..+|.+.|.+++|..|.+
T Consensus 326 ~~~~~~~~~~~~~~l~~~~gi~v~~ 350 (393)
T 3kgw_A 326 TVPAGYNWRDIVSYVLDHFSIEISG 350 (393)
T ss_dssp ECCTTBCHHHHHHHHHHHHCEECBC
T ss_pred eCCCCCCHHHHHHHHHHhCCEEEeC
Confidence 3455567788999998888988875
No 3
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=46.08 E-value=11 Score=33.54 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCceEcCCCcccc
Q 020383 49 NEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 49 n~vl~al~~eagw~ve~dgttyr 71 (327)
++-++..|.+.||.|+.||..|=
T Consensus 167 ~~el~~fi~~~GW~vd~~g~I~~ 189 (226)
T 1rz4_A 167 DSQLKVWMSKYGWSADESGQIFI 189 (226)
T ss_dssp HHHHHHHHHHHTCEECC--CEEC
T ss_pred HHHHHHHHHHCCCEECCCccEEe
Confidence 46677888889999999997754
No 4
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=45.38 E-value=51 Score=24.54 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.7
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHhhhhhC
Q 020383 8 PTWKERDNNKRRERRRRAIAAKIYAGLRMYG 38 (327)
Q Consensus 8 ptw~ErEnnk~RERrRRaIaakI~aGlr~~g 38 (327)
.+..-|.....|||+|+.---.-|..||.+=
T Consensus 8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~i 38 (68)
T 1mdy_A 8 TNADRRKAATMRERRRLSKVNEAFETLKRST 38 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677778899999999999999999873
No 5
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=41.96 E-value=51 Score=27.31 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhCCC----CCCCcCChHHHHHHHHHHhCceEc
Q 020383 15 NNKRRERRRRAIAAKIYAGLRMYGNY----RLPKHCDNNEVLKALCNEAGWTVE 64 (327)
Q Consensus 15 nnk~RERrRRaIaakI~aGlr~~gny----~lp~~~d~n~vl~al~~eagw~ve 64 (327)
.+.+|.|-||++ .|...||..+++ .+|...+..+.|.+||.+.|-++-
T Consensus 51 d~~~r~rGr~gL--~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~~~~lv 102 (134)
T 3ix7_A 51 DPLRRAKGRRGL--ETLERLREAAPLEVLETTPKGESVDEKLLFLARDLEAALV 102 (134)
T ss_dssp SHHHHHHHHHHH--HHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHTTCEEE
T ss_pred chhhHHHHHHHH--HHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHhCCEEE
Confidence 356888888887 488888865442 456677889999999999876553
No 6
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=41.31 E-value=31 Score=27.61 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 14 DNNKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 14 Ennk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
-..++++.+|++|...-..=+..+|--.+- ++.+|++||.. -||.|+
T Consensus 36 ~~~~r~~~~r~~Il~aA~~l~~~~G~~~~t--------v~~IA~~AGvs---~~t~Y~ 82 (229)
T 3bni_A 36 PVQRRSAERLTRILDACADLLDEVGYDALS--------TRAVALRADVP---IGSVYR 82 (229)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCTTTCC--------HHHHHHHHTCC---HHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHhcChhhcc--------HHHHHHHHCCC---chhHHH
Confidence 344556677778877777777777743332 33455556542 345555
No 7
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=37.81 E-value=36 Score=29.59 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCC-----CcCChHHHHHHHHHHhCceEcCCCccc
Q 020383 17 KRRERRRRAIAAKIYAGLRMYGNYRLP-----KHCDNNEVLKALCNEAGWTVEEDGTTY 70 (327)
Q Consensus 17 k~RERrRRaIaakI~aGlr~~gny~lp-----~~~d~n~vl~al~~eagw~ve~dgtty 70 (327)
...+|=|..|+.-|-. .|-.+.|. =.-|+.+=+...|.+.||.++ ||..|
T Consensus 171 ~l~~~vR~~~l~~i~k---aY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~-dg~i~ 225 (229)
T 4b0z_A 171 IVMSMVRNEIATCAEK---VYSEIPLSNATSLLYLENTKETEKLAEERGWDIR-DGVIY 225 (229)
T ss_dssp HHHHHHHHHHHHHHHH---HCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHHH---HcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEe-CCEEe
Confidence 3556777778877753 44322222 244666777889999999997 88776
No 8
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=37.22 E-value=20 Score=27.27 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=18.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020383 11 KERDNNKRRERRRRAIAAKIYAGLRMY 37 (327)
Q Consensus 11 ~ErEnnk~RERrRRaIaakI~aGlr~~ 37 (327)
.-|++...|||+||.=.-.-|..||..
