Query 020385
Match_columns 327
No_of_seqs 126 out of 169
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4438 Centromere-associated 100.0 2.2E-29 4.9E-34 230.0 40.2 318 2-320 118-442 (446)
2 TIGR02168 SMC_prok_B chromosom 99.0 1.5E-05 3.3E-10 86.4 41.3 17 295-311 968-984 (1179)
3 TIGR02168 SMC_prok_B chromosom 98.9 3.2E-05 7E-10 83.8 40.8 8 313-320 975-982 (1179)
4 TIGR00606 rad50 rad50. This fa 98.8 0.00017 3.6E-09 79.4 42.0 228 56-290 849-1091(1311)
5 KOG0161 Myosin class II heavy 98.8 0.00027 5.8E-09 78.2 40.6 83 176-265 1062-1144(1930)
6 PF00038 Filament: Intermediat 98.7 0.00031 6.6E-09 65.3 38.4 109 16-124 5-114 (312)
7 COG1196 Smc Chromosome segrega 98.7 0.00053 1.2E-08 74.6 39.3 99 20-118 672-770 (1163)
8 COG1196 Smc Chromosome segrega 98.6 0.00091 2E-08 72.8 39.7 110 17-126 676-785 (1163)
9 PF00261 Tropomyosin: Tropomyo 98.6 0.00012 2.5E-09 65.4 27.6 108 43-150 8-115 (237)
10 KOG0161 Myosin class II heavy 98.6 0.002 4.2E-08 71.7 41.8 70 247-316 1105-1184(1930)
11 KOG0996 Structural maintenance 98.6 0.00079 1.7E-08 70.2 35.0 245 59-318 794-1045(1293)
12 TIGR00606 rad50 rad50. This fa 98.5 0.0044 9.6E-08 68.4 41.1 20 31-50 711-730 (1311)
13 PRK03918 chromosome segregatio 98.5 0.0033 7.1E-08 66.6 43.2 17 29-45 169-185 (880)
14 PF07888 CALCOCO1: Calcium bin 98.4 0.0023 4.9E-08 62.8 39.7 33 86-118 200-232 (546)
15 PF10174 Cast: RIM-binding pro 98.4 0.0037 8E-08 64.4 38.9 171 98-282 237-407 (775)
16 PRK03918 chromosome segregatio 98.4 0.0059 1.3E-07 64.7 42.3 35 247-281 667-701 (880)
17 PF00261 Tropomyosin: Tropomyo 98.4 0.0017 3.7E-08 57.9 30.2 76 212-291 139-214 (237)
18 PF10174 Cast: RIM-binding pro 98.3 0.0062 1.4E-07 62.7 36.4 97 27-123 327-423 (775)
19 PF07888 CALCOCO1: Calcium bin 98.3 0.0045 9.7E-08 60.8 41.0 94 22-115 143-236 (546)
20 COG1340 Uncharacterized archae 98.3 0.0025 5.5E-08 57.6 37.3 79 59-138 43-121 (294)
21 KOG4674 Uncharacterized conser 98.3 0.014 2.9E-07 64.4 41.2 245 75-322 105-367 (1822)
22 KOG0977 Nuclear envelope prote 98.3 0.0012 2.7E-08 64.6 26.3 248 16-285 100-381 (546)
23 KOG0250 DNA repair protein RAD 98.2 0.011 2.3E-07 61.9 36.0 38 16-53 215-252 (1074)
24 KOG4674 Uncharacterized conser 98.2 0.021 4.6E-07 63.0 40.4 119 20-138 701-819 (1822)
25 KOG0250 DNA repair protein RAD 98.1 0.02 4.3E-07 59.9 35.3 93 213-309 393-485 (1074)
26 KOG0995 Centromere-associated 98.1 0.013 2.9E-07 57.2 41.1 65 58-122 260-324 (581)
27 PF00038 Filament: Intermediat 98.0 0.011 2.4E-07 54.8 37.6 245 16-285 48-301 (312)
28 PRK01156 chromosome segregatio 98.0 0.03 6.4E-07 59.6 41.8 15 36-50 197-211 (895)
29 PHA02562 46 endonuclease subun 98.0 0.02 4.3E-07 57.6 38.4 63 85-147 213-275 (562)
30 KOG0996 Structural maintenance 98.0 0.03 6.6E-07 58.8 34.6 191 80-287 386-583 (1293)
31 PF14915 CCDC144C: CCDC144C pr 98.0 0.012 2.7E-07 53.0 37.3 269 33-314 3-300 (305)
32 KOG0977 Nuclear envelope prote 97.9 0.025 5.4E-07 55.7 31.7 48 8-55 32-82 (546)
33 PRK11637 AmiB activator; Provi 97.8 0.032 7E-07 54.2 27.4 25 26-50 44-68 (428)
34 COG1340 Uncharacterized archae 97.8 0.023 5E-07 51.5 33.3 68 59-126 57-127 (294)
35 PRK01156 chromosome segregatio 97.8 0.077 1.7E-06 56.5 41.2 9 13-21 151-159 (895)
36 PRK04778 septation ring format 97.7 0.062 1.4E-06 54.2 35.8 62 58-119 276-337 (569)
37 KOG0976 Rho/Rac1-interacting s 97.7 0.084 1.8E-06 53.5 39.0 45 140-184 220-264 (1265)
38 KOG0933 Structural maintenance 97.6 0.14 3E-06 53.3 32.4 31 212-242 848-878 (1174)
39 COG1579 Zn-ribbon protein, pos 97.5 0.062 1.3E-06 47.6 22.3 90 107-204 11-100 (239)
40 PHA02562 46 endonuclease subun 97.5 0.14 3E-06 51.4 35.5 26 28-53 173-198 (562)
41 PRK04778 septation ring format 97.5 0.15 3.2E-06 51.5 37.2 59 140-201 281-339 (569)
42 KOG0995 Centromere-associated 97.4 0.16 3.4E-06 49.9 36.5 140 177-322 426-565 (581)
43 KOG0964 Structural maintenance 97.4 0.22 4.9E-06 51.7 32.9 93 58-150 259-351 (1200)
44 PF12128 DUF3584: Protein of u 97.4 0.35 7.5E-06 53.2 40.0 76 58-133 470-545 (1201)
45 KOG0933 Structural maintenance 97.2 0.35 7.6E-06 50.5 35.5 87 104-190 785-871 (1174)
