Query 020384
Match_columns 327
No_of_seqs 71 out of 73
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uq8_A DNA ligase; adenylated 93.5 0.058 2E-06 51.6 4.5 27 148-174 15-42 (322)
2 3jsl_A DNA ligase; NAD+-depend 92.7 0.082 2.8E-06 50.5 4.1 25 150-174 19-44 (318)
3 4glw_A DNA ligase; inhibitor, 92.5 0.022 7.6E-07 53.7 -0.0 26 149-174 15-41 (305)
4 4esj_A Type-2 restriction enzy 92.4 0.058 2E-06 50.5 2.5 52 256-317 22-73 (257)
5 1zau_A DNA ligase; AMP; HET: D 91.8 0.12 4E-06 49.6 3.9 26 150-175 28-54 (328)
6 1ta8_A DNA ligase, NAD-depende 91.7 0.13 4.3E-06 49.5 4.1 25 150-174 26-51 (332)
7 1nui_A DNA primase/helicase; z 91.6 0.076 2.6E-06 47.2 2.3 34 269-312 11-45 (255)
8 1b04_A Protein (DNA ligase); D 91.6 0.12 4.1E-06 49.3 3.8 25 150-174 21-46 (318)
9 3j20_W 30S ribosomal protein S 90.9 0.25 8.4E-06 37.7 4.1 41 269-318 12-52 (63)
10 4glx_A DNA ligase; inhibitor, 90.7 0.13 4.5E-06 52.6 3.3 26 149-174 18-44 (586)
11 1qxf_A GR2, 30S ribosomal prot 90.6 0.22 7.6E-06 38.3 3.7 39 271-318 6-44 (66)
12 1qyp_A RNA polymerase II; tran 89.0 0.23 7.8E-06 35.6 2.5 38 272-309 15-52 (57)
13 3flo_B DNA polymerase alpha ca 87.6 0.16 5.4E-06 45.8 1.1 54 255-310 4-59 (206)
14 4glw_A DNA ligase; inhibitor, 87.2 0.097 3.3E-06 49.3 -0.5 35 96-130 6-40 (305)
15 2xzm_6 RPS27E; ribosome, trans 86.9 0.76 2.6E-05 36.5 4.5 44 269-321 29-72 (81)
16 1pft_A TFIIB, PFTFIIBN; N-term 86.3 0.37 1.3E-05 33.5 2.2 29 274-311 7-35 (50)
17 3u5c_b RP61, YS20, 40S ribosom 86.1 0.63 2.2E-05 37.1 3.7 44 267-319 29-72 (82)
18 3uq8_A DNA ligase; adenylated 85.9 0.64 2.2E-05 44.4 4.3 35 95-129 6-40 (322)
19 2owo_A DNA ligase; protein-DNA 85.8 0.46 1.6E-05 49.4 3.5 25 150-174 19-44 (671)
20 1zau_A DNA ligase; AMP; HET: D 85.4 0.66 2.3E-05 44.4 4.2 37 94-130 16-52 (328)
21 1b04_A Protein (DNA ligase); D 85.4 0.66 2.3E-05 44.2 4.2 36 95-130 10-45 (318)
22 3jsl_A DNA ligase; NAD+-depend 85.3 0.72 2.5E-05 44.1 4.4 35 95-129 8-42 (318)
23 1ta8_A DNA ligase, NAD-depende 85.0 0.74 2.5E-05 44.2 4.3 36 95-130 15-50 (332)
24 4glx_A DNA ligase; inhibitor, 84.9 0.62 2.1E-05 47.7 3.9 36 95-130 8-43 (586)
25 3j20_Y 30S ribosomal protein S 84.8 0.42 1.4E-05 34.3 1.9 31 269-309 16-46 (50)
26 1twf_L ABC10-alpha, DNA-direct 84.5 0.46 1.6E-05 36.4 2.1 41 270-321 26-67 (70)
27 1dgs_A DNA ligase; AMP complex 84.4 0.42 1.4E-05 49.7 2.5 26 150-175 21-47 (667)
28 3iz6_X 40S ribosomal protein S 83.2 0.61 2.1E-05 37.5 2.4 43 267-318 31-73 (86)
29 1dl6_A Transcription factor II 81.6 0.81 2.8E-05 33.4 2.4 29 274-311 13-41 (58)
30 3sgi_A DNA ligase; HET: DNA AM 80.0 0.24 8.3E-06 51.1 -1.2 25 150-174 28-53 (615)
31 1lko_A Rubrerythrin all-iron(I 78.5 0.67 2.3E-05 40.4 1.3 26 272-309 155-180 (191)
32 2owo_A DNA ligase; protein-DNA 78.0 1.5 5.2E-05 45.6 3.9 36 95-130 8-43 (671)
33 3h0g_L DNA-directed RNA polyme 76.7 1.5 5.3E-05 33.1 2.6 40 270-320 19-59 (63)
34 1x3z_A Peptide: N-glycanase; h 74.8 1.9 6.3E-05 41.8 3.3 58 258-315 103-170 (335)
35 1dgs_A DNA ligase; AMP complex 74.4 1.6 5.5E-05 45.4 3.0 36 95-130 10-45 (667)
36 1d0q_A DNA primase; zinc-bindi 70.8 1.7 6E-05 34.2 1.8 31 271-308 36-66 (103)
37 2k4x_A 30S ribosomal protein S 69.7 2.8 9.6E-05 30.5 2.5 30 271-310 17-46 (55)
38 1tfi_A Transcriptional elongat 69.1 3.3 0.00011 29.5 2.7 38 272-311 9-48 (50)
39 2k1p_A Zinc finger RAN-binding 68.9 2.2 7.4E-05 28.0 1.6 22 274-309 8-29 (33)
40 3sgi_A DNA ligase; HET: DNA AM 68.7 1.5 5.3E-05 45.2 1.3 36 95-130 17-52 (615)
41 3u5c_f 40S ribosomal protein S 68.3 3.2 0.00011 35.2 3.0 36 268-314 114-152 (152)
42 1vq8_Z 50S ribosomal protein L 68.3 2 6.9E-05 33.7 1.6 30 272-311 27-56 (83)
43 2qkd_A Zinc finger protein ZPR 65.8 1.7 5.9E-05 42.8 1.0 31 271-308 11-49 (404)
44 1yuz_A Nigerythrin; rubrythrin 65.4 2.6 8.9E-05 37.2 2.0 27 271-310 170-196 (202)
45 2lk0_A RNA-binding protein 5; 65.3 2.5 8.7E-05 27.5 1.4 22 274-309 7-28 (32)
46 1gh9_A 8.3 kDa protein (gene M 65.0 2.7 9.1E-05 32.3 1.7 29 274-314 6-34 (71)
47 3p2a_A Thioredoxin 2, putative 64.7 3 0.0001 32.6 2.0 31 272-310 5-35 (148)
48 1wii_A Hypothetical UPF0222 pr 63.7 4.7 0.00016 31.9 2.9 36 273-312 24-59 (85)
49 2qkd_A Zinc finger protein ZPR 63.5 3.2 0.00011 40.9 2.3 37 266-309 214-258 (404)
50 3k7a_M Transcription initiatio 62.5 3.4 0.00012 38.7 2.3 33 272-311 21-53 (345)
51 3o9x_A Uncharacterized HTH-typ 62.3 3 0.0001 32.9 1.6 35 274-311 4-47 (133)
52 1pft_A TFIIB, PFTFIIBN; N-term 62.1 5.1 0.00017 27.6 2.6 22 298-319 3-26 (50)
53 2f4m_A Peptide N-glycanase; gl 60.4 8.9 0.0003 36.3 4.7 57 258-315 65-129 (295)
54 2au3_A DNA primase; zinc ribbo 59.9 3.3 0.00011 39.5 1.7 31 271-308 33-63 (407)
55 3gzf_A Replicase polyprotein 1 59.2 25 0.00084 28.7 6.4 66 113-190 18-94 (96)
56 2lcq_A Putative toxin VAPC6; P 58.8 4.4 0.00015 33.9 2.1 34 266-311 126-159 (165)
57 3vc8_A RNA-directed RNA polyme 57.9 24 0.00081 28.7 6.1 67 112-190 12-90 (94)
58 3pwf_A Rubrerythrin; non heme 54.7 5.5 0.00019 34.4 2.1 25 272-309 138-162 (170)
59 3j21_g 50S ribosomal protein L 54.1 4.4 0.00015 29.5 1.1 31 272-317 14-44 (51)
60 2xzf_A Formamidopyrimidine-DNA 54.1 5.6 0.00019 36.4 2.1 35 266-308 232-270 (271)
61 2kdx_A HYPA, hydrogenase/ureas 52.7 5.7 0.0002 31.9 1.8 33 267-311 68-101 (119)
62 3ir9_A Peptide chain release f 52.5 6.3 0.00022 33.9 2.1 43 272-317 78-120 (166)
63 2xzm_9 RPS31E; ribosome, trans 52.1 5.5 0.00019 35.5 1.7 35 269-314 110-145 (189)
64 1k82_A Formamidopyrimidine-DNA 50.9 6.6 0.00023 35.9 2.1 33 267-307 231-267 (268)
65 3h0g_I DNA-directed RNA polyme 50.9 10 0.00035 30.6 3.0 36 272-309 72-109 (113)
66 3m7n_A Putative uncharacterize 50.7 11 0.00038 32.4 3.3 32 266-309 134-165 (179)
67 3u6p_A Formamidopyrimidine-DNA 50.6 6.8 0.00023 36.1 2.1 34 266-307 235-272 (273)
68 1ee8_A MUTM (FPG) protein; bet 50.5 7.5 0.00026 35.6 2.4 28 273-308 236-263 (266)
69 2apo_B Ribosome biogenesis pro 49.2 5.5 0.00019 29.9 1.0 11 272-282 18-28 (60)
70 3po3_S Transcription elongatio 48.5 11 0.00037 32.9 3.0 38 273-312 138-177 (178)
71 1k3x_A Endonuclease VIII; hydr 48.0 7.9 0.00027 35.3 2.1 26 274-307 236-261 (262)
72 3a43_A HYPD, hydrogenase nicke 47.8 16 0.00056 30.4 3.9 43 268-312 66-119 (139)
73 2fiy_A Protein FDHE homolog; F 47.5 12 0.0004 35.4 3.2 14 270-283 180-193 (309)
74 1twf_I B12.6, DNA-directed RNA 47.0 11 0.00037 30.8 2.6 37 272-310 72-110 (122)
75 1l8d_A DNA double-strand break 46.9 4.8 0.00016 31.5 0.4 12 272-283 47-58 (112)
76 3h0g_I DNA-directed RNA polyme 46.4 11 0.00039 30.4 2.6 33 274-312 6-38 (113)
77 3f2b_A DNA-directed DNA polyme 46.0 9.1 0.00031 41.9 2.5 37 274-313 504-540 (1041)
78 3ga8_A HTH-type transcriptiona 45.2 7.9 0.00027 28.9 1.4 35 274-311 4-47 (78)
79 2fiy_A Protein FDHE homolog; F 44.7 11 0.00039 35.5 2.7 37 271-311 221-264 (309)
80 3w0f_A Endonuclease 8-like 3; 44.6 13 0.00044 35.0 3.0 28 274-308 253-281 (287)
81 2aus_D NOP10, ribosome biogene 44.0 7.5 0.00026 29.2 1.1 11 272-282 17-27 (60)
82 1k81_A EIF-2-beta, probable tr 44.0 9 0.00031 25.6 1.4 32 274-312 2-33 (36)
83 6rxn_A Rubredoxin; electron tr 43.6 11 0.00038 26.6 1.8 31 274-309 6-39 (46)
84 1n0z_A ZNF265; zinc finger, RN 42.6 12 0.0004 26.2 1.8 22 274-309 16-39 (45)
85 4bbr_M Transcription initiatio 42.2 12 0.00042 35.2 2.5 31 272-311 21-53 (345)
86 1vq8_Z 50S ribosomal protein L 41.6 15 0.0005 28.8 2.4 24 298-321 25-48 (83)
87 1vk6_A NADH pyrophosphatase; 1 39.9 14 0.00049 33.5 2.4 28 272-309 107-134 (269)
88 1ltl_A DNA replication initiat 39.6 16 0.00056 33.1 2.8 37 267-309 129-165 (279)
89 3c1l_A Putative antioxidant de 38.6 33 0.0011 28.5 4.4 75 91-170 63-147 (188)
90 2l6l_A DNAJ homolog subfamily 38.3 13 0.00045 30.7 1.8 37 269-312 109-145 (155)
91 1pqv_S STP-alpha, transcriptio 36.2 18 0.00062 33.8 2.6 39 272-312 268-308 (309)
92 2ct7_A Ring finger protein 31; 35.6 22 0.00075 27.0 2.6 29 275-313 28-56 (86)
93 2kdx_A HYPA, hydrogenase/ureas 35.5 13 0.00045 29.8 1.3 15 273-287 91-105 (119)
94 2d74_B Translation initiation 34.1 20 0.00067 30.9 2.3 35 273-314 105-139 (148)
95 3lpe_B DNA-directed RNA polyme 33.5 17 0.00057 27.0 1.5 19 274-292 15-33 (59)
96 3cw2_K Translation initiation 33.3 20 0.00067 30.5 2.1 40 266-312 97-136 (139)
97 2pfx_A Uncharacterized peroxid 33.2 37 0.0013 28.3 3.8 75 91-170 66-150 (191)
98 1s24_A Rubredoxin 2; electron 32.5 24 0.00082 28.1 2.4 36 271-309 34-77 (87)
99 1nee_A EIF-2-beta, probable tr 31.9 14 0.00048 31.4 1.0 30 274-310 104-133 (138)
100 3na7_A HP0958; flagellar bioge 31.6 16 0.00055 32.7 1.4 41 270-315 196-237 (256)
101 2e9h_A EIF-5, eukaryotic trans 31.3 20 0.00067 31.2 1.8 41 273-318 104-144 (157)
102 2akl_A PHNA-like protein PA012 30.1 25 0.00085 30.3 2.2 27 273-310 28-54 (138)
103 2k5c_A Uncharacterized protein 29.7 19 0.00065 29.1 1.3 16 298-313 6-21 (95)
104 2cor_A Pinch protein; LIM doma 29.5 38 0.0013 24.6 2.9 36 272-311 15-52 (79)
105 3h99_A Methionyl-tRNA syntheta 29.2 18 0.00063 35.6 1.4 10 272-281 155-164 (560)
106 2kv1_A Methionine-R-sulfoxide 28.9 28 0.00097 29.4 2.3 39 274-312 22-82 (124)
107 3k1f_M Transcription initiatio 28.8 24 0.00082 32.0 2.0 39 266-311 15-53 (197)
108 2oyo_A Uncharacterized peroxid 28.7 55 0.0019 27.5 4.1 75 91-170 71-155 (196)
109 1wig_A KIAA1808 protein; LIM d 28.4 37 0.0013 24.4 2.6 34 274-311 7-42 (73)
110 2kn9_A Rubredoxin; metalloprot 27.8 32 0.0011 27.0 2.3 35 272-309 27-69 (81)
111 3r8s_0 50S ribosomal protein L 27.6 17 0.00059 26.4 0.7 12 272-283 27-38 (56)
112 2prr_A Alkylhydroperoxidase AH 26.9 43 0.0015 28.2 3.2 75 91-170 67-151 (197)
113 2avu_E Flagellar transcription 26.7 26 0.00088 31.4 1.8 33 269-309 131-163 (192)
114 2pzi_A Probable serine/threoni 26.2 34 0.0012 33.8 2.7 37 272-314 34-70 (681)
115 2co8_A NEDD9 interacting prote 25.6 47 0.0016 24.3 2.8 36 273-311 16-53 (82)
116 1wd2_A Ariadne-1 protein homol 25.5 38 0.0013 24.6 2.2 30 273-312 7-38 (60)
117 3mhs_C SAGA-associated factor 25.0 54 0.0018 26.8 3.2 43 266-311 33-81 (99)
118 2y6e_A Ubiquitin carboxyl-term 24.8 29 0.001 31.4 1.9 25 299-323 230-254 (367)
119 1ryq_A DNA-directed RNA polyme 24.2 24 0.00083 27.1 1.0 13 271-283 22-34 (69)
120 1zso_A Hypothetical protein; s 23.5 31 0.0011 30.0 1.7 45 269-313 34-83 (164)
121 3m1m_A ORF904; primase, polyme 23.2 29 0.00098 33.7 1.5 68 107-204 209-277 (335)
122 2f9i_B Acetyl-coenzyme A carbo 22.7 12 0.00041 34.7 -1.2 37 273-318 31-67 (285)
123 2g2k_A EIF-5, eukaryotic trans 22.4 24 0.00081 31.1 0.7 42 273-319 97-138 (170)
124 1x64_A Alpha-actinin-2 associa 22.1 37 0.0013 25.1 1.6 36 272-311 25-62 (89)
125 3g5o_A Uncharacterized protein 21.7 84 0.0029 24.9 3.8 48 116-172 46-93 (108)
126 3p8b_A DNA-directed RNA polyme 21.3 30 0.001 27.4 1.0 16 274-289 37-54 (81)
127 3qt1_I DNA-directed RNA polyme 20.9 21 0.0007 30.0 0.0 36 272-309 92-129 (133)
128 1x3h_A Leupaxin; paxillin fami 20.7 37 0.0013 24.3 1.4 35 273-311 16-52 (80)
129 3v2d_5 50S ribosomal protein L 20.6 29 0.00098 25.7 0.7 20 273-307 31-50 (60)
130 1x6a_A LIMK-2, LIM domain kina 20.5 67 0.0023 23.0 2.7 34 274-311 17-52 (81)
131 2gmg_A Hypothetical protein PF 20.4 74 0.0025 26.1 3.2 45 254-310 50-94 (105)
132 1wyh_A SLIM 2, skeletal muscle 20.0 53 0.0018 22.8 2.1 35 273-311 6-44 (72)
133 1nyp_A Pinch protein; LIM doma 20.0 42 0.0014 23.2 1.5 35 273-311 6-42 (66)
No 1
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=93.54 E-value=0.058 Score=51.60 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=22.6
Q ss_pred HHHHhhhc-CCCccChHHHHHHHHHHhh
Q 020384 148 EASMAYVA-GKPIMSDEEYDKLKQKLKM 174 (327)
Q Consensus 148 EA~~AY~s-GkPimsDeeFD~LK~kLk~ 174 (327)
++-.+||. ++|+|||+|||+|..+|+.