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~ 30 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRM 30 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHH
Confidence 447777889999998878888888875
No 9
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus}
Probab=36.31 E-value=40 Score=32.14 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCceEcCCCcccc
Q 020383 50 EVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 50 ~vl~al~~eagw~ve~dgttyr 71 (327)
|--|+|.+||||..+.||..+.
T Consensus 375 ~kAk~LL~eAG~~~~~dG~~~~ 396 (603)
T 2d5w_A 375 KKAEALLAEMGWRKGPDGILQR 396 (603)
T ss_dssp HHHHHHHHHTTCEECTTSCEEE
T ss_pred HHHHHHHHHcCCcCCCCCeEee
Confidence 5668899999999777775544
No 10
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=36.12 E-value=40 Score=28.98 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCCCc--------------C-ChHHHHHHHHHHhCceEc
Q 020383 17 KRRERRRRAIAAKIYAGLRMYGNYRLPKH--------------C-DNNEVLKALCNEAGWTVE 64 (327)
Q Consensus 17 k~RERrRRaIaakI~aGlr~~gny~lp~~--------------~-d~n~vl~al~~eagw~ve 64 (327)
+++.+||++++.++..+|+..+ +.+|.. . |..+|.++| ++.|..|-
T Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~ 307 (373)
T 3frk_A 247 DKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYL-NNNGIGTL 307 (373)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESSHHHHHHHH-HHTTBCCB
T ss_pred HHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHH-HHCCCCcc
Confidence 4456678889999999999887 666521 1 344555555 45587664
No 11
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=35.59 E-value=39 Score=25.65 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCccccc
Q 020383 16 NKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYRK 72 (327)
Q Consensus 16 nk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr~ 72 (327)
.++++++|++|...-..=+..+|--+ .. ++.+|++||. .-||.|+.
T Consensus 11 ~~~~~~~r~~Il~aa~~l~~~~G~~~----~t----~~~Ia~~agv---s~~t~Y~~ 56 (211)
T 3him_A 11 ELGTSKAAARIRAAAIEVFAAKGYGA----TT----TREIAASLDM---SPGAVYPH 56 (211)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCSTT----CC----HHHHHHHTTC---CTTSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCc----CC----HHHHHHHhCC---CcChhhhc
Confidence 34555666677665555566666322 22 4457788886 46777873
No 12
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=35.47 E-value=65 Score=27.65 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhhhC------------C---CCCCCcCChHHHHHHHHHHhCceEcC
Q 020383 22 RRRAIAAKIYAGLRMYG------------N---YRLPKHCDNNEVLKALCNEAGWTVEE 65 (327)
Q Consensus 22 rRRaIaakI~aGlr~~g------------n---y~lp~~~d~n~vl~al~~eagw~ve~ 65 (327)
+.++.+..+..+|+..| + +.+|+..|..+|.+.|.+++|..|..
T Consensus 294 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~ 352 (416)
T 3isl_A 294 RHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIAS 352 (416)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBC
T ss_pred HHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEec
Confidence 34445555666665542 1 33455567889999998888988873
No 13
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=35.19 E-value=14 Score=24.91 Aligned_cols=11 Identities=64% Similarity=0.706 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 020383 20 ERRRRAIAAKI 30 (327)
Q Consensus 20 ERrRRaIaakI 30 (327)
-+|-|+|||||
T Consensus 14 ~~RaRQIaAKi 24 (31)
T 2kxh_B 14 LQRARQIAAKI 24 (31)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 35778999998
No 14
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=35.12 E-value=72 Score=23.65 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=30.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHH
Q 020383 11 KERDNNKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKA 54 (327)
Q Consensus 11 ~ErEnnk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~a 54 (327)
.-|.+-..+||+||.--..-|.-||.+=-.-.....+--++|+.