46 PF05701 WEMBL: Weak chloropla 97.2 0.3 6.6E-06 48.7 36.5 66 155-223 288-353 (522)
47 PF09726 Macoilin: Transmembra 97.1 0.41 9E-06 49.3 29.6 37 139-175 543-579 (697)
48 PF05701 WEMBL: Weak chloropla 97.1 0.35 7.5E-06 48.3 40.3 75 162-239 281-355 (522)
49 PF12128 DUF3584: Protein of u 97.0 0.74 1.6E-05 50.7 42.4 102 19-120 604-706 (1201)
50 PF05667 DUF812: Protein of un 97.0 0.44 9.6E-06 48.1 32.2 13 116-128 397-409 (594)
51 COG1579 Zn-ribbon protein, pos 97.0 0.24 5.3E-06 43.9 23.9 46 254-299 111-156 (239)
52 PF14915 CCDC144C: CCDC144C pr 97.0 0.28 6E-06 44.5 37.5 52 65-116 57-108 (305)
53 PRK04863 mukB cell division pr 96.9 0.97 2.1E-05 50.5 40.3 63 5-71 273-335 (1486)
54 PF06160 EzrA: Septation ring 96.9 0.62 1.3E-05 47.0 36.7 85 240-324 445-548 (560)
55 PF01576 Myosin_tail_1: Myosin 96.9 0.00026 5.7E-09 74.3 0.0 68 212-283 382-449 (859)
56 PF01576 Myosin_tail_1: Myosin 96.8 0.00027 5.9E-09 74.2 0.0 67 251-317 466-532 (859)
57 PF09726 Macoilin: Transmembra 96.8 0.8 1.7E-05 47.2 28.5 103 174-286 543-655 (697)
58 KOG0946 ER-Golgi vesicle-tethe 96.8 0.77 1.7E-05 47.0 30.4 34 87-120 680-713 (970)
59 TIGR03185 DNA_S_dndD DNA sulfu 96.7 0.96 2.1E-05 46.5 36.7 100 2-102 146-247 (650)
60 PF15619 Lebercilin: Ciliary p 96.7 0.36 7.9E-06 41.6 24.9 102 22-123 12-113 (194)
61 KOG0976 Rho/Rac1-interacting s 96.6 1.1 2.3E-05 46.0 38.0 60 248-308 374-433 (1265)
62 KOG0964 Structural maintenance 96.6 1.2 2.6E-05 46.6 33.8 53 247-299 447-499 (1200)
63 KOG4643 Uncharacterized coiled 96.6 1.2 2.7E-05 46.6 38.4 31 212-242 479-509 (1195)
64 KOG0018 Structural maintenance 96.5 1.5 3.3E-05 46.3 27.5 27 97-123 702-728 (1141)
65 PF12718 Tropomyosin_1: Tropom 96.4 0.42 9.2E-06 39.1 17.9 58 174-241 78-135 (143)
66 PF15070 GOLGA2L5: Putative go 96.3 1.5 3.2E-05 44.6 37.2 151 17-171 31-183 (617)
67 PF09730 BicD: Microtubule-ass 96.3 1.6 3.4E-05 44.9 38.2 93 58-150 70-179 (717)
68 KOG0971 Microtubule-associated 96.3 1.8 3.8E-05 45.1 38.0 47 218-264 469-515 (1243)
69 KOG0946 ER-Golgi vesicle-tethe 96.3 1.7 3.7E-05 44.6 25.6 29 213-241 854-882 (970)
70 COG4942 Membrane-bound metallo 96.2 1.2 2.6E-05 42.6 29.6 61 29-89 38-98 (420)
71 PF05622 HOOK: HOOK protein; 96.2 0.0012 2.6E-08 68.3 0.0 46 265-310 627-672 (713)
72 COG3883 Uncharacterized protei 96.2 0.9 2E-05 40.8 27.5 67 72-138 46-112 (265)
73 PF06008 Laminin_I: Laminin Do 96.1 1 2.2E-05 40.8 32.0 121 58-190 53-174 (264)
74 PF10473 CENP-F_leu_zip: Leuci 96.1 0.62 1.3E-05 37.9 17.5 100 19-118 7-106 (140)
75 PF12718 Tropomyosin_1: Tropom 96.0 0.69 1.5E-05 37.9 20.6 90 146-242 12-101 (143)
76 COG5185 HEC1 Protein involved 95.9 1.8 3.8E-05 41.8 36.0 89 32-124 267-355 (622)
77 KOG0612 Rho-associated, coiled 95.8 3.5 7.7E-05 44.3 30.0 59 60-118 468-527 (1317)
78 TIGR02680 conserved hypothetic 95.6 4.9 0.00011 45.0 33.2 116 164-286 846-961 (1353)
79 PF15619 Lebercilin: Ciliary p 95.6 1.3 2.8E-05 38.2 24.8 55 212-266 130-184 (194)
80 PF10481 CENP-F_N: Cenp-F N-te 95.6 0.46 9.9E-06 42.5 13.3 114 15-128 18-131 (307)
81 KOG0994 Extracellular matrix g 95.6 4.1 8.9E-05 43.6 35.7 29 161-189 1583-1611(1758)
82 PRK04863 mukB cell division pr 95.5 5.5 0.00012 44.8 38.2 107 16-122 787-903 (1486)
83 KOG0971 Microtubule-associated 95.5 3.9 8.4E-05 42.7 38.8 23 295-317 524-546 (1243)
84 PRK09039 hypothetical protein; 95.5 2.3 5E-05 40.1 21.3 43 247-289 138-180 (343)
85 PF06160 EzrA: Septation ring 95.4 3.5 7.6E-05 41.6 40.5 58 140-200 277-334 (560)
86 KOG0963 Transcription factor/C 95.3 3.5 7.7E-05 41.2 36.3 54 264-317 282-335 (629)
87 PF14662 CCDC155: Coiled-coil 95.3 1.7 3.6E-05 37.1 22.4 57 63-119 66-122 (193)
88 PF07111 HCR: Alpha helical co 95.2 4 8.6E-05 41.4 34.4 69 58-126 163-232 (739)
89 PF06705 SF-assemblin: SF-asse 95.2 2.2 4.7E-05 38.3 33.4 45 277-321 200-244 (247)
90 TIGR03185 DNA_S_dndD DNA sulfu 95.2 4.4 9.5E-05 41.7 34.4 10 306-315 509-518 (650)
91 PF05557 MAD: Mitotic checkpoi 95.1 0.086 1.9E-06 54.8 8.6 42 264-305 603-644 (722)
92 KOG0999 Microtubule-associated 95.1 3.9 8.4E-05 40.3 25.7 60 165-231 173-232 (772)
93 PF05010 TACC: Transforming ac 95.1 2.1 4.6E-05 37.2 28.6 123 166-308 80-205 (207)
