BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020385
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SN90|SMC22_ARATH Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis
thaliana GN=SMC2-2 PE=2 SV=1
Length = 1171
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 124/275 (45%), Gaps = 51/275 (18%)
Query: 9 LRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKE 68
+RD ++++ + +T +DEQ + + +IS+L +I A + RE + +VK
Sbjct: 245 IRDNSIHVVEEMKIKMTGIDEQTDKTQGEISELEKQIKALTQAREASM------GGEVKA 298
Query: 69 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK 128
L + L+ + L ++ D +Q ++NA+ K+V + E
Sbjct: 299 LSDKVDSLSNEVTRELSKLTNME---------------DTLQGEEKNAE---KMVHNIED 340
Query: 129 LQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSA 188
L++++EE+ S + + Q FQE +TTLE ++ + Q IL +
Sbjct: 341 LKKSVEERASALNKCDEGAAELKQKFQEFSTTLEECER----------EHQGIL----AG 386
Query: 189 KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLD-ELQQQLEKERNLKSEDATRA 247
KS + K L+ +L D + + E +L + K+ + EL+++ K + + +D A
Sbjct: 387 KSSGDEEKCLEDQLRDAKISVGTAETELKQLNTKISHCEKELKEK--KSQLMSKQDEAVA 444
Query: 248 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK 282
EN +L+AR+ VE+V D++ K
Sbjct: 445 VEN----------ELDARKNDVESVKRAFDSLPYK 469
>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1
Length = 3674
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 109/227 (48%), Gaps = 41/227 (18%)
Query: 34 LEDKISQLNAEIAAYNEVRERELPLVQEVDA-KVKELRQTIQ-DLNKHQVSLRTTLNKLK 91
++D +S ++ ++A Y + +VDA ++ + Q IQ DL H++SL +
Sbjct: 1378 IQDSLSSIDHQLAVY---------IADKVDAAQMPQEAQKIQSDLTSHEISLEEMKKHYQ 1428
Query: 92 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAM 151
K A SQ E L Q Q+ ++ ++ Q P ++ L+E K I +E K+ +
Sbjct: 1429 GKEAA-PRVLSQIE--LAQKKLQDVSMKFRLFQKPANFEQRLQESKMILDEV----KMHL 1481
Query: 152 QSFQEKTTTLEVYQKTL-------KKMSKQSAQMQAIL---------EQVNSAKSIEKDY 195
+ + K+ EV Q L K +S+ ++++ ++ +Q + K +++
Sbjct: 1482 PALEIKSVEQEVVQSQLNHCVNLYKSLSEVKSEVEMVIKTGRQIVQKKQTENPKELDERV 1541
Query: 196 KSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 242
+LK N+ L AK+ ER+ ++E+ +L +++ KE N+ +E
Sbjct: 1542 TALKLHYNE-------LGAKVTERKQQLEKCLKLSRKMRKEMNVLTE 1581
>sp|Q9M7J4|MFP1_TOBAC MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum
GN=MFP1-1 PE=2 SV=1
Length = 722
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 107 DLVQSVQQNADLRSKIVQSPEKLQRTLEE-----KKSIREEARDAEKLAMQSFQEKTTTL 161
D+ Q +QQ+ L SK+ KLQ LEE +++I E R AE LA E TTT
Sbjct: 447 DIAQQLQQSRHLCSKLEAEVSKLQMELEETRTSLRRNIDETKRGAELLAA----ELTTTR 502
Query: 162 EVYQKTLKKMSKQSAQMQAILEQVNS 187
E+ +KT ++M S ++ A+ E ++
Sbjct: 503 ELLKKTNEEMHTMSHELAAVTENCDN 528
>sp|P11532|DMD_HUMAN Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3
Length = 3685
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 142/300 (47%), Gaps = 58/300 (19%)
Query: 34 LEDKISQLNAEIAAYNEVRERELPLVQEVDA-KVKELRQTIQ-DLNKHQVSLRTTLNKLK 91
+++ ++ ++ ++AAY + +VDA ++ + Q IQ DL H++SL + K
Sbjct: 1382 IQESLTFIDKQLAAY---------IADKVDAAQMPQEAQKIQSDLTSHEISLEE-MKKHN 1431
Query: 92 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAM 151
+ A SQ D+ Q Q+ ++ ++ Q P ++ L+E K I +E K+ +
Sbjct: 1432 QGKEAAQRVLSQ--IDVAQKKLQDVSMKFRLFQKPANFEQRLQESKMILDEV----KMHL 1485
Query: 152 QSFQEKTTTLEVYQKTL-------KKMSKQSAQMQAIL---------EQVNSAKSIEKDY 195