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~ 54 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDK 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHH
Confidence 45777788999999988888999988632111134566666654
No 15
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=35.02 E-value=56 Score=27.99 Aligned_cols=44 Identities=14% Similarity=0.316 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhhCC---------------CCCCCcCChHHHHHHHHHHhCceEcC
Q 020383 22 RRRAIAAKIYAGLRMYGN---------------YRLPKHCDNNEVLKALCNEAGWTVEE 65 (327)
Q Consensus 22 rRRaIaakI~aGlr~~gn---------------y~lp~~~d~n~vl~al~~eagw~ve~ 65 (327)
+.++.+..+..+|+..|- +.+|+..|..+|.+.|.++.|..|-+
T Consensus 294 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~ 352 (411)
T 3nnk_A 294 RHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGT 352 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeC
Confidence 344555566666665531 23455567788999888888998864
No 16
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=33.93 E-value=56 Score=27.77 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCC-CCCCCc--------------C-ChHHHHHHHHHHhCceEcC
Q 020383 17 KRRERRRRAIAAKIYAGLRMYGN-YRLPKH--------------C-DNNEVLKALCNEAGWTVEE 65 (327)
Q Consensus 17 k~RERrRRaIaakI~aGlr~~gn-y~lp~~--------------~-d~n~vl~al~~eagw~ve~ 65 (327)
+++.+||++++..+..+|+..++ +.+|.. . |..+|.++| .++|..|-.
T Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gi~v~~ 311 (374)
T 3uwc_A 248 ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYL-KDNGIEVKI 311 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHH-HHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHH-HHCCCcccc
Confidence 44566778889999999999887 665521 1 334555554 566877654
No 17
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=32.33 E-value=76 Score=27.07 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhhhC-----------C----CCCCCcCChHHHHHHHHHHhCceEcC
Q 020383 21 RRRRAIAAKIYAGLRMYG-----------N----YRLPKHCDNNEVLKALCNEAGWTVEE 65 (327)
Q Consensus 21 RrRRaIaakI~aGlr~~g-----------n----y~lp~~~d~n~vl~al~~eagw~ve~ 65 (327)
++.++.+.++..+|+++| + +.+|...|..++.+.|.++.|..|.+
T Consensus 286 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~ 345 (393)
T 2huf_A 286 ARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISG 345 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBC
T ss_pred HHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEec
Confidence 344455666666666542 1 12232345667888888888988864
No 18
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=31.27 E-value=79 Score=23.54 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 15 NNKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 15 nnk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
..++++++|++|......=+..+|--+ .. ++.+|++||.- -||.|+
T Consensus 6 ~~~r~~~tr~~Il~aa~~l~~~~G~~~----~t----v~~Ia~~agvs---~~t~Y~ 51 (177)
T 3kkc_A 6 KDRQIQKTKVAIYNAFISLLQENDYSK----IT----VQDVIGLANVG---RSTFYS 51 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCTTT----CC----HHHHHHHHCCC---HHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCChhH----hh----HHHHHHHhCCc---HhhHHH
Confidence 456677777777666666566655222 22 44577777764 367776
No 19
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.16 E-value=91 Score=23.10 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHH
Q 020383 13 RDNNKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKA 54 (327)
Q Consensus 13 rEnnk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~a 54 (327)
|++-..+||+||.--..-|.-||..=-.-.....+-.+||+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~ 44 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDK 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Confidence 677888999999888888888887521111134566666654
No 20
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=28.05 E-value=1.2e+02 Score=26.15 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCC
Q 020383 17 KRRERRRRAIAAKIYAGLRMYGNYRLP 43 (327)
Q Consensus 17 k~RERrRRaIaakI~aGlr~~gny~lp 43 (327)
+.+.+||++++.++..+|+..| +.+|
T Consensus 246 ~~~~~~~~~~~~~~~~~L~~~~-~~~~ 271 (367)
T 3nyt_A 246 EEEIALRQKVAAEYDLSLKQVG-IGTP 271 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred HHHHHHHHHHHHHHHHHhccCC-eecc
Confidence 3445667888889999998885 5554
No 21
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=27.77 E-value=81 Score=27.71 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=18.4
Q ss_pred CCCCcCChHHHHHHHHHHhCceEcC
Q 020383 41 RLPKHCDNNEVLKALCNEAGWTVEE 65 (327)
Q Consensus 41 ~lp~~~d~n~vl~al~~eagw~ve~ 65 (327)
.+|...|..++.+.|.+++|..|.+
T Consensus 342 ~~~~~~~~~~l~~~l~~~~gi~v~~ 366 (404)
T 2o1b_A 342 ETPPGYDSEQFEQFLVQEKSILVAP 366 (404)
T ss_dssp ECCTTCCHHHHHHHHHHHHCEECEE
T ss_pred eCCCCCCHHHHHHHHHHHCCEEEeC
Confidence 4454456678888888889988854
No 22
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=27.02 E-value=51 Score=27.42 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCceEcCCC
Q 020383 50 EVLKALCNEAGWTVEEDG 67 (327)
Q Consensus 50 ~vl~al~~eagw~ve~dg 67 (327)
|--|+|.+||||....||
T Consensus 102 ~kAk~LL~eaG~~~~~~g 119 (258)
T 3lvu_A 102 RRAAQFLEQAGFRIEQGQ 119 (258)
T ss_dssp HHHHHHHHHTTCEEETTE
T ss_pred HHHHHHHHHcCCEeCCCc
Confidence 566789999999976555
No 23
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=26.59 E-value=77 Score=24.17 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 17 KRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 17 k~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
++++++|++|-..-..=+..+|--.+- ++.+|++||.. -||.|+
T Consensus 14 ~~~~~~r~~Il~aa~~l~~~~G~~~~s--------~~~Ia~~agvs---~~t~Y~ 57 (212)
T 1pb6_A 14 RAVSAKKKAILSAALDTFSQFGFHGTR--------LEQIAELAGVS---KTNLLY 57 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCTTTCC--------HHHHHHHTTSC---HHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHcCcchhh--------HHHHHHHHCCC---hhHHHH
Confidence 445666677766666666666633321 34466666643 355555
No 24
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=24.75 E-value=87 Score=23.75 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 16 NKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 16 nk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
.++++++|++|...-..=+..+| |. ... ++.+|++||.. -||.|+
T Consensus 7 ~~~~~~~r~~Il~aa~~l~~~~G-~~---~~t----~~~Ia~~agvs---~~t~Y~ 51 (202)
T 3lwj_A 7 EKQNKERRQKILTCSLDLFIEKG-YY---NTS----IRDIIALSEVG---TGTFYN 51 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHC-TT---TCC----HHHHHHHHCSC---HHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcC-cc---cCC----HHHHHHHhCCC---chhHHH
Confidence 34566777777666666566666 32 222 44577788763 356665
No 25
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=24.41 E-value=1.1e+02 Score=23.34 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 16 NKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 16 nk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
.++++++|++|...-..=+..+|--. .. ++.+|++||. .-|+.|+
T Consensus 21 ~~~~~~~r~~Il~aA~~l~~~~G~~~----~t----~~~Ia~~agv---s~~t~Y~ 65 (217)
T 3mvp_A 21 QERSIEKRNKILQVAKDLFSDKTYFN----VT----TNEIAKKADV---SVGTLYA 65 (217)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCGGG----CC----HHHHHHHHTS---CHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHcCccc----cC----HHHHHHHhCC---ChhHHHH
Confidence 34566777777666666666766222 22 3456777775 3455555
No 26
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=24.35 E-value=84 Score=23.68 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 17 KRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 17 k~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
++++.+|++|...-..=+..+|--.+- ++.+|++||. .-||.|+
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~t--------i~~Ia~~agv---s~~t~Y~ 53 (203)