94 PF15066 CAGE1: Cancer-associa 95.0 3.6 7.7E-05 39.7 27.6 163 125-308 363-526 (527)
95 PF05557 MAD: Mitotic checkpoi 95.0 0.0063 1.4E-07 63.1 0.0 14 299-312 413-426 (722)
96 PF08317 Spc7: Spc7 kinetochor 95.0 3.1 6.8E-05 38.9 29.7 52 257-308 241-292 (325)
97 PF11559 ADIP: Afadin- and alp 95.0 1.7 3.7E-05 35.7 18.0 49 261-309 102-150 (151)
98 PF05622 HOOK: HOOK protein; 94.9 0.0072 1.6E-07 62.5 0.0 24 157-180 303-326 (713)
99 COG5185 HEC1 Protein involved 94.8 4.1 8.9E-05 39.4 31.2 106 17-126 332-437 (622)
100 PF05483 SCP-1: Synaptonemal c 94.8 5.2 0.00011 40.5 40.6 55 257-311 711-765 (786)
101 PF13851 GAS: Growth-arrest sp 94.8 2.5 5.3E-05 36.7 26.2 77 129-208 32-108 (201)
102 PF09789 DUF2353: Uncharacteri 94.8 3.4 7.4E-05 38.3 23.0 86 39-124 12-111 (319)
103 KOG1029 Endocytic adaptor prot 94.8 5.8 0.00012 40.8 35.2 102 194-302 487-591 (1118)
104 KOG0018 Structural maintenance 94.6 7.6 0.00016 41.3 27.7 67 212-282 400-466 (1141)
105 PF04156 IncA: IncA protein; 94.5 2.3 5E-05 36.3 14.6 7 3-9 57-63 (191)
106 KOG0994 Extracellular matrix g 94.4 8.7 0.00019 41.3 33.2 48 155-202 1525-1572(1758)
107 PF06785 UPF0242: Uncharacteri 94.4 4.2 9.2E-05 37.5 19.5 111 158-282 74-184 (401)
108 KOG1003 Actin filament-coating 94.3 3.1 6.7E-05 35.5 25.7 120 27-146 9-128 (205)
109 COG4477 EzrA Negative regulato 94.2 6.3 0.00014 38.8 31.4 26 291-316 515-540 (570)
110 PF05010 TACC: Transforming ac 94.2 3.5 7.6E-05 35.9 27.6 69 222-290 137-205 (207)
111 PF14662 CCDC155: Coiled-coil 94.2 3.2 6.9E-05 35.4 26.6 51 164-224 90-140 (193)
112 KOG0978 E3 ubiquitin ligase in 94.2 7.7 0.00017 39.7 26.9 31 212-242 585-615 (698)
113 PF08614 ATG16: Autophagy prot 94.0 0.95 2.1E-05 39.0 11.2 76 43-118 102-177 (194)
114 PRK15422 septal ring assembly 93.9 1.5 3.3E-05 31.6 10.0 70 24-107 6-75 (79)
115 PF09730 BicD: Microtubule-ass 93.9 9 0.0002 39.6 39.7 65 17-81 57-121 (717)
116 PRK09039 hypothetical protein; 93.8 5.9 0.00013 37.3 23.7 27 105-131 45-71 (343)
117 KOG4643 Uncharacterized coiled 93.8 11 0.00023 40.1 38.2 33 19-51 254-286 (1195)
118 KOG0980 Actin-binding protein 93.8 10 0.00022 39.6 33.3 25 25-49 329-353 (980)
119 PF03962 Mnd1: Mnd1 family; I 93.8 4 8.6E-05 35.0 14.5 103 14-124 61-167 (188)
120 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.5 3.3 7.2E-05 33.3 17.7 83 108-190 5-87 (132)
121 COG0419 SbcC ATPase involved i 93.4 13 0.00028 39.9 38.6 22 59-81 205-226 (908)
122 PF04849 HAP1_N: HAP1 N-termin 93.4 6.4 0.00014 36.3 27.0 10 129-138 165-174 (306)
123 PF13851 GAS: Growth-arrest sp 93.3 5 0.00011 34.8 25.9 13 108-120 29-41 (201)
124 PF09728 Taxilin: Myosin-like 93.2 7 0.00015 36.3 36.0 20 212-231 214-233 (309)
125 PF05483 SCP-1: Synaptonemal c 93.2 11 0.00024 38.3 40.8 62 254-315 406-473 (786)
126 KOG1029 Endocytic adaptor prot 93.1 12 0.00026 38.6 30.9 28 247-274 550-577 (1118)
127 PF05667 DUF812: Protein of un 93.0 11 0.00025 38.1 33.7 98 19-120 325-422 (594)
128 COG4372 Uncharacterized protei 92.9 8.6 0.00019 36.3 32.3 35 155-189 203-237 (499)
129 smart00787 Spc7 Spc7 kinetocho 92.7 8.4 0.00018 35.8 27.4 31 53-83 59-89 (312)
130 KOG0963 Transcription factor/C 92.7 12 0.00026 37.5 33.2 56 20-79 105-160 (629)
131 KOG4673 Transcription factor T 92.7 13 0.00028 37.8 35.9 68 63-130 408-477 (961)
132 PF10146 zf-C4H2: Zinc finger- 92.5 7.3 0.00016 34.5 14.7 11 275-285 89-99 (230)
133 PF04111 APG6: Autophagy prote 92.4 4.1 8.8E-05 37.9 13.5 94 28-121 42-135 (314)
134 KOG0979 Structural maintenance 92.4 17 0.00037 38.6 28.3 54 85-138 181-236 (1072)
135 COG3074 Uncharacterized protei 92.3 2.8 6E-05 29.4 9.8 48 24-71 6-53 (79)
136 TIGR02680 conserved hypothetic 92.3 23 0.00049 39.8 33.1 35 17-51 744-778 (1353)
137 PF08317 Spc7: Spc7 kinetochor 92.3 9.7 0.00021 35.6 29.4 26 32-57 78-103 (325)
138 PF15070 GOLGA2L5: Putative go 92.3 15 0.00032 37.6 36.4 33 210-242 198-230 (617)
139 TIGR00634 recN DNA repair prot 92.2 14 0.00031 37.2 21.0 35 95-129 269-303 (563)
140 COG3883 Uncharacterized protei 92.1 8.7 0.00019 34.6 24.3 11 216-226 178-188 (265)
141 COG4372 Uncharacterized protei 92.1 11 0.00024 35.7 32.4 62 247-308 239-300 (499)