+ + K+ EV Q L K +S+ ++++ ++ +Q + K +++
Sbjct: 1486 PALETKSVEQEVVQSQLNHCVNLYKSLSEVKSEVEMVIKTGRQIVQKKQTENPKELDERV 1545
Query: 196 KSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE--DAT-------R 246
+LK N+ L AK+ ER+ ++E+ +L +++ KE N+ +E AT
Sbjct: 1546 TALKLHYNE-------LGAKVTERKQQLEKCLKLSRKMRKEMNVLTEWLAATDMELTKRS 1598
Query: 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVE 306
A E + ++S+ +A QK++E + +IT E G A L+ + K E +VE
Sbjct: 1599 AVEGMPSNLDSEVAWGKATQKEIEKQKVHLKSIT-------EVGEA-LKTVLGKKETLVE 1650
>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3
Length = 3678
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 106/220 (48%), Gaps = 41/220 (18%)
Query: 41 LNAEIAAYNEVRERELPLVQEVDA-KVKELRQTIQ-DLNKHQVSLRTTLNKLKEKTGALD 98
++ ++AAY + +VDA ++ + Q IQ DL H++SL + K + A
Sbjct: 1391 IDKQLAAY---------ITDKVDAAQMPQEAQKIQSDLTSHEISLEE-MKKHNQGKDANQ 1440
Query: 99 EKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKT 158
SQ D+ Q Q+ ++ ++ Q P ++ LEE K I +E K+ + + + K+
Sbjct: 1441 RVLSQ--IDVAQKKLQDVSMKFRLFQKPANFEQRLEESKMILDEV----KMHLPALETKS 1494
Query: 159 TTLEVYQKTL-------KKMSKQSAQMQAIL---------EQVNSAKSIEKDYKSLKARL 202
EV Q L K +S+ ++++ ++ +Q + K +++ +LK
Sbjct: 1495 VEQEVIQSQLSHCVNLYKSLSEVKSEVEMVIKTGRQIVQKKQTENPKELDERVTALKLHY 1554
Query: 203 NDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 242
N+ L AK+ ER+ ++E+ +L +++ KE N+ +E
Sbjct: 1555 NE-------LGAKVTERKQQLEKCLKLSRKMRKEMNVLTE 1587
>sp|P0CP40|NUF2_CRYNJ Probable kinetochore protein NUF2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NUF2 PE=3 SV=1
Length = 467
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 57/201 (28%)
Query: 114 QNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKT----------TTLEV 163
Q +S++VQSP++++R + E A +EK + SFQ+K LEV
Sbjct: 256 QIGSAKSRLVQSPDRIKRHISEMSF----AIQSEKAKLASFQQKARELTNRLEVIGALEV 311
Query: 164 YQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKV 223
+ L + +A E+ +KS +L+AR LE + IE QG
Sbjct: 312 DLRGLIDLEHSIQDQRAKTEEAKRSKS------ALEAR----------LEGRQIESQGLA 355
Query: 224 EQLDELQQQLE----------------KERN------LKSEDATRAFENVKLEMESKRQD 261
+L++LQ+QL+ +ER LK+E RA E + E + +R D
Sbjct: 356 AKLEQLQRQLQNASHKLARQEETRKGMRERGARRIDELKAEYKVRARE--RGEWQKQRDD 413
Query: 262 LEARQKKVEAVVTEVDAITSK 282
L A QK++E +E+ A +K
Sbjct: 414 LLAEQKELE---SEMAAFVTK 431
>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1
Length = 3680
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 109/227 (48%), Gaps = 41/227 (18%)
Query: 34 LEDKISQLNAEIAAYNEVRERELPLVQEVDA-KVKELRQTIQ-DLNKHQVSLRTTLNKLK 91
+++ +S ++ ++AAY + +VDA ++ + Q IQ DL H++SL K
Sbjct: 1384 IQESLSSIDKQLAAY---------IADKVDAAQMPQEAQKIQSDLTSHEISLEEMK---K 1431
Query: 92 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAM 151
G + ++ D+ Q Q+ ++ ++ Q P ++ L+E K I +E K+ +
Sbjct: 1432 HNQGKETAQRVLSQIDVAQKKLQDVSMKFRLFQKPANFEQRLQESKMILDEV----KMHL 1487
Query: 152 QSFQEKTTTLEVYQKTL-------KKMSKQSAQMQAIL---------EQVNSAKSIEKDY 195
+ + K+ EV Q L K +S+ ++++ ++ +Q + K +++
Sbjct: 1488 PALETKSVEQEVVQSQLNHCVNLYKSLSEVKSEVEMVIKTGRQIVQKKQTENPKELDERV 1547
Query: 196 KSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 242
+LK N+ L AK+ ER+ ++E+ +L +++ KE N +E
Sbjct: 1548 TALKLHYNE-------LGAKVTERKQQLEKCLKLSRKMRKEMNALTE 1587