T 3f1b_A 10 LPRAVREQQMLDAAVDVFSDRGFHETS--------MDAIAAKAEI---SKPMLYL 53 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTTCC--------HHHHHHHTTS---CHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCccccc--------HHHHHHHhCC---chHHHHH
Confidence 345666777777777777777743332 4456777775 3466666
No 27
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=24.02 E-value=1.4e+02 Score=22.74 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 14 DNNKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 14 Ennk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
.+.+|.|++|++|...-..=+..+|--.+ . ++.+|++||. --||.|+
T Consensus 12 ~~~~r~~~~r~~Il~aA~~lf~~~G~~~~----t----~~~IA~~agv---s~~tlY~ 58 (216)
T 3qqa_A 12 TPSQKVLARQEKIKAVALELFLTKGYQET----S----LSDIIKLSGG---SYSNIYD 58 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTTC----C----HHHHHHHHTT---SCCSSSC
T ss_pred CCCcccHHHHHHHHHHHHHHHHHcChhhC----C----HHHHHHHhCC---CHHHHHH
Confidence 34566777788887666666666664332 2 4567888886 4577777
No 28
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=22.99 E-value=1.3e+02 Score=23.19 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCC
Q 020383 17 KRRERRRRAIAAKIYAGLRMYGNYRLP 43 (327)
Q Consensus 17 k~RERrRRaIaakI~aGlr~~gny~lp 43 (327)
++.+++|++|...-..=+..+| |.+-
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G-~~~t 34 (196)
T 2qwt_A 9 ADAARNRARVLEVAYDTFAAEG-LGVP 34 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-TTSC
T ss_pred chhhhHHHHHHHHHHHHHHhcC-CCCC
Confidence 3445667777766666677788 5543
No 29
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=22.40 E-value=1.4e+02 Score=22.56 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhCCC
Q 020383 15 NNKRRERRRRAIAAKIYAGLRMYGNY 40 (327)
Q Consensus 15 nnk~RERrRRaIaakI~aGlr~~gny 40 (327)
..++++++|++|......=+..+|--
T Consensus 8 ~~~~~~~~r~~Il~aa~~l~~~~G~~ 33 (220)
T 3lhq_A 8 TKQQALETRQHILDVALRLFSQQGVS 33 (220)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHCST
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcc
Confidence 34556677788866666666677643
No 30
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.31 E-value=83 Score=24.01 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 16 NKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 16 nk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
.++++++|++|......=+..+|--.+ . ++.+|++||.- -||.|+
T Consensus 26 ~~~~~~~r~~Il~aa~~l~~~~G~~~~----t----v~~Ia~~agvs---~~t~Y~ 70 (218)
T 3dcf_A 26 GRTGNDRRTQIIKVATELFREKGYYAT----S----LDDIADRIGFT---KPAIYY 70 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCTTTC----C----HHHHHHHHTCC---HHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHcCcccC----c----HHHHHHHhCCC---HHHHHH
Confidence 344556677776666666666663222 2 34567777752 356665
No 31
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=21.27 E-value=1e+02 Score=28.79 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhCCCCCCCc----------------CChHHHHHHHHHHhCceE
Q 020383 14 DNNKRRERRRRAIAAKIYAGLRMYGNYRLPKH----------------CDNNEVLKALCNEAGWTV 63 (327)
Q Consensus 14 Ennk~RERrRRaIaakI~aGlr~~gny~lp~~----------------~d~n~vl~al~~eagw~v 63 (327)
|.-+.+-++..+.+.++..+|+++|++.+-.. .+..+|.++| .+.||+|
T Consensus 338 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L-~~~Gi~v 402 (502)
T 3hbx_A 338 EGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDML-RRYGWIV 402 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHH-HTTTCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHH-HhCCcEE
Confidence 33345556666788899999999986654211 1112555554 6789988
No 32
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=21.16 E-value=1.8e+02 Score=25.35 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCceEcCCCccccc
Q 020383 49 NEVLKALCNEAGWTVEEDGTTYRK 72 (327)
Q Consensus 49 n~vl~al~~eagw~ve~dgttyr~ 72 (327)
.+.+..+++++|..|-+.|..|-.