142 smart00787 Spc7 Spc7 kinetocho 91.8 11 0.00024 35.0 19.4 30 278-307 257-286 (312)
143 COG4942 Membrane-bound metallo 91.7 13 0.00028 35.8 32.8 46 67-112 62-107 (420)
144 PRK10884 SH3 domain-containing 91.0 8 0.00017 33.7 12.9 75 216-290 95-169 (206)
145 KOG0962 DNA repair protein RAD 91.0 28 0.00061 38.3 38.6 33 253-285 1041-1073(1294)
146 PF12325 TMF_TATA_bd: TATA ele 90.7 7.1 0.00015 30.9 14.7 41 247-294 76-116 (120)
147 KOG0999 Microtubule-associated 90.6 19 0.00041 35.7 31.1 106 161-270 106-211 (772)
148 PF06008 Laminin_I: Laminin Do 90.6 13 0.00027 33.6 30.3 49 65-113 67-115 (264)
149 PRK15422 septal ring assembly 90.3 4.7 0.0001 29.1 8.9 67 67-133 7-73 (79)
150 PF05911 DUF869: Plant protein 90.3 26 0.00057 36.7 24.9 57 64-120 502-558 (769)
151 KOG1003 Actin filament-coating 90.2 11 0.00024 32.2 26.5 57 72-128 5-61 (205)
152 PF10498 IFT57: Intra-flagella 89.6 13 0.00028 35.3 14.0 100 36-138 241-342 (359)
153 COG4026 Uncharacterized protei 89.4 11 0.00023 33.0 12.0 99 13-118 126-225 (290)
154 PRK10884 SH3 domain-containing 89.3 10 0.00022 33.0 12.2 36 16-51 80-115 (206)
155 PF04849 HAP1_N: HAP1 N-termin 89.1 18 0.0004 33.3 24.2 20 247-266 277-296 (306)
156 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.7 11 0.00024 30.2 19.6 47 220-266 72-118 (132)
157 COG1382 GimC Prefoldin, chaper 88.7 10 0.00022 29.9 12.0 86 13-98 11-111 (119)
158 PF15066 CAGE1: Cancer-associa 88.1 27 0.00058 33.9 27.0 79 41-119 315-396 (527)
159 KOG0243 Kinesin-like protein [ 88.1 42 0.0009 36.1 32.7 96 31-126 406-510 (1041)
160 PF04111 APG6: Autophagy prote 87.9 16 0.00034 34.1 13.3 16 292-307 169-184 (314)
161 COG1382 GimC Prefoldin, chaper 87.9 12 0.00025 29.6 11.4 43 156-198 7-49 (119)
162 PRK10869 recombination and rep 87.6 34 0.00073 34.6 23.1 24 26-49 154-177 (553)
163 KOG4673 Transcription factor T 87.6 36 0.00077 34.8 35.1 40 65-104 403-442 (961)
164 PF09787 Golgin_A5: Golgin sub 87.6 32 0.0007 34.3 25.8 70 248-318 276-356 (511)
165 PRK11281 hypothetical protein; 87.2 51 0.0011 36.2 28.5 56 69-124 126-181 (1113)
166 PF11559 ADIP: Afadin- and alp 87.0 15 0.00033 30.0 16.1 8 112-119 139-146 (151)
167 PF06005 DUF904: Protein of un 86.7 9.5 0.0002 27.3 10.0 24 27-50 9-32 (72)
168 KOG4360 Uncharacterized coiled 86.7 23 0.00049 34.9 13.6 89 22-110 212-300 (596)
169 PF10481 CENP-F_N: Cenp-F N-te 86.6 24 0.00052 31.8 18.9 55 146-203 79-133 (307)
170 PF07106 TBPIP: Tat binding pr 86.1 11 0.00025 31.4 10.4 79 58-136 73-154 (169)
171 KOG2991 Splicing regulator [RN 85.8 25 0.00055 31.4 20.3 66 70-135 107-172 (330)
172 PF06005 DUF904: Protein of un 85.8 11 0.00023 27.0 10.6 62 212-277 9-70 (72)
173 COG0419 SbcC ATPase involved i 85.8 55 0.0012 35.2 43.0 31 17-47 279-309 (908)
174 KOG1962 B-cell receptor-associ 85.0 21 0.00046 31.2 11.5 62 62-123 149-210 (216)
175 PF13870 DUF4201: Domain of un 84.7 23 0.00049 29.8 20.4 65 58-129 43-107 (177)
176 PLN02939 transferase, transfer 84.7 62 0.0013 34.8 29.7 127 60-190 131-285 (977)
177 COG3074 Uncharacterized protei 84.4 12 0.00026 26.3 9.5 29 161-189 3-31 (79)
178 PRK09343 prefoldin subunit bet 83.4 20 0.00044 28.3 13.1 46 154-199 6-51 (121)
179 KOG0962 DNA repair protein RAD 83.4 78 0.0017 35.0 38.0 9 308-316 1107-1115(1294)
180 COG2433 Uncharacterized conser 83.0 43 0.00093 33.8 13.9 24 264-287 485-508 (652)
181 TIGR01843 type_I_hlyD type I s 82.9 45 0.00097 31.8 21.4 26 27-52 79-104 (423)
182 PF09789 DUF2353: Uncharacteri 82.9 40 0.00088 31.4 21.3 92 218-317 130-228 (319)
183 PF13870 DUF4201: Domain of un 82.3 29 0.00062 29.2 20.3 85 194-282 50-134 (177)
184 PF10212 TTKRSYEDQ: Predicted 82.1 56 0.0012 32.4 14.3 100 17-119 415-514 (518)
185 TIGR02338 gimC_beta prefoldin, 82.1 21 0.00046 27.5 12.2 42 157-198 5-46 (110)
186 PF12325 TMF_TATA_bd: TATA ele 82.0 23 0.00051 28.0 14.3 11 256-266 92-102 (120)
187 KOG4438 Centromere-associated 80.3 58 0.0012 31.4 35.9 106 183-288 276-401 (446)
188 PF02403 Seryl_tRNA_N: Seryl-t 80.2 24 0.00052 27.0 10.2 22 29-50 29-50 (108)
189 PRK11281 hypothetical protein; 79.8 1E+02 0.0022 34.0 28.2 41 88-128 131-171 (1113)