T Consensus 15 ~~~~~YY~~d~p~IsD~eYD~L~~eL~~ 42 (322)
T 3uq8_A 15 QYEYEYHVLDNPSVPDSEYDRLFHQLKA 42 (322)
T ss_dssp HHHHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 34557886 9999999999999999865
No 2
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=92.72 E-value=0.082 Score=50.54 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=21.3
Q ss_pred HHhhhc-CCCccChHHHHHHHHHHhh
Q 020384 150 SMAYVA-GKPIMSDEEYDKLKQKLKM 174 (327)
Q Consensus 150 ~~AY~s-GkPimsDeeFD~LK~kLk~ 174 (327)
-.+||. |+|+|||+|||+|..+|+.
T Consensus 19 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 44 (318)
T 3jsl_A 19 SYEYYVEDNPSVPDSEYDKLLHELIK 44 (318)
T ss_dssp HHHHHTSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 456775 9999999999999998864
No 3
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=92.53 E-value=0.022 Score=53.68 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=3.8
Q ss_pred HHHhhh-cCCCccChHHHHHHHHHHhh
Q 020384 149 ASMAYV-AGKPIMSDEEYDKLKQKLKM 174 (327)
Q Consensus 149 A~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (327)
+-.+|| .|+|+|||+|||.|..+|+.
T Consensus 15 ~~~~YY~~~~p~IsD~eYD~L~~eL~~ 41 (305)
T 4glw_A 15 YATEYYTSDNPSVSDSEYDRLYRELVE 41 (305)
T ss_dssp ----------------------CHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 355777 59999999999999998864
No 4
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=92.36 E-value=0.058 Score=50.53 Aligned_cols=52 Identities=23% Similarity=0.504 Sum_probs=36.2
Q ss_pred HHHHHHHhhhccceeeecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEeccce
Q 020384 256 LSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTR 317 (327)
Q Consensus 256 ~a~~Lt~l~~~D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R 317 (327)
.|..||..|+ +=.+.|||||....+=| ++|......-|++|....+.-++.-
T Consensus 22 ~aRVLTE~Wv----~~n~yCPnCG~~~l~~f------~nN~PVaDF~C~~C~EeyELKSk~~ 73 (257)
T 4esj_A 22 KARILTEDWV----YRQSYCPNCGNNPLNHF------ENNRPVADFYCNHCSEEFELKSKKG 73 (257)
T ss_dssp HHHHHHHHHH----HHHCCCTTTCCSSCEEC----------CCCEEECTTTCCEEEEEEEES
T ss_pred eehhhhHHHH----HHCCcCCCCCChhhhhc------cCCCcccccccCCcchhheeccccC
Confidence 3455666665 44578999999766444 6666778899999999999987653
No 5
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=91.80 E-value=0.12 Score=49.60 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=22.1
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhhc
Q 020384 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (327)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~~ 175 (327)
-.+|| .|+|+|||+|||+|..+|+.-
T Consensus 28 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 54 (328)
T 1zau_A 28 QFRYYVRDAPIISDAEFDELLRRLEAL 54 (328)
T ss_dssp HHHHTTTCCCSSCTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 44677 699999999999999999753
No 6
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=91.70 E-value=0.13 Score=49.46 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.8
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 020384 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (327)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (327)
-.+|| .|+|+|||+|||+|..+|+.
T Consensus 26 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 51 (332)
T 1ta8_A 26 SHEYYVKDQPSVEDYVYDRLYKELVD 51 (332)
T ss_dssp HHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 44676 69999999999999999875
No 7
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=91.61 E-value=0.076 Score=47.22 Aligned_cols=34 Identities=29% Similarity=0.672 Sum_probs=23.1
Q ss_pred eeeecCCCCCcc-ccceeccccccccCCCCccceeCCCCCceeEE
Q 020384 269 LILKGPCPNCGT-ENVSFFGTILSISSGGTTNTINCSNCGTTMVY 312 (327)
Q Consensus 269 liLKGpCPNCGe-Ev~aFfGtilsv~s~~~~~~~kChvC~t~L~f 312 (327)
..-+++||+||- .-+.||. . + ...||+||..-.+
T Consensus 11 ~~~~~~CP~Cg~~d~~~~~~-----d--g---~~~C~~Cg~~~~~ 45 (255)
T 1nui_A 11 FLYHIPCDNCGSSDGNSLFS-----D--G---HTFCYVCEKWTAG 45 (255)
T ss_dssp EEEEECCSSSCCSSCEEEET-----T--S---CEEETTTCCEEC-
T ss_pred eecCCcCCCCCCCCCceEeC-----C--C---CeecccCCCcCCC
Confidence 445899999997 4455551 1 1 3999999977544
No 8
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=91.60 E-value=0.12 Score=49.28 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=21.7
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 020384 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (327)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (327)
-.+|| .|+|+|||+|||+|..+|+.
T Consensus 21 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 46 (318)
T 1b04_A 21 GYEYYVLDRPSVPDAEYDRLMQELIA 46 (318)
T ss_dssp HHHHHTTCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 44676 69999999999999999874
No 9
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.86 E-value=0.25 Score=37.69 Aligned_cols=41 Identities=29% Similarity=0.650 Sum_probs=32.6
Q ss_pred eeeecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEecccee
Q 020384 269 LILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRL 318 (327)
Q Consensus 269 liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R~ 318 (327)
--++--||.|+++...| + .+...+.|.+|++.|.--+..+.
T Consensus 12 ~Fm~VkCp~C~~~q~VF-------S--ha~t~V~C~~Cgt~L~~PTGGKa 52 (63)
T 3j20_W 12 RFLRVKCIDCGNEQIVF-------S--HPATKVRCLICGATLVEPTGGKG 52 (63)
T ss_dssp CEEEEECSSSCCEEEEE-------S--SCSSCEECSSSCCEEEECCSSSC
T ss_pred cEEEEECCCCCCeeEEE-------e--cCCeEEEccCcCCEEecCCCCcE
Confidence 45677899999999988 2 36788999999999987764443
No 10
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=90.70 E-value=0.13 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.0
Q ss_pred HHHhhh-cCCCccChHHHHHHHHHHhh
Q 020384 149 ASMAYV-AGKPIMSDEEYDKLKQKLKM 174 (327)
Q Consensus 149 A~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (327)
+-.+|| .|+|+|||+|||+|..+|+.
T Consensus 18 ~~~~Yy~~~~p~IsD~eYD~L~~eL~~ 44 (586)
T 4glx_A 18 HEYLYHVMDAPEIPDAEYDRLMRELRE 44 (586)
T ss_dssp HHHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 355687 59999999999999999874
No 11
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=90.60 E-value=0.22 Score=38.28 Aligned_cols=39 Identities=28% Similarity=0.640 Sum_probs=31.6
Q ss_pred eecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEecccee
Q 020384 271 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRL 318 (327)
Q Consensus 271 LKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R~ 318 (327)
|+--||.|+.+...| + .+...+.|.+|++.|.--+..+.
T Consensus 6 m~VKCp~C~niq~VF-------S--hA~tvV~C~~Cg~~L~~PTGGKA 44 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIF-------D--HPSTIVKCIICGRTVAEPTGGKG 44 (66)
T ss_dssp EEEECTTTCCEEEEE-------S--SCSSCEECSSSCCEEEECCSSSC
T ss_pred EEEECCCCCCceEEE-------e--cCceEEEcccCCCEEeecCCcce
Confidence 677899999999988 2 36778999999999987764443
No 12
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=88.97 E-value=0.23 Score=35.64 Aligned_cols=38 Identities=26% Similarity=0.632 Sum_probs=24.7
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
.-+||.||...-.||---.-.+....+--.+|.+||..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 57899999977777632211122234556899999975
No 13
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=87.64 E-value=0.16 Score=45.83 Aligned_cols=54 Identities=24% Similarity=0.522 Sum_probs=34.5
Q ss_pred HHHHHHHHh-hhccceeeecCCCCCccccceeccccccccCC-CCccceeCCCCCcee
Q 020384 255 YLSQSLTKL-IVRESLILKGPCPNCGTENVSFFGTILSISSG-GTTNTINCSNCGTTM 310 (327)
Q Consensus 255 ~~a~~Lt~l-~~~D~liLKGpCPNCGeEv~aFfGtilsv~s~-~~~~~~kChvC~t~L 310 (327)
.+.+.|+.. -++|..=|+=.||.|++++- |+++...... -..+...|++|+..+
T Consensus 4 ~lesqi~DeeRfr~c~~l~l~Cp~C~~~~~--F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 4 PLETTITDVERFKDTVTLELSCPSCDKRFP--FGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp -------CTTTTTTCCCEEEECTTTCCEEE--ECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred CccccCCHHHHhCcCceeEEECCCCCCccC--CCCcccCCCcccccccccCCCCCCcC
Confidence 455666665 78999999999999999864 5665432111 256778899999854
No 14
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=87.24 E-value=0.097 Score=49.33 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=3.6
Q ss_pred hHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 020384 96 GELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (327)
Q Consensus 96 ge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (327)
.++...--.+=.+||..+.|++||+|||.|.+||.
T Consensus 6 ~~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~eL~ 40 (305)
T 4glw_A 6 NELVALLNRYATEYYTSDNPSVSDSEYDRLYRELV 40 (305)
T ss_dssp HC-----------------------------CHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 34444444555689999999999999999998864
No 15
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=86.86 E-value=0.76 Score=36.53 Aligned_cols=44 Identities=18% Similarity=0.471 Sum_probs=34.8
Q ss_pred eeeecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEeccceeeec
Q 020384 269 LILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLITL 321 (327)
Q Consensus 269 liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R~itl 321 (327)
--|+--||.|+++...| + .+...+.|.+|++.|.--+..++...
T Consensus 29 ~Fm~VkCp~C~n~q~VF-------S--hA~t~V~C~~Cg~~L~~PTGGKA~l~ 72 (81)
T 2xzm_6 29 YFMDVKCAQCQNIQMIF-------S--NAQSTIICEKCSAILCKPTGGKVQIQ 72 (81)
T ss_dssp CEEEEECSSSCCEEEEE-------T--TCSSCEECSSSCCEEEEECSSCEEEC
T ss_pred cEEEeECCCCCCeeEEE-------e--cCccEEEccCCCCEEeecCCCCeEec
Confidence 44778899999999888 2 36778999999999988875555433
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=86.29 E-value=0.37 Score=33.53 Aligned_cols=29 Identities=24% Similarity=0.710 Sum_probs=21.4
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCCceeE
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
.||+||.+...| + ....+..|..||..+.
T Consensus 7 ~CP~C~~~~l~~---d------~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 7 VCPACESAELIY---D------PERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCTTTSCCCEEE---E------TTTTEEEESSSCCBCC
T ss_pred eCcCCCCcceEE---c------CCCCeEECcccCCccc
Confidence 599999865555 1 2567899999997654
No 17
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=86.15 E-value=0.63 Score=37.07 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=34.0
Q ss_pred cceeeecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEeccceee
Q 020384 267 ESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLI 319 (327)
Q Consensus 267 D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R~i 319 (327)
|---++--||.|+++...| + .+...+.|.+|++.|.--+..+..