>sp|P0CP41|NUF2_CRYNB Probable kinetochore protein NUF2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NUF2 PE=3 SV=1
Length = 467
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 57/201 (28%)
Query: 114 QNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKT----------TTLEV 163
Q +S++VQSP++++R + E A +EK + SFQ+K LEV
Sbjct: 256 QIGSAKSRLVQSPDRIKRHISEMSF----AIQSEKAKLASFQQKARELTNRLEVIGALEV 311
Query: 164 YQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKV 223
+ L + +A E+ +KS +L+AR LE + IE QG
Sbjct: 312 DLRGLIDLEHSIQDQRAKTEEAKRSKS------ALEAR----------LEGRQIESQGLA 355
Query: 224 EQLDELQQQLE----------------KERN------LKSEDATRAFENVKLEMESKRQD 261
+L++LQ+QL+ +ER LK+E RA E + E + +R D
Sbjct: 356 AKLEQLQRQLQNASHKLARQEETRKGMRERGARRIDELKAEYKVRARE--RGEWQKQRDD 413
Query: 262 LEARQKKVEAVVTEVDAITSK 282
L A QK++E +E+ A +K
Sbjct: 414 LLAEQKELE---SEMAAFVTK 431
>sp|Q95KU9|NEMO_BOVIN NF-kappa-B essential modulator OS=Bos taurus GN=IKBKG PE=1 SV=1
Length = 419
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 103/211 (48%), Gaps = 21/211 (9%)
Query: 111 SVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEK---TTTLEVYQKT 167
+++N +LR I QS + L+ EE + + R+ + MQ FQE L + ++
Sbjct: 54 CLEENQELRDAIRQSNQMLRERCEELQHFQGNQREEKAFLMQKFQEARDLVVRLSLEKRE 113
Query: 168 LKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLD 227
L++ +Q+ L++V K+ ++ KA + V SL +L E Q ++E
Sbjct: 114 LRQQREQA------LKEVERLKTCQQQMAEDKASVKAQVT---SLLGELQESQSRLEAAT 164
Query: 228 ELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQK-KVEAVVTEVDAITSKTKFV 286
+ +Q LE + SE A ++ES+R+ LE R +V+ +V + +++ + +
Sbjct: 165 KERQALESRARVASEKAR--------QLESEREALEQRHSVQVDQLVLQNESMEAALRME 216
Query: 287 KESGAAKLQELASKAEEIVEKFQQYTNSIGT 317
+++ + + ++LA + FQ+Y N + +
Sbjct: 217 RQAASEEKRKLAQLQVAYHQLFQEYDNHMKS 247
>sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle OS=Drosophila melanogaster GN=zip PE=1
SV=2
Length = 2057
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 136/262 (51%), Gaps = 23/262 (8%)
Query: 25 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLR 84
T L++ + LE + + L E+ + N R+ ++ ++++ EL+ + ++ + + L+
Sbjct: 1304 TVLEKAKGTLEAENADLATELRSVNSSRQENDRRRKQAESQIAELQVKLAEIERARSELQ 1363
Query: 85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEAR 144
KL+++ + + + E +V+ +++ S++ ++ + L+ +K + + R
Sbjct: 1364 EKCTKLQQEAENITNQLEEAELKASAAVKSASNMESQLTEAQQLLEEETRQKLGLSSKLR 1423
Query: 145 --DAEKLAMQ-SFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKAR 201
++EK A+Q +E Y++ K+++ + QMQ I ++ + K+ + K R
Sbjct: 1424 QIESEKEALQEQLEEDDEAKRNYER---KLAEVTTQMQEIKKKAEEDADLAKELEEGKKR 1480
Query: 202 LNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQ- 260
LN D+ ++LE ++ E + ++LD+ +++++ E EDAT +E+E++R
Sbjct: 1481 LNKDI---EALERQVKELIAQNDRLDKSKKKIQSE----LEDAT-------IELEAQRTK 1526
Query: 261 --DLEARQKKVEAVVTEVDAIT 280
+LE +QK + ++ E AI+
Sbjct: 1527 VLELEKKQKNFDKILAEEKAIS 1548
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.124 0.304
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,130,600
Number of Sequences: 539616
Number of extensions: 3748796
Number of successful extensions: 44611
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 3740
Number of HSP's that attempted gapping in prelim test: 30691
Number of HSP's gapped (non-prelim): 11255
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)