190 TIGR01005 eps_transp_fam exopo 79.7 84 0.0018 32.9 24.4 28 24-51 196-223 (754)
191 KOG1850 Myosin-like coiled-coi 79.7 52 0.0011 30.5 30.8 60 129-188 206-269 (391)
192 KOG0980 Actin-binding protein 79.6 88 0.0019 33.1 35.3 31 152-182 435-465 (980)
193 PF15035 Rootletin: Ciliary ro 79.0 40 0.00086 28.8 19.6 45 263-307 137-181 (182)
194 PF13514 AAA_27: AAA domain 78.9 1.1E+02 0.0024 33.8 40.6 107 18-124 655-775 (1111)
195 TIGR00634 recN DNA repair prot 78.8 77 0.0017 32.0 25.4 56 13-69 146-201 (563)
196 KOG3478 Prefoldin subunit 6, K 78.8 28 0.00061 26.9 13.5 45 154-198 4-48 (120)
197 PF09744 Jnk-SapK_ap_N: JNK_SA 78.5 38 0.00082 28.2 12.6 120 14-133 35-158 (158)
198 COG2433 Uncharacterized conser 78.1 70 0.0015 32.3 13.6 34 247-280 475-508 (652)
199 PF10212 TTKRSYEDQ: Predicted 78.1 76 0.0016 31.5 14.7 96 168-280 419-514 (518)
200 KOG0249 LAR-interacting protei 77.7 91 0.002 32.2 20.5 64 247-317 217-280 (916)
201 PF02403 Seryl_tRNA_N: Seryl-t 77.6 29 0.00063 26.5 10.2 32 20-51 27-58 (108)
202 TIGR03007 pepcterm_ChnLen poly 77.4 78 0.0017 31.3 22.4 15 170-184 276-290 (498)
203 KOG0978 E3 ubiquitin ligase in 77.4 93 0.002 32.2 37.7 102 214-319 461-586 (698)
204 PF06818 Fez1: Fez1; InterPro 76.9 49 0.0011 28.7 17.5 15 89-103 14-28 (202)
205 cd00632 Prefoldin_beta Prefold 76.2 32 0.0007 26.2 11.7 40 159-198 3-42 (105)
206 PRK10869 recombination and rep 76.1 92 0.002 31.5 26.2 30 81-110 167-196 (553)
207 KOG1937 Uncharacterized conser 75.9 81 0.0018 30.7 33.9 51 85-135 286-336 (521)
208 KOG1853 LIS1-interacting prote 74.7 63 0.0014 28.9 19.9 33 142-174 113-145 (333)
209 PF07106 TBPIP: Tat binding pr 74.6 27 0.0006 29.1 8.9 63 16-83 73-135 (169)
210 PF12329 TMF_DNA_bd: TATA elem 74.5 29 0.00063 24.9 9.8 44 33-76 9-52 (74)
211 KOG1853 LIS1-interacting prote 73.7 67 0.0015 28.7 18.0 38 16-53 46-83 (333)
212 PF11932 DUF3450: Protein of u 73.6 67 0.0015 28.7 17.0 20 58-77 57-76 (251)
213 PF15290 Syntaphilin: Golgi-lo 72.3 77 0.0017 28.8 12.1 41 257-297 105-147 (305)
214 TIGR02338 gimC_beta prefoldin, 72.2 43 0.00093 25.8 12.1 39 16-54 4-42 (110)
215 PF13747 DUF4164: Domain of un 71.7 39 0.00084 25.2 9.6 53 81-133 35-87 (89)
216 PRK02119 hypothetical protein; 71.7 32 0.00068 24.6 7.2 43 27-69 7-49 (73)
217 TIGR02449 conserved hypothetic 71.5 32 0.00069 24.1 8.2 32 20-51 5-36 (65)
218 PF14197 Cep57_CLD_2: Centroso 70.9 34 0.00074 24.2 8.7 55 65-119 6-60 (69)
219 PF05278 PEARLI-4: Arabidopsis 70.8 83 0.0018 28.5 11.5 23 96-118 232-254 (269)
220 PF04102 SlyX: SlyX; InterPro 70.5 24 0.00053 24.8 6.4 46 29-74 4-49 (69)
221 TIGR03007 pepcterm_ChnLen poly 70.2 1.2E+02 0.0025 30.0 25.2 30 23-52 162-191 (498)
222 PF03962 Mnd1: Mnd1 family; I 70.1 70 0.0015 27.4 13.4 24 292-315 135-158 (188)
223 PF09755 DUF2046: Uncharacteri 69.9 93 0.002 28.8 34.4 39 247-285 255-293 (310)
224 PF00170 bZIP_1: bZIP transcri 69.9 23 0.00051 24.3 6.2 43 8-50 19-61 (64)
225 PRK04406 hypothetical protein; 69.4 39 0.00085 24.3 7.6 26 28-53 10-35 (75)
226 PF09304 Cortex-I_coil: Cortex 69.3 50 0.0011 25.4 13.4 70 29-105 9-78 (107)
227 TIGR02449 conserved hypothetic 69.1 36 0.00079 23.8 9.0 58 218-279 4-61 (65)
228 TIGR01005 eps_transp_fam exopo 69.1 1.5E+02 0.0033 31.0 25.2 30 33-62 191-220 (754)
229 PF15397 DUF4618: Domain of un 68.3 92 0.002 28.1 26.7 38 88-125 77-114 (258)
230 PF12777 MT: Microtubule-bindi 67.9 42 0.00092 31.6 9.4 96 41-136 219-314 (344)
231 PF07889 DUF1664: Protein of u 67.7 61 0.0013 25.8 12.7 37 251-287 87-123 (126)
232 smart00338 BRLZ basic region l 67.5 25 0.00054 24.2 5.9 43 8-50 19-61 (65)
233 PF06818 Fez1: Fez1; InterPro 67.1 84 0.0018 27.2 20.5 104 14-118 3-106 (202)
234 PF02183 HALZ: Homeobox associ 66.6 28 0.00061 22.4 5.5 36 16-51 6-41 (45)
235 TIGR01010 BexC_CtrB_KpsE polys 66.6 1.2E+02 0.0025 28.7 12.7 53 26-78 211-263 (362)
236 PF01920 Prefoldin_2: Prefoldi 66.4 53 0.0011 24.6 10.9 43 159-201 2-44 (106)
237 PF09787 Golgin_A5: Golgin sub 66.3 1.5E+02 0.0032 29.7 31.8 114 66-187 189-313 (511)
238 PF08581 Tup_N: Tup N-terminal 66.3 48 0.001 24.1 12.0 28 273-300 45-72 (79)