T Consensus 29 nS~Fm~VkCp~C~~~q~VF-------S--ha~t~V~C~~Cg~~L~~PTGGKa~ 72 (82)
T 3u5c_b 29 RSYFLDVKCPGCLNITTVF-------S--HAQTAVTCESCSTILCTPTGGKAK 72 (82)
T ss_dssp CCCEEEEECTTSCSCEEEE-------S--BCSSCCCCSSSCCCCEECCSSBCE
T ss_pred CCcEEEEECCCCCCeeEEE-------e--cCCeEEEccccCCEEeccCCCCeE
Confidence 3345777899999999988 2 367789999999999877655443
No 18
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=85.85 E-value=0.64 Score=44.45 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhh
Q 020384 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129 (327)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL 129 (327)
+.++...--.+=.+||..+.|++||+|||.|..||
T Consensus 6 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL 40 (322)
T 3uq8_A 6 LDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQL 40 (322)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 34455555566678999999999999999998875
No 19
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=85.76 E-value=0.46 Score=49.41 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.6
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 020384 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (327)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (327)
-.+|| .++|+|||+|||+|.++|+.
T Consensus 19 ~~~YY~~d~p~isD~eYD~L~~eL~~ 44 (671)
T 2owo_A 19 EYLYHVMDAPEIPDAEYDRLMRELRE 44 (671)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 45666 68999999999999999875
No 20
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=85.40 E-value=0.66 Score=44.41 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 020384 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (327)
Q Consensus 94 slge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (327)
-+.++...--.+=.+||..+.|++||+|||.|..+|.
T Consensus 16 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 52 (328)
T 1zau_A 16 QWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLE 52 (328)
T ss_dssp THHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4566666666666789999999999999999999864
No 21
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=85.38 E-value=0.66 Score=44.22 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 020384 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (327)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (327)
+.++...--.+=.+||..+.|++||+|||.|..+|.
T Consensus 10 ~~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 45 (318)
T 1b04_A 10 AAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELI 45 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555556678999999999999999999964
No 22
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=85.27 E-value=0.72 Score=44.06 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhh
Q 020384 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129 (327)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL 129 (327)
+.++...--++=.+||..+.|++||+|||.|..||
T Consensus 8 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL 42 (318)
T 3jsl_A 8 VNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHEL 42 (318)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 44555555556667888999999999999998875
No 23
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=84.98 E-value=0.74 Score=44.18 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 020384 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (327)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (327)
+.++...--.+=.+||..+.|++||+|||.|..+|.
T Consensus 15 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 50 (332)
T 1ta8_A 15 AQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELV 50 (332)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 455555555556678999999999999999999864
No 24
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=84.86 E-value=0.62 Score=47.71 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 020384 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (327)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (327)
+.++...--.+=.+||..+.|++||+|||.|.+||.
T Consensus 8 i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~ 43 (586)
T 4glx_A 8 LTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (586)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555666789999999999999999998874
No 25
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.78 E-value=0.42 Score=34.26 Aligned_cols=31 Identities=26% Similarity=0.593 Sum_probs=22.6
Q ss_pred eeeecCCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 269 LILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 269 liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
.-+.--||.||..++-. . ...+..|..||-.
T Consensus 16 ~~~~k~CP~CG~~~fm~--~--------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 16 IRKNKFCPRCGPGVFMA--D--------HGDRWACGKCGYT 46 (50)
T ss_dssp ECSSEECSSSCSSCEEE--E--------CSSEEECSSSCCE
T ss_pred EEecccCCCCCCceEEe--c--------CCCeEECCCCCCE
Confidence 44677899999988633 1 2367899999854
No 26
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=84.48 E-value=0.46 Score=36.41 Aligned_cols=41 Identities=24% Similarity=0.629 Sum_probs=28.5
Q ss_pred eeecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEe-ccceeeec
Q 020384 270 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYD-SNTRLITL 321 (327)
Q Consensus 270 iLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~-s~~R~itl 321 (327)
-+.=.|++||.++--= ....+.|..||..+.|- ++.|.+..
T Consensus 26 ~v~Y~C~~CG~~~e~~-----------~~d~irCp~CG~RILyK~R~~r~v~~ 67 (70)
T 1twf_L 26 TLKYICAECSSKLSLS-----------RTDAVRCKDCGHRILLKARTKRLVQF 67 (70)
T ss_dssp CCCEECSSSCCEECCC-----------TTSTTCCSSSCCCCCBCCCCSSCEEE
T ss_pred eEEEECCCCCCcceeC-----------CCCCccCCCCCceEeEecCCCccEEE
Confidence 3455799999996421 23456899999977777 56666543
No 27
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=84.41 E-value=0.42 Score=49.68 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.3
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhhc
Q 020384 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (327)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~~ 175 (327)
-.+|| .++|+|||+|||+|.++|+.-
T Consensus 21 ~~~YY~~d~p~isD~eYD~l~~eL~~l 47 (667)
T 1dgs_A 21 NYRYYVLADPEISDAEYDRLLRELKEL 47 (667)
T ss_dssp HHHHHTTCCCCSCSSSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 44677 699999999999999999853
No 28
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=83.22 E-value=0.61 Score=37.47 Aligned_cols=43 Identities=19% Similarity=0.462 Sum_probs=32.2
Q ss_pred cceeeecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEecccee
Q 020384 267 ESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRL 318 (327)
Q Consensus 267 D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R~ 318 (327)
|---++--||.|+.+...| + .+...+.|.+|++.|.--+..+.
T Consensus 31 nS~Fm~VkCp~C~~~~~VF-------S--hA~t~V~C~~CgtvL~~PTGGKa 73 (86)
T 3iz6_X 31 NSFFMDVKCQGCFNITTVF-------S--HSQTVVVCPGCQTVLCQPTGGKA 73 (86)
T ss_dssp --CEEEEECTTTCCEEEEE-------T--TCSSCCCCSSSCCCCSCCCSSSC
T ss_pred CCcEeEEECCCCCCeeEEE-------e--cCCcEEEccCCCCEeecCCCCCE
Confidence 4456777899999999988 2 36778999999999876554433
No 29
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=81.59 E-value=0.81 Score=33.41 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCCceeE
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
.||+||.+...| + ....+..|.+||..++
T Consensus 13 ~Cp~C~~~~lv~---D------~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 13 TCPNHPDAILVE---D------YRAGDMICPECGLVVG 41 (58)
T ss_dssp SBTTBSSSCCEE---C------SSSCCEECTTTCCEEC
T ss_pred cCcCCCCCceeE---e------CCCCeEEeCCCCCEEe
Confidence 599999876554 1 2567799999998774
No 30
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=80.02 E-value=0.24 Score=51.06 Aligned_cols=25 Identities=36% Similarity=0.709 Sum_probs=21.6
Q ss_pred HHhhh-cCCCccChHHHHHHHHHHhh
Q 020384 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (327)
Q Consensus 150 ~~AY~-sGkPimsDeeFD~LK~kLk~ 174 (327)
-.+|| .++|+|||+|||+|..+|+.
T Consensus 28 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 53 (615)
T 3sgi_A 28 QFRYYVRDAPIISDAEFDELLRRLEA 53 (615)
T ss_dssp HHHHHHHSCCCSSCCSSCSSSSHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 45787 79999999999999888864
No 31
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=78.48 E-value=0.67 Score=40.41 Aligned_cols=26 Identities=35% Similarity=0.613 Sum_probs=18.3
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
+.-|++||-- |-|+.. +. +||+||.+
T Consensus 155 ~~~C~~CG~~---~~g~~~-------p~--~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYV---HEGTGA-------PE--LCPACAHP 180 (191)
T ss_dssp EEEETTTCCE---EEEEEC-------CS--BCTTTCCB
T ss_pred eEEECCCCCE---eeCCCC-------CC--CCCCCcCC
Confidence 6779999954 335532 22 99999986
No 32
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=78.00 E-value=1.5 Score=45.60 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 020384 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (327)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (327)
+.++...--.+=.+||..+.|++||+|||.|..||.
T Consensus 8 ~~~L~~~l~~~~~~YY~~d~p~isD~eYD~L~~eL~ 43 (671)
T 2owo_A 8 LTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (671)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555555566789999999999999999999875
No 33
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=76.68 E-value=1.5 Score=33.12 Aligned_cols=40 Identities=25% Similarity=0.728 Sum_probs=29.7
Q ss_pred eeecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEe-ccceeee
Q 020384 270 ILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYD-SNTRLIT 320 (327)
Q Consensus 270 iLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~-s~~R~it 320 (327)
-++=-|..||.||-- + ....++|..||..+.|- ++.|.+.
T Consensus 19 ~v~Y~C~~Cg~~~~l--------~---~~~~iRC~~CG~RILyK~Rt~r~~~ 59 (63)
T 3h0g_L 19 TMIYLCADCGARNTI--------Q---AKEVIRCRECGHRVMYKMRTKRMVQ 59 (63)
T ss_dssp CCCCBCSSSCCBCCC--------C---SSSCCCCSSSCCCCCBCCCCCCCEE
T ss_pred CeEEECCCCCCeeec--------C---CCCceECCCCCcEEEEEecCCceEE
Confidence 356679999999861 2 24568999999999998 4555544
No 34
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=74.84 E-value=1.9 Score=41.78 Aligned_cols=58 Identities=19% Similarity=0.406 Sum_probs=35.7
Q ss_pred HHHHHhhhccc--eeeecCCCCCcccc--cee-cccccccc-----CCCCccceeCCCCCceeEEecc
Q 020384 258 QSLTKLIVRES--LILKGPCPNCGTEN--VSF-FGTILSIS-----SGGTTNTINCSNCGTTMVYDSN 315 (327)
Q Consensus 258 ~~Lt~l~~~D~--liLKGpCPNCGeEv--~aF-fGtilsv~-----s~~~~~~~kChvC~t~L~f~s~ 315 (327)
..|.+...+|+ -+.+-||+.||.+- ..+ .|..-+-. +.......+|+.||....|-+.
T Consensus 103 ~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPRY 170 (335)
T 1x3z_A 103 KELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRY 170 (335)
T ss_dssp HHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEE
T ss_pred HHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccccCCc
Confidence 44444444664 46789999999763 344 46643221 1122444679999999988543
No 35
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=74.39 E-value=1.6 Score=45.41 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 020384 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (327)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (327)
+.++...--++=.+||..+.|++||+|||.|..||.
T Consensus 10 ~~~L~~~l~~~~~~YY~~d~p~isD~eYD~l~~eL~ 45 (667)
T 1dgs_A 10 INELRDLIRYHNYRYYVLADPEISDAEYDRLLRELK 45 (667)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 444555555556689999999999999999999875
No 36
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=70.79 E-value=1.7 Score=34.23 Aligned_cols=31 Identities=32% Similarity=0.670 Sum_probs=24.4
Q ss_pred eecCCCCCccccceeccccccccCCCCccceeCCCCCc
Q 020384 271 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 308 (327)
Q Consensus 271 LKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t 308 (327)
..|.||-|++..-+|. |. ..++...|+.||.
T Consensus 36 ~~~~CPfh~e~~pSf~-----V~--~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 36 YFGLCPFHGEKTPSFS-----VS--PEKQIFHCFGCGA 66 (103)
T ss_dssp EEECCSSSCCSSCCEE-----EE--TTTTEEEETTTCC
T ss_pred EEEECCCCCCCCCcEE-----EE--cCCCEEEECCCCC
Confidence 4689999999887873 32 2567899999995
No 37
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=69.70 E-value=2.8 Score=30.48 Aligned_cols=30 Identities=27% Similarity=0.691 Sum_probs=21.9
Q ss_pred eecCCCCCccccceeccccccccCCCCccceeCCCCCcee
Q 020384 271 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 310 (327)
Q Consensus 271 LKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L 310 (327)
+.--||.||..++ +.. ..++..|..|+-..
T Consensus 17 ~~~fCPkCG~~~~--ma~--------~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVF--LAE--------HADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCC--CEE--------CSSEEECTTTCCCE
T ss_pred ccccCcCCCCcee--Eec--------cCCEEECCCCCCEE
Confidence 4678999999773 321 13589999999885
No 38
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=69.12 E-value=3.3 Score=29.53 Aligned_cols=38 Identities=21% Similarity=0.481 Sum_probs=25.2
Q ss_pred ecCCCCCccccceeccccccccCCC--CccceeCCCCCceeE
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGG--TTNTINCSNCGTTMV 311 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~--~~~~~kChvC~t~L~ 311 (327)
.-.||+||.+.-.||-. -..|.. .+--+.|.+||-.-.
T Consensus 9 ~~~Cp~Cg~~~a~f~q~--Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQV--QTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEE--CSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEe--cCcCCCCCceEEEEcCCCCCeEE
Confidence 45899999988888832 223332 233479999986543
No 39
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=68.91 E-value=2.2 Score=28.02 Aligned_cols=22 Identities=27% Similarity=0.673 Sum_probs=17.8
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
.||+||.-||+. +..|..|+++
T Consensus 8 ~C~~C~~~Nfa~--------------R~~C~~C~~p 29 (33)
T 2k1p_A 8 QCKTCSNVNWAR--------------RSECNMCNTP 29 (33)
T ss_dssp BCSSSCCBCCTT--------------CSBCSSSCCB
T ss_pred ccCCCCCccccc--------------cccccccCCc
Confidence 499999998876 4678888875
No 40
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=68.74 E-value=1.5 Score=45.20 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHhhhHhhhh
Q 020384 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (327)
Q Consensus 95 lge~E~~fl~Al~~fY~~gk~~~sdeefd~LkEeL~ 130 (327)
+.++.+.--.+=.+||..+.|++||+|||.|..||.
T Consensus 17 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 52 (615)
T 3sgi_A 17 WQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLE 52 (615)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSSCCSSCSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 445555555555788989999999999999977763
No 41
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=68.35 E-value=3.2 Score=35.24 Aligned_cols=36 Identities=19% Similarity=0.539 Sum_probs=28.0
Q ss_pred ceeeecCCCC--Cccccc-eeccccccccCCCCccceeCCCCCceeEEec
Q 020384 268 SLILKGPCPN--CGTENV-SFFGTILSISSGGTTNTINCSNCGTTMVYDS 314 (327)
Q Consensus 268 ~liLKGpCPN--CGeEv~-aFfGtilsv~s~~~~~~~kChvC~t~L~f~s 314 (327)
..-+.-.||+ ||..|| |. -.++.-|..|+-...|++
T Consensus 114 ~~~~~~~c~~~~cg~g~fma~-----------h~~r~~cgkc~~t~~~~~ 152 (152)
T 3u5c_f 114 VTKLRRECSNPTCGAGVFLAN-----------HKDRLYCGKCHSVYKVNA 152 (152)
T ss_dssp EECCSCBCCSTTSCSSSBEEE-----------CSSCEEESSSSSCCEECC
T ss_pred EEECcCcCCCccCCCceEecc-----------cCCCcccCCCceEEEecC
Confidence 3557889999 999887 32 225889999999988874
No 42
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=68.28 E-value=2 Score=33.72 Aligned_cols=30 Identities=30% Similarity=0.680 Sum_probs=21.2
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCceeE
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
+=.||+||.+ ..|.. .+..-+|..|+....