T Consensus 357 ~~~~~~~l~~~gv~v~~~g~~~~~ 380 (423)
T 3ez1_A 357 ADRVVKLAEAAGVSLTPAGATYPA 380 (423)
T ss_dssp HHHHHHHHHHTTEECCCTTTTSST
T ss_pred HHHHHHHHHHCCcEEecCcccccC
Confidence 345556778999999887777643
No 33
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=20.58 E-value=1.1e+02 Score=23.15 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 16 NKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 16 nk~RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
+.+++++|++|...-+.=+..+|--.+- ++.+|++||.. -|+.|+
T Consensus 3 ~~~~~~~r~~Il~aA~~l~~~~G~~~~t--------~~~IA~~Agvs---~~tly~ 47 (194)
T 3dpj_A 3 AMVQAQTRDQIVAAADELFYRQGFAQTS--------FVDISAAVGIS---RGNFYY 47 (194)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHCTTTCC--------HHHHHHHHTCC---HHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHcCcccCC--------HHHHHHHHCCC---hHHHHH
Confidence 4567777888877666666777633322 34466666653 355555
No 34
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=20.48 E-value=1.2e+02 Score=23.63 Aligned_cols=43 Identities=26% Similarity=0.213 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhhhhCCCCCCCcCChHHHHHHHHHHhCceEcCCCccccc
Q 020383 19 RERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYRK 72 (327)
Q Consensus 19 RERrRRaIaakI~aGlr~~gny~lp~~~d~n~vl~al~~eagw~ve~dgttyr~ 72 (327)
++++|++|...-..=+..+| |. ... ++.+|++||. .-||.|+.
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G-~~---~~t----v~~IA~~agv---s~~t~Y~~ 68 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREG-AR---GLT----FRAVDVEANV---PKGTASNY 68 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTC-TT---TCC----HHHHHHHSSS---TTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhC-hh---hcc----HHHHHHHcCC---CcchHHHh
Confidence 34456666555555555655 32 222 4557888886 46788873
No 35
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=20.34 E-value=85 Score=29.58 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhhhCCCCCC----------CcCChHHHHHHHHHHhCceEcCCCcccc
Q 020383 23 RRAIAAKIYAGLRMYGNYRLP----------KHCDNNEVLKALCNEAGWTVEEDGTTYR 71 (327)
Q Consensus 23 RRaIaakI~aGlr~~gny~lp----------~~~d~n~vl~al~~eagw~ve~dgttyr 71 (327)
|.+|+..||.|.-.-.+-.+| ...-+-|--|+|.+||||....||-..+
T Consensus 297 r~~i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~d~~kAk~LL~eAG~~~~~dG~~~~ 355 (528)
T 3ry3_A 297 RQLLADQIMEGHAIPAYTGVQGLPWNNPDSAIKDGDIDKAKQILEQAGWQLNSQGTREK 355 (528)
T ss_dssp HHHHHHHHSTTCEEECSSTTTTSTTSCTTCCCCCSCHHHHHHHHHHTTCEECTTSSEEE
T ss_pred HHHHHHHHhcCccccccCCCCCCCCCCCCcCcCCCCHHHHHHHHHHcCCccCCCCEEcc
Confidence 566677777775432221121 1122345678899999998877775443
No 36
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=20.20 E-value=1.9e+02 Score=24.79 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHHhCceEcCCCccc
Q 020383 46 CDNNEVLKALCNEAGWTVEEDGTTY 70 (327)
Q Consensus 46 ~d~n~vl~al~~eagw~ve~dgtty 70 (327)
.+..++.+.|.+++|..|.+ |..|
T Consensus 349 ~~~~~~~~~l~~~~gi~v~~-g~~~ 372 (407)
T 3nra_A 349 VAPAEFVKILRLQAGVVVTP-GTEF 372 (407)
T ss_dssp SCHHHHHHHHHHHHCEECEE-GGGT
T ss_pred CCHHHHHHHHHHhCCEEEeC-chhh
Confidence 35568888888899988865 4433
No 37
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=20.19 E-value=1.7e+02 Score=25.14 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCC
Q 020383 17 KRRERRRRAIAAKIYAGLRMYGNYRL 42 (327)
Q Consensus 17 k~RERrRRaIaakI~aGlr~~gny~l 42 (327)
++..+|+++++.++..+|+.. ++.+
T Consensus 268 ~~~~~~~~~~~~~l~~~L~~~-g~~~ 292 (391)
T 3dr4_A 268 DEHLAARERVVGWYEQKLARL-GNRV 292 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-TTSE
T ss_pred HHHHHHHHHHHHHHHHHhhcC-Cccc
Confidence 345566777888888888877 4443
Done!