239 PRK00295 hypothetical protein; 66.0 44 0.00094 23.5 7.3 40 30-69 6-45 (68)
240 PF08581 Tup_N: Tup N-terminal 65.8 49 0.0011 24.1 12.0 70 240-309 5-74 (79)
241 smart00502 BBC B-Box C-termina 65.1 60 0.0013 24.8 14.3 65 82-146 4-69 (127)
242 PF09304 Cortex-I_coil: Cortex 65.0 62 0.0013 24.9 13.7 71 18-102 19-89 (107)
243 PF04012 PspA_IM30: PspA/IM30 64.8 95 0.0021 27.0 22.6 114 6-122 3-121 (221)
244 PF04012 PspA_IM30: PspA/IM30 64.7 95 0.0021 27.0 20.9 14 125-138 23-37 (221)
245 PRK04325 hypothetical protein; 63.5 52 0.0011 23.5 7.4 22 30-51 10-31 (74)
246 PF04100 Vps53_N: Vps53-like, 63.5 1.4E+02 0.0031 28.6 18.2 67 98-168 56-125 (383)
247 PF04728 LPP: Lipoprotein leuc 63.4 44 0.00095 22.6 8.1 49 264-312 7-55 (56)
248 cd00632 Prefoldin_beta Prefold 63.3 65 0.0014 24.5 11.8 29 22-50 6-34 (105)
249 PF10168 Nup88: Nuclear pore c 62.8 2E+02 0.0044 30.1 21.1 40 64-103 579-618 (717)
250 PRK09973 putative outer membra 62.4 61 0.0013 23.9 7.5 50 57-106 24-73 (85)
251 PRK04325 hypothetical protein; 62.1 55 0.0012 23.4 6.9 47 41-87 7-53 (74)
252 PF05384 DegS: Sensor protein 61.9 93 0.002 25.9 19.6 22 169-190 77-98 (159)
253 PF10498 IFT57: Intra-flagella 61.8 1.5E+02 0.0032 28.2 19.1 12 296-307 332-343 (359)
254 PRK00736 hypothetical protein; 61.7 53 0.0012 23.1 7.2 33 30-62 6-38 (68)
255 PRK02793 phi X174 lysis protei 61.4 56 0.0012 23.2 7.4 41 29-69 8-48 (72)
256 PF15254 CCDC14: Coiled-coil d 61.2 2.2E+02 0.0047 29.9 19.8 55 32-86 390-456 (861)
257 KOG2264 Exostosin EXT1L [Signa 61.2 66 0.0014 32.3 9.2 56 58-113 94-149 (907)
258 PF10205 KLRAQ: Predicted coil 60.9 73 0.0016 24.4 10.3 45 35-79 4-48 (102)
259 TIGR03545 conserved hypothetic 60.9 1.4E+02 0.003 30.3 11.9 52 97-148 217-269 (555)
260 PF10205 KLRAQ: Predicted coil 60.8 73 0.0016 24.4 9.5 65 59-123 7-71 (102)
261 PRK04406 hypothetical protein; 60.6 60 0.0013 23.3 7.9 48 40-87 8-55 (75)
262 PF06156 DUF972: Protein of un 59.9 71 0.0015 24.7 7.7 40 34-73 6-45 (107)
263 PF10046 BLOC1_2: Biogenesis o 59.9 73 0.0016 24.1 10.5 55 132-190 25-80 (99)
264 PF05266 DUF724: Protein of un 59.7 1.1E+02 0.0025 26.2 15.8 12 215-226 132-143 (190)
265 PF04102 SlyX: SlyX; InterPro 59.7 51 0.0011 23.1 6.3 44 44-87 5-48 (69)
266 PF09728 Taxilin: Myosin-like 59.5 1.5E+02 0.0032 27.5 39.7 53 22-74 15-67 (309)
267 PRK02119 hypothetical protein; 59.4 62 0.0014 23.1 7.5 48 40-87 6-53 (73)
268 PF05266 DUF724: Protein of un 59.1 1.2E+02 0.0025 26.1 13.7 53 67-119 127-179 (190)
269 PRK03947 prefoldin subunit alp 59.1 92 0.002 24.9 12.9 35 16-50 7-41 (140)
270 PF15188 CCDC-167: Coiled-coil 58.6 45 0.00098 24.6 6.0 41 164-204 7-47 (85)
271 PF04582 Reo_sigmaC: Reovirus 57.8 12 0.00026 34.8 3.5 33 86-118 85-117 (326)
272 PF01920 Prefoldin_2: Prefoldi 57.7 78 0.0017 23.7 11.0 77 16-92 6-97 (106)
273 PF05529 Bap31: B-cell recepto 57.6 1.2E+02 0.0026 25.8 12.0 43 8-50 97-139 (192)
274 TIGR01843 type_I_hlyD type I s 57.3 1.8E+02 0.0038 27.7 25.5 28 20-47 79-106 (423)
275 PF05911 DUF869: Plant protein 56.9 2.6E+02 0.0057 29.5 24.9 39 88-126 606-644 (769)
276 PRK03947 prefoldin subunit alp 56.8 1E+02 0.0022 24.7 13.8 45 155-199 6-50 (140)
277 COG4717 Uncharacterized conser 56.8 2.7E+02 0.0059 29.6 35.1 77 212-290 779-855 (984)
278 KOG0979 Structural maintenance 56.6 2.9E+02 0.0063 29.9 33.6 60 247-316 864-923 (1072)
279 PF00769 ERM: Ezrin/radixin/mo 56.6 1.5E+02 0.0032 26.5 15.7 92 25-116 8-99 (246)
280 PF11932 DUF3450: Protein of u 56.5 1.5E+02 0.0032 26.5 17.1 15 275-289 132-146 (251)
281 PF13874 Nup54: Nucleoporin co 56.5 97 0.0021 25.0 8.4 58 49-106 36-93 (141)
282 PF05529 Bap31: B-cell recepto 56.4 83 0.0018 26.8 8.4 35 3-37 106-140 (192)
283 PF08647 BRE1: BRE1 E3 ubiquit 56.4 84 0.0018 23.6 12.2 74 19-92 7-80 (96)
284 COG0497 RecN ATPase involved i 56.3 2.3E+02 0.005 28.6 23.7 36 15-50 164-199 (557)
285 PF07352 Phage_Mu_Gam: Bacteri 56.2 1.1E+02 0.0024 24.9 9.0 57 257-316 7-63 (149)
286 KOG4603 TBP-1 interacting prot 56.1 1.2E+02 0.0027 25.5 9.7 22 25-46 89-110 (201)
287 COG5570 Uncharacterized small 56.0 33 0.00071 22.7 4.3 22 100-121 34-55 (57)