T Consensus 27 ~y~Cp~CG~~--~v~r~--------atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGED--RVDRQ--------GTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCE--EEEEE--------ETTEEEETTTCCEEE
T ss_pred cCcCCCCCCc--ceecc--------CCCeEECCCCCCEec
Confidence 5689999984 33322 345789999998754
No 43
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=65.76 E-value=1.7 Score=42.77 Aligned_cols=31 Identities=29% Similarity=0.845 Sum_probs=17.8
Q ss_pred eecCCCCCcccc--------ceeccccccccCCCCccceeCCCCCc
Q 020384 271 LKGPCPNCGTEN--------VSFFGTILSISSGGTTNTINCSNCGT 308 (327)
Q Consensus 271 LKGpCPNCGeEv--------~aFfGtilsv~s~~~~~~~kChvC~t 308 (327)
|...|||||+.- --|||.|+ -....|..||-
T Consensus 11 ~~s~Cp~C~~~g~t~~~~~~IP~F~eVi-------i~Sf~C~~CGy 49 (404)
T 2qkd_A 11 IESLCMNCYRNGTTRLLLTKIPFFREII-------VSSFSCEHCGW 49 (404)
T ss_dssp CEEECTTTSSEEEEEEEEEEETTTEEEE-------EEEEECTTTCC
T ss_pred ccccCCCCCCCceEEEEEEcCCCCceEE-------EEEEECCCCCC
Confidence 455677777422 23566653 23567777774
No 44
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=65.40 E-value=2.6 Score=37.24 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=18.9
Q ss_pred eecCCCCCccccceeccccccccCCCCccceeCCCCCcee
Q 020384 271 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 310 (327)
Q Consensus 271 LKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L 310 (327)
-+.-|++||-- |-| + .+ -+|++||.+-
T Consensus 170 ~~~~C~~CG~i---~~g-~-------~p--~~CP~C~~~k 196 (202)
T 1yuz_A 170 KFHLCPICGYI---HKG-E-------DF--EKCPICFRPK 196 (202)
T ss_dssp CEEECSSSCCE---EES-S-------CC--SBCTTTCCBG
T ss_pred cEEEECCCCCE---EcC-c-------CC--CCCCCCCCCh
Confidence 47889999954 323 2 22 6999999863
No 45
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=65.31 E-value=2.5 Score=27.51 Aligned_cols=22 Identities=27% Similarity=0.753 Sum_probs=17.1
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
.||+||.-||+. +..|..|++.
T Consensus 7 ~C~~C~~~Nfa~--------------r~~C~~C~~p 28 (32)
T 2lk0_A 7 LCNKCCLNNFRK--------------RLKCFRCGAD 28 (32)
T ss_dssp ECTTTCCEEETT--------------CCBCTTTCCB
T ss_pred CcCcCcCCcChh--------------cceecCCCCc
Confidence 499999988875 4678888864
No 46
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=64.97 E-value=2.7 Score=32.31 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=20.8
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCCceeEEec
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 314 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s 314 (327)
-|| ||.-.++= ...-..+|+ ||+.+.++.
T Consensus 6 ~C~-C~~~~~~~----------~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 6 RCD-CGRALYSR----------EGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EET-TSCCEEEE----------TTCSEEEET-TTEEEECCS
T ss_pred ECC-CCCEEEEc----------CCCcEEECC-CCCeeeece
Confidence 389 99763321 256678998 999998874
No 47
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=64.67 E-value=3 Score=32.56 Aligned_cols=31 Identities=19% Similarity=0.504 Sum_probs=23.2
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCcee
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 310 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L 310 (327)
.-.||+||..|..- .........|..|+..+
T Consensus 5 ~~~c~~c~~~n~~p--------~~~~~~~~~~~~~~~~~ 35 (148)
T 3p2a_A 5 NTVCTACMATNRLP--------EERIDDGAKCGRCGHSL 35 (148)
T ss_dssp EEECTTTCCEEEEE--------SSCSCSCCBCTTTCCBT
T ss_pred EEECcccccccCCC--------CcccccCCcchhcCCcc
Confidence 44699999987433 44566778899999876
No 48
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=63.68 E-value=4.7 Score=31.91 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=25.3
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCCceeEE
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 312 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f 312 (327)
=.||.|+.|.-.=..- ........+.|.+||...++
T Consensus 24 F~CPfCnh~~sV~vki----dk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKM----DRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCCTTTCCSSCEEEEE----ETTTTEEEEEESSSCCEEEE
T ss_pred EcCCCCCCCCeEEEEE----EccCCEEEEEcccCCCeEEe
Confidence 3799999996433322 22345789999999986655
No 49
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=63.50 E-value=3.2 Score=40.92 Aligned_cols=37 Identities=30% Similarity=0.750 Sum_probs=24.1
Q ss_pred ccceeeecCCCCCccccce--------eccccccccCCCCccceeCCCCCce
Q 020384 266 RESLILKGPCPNCGTENVS--------FFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 266 ~D~liLKGpCPNCGeEv~a--------FfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
+...-+...|||||++-.. |||.++ -....|..||-.
T Consensus 214 ~ev~~~~s~Cp~C~~~~~t~~~~~~IP~F~eVi-------ims~~C~~CGyr 258 (404)
T 2qkd_A 214 NEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVI-------IMATNCENCGHR 258 (404)
T ss_dssp CCEEEEEECCTTTCCTTCEEEEEECCTTSCCEE-------EEEEECSSSCCE
T ss_pred cceeeecccCccCCCccEEEEEEEeCCCCCcEE-------EEEEECCCCCCc
Confidence 4456677888888876543 566654 345778888743
No 50
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=62.53 E-value=3.4 Score=38.73 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=22.6
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCceeE
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
...||+||..+-...-+ ....+.-|..||..++
T Consensus 21 ~~~Cp~Cg~~~~~iv~D-------~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVER-------FSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCC-------SSSCSCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEE-------CCCCCEecCCCCeEcc
Confidence 45699999974222111 2566889999999884
No 51
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=62.30 E-value=3 Score=32.93 Aligned_cols=35 Identities=20% Similarity=0.629 Sum_probs=20.7
Q ss_pred CCCCCccccc---------eeccccccccCCCCccceeCCCCCceeE
Q 020384 274 PCPNCGTENV---------SFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 274 pCPNCGeEv~---------aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
-||.||.++. .|=|....|. ..+-..|.+||..+.
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~---~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLK---GIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEE---EEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEEC---CCceeECCCCCCEee
Confidence 4999998743 2222222221 125678999998753
No 52
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=62.13 E-value=5.1 Score=27.63 Aligned_cols=22 Identities=18% Similarity=0.691 Sum_probs=16.7
Q ss_pred ccceeCCCCCc-eeEEecc-ceee
Q 020384 298 TNTINCSNCGT-TMVYDSN-TRLI 319 (327)
Q Consensus 298 ~~~~kChvC~t-~L~f~s~-~R~i 319 (327)
.+..+|++|+. .|+||.. ..+|
T Consensus 3 ~~~~~CP~C~~~~l~~d~~~gelv 26 (50)
T 1pft_A 3 NKQKVCPACESAELIYDPERGEIV 26 (50)
T ss_dssp SSCCSCTTTSCCCEEEETTTTEEE
T ss_pred CccEeCcCCCCcceEEcCCCCeEE
Confidence 35678999999 9999965 4443
No 53
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=60.38 E-value=8.9 Score=36.30 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=35.0
Q ss_pred HHHHHhhhccc--eeeecCCCCCccccceeccc-cc-c-cc---CCCCccceeCCCCCceeEEecc
Q 020384 258 QSLTKLIVRES--LILKGPCPNCGTENVSFFGT-IL-S-IS---SGGTTNTINCSNCGTTMVYDSN 315 (327)
Q Consensus 258 ~~Lt~l~~~D~--liLKGpCPNCGeEv~aFfGt-il-s-v~---s~~~~~~~kChvC~t~L~f~s~ 315 (327)
..|.+...+++ -.++-||++||.+.... |. .- + .+ +........|++|+....|-+.
T Consensus 65 ~~ll~wFk~~fF~~~~~P~c~~C~~~~~~~-g~~~~~~~~e~~~~a~~vE~y~c~~c~~~~~~pr~ 129 (295)
T 2f4m_A 65 LELLHWFKEEFFRWVNNIVCSKCGGETRSR-DEALLPNDDELKWGAKNVENHYCDACQLSNRFPRY 129 (295)
T ss_dssp HHHHHHHHHTTCEECSSCCCTTTCCCCEEC-SSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECC
T ss_pred HHHHHHHHhcCCEEeCCCCCcccCCccccc-CCCCCCChhHhhcccchhheeeccccCceeecCCC
Confidence 44444444555 47889999999887643 43 00 0 01 2233455789999998887643
No 54
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=59.87 E-value=3.3 Score=39.55 Aligned_cols=31 Identities=26% Similarity=0.687 Sum_probs=24.7
Q ss_pred eecCCCCCccccceeccccccccCCCCccceeCCCCCc
Q 020384 271 LKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 308 (327)
Q Consensus 271 LKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t 308 (327)
.+|.||-|++..-+|. |. ..++...|+.||.
T Consensus 33 ~~~~CPfh~ektpSf~-----V~--~~k~~~~CFgCg~ 63 (407)
T 2au3_A 33 YRTNCPFHPDDTPSFY-----VS--PSKQIFKCFGCGV 63 (407)
T ss_dssp EEECCSSSCCSSCCEE-----EE--TTTTEEEETTTCC
T ss_pred EEeeCcCCCCCCCeEE-----EE--CCCCEEEECCCCC
Confidence 6799999999988883 32 2457899999985
No 55
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=59.18 E-value=25 Score=28.73 Aligned_cols=66 Identities=18% Similarity=0.374 Sum_probs=50.2
Q ss_pred CccccChHHHhhhHhhhhhcCCeeEEeChhh-HHHHHH--HHhhhcCCCccChHHHHHH------H--HHHhhcCCceee
Q 020384 113 GKAVMSNEEFDNLKEELMWEGSSVVMLSSAE-QKFLEA--SMAYVAGKPIMSDEEYDKL------K--QKLKMEGSEIVV 181 (327)
Q Consensus 113 gk~~~sdeefd~LkEeL~weGSsvv~L~~~E-q~fLEA--~~AY~sGkPimsDeeFD~L------K--~kLk~~GS~VVv 181 (327)
+.+++.++.|..|+.+ ++.+. +++|.. ...||+|. |++++|+.- | ..-+..|.+|.-
T Consensus 18 ~TFvId~~~Y~kL~n~----------is~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~AhLakAl~~fs~~g~d~LY 85 (96)
T 3gzf_A 18 GTFVIDMRSYETLVNS----------TSLDRIKSYANSFNKYKYYTGS--MGEADYRMACYAHLGKALMDYSVSRNDKLY 85 (96)
T ss_dssp SCEEECHHHHHHHHTT----------TTHHHHHHHHHTHHHHHSCCSC--CCHHHHHHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred ceEEEccHHHHHHHhh----------cCHHHHHHHHHHHhhhccccCC--cchHHHHHHHHHHHHHHHHHHhccCCceee
Confidence 5678999999999987 44333 667766 45599996 899999753 1 344667889999
Q ss_pred ecCeeeecC
Q 020384 182 EGPRCSLRS 190 (327)
Q Consensus 182 k~PrCslr~ 190 (327)
.-|+||+-+
T Consensus 86 tPP~~Sv~S 94 (96)
T 3gzf_A 86 TPPTVSVNS 94 (96)
T ss_dssp CCCEEEEEC
T ss_pred CCCcccccC
Confidence 999999865
No 56
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=58.79 E-value=4.4 Score=33.86 Aligned_cols=34 Identities=18% Similarity=0.517 Sum_probs=22.4
Q ss_pred ccceeeecCCCCCccccceeccccccccCCCCccceeCCCCCceeE
Q 020384 266 RESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 266 ~D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
+....-.--|+.||.+--.+ .....|+.||..+.
T Consensus 126 ~~~~~~~y~C~~Cg~~~~~~------------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 126 KKVIKWRYVCIGCGRKFSTL------------PPGGVCPDCGSKVK 159 (165)
T ss_dssp SSCCCCCEEESSSCCEESSC------------CGGGBCTTTCCBEE
T ss_pred cccccEEEECCCCCCcccCC------------CCCCcCCCCCCcce
Confidence 34444456799999764332 22358999999864
No 57
>3vc8_A RNA-directed RNA polymerase; NEW fold, HOST membrane, multi-PASS membrane protein, cytopl hydrolase, viral protein; 2.00A {Murine hepatitis virus} PDB: 3vcb_A
Probab=57.91 E-value=24 Score=28.74 Aligned_cols=67 Identities=21% Similarity=0.447 Sum_probs=47.3
Q ss_pred cCccccChHHHhhhHhhhhhcCCeeEEeChh-hHHHHHH--HHhhhcCCCccChHHHHHH------HH--HHh-hcCCce
Q 020384 112 EGKAVMSNEEFDNLKEELMWEGSSVVMLSSA-EQKFLEA--SMAYVAGKPIMSDEEYDKL------KQ--KLK-MEGSEI 179 (327)
Q Consensus 112 ~gk~~~sdeefd~LkEeL~weGSsvv~L~~~-Eq~fLEA--~~AY~sGkPimsDeeFD~L------K~--kLk-~~GS~V 179 (327)
.+.++++++.|..|+.+ ++.+ =+++|.. ...||+|. |++.+|+.- |+ .-+ ..|.+|
T Consensus 12 ~~TFvId~~~Y~kL~ns----------is~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~ahLAkAl~~fs~~~g~dv 79 (94)
T 3vc8_A 12 LTTFMITKESYCKLKNS----------VSDVAFNRYLSLYNKYRYFSGK--MDTAAYREAACSQLAKAMETFNHNNGNDV 79 (94)
T ss_dssp TSCEEECHHHHHHHHHH----------SCHHHHHHHHHTHHHHHTCCSC--CCHHHHHHHHHHHHHHHHHHHHHHCSCCE
T ss_pred hceEEeccHHHHHHHhh----------cCHHHHHHHHHHHHhhccccCC--cchHHHHHHHHHHHHHHHHHhhhcCCCce
Confidence 36779999999999998 3333 3677766 45699996 899999853 22 334 668899
Q ss_pred eeecCeeeecC
Q 020384 180 VVEGPRCSLRS 190 (327)
Q Consensus 180 Vvk~PrCslr~ 190 (327)
.-.-|+||+-+
T Consensus 80 LYtPP~~Sv~s 90 (94)
T 3vc8_A 80 LYQPPTASVTT 90 (94)
T ss_dssp EECCSCC----
T ss_pred eeCCCcceeeh
Confidence 99999999865
No 58
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=54.72 E-value=5.5 Score=34.37 Aligned_cols=25 Identities=32% Similarity=0.736 Sum_probs=16.1
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
+--|||||--.. + ..+. +|++||.+
T Consensus 138 ~~~C~~CG~i~~---~--------~~p~--~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAV---D--------EAPE--YCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEE---S--------CCCS--BCTTTCCB
T ss_pred eeEeCCCCCeeC---C--------CCCC--CCCCCCCC
Confidence 344999995322 2 1232 99999975
No 59
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.11 E-value=4.4 Score=29.45 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=23.0
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEeccce
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTR 317 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R 317 (327)
+--||.||.. ..+.-.+|..||.. .++.+..
