BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020385
         (327 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TNU|A Chain A, Heterocomplex Of Coil 2b Domains Of Human Intermediate
           Filament Proteins, Keratin 5 (Krt5) And Keratin 14
           (Krt14)
          Length = 131

 Score = 32.7 bits (73), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 13/93 (13%)

Query: 37  KISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN---KHQVSLRTTL-NKLKE 92
           K  +LN E+A  +E       LVQ   +++ ELR+T+Q+L    + Q+S++ +L N L+E
Sbjct: 18  KTEELNREVATNSE-------LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEE 70

Query: 93  KTGALDEKFSQTEFDLVQSV-QQNADLRSKIVQ 124
             G    + +Q + +++ SV +Q A LR ++ Q
Sbjct: 71  TKGRYCMQLAQIQ-EMIGSVEEQLAQLRCEMEQ 102


>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
 pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
          Length = 357

 Score = 28.1 bits (61), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 270 EAVVTEVDAITSKTKFV-KESGAAKLQELASKAEEIVEKFQQY 311
           EA VT+V  ++ K   V  +SGA +L E+  K   +V KF +Y
Sbjct: 94  EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKY 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.124    0.306 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,893,577
Number of Sequences: 62578
Number of extensions: 233164
Number of successful extensions: 1313
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 132
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)