288 PF09738 DUF2051: Double stran 56.0 1.7E+02 0.0037 27.1 13.2 54 58-111 113-166 (302)
289 PF15294 Leu_zip: Leucine zipp 55.9 1.6E+02 0.0035 26.8 16.5 38 83-120 130-167 (278)
290 PRK13169 DNA replication intia 54.7 96 0.0021 24.1 7.6 46 33-78 5-50 (110)
291 PRK15178 Vi polysaccharide exp 53.7 2.2E+02 0.0049 27.8 12.9 65 15-80 273-337 (434)
292 PF10224 DUF2205: Predicted co 53.7 80 0.0017 23.1 6.6 34 89-122 27-60 (80)
293 PF14992 TMCO5: TMCO5 family 53.6 1.8E+02 0.0039 26.6 15.4 35 17-51 13-47 (280)
294 PRK11546 zraP zinc resistance 53.2 1.2E+02 0.0027 24.7 10.0 30 267-296 89-118 (143)
295 PF02994 Transposase_22: L1 tr 53.2 43 0.00093 32.0 6.6 8 69-76 110-117 (370)
296 PF09738 DUF2051: Double stran 53.2 1.9E+02 0.0041 26.8 14.4 94 17-110 86-179 (302)
297 PF12795 MscS_porin: Mechanose 52.9 1.6E+02 0.0036 25.9 25.8 100 85-187 31-138 (240)
298 PF10267 Tmemb_cc2: Predicted 52.8 2.2E+02 0.0048 27.4 16.0 105 65-175 213-318 (395)
299 PF04728 LPP: Lipoprotein leuc 52.7 70 0.0015 21.6 8.2 41 61-101 7-47 (56)
300 PF06428 Sec2p: GDP/GTP exchan 52.6 28 0.00061 26.6 4.3 75 51-125 9-84 (100)
301 TIGR03752 conj_TIGR03752 integ 52.5 2E+02 0.0044 28.3 11.0 34 17-50 61-94 (472)
302 KOG4571 Activating transcripti 52.3 42 0.00092 30.6 6.0 45 7-51 240-284 (294)
303 PF10224 DUF2205: Predicted co 52.1 91 0.002 22.8 7.1 48 31-78 18-65 (80)
304 KOG3091 Nuclear pore complex, 51.9 2.5E+02 0.0054 27.8 15.5 92 17-108 336-427 (508)
305 PRK10698 phage shock protein P 51.7 1.7E+02 0.0036 25.7 20.4 19 125-143 24-43 (222)
306 KOG4360 Uncharacterized coiled 51.7 2.6E+02 0.0056 27.9 21.7 59 166-234 202-260 (596)
307 PHA03011 hypothetical protein; 51.7 1E+02 0.0023 23.3 8.2 36 15-50 57-92 (120)
308 TIGR03752 conj_TIGR03752 integ 51.5 2.5E+02 0.0055 27.7 11.5 21 83-103 114-134 (472)
309 PRK02793 phi X174 lysis protei 51.2 87 0.0019 22.3 7.5 47 41-87 6-52 (72)
310 TIGR02231 conserved hypothetic 50.9 2E+02 0.0042 28.8 11.3 31 17-47 73-103 (525)
311 PF06785 UPF0242: Uncharacteri 50.7 2.2E+02 0.0047 26.7 18.8 36 154-189 112-147 (401)
312 PRK00295 hypothetical protein; 50.5 86 0.0019 22.0 7.3 45 43-87 5-49 (68)
313 PF04582 Reo_sigmaC: Reovirus 50.5 25 0.00055 32.7 4.4 21 169-189 133-153 (326)
314 PF10168 Nup88: Nuclear pore c 49.5 3.3E+02 0.0072 28.5 21.1 20 295-314 688-707 (717)
315 KOG4593 Mitotic checkpoint pro 49.2 3.2E+02 0.007 28.3 34.8 21 265-285 434-454 (716)
316 PLN02939 transferase, transfer 48.9 3.9E+02 0.0084 29.1 26.2 23 25-47 159-181 (977)
317 COG4477 EzrA Negative regulato 48.7 2.9E+02 0.0064 27.6 32.5 31 16-46 105-135 (570)
318 TIGR00293 prefoldin, archaeal 48.5 1.3E+02 0.0028 23.5 10.7 35 164-198 8-42 (126)
319 PF04912 Dynamitin: Dynamitin 48.2 2.5E+02 0.0055 26.8 26.0 55 22-76 87-144 (388)
320 PF14712 Snapin_Pallidin: Snap 48.1 1.1E+02 0.0023 22.5 10.4 32 19-50 18-49 (92)
321 PF02994 Transposase_22: L1 tr 47.7 83 0.0018 30.0 7.6 8 131-138 47-54 (370)
322 PF04129 Vps52: Vps52 / Sac2 f 47.4 3E+02 0.0066 27.4 12.0 47 155-204 7-53 (508)
323 PF04977 DivIC: Septum formati 47.3 80 0.0017 22.2 6.0 27 92-118 24-50 (80)
324 PF10226 DUF2216: Uncharacteri 46.8 1.9E+02 0.004 24.8 11.0 77 16-92 42-136 (195)
325 KOG1962 B-cell receptor-associ 46.6 2E+02 0.0044 25.2 12.9 32 251-282 163-194 (216)
326 PF06156 DUF972: Protein of un 46.4 1.4E+02 0.0029 23.1 7.5 16 60-75 39-54 (107)
327 PF13514 AAA_27: AAA domain 46.1 4.5E+02 0.0098 29.1 40.4 70 69-138 664-737 (1111)
328 TIGR02894 DNA_bind_RsfA transc 45.3 1.8E+02 0.0039 24.2 10.0 12 171-182 82-93 (161)
329 PRK00736 hypothetical protein; 45.3 1.1E+02 0.0023 21.5 7.2 43 45-87 7-49 (68)
330 COG1842 PspA Phage shock prote 45.2 2.2E+02 0.0047 25.2 20.4 72 5-79 3-74 (225)
331 PF08172 CASP_C: CASP C termin 45.1 2.3E+02 0.005 25.4 11.8 34 18-51 2-35 (248)
332 PRK15396 murein lipoprotein; P 45.1 1.2E+02 0.0026 22.0 8.0 52 261-312 26-77 (78)
333 PF10267 Tmemb_cc2: Predicted 45.1 2.9E+02 0.0064 26.6 15.9 30 231-260 261-290 (395)
334 PF05531 NPV_P10: Nucleopolyhe 44.7 1.2E+02 0.0025 21.9 7.1 42 163-204 5-46 (75)
335 TIGR03545 conserved hypothetic 44.6 3.4E+02 0.0075 27.5 11.7 42 105-146 190-231 (555)