T Consensus 14 k~iCpkC~a~--------------~~~gaw~CrKCG~~-~lr~k~k 44 (51)
T 3j21_g 14 KYVCLRCGAT--------------NPWGAKKCRKCGYK-RLRPKAK 44 (51)
T ss_dssp EEECTTTCCE--------------ECTTCSSCSSSSSC-CCEEECC
T ss_pred CccCCCCCCc--------------CCCCceecCCCCCc-ccccccc
Confidence 4459999986 14566789999998 7776543
No 60
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=54.10 E-value=5.6 Score=36.43 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=25.0
Q ss_pred ccceeee----cCCCCCccccceeccccccccCCCCccceeCCCCCc
Q 020384 266 RESLILK----GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 308 (327)
Q Consensus 266 ~D~liLK----GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t 308 (327)
++.+-++ -|||.||+++..-. + +.+..+-|++|..
T Consensus 232 ~~~~~VygR~G~pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 232 QNELQVYGKTGEKCSRCGAEIQKIK-----V---AGRGTHFCPVCQQ 270 (271)
T ss_dssp GGGCSSTTCTTSBCTTTCCBCEEEE-----E---TTEEEEECTTTSC
T ss_pred cceEEEccCCCCCCCCCCCEeeEEE-----E---CCCceEECCCCCC
Confidence 3445566 37999999987542 1 3578889999975
No 61
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=52.73 E-value=5.7 Score=31.93 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=22.7
Q ss_pred cceeeecCCCCCccccceeccccccccCCCCccce-eCCCCCceeE
Q 020384 267 ESLILKGPCPNCGTENVSFFGTILSISSGGTTNTI-NCSNCGTTMV 311 (327)
Q Consensus 267 D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~-kChvC~t~L~ 311 (327)
+..-...-|++||.+.-. ..... .|+.||....
T Consensus 68 ~~~p~~~~C~~CG~~~e~------------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 68 VDEKVELECKDCSHVFKP------------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECCEEECSSSSCEECS------------CCSTTCCCSSSSSCCC
T ss_pred EeccceEEcCCCCCEEeC------------CCCCCCcCccccCCCc
Confidence 344567889999976332 23456 8999999843
No 62
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=52.55 E-value=6.3 Score=33.88 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=24.7
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEeccce
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTR 317 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R 317 (327)
.--|||||.+.-....... ... ......|+.||..++......
T Consensus 78 ~~~c~~~~~~~~~~~~~~~-~~~--~~~~~~c~~~g~~~~~~e~~~ 120 (166)
T 3ir9_A 78 TTKCSVCGYENKWTRRWKP-GEP--APAAGNCPKCGSSLEVTDVTD 120 (166)
T ss_dssp EEEESSSSCEEEEEECCCC---C--CCCCCBCTTTCCBEEEEEEEE
T ss_pred EEECCCCCceeEEEeecCh-hhc--ccccccccccCccchhhhHHH
Confidence 3469999976544332211 111 112346999999988765443
No 63
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=52.07 E-value=5.5 Score=35.46 Aligned_cols=35 Identities=23% Similarity=0.536 Sum_probs=25.6
Q ss_pred eeeecCCCCCccccc-eeccccccccCCCCccceeCCCCCceeEEec
Q 020384 269 LILKGPCPNCGTENV-SFFGTILSISSGGTTNTINCSNCGTTMVYDS 314 (327)
Q Consensus 269 liLKGpCPNCGeEv~-aFfGtilsv~s~~~~~~~kChvC~t~L~f~s 314 (327)
.-+.-.||+||..+| +. --++..|.-|+-...|+-
T Consensus 110 ~~~~~~Cp~Cg~g~fma~-----------h~dR~~CGkC~~t~~~~~ 145 (189)
T 2xzm_9 110 SLQQKGCPKCGPGIFMAK-----------HYDRHYCGKCHLTLKIDX 145 (189)
T ss_dssp EECSEECSTTCSSCEEEE-----------CSSCEEETTTCCCBCCHH
T ss_pred EEccccCCccCCCccccC-----------ccCCCccCCceeEEEeec
Confidence 456788999998765 21 123669999998888764
No 64
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=50.94 E-value=6.6 Score=35.95 Aligned_cols=33 Identities=30% Similarity=0.582 Sum_probs=23.6
Q ss_pred cceeee----cCCCCCccccceeccccccccCCCCccceeCCCCC
Q 020384 267 ESLILK----GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 307 (327)
Q Consensus 267 D~liLK----GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~ 307 (327)
+.+-++ -|||.||+++..-. + +.+..+-|++|.
T Consensus 231 ~~~~VygR~g~pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ 267 (268)
T 1k82_A 231 QELQVYGRKGEPCRVCGTPIVATK-----H---AQRATFYCRQCQ 267 (268)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEE-----E---TTEEEEECTTTC
T ss_pred ceEEEcccCCCCCCCCCCEeeEEE-----E---CCCceEECCCCC
Confidence 444555 47999999987542 1 357888999996
No 65
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=50.92 E-value=10 Score=30.57 Aligned_cols=36 Identities=28% Similarity=0.651 Sum_probs=23.3
Q ss_pred ecCCCCCccccceeccccccccCCC--CccceeCCCCCce
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGG--TTNTINCSNCGTT 309 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~--~~~~~kChvC~t~ 309 (327)
.-.||+||...-.||-. -..|.. .+--.+|.+||-.
T Consensus 72 ~~~Cp~C~~~~a~~~q~--q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQT--HSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp CSCCSSSCCSCEEEECC--CCSSCCCCCCCEEEESSSCCC
T ss_pred ccCCCCCCCceEEEEEE--ecccCCCCCeeEEEcCCCCCE
Confidence 46899999887777732 222322 3344789999853
No 66
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=50.68 E-value=11 Score=32.38 Aligned_cols=32 Identities=34% Similarity=0.745 Sum_probs=24.6
Q ss_pred ccceeeecCCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 266 RESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 266 ~D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
+++=.+..-|+.||+...- + + ++.+|++||..
T Consensus 134 ~~lGvv~a~~~~~g~~m~~-------~----~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 134 EEMGVLRALCSNCKTEMVR-------E----G-DILKCPECGRV 165 (179)
T ss_dssp TTCEEEECBCTTTCCBCEE-------C----S-SSEECSSSCCE
T ss_pred CCCCEEEecccccCCceEE-------C----C-CEEECCCCCCE
Confidence 5667788999999987632 2 3 78999999964
No 67
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=50.61 E-value=6.8 Score=36.05 Aligned_cols=34 Identities=29% Similarity=0.665 Sum_probs=23.2
Q ss_pred ccceeeec----CCCCCccccceeccccccccCCCCccceeCCCCC
Q 020384 266 RESLILKG----PCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 307 (327)
Q Consensus 266 ~D~liLKG----pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~ 307 (327)
++.+-++| |||.||+++..-. + +.+..+-|++|.
T Consensus 235 ~~~~~VygR~g~pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ 272 (273)
T 3u6p_A 235 QHHLYVYGRQGNPCKRCGTPIEKTV-----V---AGRGTHYCPRCQ 272 (273)
T ss_dssp --CCSSTTCTTSBCTTTCCBCEEEE-----E---TTEEEEECTTTC
T ss_pred cceEEEeCCCcCCCCCCCCeEEEEE-----E---CCCCeEECCCCC
Confidence 44455553 8999999987431 1 257888999996
No 68
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=50.46 E-value=7.5 Score=35.62 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=21.3
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCCc
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGT 308 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t 308 (327)
-|||.||+++..-. + +.+..+-|++|..
T Consensus 236 ~pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRV-----V---AGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEE-----S---SSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEE-----E---CCCceEECCCCCC
Confidence 47999999987542 1 3578889999975
No 69
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=49.22 E-value=5.5 Score=29.85 Aligned_cols=11 Identities=45% Similarity=1.192 Sum_probs=4.9
Q ss_pred ecCCCCCcccc
Q 020384 272 KGPCPNCGTEN 282 (327)
Q Consensus 272 KGpCPNCGeEv 282 (327)
|.-||+||++.
T Consensus 18 k~~CP~CG~~T 28 (60)
T 2apo_B 18 KEICPKCGEKT 28 (60)
T ss_dssp SSBCSSSCSBC
T ss_pred cccCcCCCCcC
Confidence 44444444443
No 70
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=48.48 E-value=11 Score=32.92 Aligned_cols=38 Identities=24% Similarity=0.553 Sum_probs=25.5
Q ss_pred cCCCCCccccceeccccccccCC--CCccceeCCCCCceeEE
Q 020384 273 GPCPNCGTENVSFFGTILSISSG--GTTNTINCSNCGTTMVY 312 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~--~~~~~~kChvC~t~L~f 312 (327)
-.||.||...-.||-. -..|. ..+--+.|.+||-.-.|
T Consensus 138 ~~Cp~C~~~~a~~~q~--Q~rsaDE~mt~f~~C~~C~~~w~f 177 (178)
T 3po3_S 138 FTCGKCKEKKVSYYQL--QTRSAAAPLTTFCTCEACGNRWKF 177 (178)
T ss_dssp SCCSSSCCSCEECCCC--CCSCTTSCCCCCEEETTTCCEECC
T ss_pred cCCCCCCCCceEEEEe--ecccCCCCCcEEEEcCCCCCeecc
Confidence 3799999988888732 22333 23456789999976443
No 71
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=47.98 E-value=7.9 Score=35.27 Aligned_cols=26 Identities=23% Similarity=0.599 Sum_probs=20.0
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCC
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 307 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~ 307 (327)
|||.||+++..-. + +.+..+-|++|.
T Consensus 236 pC~~CG~~I~~~~-----~---~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTT-----L---SSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEE-----E---TTEEEEECTTTC
T ss_pred CCCCCCCEeEEEE-----E---CCCCeEECCCCC
Confidence 8999999987431 1 267788999996
No 72
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=47.80 E-value=16 Score=30.40 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=23.8
Q ss_pred ceeeecCCCCCccccce-eccccccccCCCCcc----------ceeCCCCCceeEE
Q 020384 268 SLILKGPCPNCGTENVS-FFGTILSISSGGTTN----------TINCSNCGTTMVY 312 (327)
Q Consensus 268 ~liLKGpCPNCGeEv~a-FfGtilsv~s~~~~~----------~~kChvC~t~L~f 312 (327)
..-.+.-|+|||.+... -...-+ ....... ..+|+.||..-.+
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~--~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKF--DERIKEDIHFIPEVVHAFLACPKCGSHDFE 119 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCC--SCCCGGGCCCCGGGCGGGCSCSSSSCCCEE
T ss_pred ecCCcEECCCCCCEEecccccccc--cccccccccccccccccCCcCccccCCccE
Confidence 45568889999976321 000000 1111112 6789999998543
No 73
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=47.54 E-value=12 Score=35.42 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=11.4
Q ss_pred eeecCCCCCccccc
Q 020384 270 ILKGPCPNCGTENV 283 (327)
Q Consensus 270 iLKGpCPNCGeEv~ 283 (327)
--+|-||.||..=.
T Consensus 180 ~~~~~CPvCGs~P~ 193 (309)
T 2fiy_A 180 ESRTLCPACGSPPM 193 (309)
T ss_dssp TTCSSCTTTCCCEE
T ss_pred ccCCCCCCCCCcCc
Confidence 45899999998754
No 74
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=47.03 E-value=11 Score=30.83 Aligned_cols=37 Identities=19% Similarity=0.507 Sum_probs=25.1
Q ss_pred ecCCCCCccccceeccccccccCC--CCccceeCCCCCcee
Q 020384 272 KGPCPNCGTENVSFFGTILSISSG--GTTNTINCSNCGTTM 310 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~--~~~~~~kChvC~t~L 310 (327)
...||+||.+--.||-- -..|. ..+--++|.+||-.-
T Consensus 72 ~~~Cp~C~~~~a~~~q~--q~rsade~~t~fy~C~~C~~~w 110 (122)
T 1twf_I 72 DRECPKCHSRENVFFQS--QQRRKDTSMVLFFVCLSCSHIF 110 (122)
T ss_dssp CCCCTTTCCCCEEEEEC--SSCCTTCCCCEEEEETTTCCEE
T ss_pred CCCCCCCCCCEEEEEEe--cCccCCCCceEEEEeCCCCCEe
Confidence 67899999988888732 22333 233447999999763
No 75
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.88 E-value=4.8 Score=31.54 Aligned_cols=12 Identities=58% Similarity=1.237 Sum_probs=10.1
Q ss_pred ecCCCCCccccc
Q 020384 272 KGPCPNCGTENV 283 (327)
Q Consensus 272 KGpCPNCGeEv~ 283 (327)
.|+||-||.++-
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 789999998764
No 76
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=46.36 E-value=11 Score=30.36 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCCceeEE
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 312 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f 312 (327)
-||+||.-.+.=- ..+...+...|.+|+-....
T Consensus 6 FCp~Cgn~L~~~~------~~~~~~~~~~C~~C~y~~~~ 38 (113)
T 3h0g_I 6 YCIECNNMLYPRE------DKVDRVLRLACRNCDYSEIA 38 (113)
T ss_dssp CCSSSCCCCEECC------CTTTCCCCEECSSSCCEECC
T ss_pred eCcCCCCEeeEcc------cCCCCeeEEECCCCCCeEEc
Confidence 5999997654321 11235778999999975443
No 77
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=46.04 E-value=9.1 Score=41.86 Aligned_cols=37 Identities=41% Similarity=0.713 Sum_probs=28.3
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCCceeEEe
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYD 313 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~ 313 (327)
-||||.- .-|+ ++-++.||-+--.-+|++||+.|.=|
T Consensus 504 ~c~~c~~--~ef~-~~~~~~~g~dlp~k~cp~cg~~~~~d 540 (1041)
T 3f2b_A 504 VCPNCKH--SEFF-NDGSVGSGFDLPDKNCPRCGTKYKKD 540 (1041)
T ss_dssp ECTTTCC--EEEC-CSSCCSCGGGSCCCBCTTTCCBCEEE
T ss_pred cCccccc--cccc-cccccccccCCccccCcccccccccc
Confidence 3999985 3344 55677888888899999999987644
No 78
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=45.19 E-value=7.9 Score=28.93 Aligned_cols=35 Identities=20% Similarity=0.592 Sum_probs=19.9
Q ss_pred CCCCCcccc---------ceeccccccccCCCCccceeCCCCCceeE
Q 020384 274 PCPNCGTEN---------VSFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 274 pCPNCGeEv---------~aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
-||.||... +.|=|....| ....-..|++||....
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I---~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVL---KGIHGLYCVHCEESIM 47 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEE---EEEEEEEETTTCCEEC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEE---cCceeEECCCCCCEEE
Confidence 499998652 2232222222 1234678999998654
No 79
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=44.71 E-value=11 Score=35.51 Aligned_cols=37 Identities=14% Similarity=0.459 Sum_probs=22.3
Q ss_pred eecCCCCCccccc-eeccccccccC-----CCCcc-ceeCCCCCceeE
Q 020384 271 LKGPCPNCGTENV-SFFGTILSISS-----GGTTN-TINCSNCGTTMV 311 (327)
Q Consensus 271 LKGpCPNCGeEv~-aFfGtilsv~s-----~~~~~-~~kChvC~t~L~ 311 (327)
.-.-||+||++-. .|+ ++.+ ..... -.-|..|++-++
T Consensus 221 ~R~~C~~Cg~~~~l~y~----~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 221 VRIKCSHCEESKHLAYL----SLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp CTTSCSSSCCCSCCEEE----CCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCcCCcCCCCCCCeeEE----EecCccccCCCcceEEEEcccccchHh
Confidence 3457999999643 343 3444 22333 345899997664
No 80
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=44.58 E-value=13 Score=35.03 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=21.1
Q ss_pred CCCCCcccccee-ccccccccCCCCccceeCCCCCc
Q 020384 274 PCPNCGTENVSF-FGTILSISSGGTTNTINCSNCGT 308 (327)
Q Consensus 274 pCPNCGeEv~aF-fGtilsv~s~~~~~~~kChvC~t 308 (327)
|||.||+.+..- ||. ..+..+-|+.|..
T Consensus 253 pC~~CGt~I~~~~~g~-------~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGE-------NSRMTYFCPHCQK 281 (287)
T ss_dssp BCTTTCCBCEEECSST-------TCCCEEECTTTSC
T ss_pred CCCCCCCEEEEEEecC-------CCCCEEECCCccc
Confidence 999999998743 221 2478899999975
No 81
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=44.03 E-value=7.5 Score=29.17 Aligned_cols=11 Identities=45% Similarity=1.183 Sum_probs=4.9
Q ss_pred ecCCCCCcccc
Q 020384 272 KGPCPNCGTEN 282 (327)
Q Consensus 272 KGpCPNCGeEv 282 (327)
|..||+||++.
T Consensus 17 k~~CP~CG~~t 27 (60)
T 2aus_D 17 KETCPVCGEKT 27 (60)
T ss_dssp SSBCTTTCSBC
T ss_pred cccCcCCCCcc
Confidence 44444444443
No 82
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=43.99 E-value=9 Score=25.57 Aligned_cols=32 Identities=22% Similarity=0.663 Sum_probs=24.3
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCCceeEE
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 312 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f 312 (327)
-||.|+.+-..+.. + +...-.+|..||..-..
T Consensus 2 lC~~C~~peT~l~~-----~--~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIK-----E--GRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEE-----E--TTEEEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEE-----e--CCcEEEEhhcCCCcccc
Confidence 39999999887753 2 35677899999986544
No 83
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=43.64 E-value=11 Score=26.64 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=17.4
Q ss_pred CCCCCccccceec---cccccccCCCCccceeCCCCCce
Q 020384 274 PCPNCGTENVSFF---GTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 274 pCPNCGeEv~aFf---Gtilsv~s~~~~~~~kChvC~t~ 309 (327)
-|++|| +.|- |+- ..=...+..-.|++||..
T Consensus 6 ~C~vCG---yvyd~~~Gd~--t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 6 VCNVCG---YEYDPAEHDN--VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EETTTC---CEECGGGGTT--CCGGGSCTTCBCTTTCCB
T ss_pred ECCCCC---eEEeCCcCCC--cchhhCCCCCcCcCCCCc
Confidence 599999 4442 210 000023556789999964
No 84
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=42.62 E-value=12 Score=26.17 Aligned_cols=22 Identities=36% Similarity=0.999 Sum_probs=18.3
Q ss_pred CCC--CCccccceeccccccccCCCCccceeCCCCCce
Q 020384 274 PCP--NCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 274 pCP--NCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
.|| .||.-||+. +..|..|++.
T Consensus 16 ~C~~~~C~~~Nfa~--------------R~~C~~C~~p 39 (45)
T 1n0z_A 16 ICPDKKCGNVNFAR--------------RTSCDRCGRE 39 (45)
T ss_dssp BCSSTTTCCBCCSS--------------CSBCSSSCCB
T ss_pred CCCCCCCCCEEccc--------------cccccccCCc
Confidence 599 799999887 5679999886
No 85
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=42.24 E-value=12 Score=35.24 Aligned_cols=31 Identities=19% Similarity=0.498 Sum_probs=21.2
Q ss_pred ecCCCCCcc--ccceeccccccccCCCCccceeCCCCCceeE
Q 020384 272 KGPCPNCGT--ENVSFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 272 KGpCPNCGe--Ev~aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
+--||+||. .+..+ + ....+.-|..||..++
T Consensus 21 ~~~Cp~C~~~~~~lv~---D------~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVE---R------FSEGDVVCALCGLVLS 53 (345)
T ss_dssp -CCCSSCCCSSCCEEE---E------GGGTEEEETTTCBEEE
T ss_pred CCcCCCCCCCCCceeE---E------CCCCcEEeCCCCCCcc
Confidence 446999997 33322 1 1567889999998876
No 86
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=41.63 E-value=15 Score=28.80 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=19.0
Q ss_pred ccceeCCCCCceeEEeccceeeec
Q 020384 298 TNTINCSNCGTTMVYDSNTRLITL 321 (327)
Q Consensus 298 ~~~~kChvC~t~L~f~s~~R~itl 321 (327)
.++.+|++||..++|+..+-....
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C 48 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQC 48 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEE
T ss_pred cccCcCCCCCCcceeccCCCeEEC
Confidence 468899999999999976654444
No 87
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=39.86 E-value=14 Score=33.52 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=21.0
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
.--||.||++...- .......|+.|+..
T Consensus 107 ~~fC~~CG~~~~~~----------~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 107 HKYCGYCGHEMYPS----------KTEWAMLCSHCRER 134 (269)
T ss_dssp TSBCTTTCCBEEEC----------SSSSCEEESSSSCE
T ss_pred CCccccCCCcCccC----------CCceeeeCCCCCCE
Confidence 35799999987642 25567789999874
No 88
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=39.58 E-value=16 Score=33.08 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=23.0
Q ss_pred cceeeecCCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 267 ESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 267 D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
.+....=-|+.||.+.+... .++.-+.-.+|++|+..
T Consensus 129 ~~~~~~f~C~~C~~~~~v~~------~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 129 RIVKAVFECRGCMRHHAVTQ------STNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEEEEEETTTCCEEEEEC------SSSSCCCCSCCTTTCCC
T ss_pred EEEEEEEEcCCCCCEEEEEe------cCCcccCCCcCCCCCCC
Confidence 33444457999998764432 22233334589999987
No 89
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=38.64 E-value=33 Score=28.47 Aligned_cols=75 Identities=11% Similarity=-0.011 Sum_probs=50.1
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 020384 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (327)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~-gk~~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (327)
+.-+..++|++-+-+-+. .... .+.-+++|+-+.|.. .|.++ .+++.|+.-|+...+......-+
T Consensus 63 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 137 (188)
T 3c1l_A 63 SGLSKLDREMIAVAVSSINHCYYCLTAHGAAVRQLSGDPALGEMLVM--NFRAA---DLSPRQTAMLEFAVKLTEEPAKI 137 (188)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCHHHHHHHHH--CGGGG---CCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445667777776665431 1112 223577888777765 48887 36899998888877755544359
Q ss_pred ChHHHHHHHH
Q 020384 161 SDEEYDKLKQ 170 (327)
Q Consensus 161 sDeeFD~LK~ 170 (327)
+|+.|+.|+.
T Consensus 138 ~d~~~~~l~~ 147 (188)
T 3c1l_A 138 VEADRAALRK 147 (188)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999874
No 90
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=38.31 E-value=13 Score=30.68 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=26.0
Q ss_pred eeeecCCCCCccccceeccccccccCCCCccceeCCCCCceeEE
Q 020384 269 LILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 312 (327)
Q Consensus 269 liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f 312 (327)
....-+|| ||.. |.+....+ ..+ ..+.|..|...+..
T Consensus 109 ~~f~~~Cr-CG~~-f~i~~~~l--~~~---~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 109 HSFYLSCR-CGGK-YSVSKDEA--EEV---SLISCDTCSLIIEL 145 (155)
T ss_dssp TEEEEECS-SSCE-EEEETTHH--HHC---CEEECSSSSCEEEE
T ss_pred cEEEEcCC-CCCe-EEecHHHh--CCC---CEEECCCCceEEEE
Confidence 45667999 9965 77776665 222 57999999877653
No 91
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=36.21 E-value=18 Score=33.82 Aligned_cols=39 Identities=23% Similarity=0.562 Sum_probs=26.0
Q ss_pred ecCCCCCccccceeccccccccCC--CCccceeCCCCCceeEE
Q 020384 272 KGPCPNCGTENVSFFGTILSISSG--GTTNTINCSNCGTTMVY 312 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~--~~~~~~kChvC~t~L~f 312 (327)
.-.||.||...-.||-- -..+. ..+--+.|.+||-.-.|
T Consensus 268 ~~~C~~C~~~~~~~~q~--Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQL--QTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred cccCCCCCCCeeEEEEe--ecccCCCCCcEEEEeCCCCCceec
Confidence 34799999988888732 12222 23445899999976554
No 92
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=35.58 E-value=22 Score=26.99 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=19.7
Q ss_pred CCCCccccceeccccccccCCCCccceeCCCCCceeEEe
Q 020384 275 CPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYD 313 (327)
Q Consensus 275 CPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~ 313 (327)
||+|+.-+..- .....+.|+.|+...=|+
T Consensus 28 CP~C~~~~~~~----------~~~~~v~C~~C~~~FC~~ 56 (86)
T 2ct7_A 28 CAQCSFGFIYE----------REQLEATCPQCHQTFCVR 56 (86)
T ss_dssp CSSSCCCEECC----------CSCSCEECTTTCCEECSS
T ss_pred CcCCCchheec----------CCCCceEeCCCCCccccc
Confidence 99999866321 124568999999776543
No 93
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=35.52 E-value=13 Score=29.80 Aligned_cols=15 Identities=33% Similarity=0.724 Sum_probs=11.9
Q ss_pred cCCCCCccccceecc
Q 020384 273 GPCPNCGTENVSFFG 287 (327)
Q Consensus 273 GpCPNCGeEv~aFfG 287 (327)
|.||.||.+...+.+
T Consensus 91 ~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 91 GVCEKCHSKNVIITQ 105 (119)
T ss_dssp CCCSSSSSCCCEEEE
T ss_pred CcCccccCCCcEEec
Confidence 389999999877643
No 94
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=34.06 E-value=20 Score=30.88 Aligned_cols=35 Identities=20% Similarity=0.581 Sum_probs=26.6
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCCceeEEec
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 314 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s 314 (327)
--||.|+.+-..... + +...-.+|..||..-..+.
T Consensus 105 VlC~~C~sPdT~L~k-----~--~r~~~l~C~ACGa~~~V~~ 139 (148)
T 2d74_B 105 VICPVCGSPDTKIIK-----R--DRFHFLKCEACGAETPIQH 139 (148)
T ss_dssp SSCSSSCCTTCCCCB-----S--SSSBCCCCSSSCCCCCCCC
T ss_pred EECCCCCCcCcEEEE-----e--CCEEEEEecCCCCCccccc
Confidence 459999999887753 2 3567899999998766554
No 95
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=33.46 E-value=17 Score=27.01 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=11.6
Q ss_pred CCCCCccccceeccccccc
Q 020384 274 PCPNCGTENVSFFGTILSI 292 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv 292 (327)
-|||||...-.-|-++..|
T Consensus 15 ~CpnC~~~tt~~~~G~v~i 33 (59)
T 3lpe_B 15 ICPICHSPTSENWIGLLIV 33 (59)
T ss_dssp BCTTTCCBEESCEECEEEE
T ss_pred CCCCCCCCccCCEeeEEEE
Confidence 4999997655444444344
No 96
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=33.34 E-value=20 Score=30.52 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=23.4
Q ss_pred ccceeeecCCCCCccccceeccccccccCCCCccceeCCCCCceeEE
Q 020384 266 RESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVY 312 (327)
Q Consensus 266 ~D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f 312 (327)
.+++--.--||.|+.+-..... + +...-.+|..||..-..
T Consensus 97 ~~yI~~yVlC~~C~sPdT~l~k-----~--~r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 97 ERFLKAYVECSTCKSLDTILKK-----E--KKSWYIVCLACGAQTPV 136 (139)
T ss_dssp TTTSSCCSSCCSSSSSCCCSCS-----S--CSTTTSSCCC-------
T ss_pred HHHHHHeeECCCCCCcCcEEEE-----e--CCeEEEEecCCCCCCcc
Confidence 3344444569999999877742 2 36678999999976433
No 97
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=33.20 E-value=37 Score=28.31 Aligned_cols=75 Identities=9% Similarity=-0.013 Sum_probs=49.2
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 020384 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (327)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~-gk~~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (327)
+.-+..++|++-+-.-+. .... .+.-+++|+-+.|.. .|.++ .+++.|+.-|+...+......-+
T Consensus 66 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 140 (191)
T 2pfx_A 66 SQLSKLEREMIAVVVSSINKCFYCLVAHGAAVRQLSGDPQLGEMLVM--NYRVA---PLDARQRVMLDFAAKMTRASAEI 140 (191)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445667777776655321 1112 223567888877765 38877 47899998887777654433359
Q ss_pred ChHHHHHHHH
Q 020384 161 SDEEYDKLKQ 170 (327)
Q Consensus 161 sDeeFD~LK~ 170 (327)
+|+.|+.|+.
T Consensus 141 ~d~~~~~l~~ 150 (191)
T 2pfx_A 141 EEADREVLRS 150 (191)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 98
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=32.51 E-value=24 Score=28.07 Aligned_cols=36 Identities=28% Similarity=0.587 Sum_probs=20.5
Q ss_pred eecCCCCCccccceeccc----cccccCCC----CccceeCCCCCce
Q 020384 271 LKGPCPNCGTENVSFFGT----ILSISSGG----TTNTINCSNCGTT 309 (327)
Q Consensus 271 LKGpCPNCGeEv~aFfGt----ilsv~s~~----~~~~~kChvC~t~ 309 (327)
-+--|++|| +.|-+. ..+|..+. -+..-.|++||..
T Consensus 34 ~~y~C~vCG---yvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCG---HIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTT---EEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCC---eEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 367899999 444321 11222222 2344589999974
No 99
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=31.91 E-value=14 Score=31.39 Aligned_cols=30 Identities=20% Similarity=0.685 Sum_probs=23.3
Q ss_pred CCCCCccccceeccccccccCCCCccceeCCCCCcee
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 310 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L 310 (327)
-||.|+.+-..... + +...-.+|..||..-
T Consensus 104 lC~~C~sPdT~l~k-----~--~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 104 ICHECNRPDTRIIR-----E--GRISLLKCEACGAKA 133 (138)
T ss_dssp HHTCCSSCSSCCEE-----E--TTTTEEECSTTSCCC
T ss_pred ECCCCCCcCcEEEE-----c--CCeEEEEccCCCCCc
Confidence 49999999877753 2 356889999999753
No 100
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.64 E-value=16 Score=32.74 Aligned_cols=41 Identities=22% Similarity=0.536 Sum_probs=30.3
Q ss_pred eeecCCCCCccccc-eeccccccccCCCCccceeCCCCCceeEEecc
Q 020384 270 ILKGPCPNCGTENV-SFFGTILSISSGGTTNTINCSNCGTTMVYDSN 315 (327)
Q Consensus 270 iLKGpCPNCGeEv~-aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~ 315 (327)
+-.|.|-.|+..+. +.+-.|. . ...-+-|++||+.|.+...
T Consensus 196 v~~~~C~GC~~~lppq~~~~i~---~--~~~Iv~Cp~CgRIL~~~~~ 237 (256)
T 3na7_A 196 IKKQACGGCFIRLNDKIYTEVL---T--SGDMITCPYCGRILYAEGA 237 (256)
T ss_dssp CBTTBCTTTCCBCCHHHHHHHH---H--SSSCEECTTTCCEEECSCC
T ss_pred eeCCccCCCCeeeCHHHHHHHH---C--CCCEEECCCCCeeEEeCcc
Confidence 34688999999987 6665553 2 2344899999999998754
No 101
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.33 E-value=20 Score=31.23 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=30.4
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCCceeEEecccee
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRL 318 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R~ 318 (327)
--||.|+.+-..+..+ ..+...-.+|..||..-..+....+
T Consensus 104 VlC~~C~sPdT~L~~~-----~~~r~~~l~C~ACGa~~~V~~~~Kl 144 (157)
T 2e9h_A 104 VLCPECENPETDLHVN-----PKKQTIGNSCKACGYRGMLDTHHKL 144 (157)
T ss_dssp TSCTTTCCSCCEEEEE-----TTTTEEEEECSSSCCEEECCCCSSH
T ss_pred EECCCCCCCccEEEEe-----cCCCEEEEEccCCCCCCcccchhhh
Confidence 4599999998887531 1245678999999999888864444
No 102
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=30.10 E-value=25 Score=30.32 Aligned_cols=27 Identities=26% Similarity=0.807 Sum_probs=19.4
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCCcee
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 310 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L 310 (327)
-+||.|+.|. +|- +....-|+-|+-.-
T Consensus 28 P~CP~C~sey-tYe----------Dg~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEY-TYE----------DGALLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCC-CEE----------CSSSEEETTTTEEE
T ss_pred CCCCCCCCcc-eEe----------cCCeEECCcccccc
Confidence 7899999885 452 34457899998654
No 103
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=29.69 E-value=19 Score=29.09 Aligned_cols=16 Identities=19% Similarity=0.771 Sum_probs=12.4
Q ss_pred ccceeCCCCCceeEEe
Q 020384 298 TNTINCSNCGTTMVYD 313 (327)
Q Consensus 298 ~~~~kChvC~t~L~f~ 313 (327)
-|-+||+.||..|..+
T Consensus 6 ~~~~~~PlCG~~L~W~ 21 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWE 21 (95)
T ss_dssp --CEECSSSCCEECHH
T ss_pred cccccCCcCCCccCHH
Confidence 4678999999998765
No 104
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.51 E-value=38 Score=24.64 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=23.6
Q ss_pred ecCCCCCccccceeccccccccCCCCccc--eeCCCCCceeE
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 311 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~--~kChvC~t~L~ 311 (327)
..-|+.|++.|. +..+. ..+..-|. .+|+.|+..|.
T Consensus 15 ~~~C~~C~~~I~---~~~v~-a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID---EQPLI-FKNDPYHPDHFNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC---SCCCC-CSSSCCCTTTSBCSSSCCBCC
T ss_pred CCCCccCCCEec---ceEEE-ECcceeCCCCCEeCCCCCccC
Confidence 346999999998 33322 22233333 68999999886
No 105
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=29.19 E-value=18 Score=35.55 Aligned_cols=10 Identities=50% Similarity=1.371 Sum_probs=8.1
Q ss_pred ecCCCCCccc
Q 020384 272 KGPCPNCGTE 281 (327)
Q Consensus 272 KGpCPNCGeE 281 (327)
.|.||.||.+
T Consensus 155 ~g~cp~c~~~ 164 (560)
T 3h99_A 155 KGTCPKCKSP 164 (560)
T ss_dssp EEECTTTCCS
T ss_pred CCCCCCCCCc
Confidence 5889999864
No 106
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=28.87 E-value=28 Score=29.38 Aligned_cols=39 Identities=23% Similarity=0.557 Sum_probs=27.2
Q ss_pred CCCCCccccc-------------eecccccc-------ccCCCCccceeCCCCCcee--EE
Q 020384 274 PCPNCGTENV-------------SFFGTILS-------ISSGGTTNTINCSNCGTTM--VY 312 (327)
Q Consensus 274 pCPNCGeEv~-------------aFfGtils-------v~s~~~~~~~kChvC~t~L--~f 312 (327)
-|-.||++.| +|+..|.. ..++..+-++.|.+|+.-| +|
T Consensus 22 ~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~~~~r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 22 VCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSSSTTCEEEECTTTTCCCEEEC
T ss_pred EecCCCCcccccCCcccCCCCCceeecccccceEEEEeccCCceEEEEEEecCCCccCCcc
Confidence 5899999988 57766531 1223345678999999877 55
No 107
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=28.84 E-value=24 Score=31.96 Aligned_cols=39 Identities=18% Similarity=0.414 Sum_probs=24.3
Q ss_pred ccceeeecCCCCCccccceeccccccccCCCCccceeCCCCCceeE
Q 020384 266 RESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 266 ~D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
+..+-.+--||.||...-...-+ ..+.+.-|..||.-++
T Consensus 15 ~~~ln~~~~CPECGs~~t~IV~D-------~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 15 GPNLNIVLTCPECKVYPPKIVER-------FSEGDVVCALCGLVLS 53 (197)
T ss_dssp SSCCCCCCCCTTTCCSSCCEEEE-------GGGTEEEETTTCBBCC
T ss_pred ccccccCeECcCCCCcCCeEEEe-------CCCCEEEEcCCCCCcC
Confidence 33333444799999842212111 1567889999998874
No 108
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=28.74 E-value=55 Score=27.47 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=50.6
Q ss_pred cccchhHHHHHHHHHHHH---------hhhcC-ccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 020384 91 EKKSLGELEQEFLQALQA---------FYYEG-KAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (327)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~g-k~~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (327)
+.-+..++|++-+-.-+. .+... +.-+++++-+.|.. .|.++ .+++.|+.-|+...+......-+
T Consensus 71 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 145 (196)
T 2oyo_A 71 GYLTNAERELVAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAV--NWRHA---DLTEREQALAAYAEKLTRHPAEV 145 (196)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 455667778777765442 11222 22567787777765 48887 36899998888877765544459
Q ss_pred ChHHHHHHHH
Q 020384 161 SDEEYDKLKQ 170 (327)
Q Consensus 161 sDeeFD~LK~ 170 (327)
+|+.|+.|+.
T Consensus 146 ~d~~~~~l~~ 155 (196)
T 2oyo_A 146 TAADLEPLRA 155 (196)
T ss_dssp CGGGGHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 109
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.44 E-value=37 Score=24.35 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=22.1
Q ss_pred CCCCCccccceeccccccccCCCCccc--eeCCCCCceeE
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 311 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~~~--~kChvC~t~L~ 311 (327)
.|+.|+..|..- .+. ..+..-|. .+|+.|+..|.
T Consensus 7 ~C~~C~~~I~~~---~v~-a~~~~wH~~CF~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGR---VLE-AGEKHYHPSCALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSC---CBC-CSSCCBCTTTSCCSSSCCCCC
T ss_pred CcccCCCEecCe---eEE-eCCCCCCCCcCEeCCCCCCCC
Confidence 599999999752 221 22333333 57899998875
No 110
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=27.77 E-value=32 Score=26.97 Aligned_cols=35 Identities=23% Similarity=0.622 Sum_probs=20.3
Q ss_pred ecCCCCCccccceecccc----ccccCCC----CccceeCCCCCce
Q 020384 272 KGPCPNCGTENVSFFGTI----LSISSGG----TTNTINCSNCGTT 309 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGti----lsv~s~~----~~~~~kChvC~t~ 309 (327)
+--|++|| +.|-+.. .+|..+. -+..-.|++||..
T Consensus 27 ~y~C~vCG---yvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCG---FEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTC---CEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCC---EEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 67799999 4453311 1222222 3445689999974
No 111
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=27.62 E-value=17 Score=26.43 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=9.1
Q ss_pred ecCCCCCccccc
Q 020384 272 KGPCPNCGTENV 283 (327)
Q Consensus 272 KGpCPNCGeEv~ 283 (327)
--.||+|||-..
T Consensus 27 l~~c~~cGe~~l 38 (56)
T 3r8s_0 27 LSVDKTSGEKHL 38 (56)
T ss_dssp EEECTTTCCEEE
T ss_pred eeECCCCCCeec
Confidence 457999999544
No 112
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=26.94 E-value=43 Score=28.15 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=48.9
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCcc
Q 020384 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (327)
Q Consensus 91 ~k~slge~E~~fl~Al~~---------fY~~-gk~~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPim 160 (327)
+.-+..++|++-+-.-+. .... .+.-+++|+-+.|... |.++ .+++.|+.-|+...+.-....-+
T Consensus 67 ~~L~~~~rELi~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~--~~~~---~~~~~era~l~~a~~lt~~~~~v 141 (197)
T 2prr_A 67 GGLTKGEREMIVVATSAANQCLYCVVAHGAILRIYEKKPLVADQVAVN--YLKA---DIPPRQRAMLDFALKVCKASHEV 141 (197)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTHHHHHHHH--GGGS---SCCHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHh--hhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 445667777776665431 1111 2224677777777643 8877 36899998888877754433359
Q ss_pred ChHHHHHHHH
Q 020384 161 SDEEYDKLKQ 170 (327)
Q Consensus 161 sDeeFD~LK~ 170 (327)
+|+.|+.|+.
T Consensus 142 ~d~~~~~l~~ 151 (197)
T 2prr_A 142 NEADFEALRE 151 (197)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 9999999874
No 113
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=26.65 E-value=26 Score=31.44 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=22.0
Q ss_pred eeeecCCCCCccccceeccccccccCCCCccceeCCCCCce
Q 020384 269 LILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTT 309 (327)
Q Consensus 269 liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~ 309 (327)
.+---+|.+||.+-.+-+. ...+..+|+.|.-.
T Consensus 131 ~L~l~~C~~Cgg~fv~~~~--------~~~~~f~Cp~C~~p 163 (192)
T 2avu_E 131 LLQLSSCNCCGGNFITHAH--------QPVGSFACSLCQPP 163 (192)
T ss_dssp SEEEEECTTTCCEEEEESS--------CCSSCCCCTTC---
T ss_pred ceeeCcCCCCCCCeeCccC--------CCCCCCcCCCCCCc
Confidence 4445689999998655542 25689999999843
No 114
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=26.17 E-value=34 Score=33.81 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=23.0
Q ss_pred ecCCCCCccccceeccccccccCCCCccceeCCCCCceeEEec
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDS 314 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s 314 (327)
++.|+||+.++..=- .........-|+.|+..+.|..
T Consensus 34 ~~~c~~c~~~~~~~~------~~~~~~~~~~c~~c~~~~~~~~ 70 (681)
T 2pzi_A 34 KRFCWNCGRPVGRSD------SETKGASEGWCPYCGSPYSFLP 70 (681)
T ss_dssp GCBCTTTCCBCSCC-----------CCSEEECTTTCCEEECSC
T ss_pred cccCccCCCcCCCcc------cCCCcccCCcCCCCCCccccCC
Confidence 457999999874211 1112234567999999887654
No 115
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.61 E-value=47 Score=24.33 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=22.4
Q ss_pred cCCCCCccccceeccccccccCCCCccc--eeCCCCCceeE
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 311 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~--~kChvC~t~L~ 311 (327)
..|+.|++.|+. +..+. ..+..-|. .+|..|++.|.
T Consensus 16 ~~C~~C~~~I~~--~e~v~-a~~~~wH~~CF~C~~C~~~L~ 53 (82)
T 2co8_A 16 DLCALCGEHLYV--LERLC-VNGHFFHRSCFRCHTCEATLW 53 (82)
T ss_dssp CBCSSSCCBCCT--TTBCC-BTTBCCBTTTCBCSSSCCBCC
T ss_pred CCCcccCCCccc--ceEEE-ECCCeeCCCcCEEcCCCCCcC
Confidence 469999999962 11121 22333343 68999998874
No 116
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.54 E-value=38 Score=24.59 Aligned_cols=30 Identities=27% Similarity=0.715 Sum_probs=21.0
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCC--CCceeEE
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSN--CGTTMVY 312 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChv--C~t~L~f 312 (327)
-+||+|+..|-- ++.=|...|.+ |+...=|
T Consensus 7 k~CP~C~~~Iek----------~~GCnhmtC~~~~C~~~FCw 38 (60)
T 1wd2_A 7 KECPKCHVTIEK----------DGGCNHMVCRNQNCKAEFCW 38 (60)
T ss_dssp CCCTTTCCCCSS----------CCSCCSSSCCSSGGGSCCSS
T ss_pred eECcCCCCeeEe----------CCCCCcEEECCCCcCCEEee
Confidence 589999986643 34567788887 8765544
No 117
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=25.01 E-value=54 Score=26.83 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=26.3
Q ss_pred ccceeeecCCCCCccc------cceeccccccccCCCCccceeCCCCCceeE
Q 020384 266 RESLILKGPCPNCGTE------NVSFFGTILSISSGGTTNTINCSNCGTTMV 311 (327)
Q Consensus 266 ~D~liLKGpCPNCGeE------v~aFfGtilsv~s~~~~~~~kChvC~t~L~ 311 (327)
...-.|.+-+|++-.- ..--||...+ ....-.+.|.||++.+.
T Consensus 33 ~~~k~l~~r~p~~k~y~~~~~~~lDIfG~~~~---~~~s~~~~C~nC~R~va 81 (99)
T 3mhs_C 33 TQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQ---QESSQYIHCENCGRDVS 81 (99)
T ss_dssp HHHHHHHHHCTTCCCCCCCTTSCSCTTSCCCC---CTTSCEEECTTTCCEEE
T ss_pred HHHHHHhccCCCCCCceecCCCCcccCCCcCc---ccCCCeEECCCCCCCch
Confidence 3344567778887322 2234454322 25778899999999764
No 118
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=24.79 E-value=29 Score=31.36 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=16.5
Q ss_pred cceeCCCCCceeEEeccceeeecCC
Q 020384 299 NTINCSNCGTTMVYDSNTRLITLPE 323 (327)
Q Consensus 299 ~~~kChvC~t~L~f~s~~R~itl~~ 323 (327)
|...|+.|+..-.-....++..+|+
T Consensus 230 ~~~~C~~C~~~~~a~K~~~i~~lP~ 254 (367)
T 2y6e_A 230 DPWYCPNCKKHQQATKKFDLWSLPK 254 (367)
T ss_dssp CCEEETTTTEEECCEEEEEEEECCS
T ss_pred CCccCCCCCCCceEEEEEEEecCCc
Confidence 4578999997655444555666664
No 119
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=24.17 E-value=24 Score=27.05 Aligned_cols=13 Identities=31% Similarity=1.004 Sum_probs=9.1
Q ss_pred eecCCCCCccccc
Q 020384 271 LKGPCPNCGTENV 283 (327)
Q Consensus 271 LKGpCPNCGeEv~ 283 (327)
-.--|||||.+.+
T Consensus 22 ~~~~CPnC~s~~t 34 (69)
T 1ryq_A 22 SEDRCPVCGSRDL 34 (69)
T ss_dssp SSSSCTTTCCCCE
T ss_pred cCCcCCCccCCcc
Confidence 3446999997653
No 120
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=23.50 E-value=31 Score=29.96 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=28.4
Q ss_pred eeeecCCCCCccccc-eecccc----ccccCCCCccceeCCCCCceeEEe
Q 020384 269 LILKGPCPNCGTENV-SFFGTI----LSISSGGTTNTINCSNCGTTMVYD 313 (327)
Q Consensus 269 liLKGpCPNCGeEv~-aFfGti----lsv~s~~~~~~~kChvC~t~L~f~ 313 (327)
-.+|=-|.||||+-- .++-.. ++...+.+..-.||..|++....+
T Consensus 34 ~~fkvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si~ 83 (164)
T 1zso_A 34 WIFNIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTIN 83 (164)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEEE
T ss_pred EEEEEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceEE
Confidence 457788999999744 333221 122334445667999999876554
No 121
>3m1m_A ORF904; primase, polymerase, replication; 1.85A {Sulfolobus islandicus}
Probab=23.18 E-value=29 Score=33.75 Aligned_cols=68 Identities=22% Similarity=0.425 Sum_probs=38.0
Q ss_pred HHhhhcCcc-ccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHHHHhhcCCceeeecCe
Q 020384 107 QAFYYEGKA-VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPR 185 (327)
Q Consensus 107 ~~fY~~gk~-~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPimsDeeFD~LK~kLk~~GS~VVvk~Pr 185 (327)
..+-++.+. +.+.+||..|||| |..|-+||+| |++|.++=.+=++..+..--
T Consensus 209 ~~w~~~~~~~~~~~~~~~~~~~e---------------------~~k~~~~k~~------~~~~~~~c~~~~~~~~~~~~ 261 (335)
T 3m1m_A 209 KEWLEGKKEEEDTVVEFEELRKE---------------------LVKRDSGKPV------EKIKEEICTKSPPKLIKEII 261 (335)
T ss_dssp HHHHCC-----------CHHHHH---------------------HHHHCCCCCH------HHHHHHHHTSCCCHHHHHHH
T ss_pred HHHhcCcccccccHHHHHHHHHH---------------------HHhhcCCCcH------HHHHHHHHHhhhhhceeeee
Confidence 344455444 3356677777776 3347788876 67777776555555444444
Q ss_pred eeecCCceeecchhhHHHH
Q 020384 186 CSLRSRKVYSDLSVDYLKM 204 (327)
Q Consensus 186 Cslr~~~vySDae~D~lkm 204 (327)
| .++.|+|...|.++=
T Consensus 262 c---~~k~y~~~~~drsrg 277 (335)
T 3m1m_A 262 C---ENKTYADVNIDRSRG 277 (335)
T ss_dssp T---SCCCTTTTTCCHHHH
T ss_pred e---cCCchhhcccccccC
Confidence 5 567899999998873
No 122
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=22.70 E-value=12 Score=34.74 Aligned_cols=37 Identities=24% Similarity=0.484 Sum_probs=25.8
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCCceeEEecccee
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRL 318 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R~ 318 (327)
--||+|++++|.= .+ ..|...|+.|+....+++..|+
T Consensus 31 ~kc~~~~~~~y~~---~l------~~~~~v~p~~~~~~r~~arerI 67 (285)
T 2f9i_B 31 TKCPKCKKIMYTK---EL------AENLNVCFNCDHHIALTAYKRI 67 (285)
T ss_dssp EECTTTCCEEEHH---HH------HHTTTBCTTTCCBCCCCHHHHH
T ss_pred HhhHhhCCccchh---hh------HHhcCcCCCCCCCCCCCHHHHH
Confidence 3599999988752 11 3455679999987777665554
No 123
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=22.38 E-value=24 Score=31.12 Aligned_cols=42 Identities=21% Similarity=0.466 Sum_probs=30.4
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCCceeEEeccceee
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTMVYDSNTRLI 319 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L~f~s~~R~i 319 (327)
--||.|+.+-..+..+ +.+...-.+|..||..-..+...++.
T Consensus 97 VlC~~C~sPdT~L~k~-----~~~r~~~l~C~ACGa~~~V~~~~kl~ 138 (170)
T 2g2k_A 97 VLCPECENPETDLHVN-----PKKQTIGNSCKACGYRGMLDTHHKLC 138 (170)
T ss_dssp HSCTTTSSSCEEEEEE-----TTTTEEEEEETTTCCCCCSCSSSSHH
T ss_pred EECCCCCCCccEEEEe-----cCCCEEEEEccccCCcccccccccee
Confidence 3599999998877532 12456779999999988877544443
No 124
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.14 E-value=37 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.462 Sum_probs=22.5
Q ss_pred ecCCCCCccccceeccccccccCCCCccc--eeCCCCCceeE
Q 020384 272 KGPCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 311 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~~~~~~--~kChvC~t~L~ 311 (327)
...|..|++.|..-+ +. ..+..-|. .+|+.|+..|.
T Consensus 25 ~~~C~~C~~~I~~~~--~~--a~~~~~H~~CF~C~~C~~~L~ 62 (89)
T 1x64_A 25 MPLCDKCGSGIVGAV--VK--ARDKYRHPECFVCADCNLNLK 62 (89)
T ss_dssp CCBCTTTCCBCCSCC--EE--SSSCEECTTTCCCSSSCCCTT
T ss_pred CCCcccCCCEecccE--EE--ECCceECccCCEecCCCCCCC
Confidence 356999999998522 21 12223332 57899998874
No 125
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=21.71 E-value=84 Score=24.92 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=32.3
Q ss_pred ccChHHHhhhHhhhhhcCCeeEEeChhhHHHHHHHHhhhcCCCccChHHHHHHHHHH
Q 020384 116 VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKL 172 (327)
Q Consensus 116 ~~sdeefd~LkEeL~weGSsvv~L~~~Eq~fLEA~~AY~sGkPimsDeeFD~LK~kL 172 (327)
+||-|+|+.|.|.+-+-.+ ...-+...+|...+-.|+.+ .+|.++.+|
T Consensus 46 l~s~e~ye~l~etl~LL~~-----~~~~~~L~~a~~~~~~G~~~----s~eev~~~l 93 (108)
T 3g5o_A 46 LVGADEWESLQETLYWLAQ-----PGIRESIAEADADIASGRTY----GEDEIRAEF 93 (108)
T ss_dssp EEEHHHHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHTCEE----CHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHcCCCc----CHHHHHHHh
Confidence 6788899999887543221 12235666677779999986 456677777
No 126
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=21.27 E-value=30 Score=27.38 Aligned_cols=16 Identities=31% Similarity=1.097 Sum_probs=11.0
Q ss_pred CCCCCccccc--eecccc
Q 020384 274 PCPNCGTENV--SFFGTI 289 (327)
Q Consensus 274 pCPNCGeEv~--aFfGti 289 (327)
-|||||.+.+ .|.|-|
T Consensus 37 ~CPnCgs~~~T~~w~G~V 54 (81)
T 3p8b_A 37 RCPVCGSRDLSEEWFDLV 54 (81)
T ss_dssp SCTTTCCCCEESCEEEEE
T ss_pred CCCCCCCCccCCccceEE
Confidence 5999998774 454443
No 127
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=20.88 E-value=21 Score=30.00 Aligned_cols=36 Identities=33% Similarity=0.719 Sum_probs=0.0
Q ss_pred ecCCCCCccccceeccccccccCC--CCccceeCCCCCce
Q 020384 272 KGPCPNCGTENVSFFGTILSISSG--GTTNTINCSNCGTT 309 (327)
Q Consensus 272 KGpCPNCGeEv~aFfGtilsv~s~--~~~~~~kChvC~t~ 309 (327)
.-.||+||...-.||-. -..+. ..+-=++|.+||-.
T Consensus 92 ~~~CpkCg~~~a~f~q~--Q~RsaDE~mT~fy~C~~C~~~ 129 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQL--QIRSADEPMTTFYKCVNCGHR 129 (133)
T ss_dssp ----------------------------------------
T ss_pred cCCCCCCCCceEEEEEE--eeecCCCCCcEEEEcCCCCCE
Confidence 45899999887777722 22222 23445679888753
No 128
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.75 E-value=37 Score=24.26 Aligned_cols=35 Identities=14% Similarity=0.396 Sum_probs=22.2
Q ss_pred cCCCCCccccceeccccccccCCCCcc--ceeCCCCCceeE
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTN--TINCSNCGTTMV 311 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~--~~kChvC~t~L~ 311 (327)
-.|+.|++.|..-+ +. ..+..-| =.+|+.|+..|.
T Consensus 16 ~~C~~C~~~I~~~~--v~--a~~~~~H~~CF~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLENY--LS--AMDTVWHPECFVCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCSSC--EE--ETTEEECTTTCBCSSSCCBSC
T ss_pred CccccCCCeeccee--EE--ECCCeEecCcCChhhCCCCCC
Confidence 46999999998521 21 1222222 367899999885
No 129
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=20.56 E-value=29 Score=25.68 Aligned_cols=20 Identities=40% Similarity=1.167 Sum_probs=14.5
Q ss_pred cCCCCCccccceeccccccccCCCCccceeCCCCC
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNTINCSNCG 307 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~ 307 (327)
..||+||+-.. +|.+ |.+||
T Consensus 31 ~~c~~cGe~~~--------------~H~v-c~~CG 50 (60)
T 3v2d_5 31 VPCPECKAMKP--------------PHTV-CPECG 50 (60)
T ss_dssp EECTTTCCEEC--------------TTSC-CTTTC
T ss_pred eECCCCCCeec--------------ceEE-cCCCC
Confidence 46999999432 4444 99999
No 130
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.48 E-value=67 Score=22.99 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=21.4
Q ss_pred CCCCCccccceeccccccccCCCCc--cceeCCCCCceeE
Q 020384 274 PCPNCGTENVSFFGTILSISSGGTT--NTINCSNCGTTMV 311 (327)
Q Consensus 274 pCPNCGeEv~aFfGtilsv~s~~~~--~~~kChvC~t~L~ 311 (327)
-|+.|++.|. +..... .+..- +=.+|..|+..|.
T Consensus 17 ~C~~C~~~I~---~~~~~a-~~~~~H~~CF~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMT---GPFMVA-GEFKYHPECFACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCC---SCCBCC-TTCCBCTTSCBCTTTCCBCC
T ss_pred cCccCCCCcC---ceEEEE-CCceeccccCCccCCCCccC
Confidence 4999999998 333221 22222 2357899998884
No 131
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.41 E-value=74 Score=26.13 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhccceeeecCCCCCccccceeccccccccCCCCccceeCCCCCcee
Q 020384 254 VYLSQSLTKLIVRESLILKGPCPNCGTENVSFFGTILSISSGGTTNTINCSNCGTTM 310 (327)
Q Consensus 254 ~~~a~~Lt~l~~~D~liLKGpCPNCGeEv~aFfGtilsv~s~~~~~~~kChvC~t~L 310 (327)
--+++++..-. +-+++..--|-+||.+ | .. .-.-..+|+.|++.=
T Consensus 50 eHIaksl~r~g-~~L~v~p~~C~~CG~~---F-~~-------~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 50 KVISKIAKREG-MVLLIKPAQCRKCGFV---F-KA-------EINIPSRCPKCKSEW 94 (105)
T ss_dssp HHHHHHHTTTT-EEEEECCCBBTTTCCB---C-CC-------CSSCCSSCSSSCCCC
T ss_pred HHHHHHHhcCC-cEEEEECcChhhCcCe---e-cc-------cCCCCCCCcCCCCCc
Confidence 35666665543 2467788889999987 3 11 123347999999763
No 132
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.05 E-value=53 Score=22.85 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=22.1
Q ss_pred cCCCCCccccc--eeccccccccCCCCccc--eeCCCCCceeE
Q 020384 273 GPCPNCGTENV--SFFGTILSISSGGTTNT--INCSNCGTTMV 311 (327)
Q Consensus 273 GpCPNCGeEv~--aFfGtilsv~s~~~~~~--~kChvC~t~L~ 311 (327)
..|+.|++.|. ..+ .. ..+..-|. .+|..|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~---~~-a~~~~~H~~CF~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK---LE-YGGQTWHEHCFLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCE---EC-STTCCEETTTCBCTTTCCBTT
T ss_pred CCCccCCCccccCccE---EE-ECccccCcccCeECCCCCcCC
Confidence 46999999998 332 11 12233333 67899998874
No 133
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.03 E-value=42 Score=23.16 Aligned_cols=35 Identities=17% Similarity=0.497 Sum_probs=22.4
Q ss_pred cCCCCCccccceeccccccccCCCCccc--eeCCCCCceeE
Q 020384 273 GPCPNCGTENVSFFGTILSISSGGTTNT--INCSNCGTTMV 311 (327)
Q Consensus 273 GpCPNCGeEv~aFfGtilsv~s~~~~~~--~kChvC~t~L~ 311 (327)
..|+.|++.|. +.... ..+..-|. .+|..|++.|.
T Consensus 6 ~~C~~C~~~I~---~~~~~-a~~~~~H~~CF~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIE---GRVVN-AMGKQWHVEHFVCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECC---SCEEC-CTTSBEETTTCBCTTTCCBCS
T ss_pred CCCcccCCEec---ceEEE-ECccccccCcCEECCCCCCCC
Confidence 46999999997 33322 22223333 57899999875
Done!