336 PHA03011 hypothetical protein; 44.0 1.4E+02 0.0031 22.7 8.1 36 86-121 79-114 (120)
337 PRK05431 seryl-tRNA synthetase 43.9 2.4E+02 0.0052 27.4 10.3 30 161-190 27-56 (425)
338 PRK15396 murein lipoprotein; P 43.5 1.3E+02 0.0027 21.9 7.4 44 58-101 26-69 (78)
339 PF14282 FlxA: FlxA-like prote 43.1 1.5E+02 0.0033 22.7 8.0 51 28-78 18-72 (106)
340 PF08826 DMPK_coil: DMPK coile 42.9 1.1E+02 0.0024 21.1 7.8 35 85-119 18-52 (61)
341 PRK09343 prefoldin subunit bet 42.5 1.7E+02 0.0036 23.0 12.6 32 19-50 11-42 (121)
342 PF14712 Snapin_Pallidin: Snap 42.4 1.3E+02 0.0029 22.0 9.7 42 58-99 8-49 (92)
343 PF08647 BRE1: BRE1 E3 ubiquit 42.1 1.5E+02 0.0032 22.3 11.5 36 92-127 38-73 (96)
344 PRK00846 hypothetical protein; 42.1 1.3E+02 0.0029 21.7 7.3 48 41-88 11-58 (77)
345 PF15030 DUF4527: Protein of u 41.9 2.6E+02 0.0055 25.0 12.4 94 25-118 12-105 (277)
346 PRK00846 hypothetical protein; 41.1 1.4E+02 0.003 21.7 8.2 9 42-50 26-34 (77)
347 PF04912 Dynamitin: Dynamitin 41.0 3.3E+02 0.0071 26.0 19.0 20 35-54 208-227 (388)
348 PF13094 CENP-Q: CENP-Q, a CEN 40.9 2E+02 0.0044 23.6 8.8 53 17-69 22-74 (160)
349 PRK10929 putative mechanosensi 40.7 5.5E+02 0.012 28.5 33.1 257 39-309 26-310 (1109)
350 KOG4809 Rab6 GTPase-interactin 40.5 4E+02 0.0086 26.8 28.2 27 98-124 379-405 (654)
351 PF10211 Ax_dynein_light: Axon 40.3 2.3E+02 0.0051 24.1 15.0 8 17-24 68-75 (189)
352 PRK13729 conjugal transfer pil 40.2 1.4E+02 0.0031 29.4 7.9 15 35-49 75-89 (475)
353 PF08172 CASP_C: CASP C termin 39.8 1.4E+02 0.003 26.8 7.4 47 28-74 85-131 (248)
354 PF07716 bZIP_2: Basic region 39.8 95 0.0021 20.4 4.9 17 59-75 34-50 (54)
355 PF10805 DUF2730: Protein of u 39.4 1.7E+02 0.0038 22.3 9.4 23 65-87 66-88 (106)
356 PF05384 DegS: Sensor protein 38.8 2.3E+02 0.005 23.6 20.6 33 87-119 22-54 (159)
357 KOG4571 Activating transcripti 38.1 3.2E+02 0.007 25.1 10.0 39 253-291 248-286 (294)
358 PF13863 DUF4200: Domain of un 38.1 1.9E+02 0.0041 22.4 15.2 25 94-118 76-100 (126)
359 PLN02320 seryl-tRNA synthetase 38.0 3.6E+02 0.0077 27.0 10.5 20 2-21 65-84 (502)
360 PF05103 DivIVA: DivIVA protei 37.9 20 0.00042 28.3 1.5 19 291-309 106-124 (131)
361 TIGR03017 EpsF chain length de 37.9 3.8E+02 0.0082 25.8 23.7 119 20-138 169-296 (444)
362 TIGR03017 EpsF chain length de 37.9 3.8E+02 0.0082 25.8 24.0 20 223-242 344-363 (444)
363 PRK10803 tol-pal system protei 37.7 1.9E+02 0.0042 26.0 8.1 44 60-103 57-100 (263)
364 PRK11415 hypothetical protein; 37.4 1.5E+02 0.0033 21.1 6.5 36 16-51 4-39 (74)
365 PF07889 DUF1664: Protein of u 37.2 2.1E+02 0.0046 22.8 12.7 6 261-266 90-95 (126)
366 KOG1937 Uncharacterized conser 37.1 4.1E+02 0.009 26.0 33.9 16 293-308 496-511 (521)
367 PF08826 DMPK_coil: DMPK coile 36.4 1.4E+02 0.0031 20.5 9.1 9 181-189 16-24 (61)
368 KOG2629 Peroxisomal membrane a 35.9 3.2E+02 0.007 25.1 8.9 71 56-129 121-191 (300)
369 PF13874 Nup54: Nucleoporin co 35.5 2.4E+02 0.0051 22.8 9.0 92 17-108 32-123 (141)
370 PF02183 HALZ: Homeobox associ 35.4 1.2E+02 0.0026 19.4 6.1 34 247-280 6-39 (45)
371 KOG3091 Nuclear pore complex, 35.1 4.6E+02 0.01 26.0 16.4 58 46-103 337-394 (508)
372 PF10805 DUF2730: Protein of u 34.9 2.1E+02 0.0045 21.9 8.7 21 59-79 74-94 (106)
373 PF02050 FliJ: Flagellar FliJ 34.7 1.9E+02 0.0042 21.5 16.3 44 255-298 68-111 (123)
374 PF06721 DUF1204: Protein of u 34.5 2.9E+02 0.0064 23.6 15.6 76 230-310 45-122 (228)
375 PRK13169 DNA replication intia 34.3 2.2E+02 0.0048 22.1 7.4 19 58-76 37-55 (110)
376 KOG4098 Molecular chaperone Pr 34.3 2.5E+02 0.0053 22.6 10.8 41 15-55 15-55 (140)
377 PF09755 DUF2046: Uncharacteri 34.2 3.9E+02 0.0084 24.8 35.0 43 58-100 28-70 (310)
378 KOG4657 Uncharacterized conser 34.1 3.3E+02 0.0072 24.0 19.8 100 165-270 18-117 (246)
379 PF06810 Phage_GP20: Phage min 33.8 2.7E+02 0.0059 22.9 10.1 51 87-138 15-65 (155)
380 PRK10698 phage shock protein P 33.1 3.4E+02 0.0073 23.8 23.2 71 6-79 4-74 (222)
381 TIGR02231 conserved hypothetic 32.9 5.1E+02 0.011 25.8 12.5 36 83-118 136-171 (525)
382 PF06456 Arfaptin: Arfaptin-li 31.9 3.6E+02 0.0078 23.8 25.9 57 120-180 26-82 (229)
383 KOG2196 Nuclear porin [Nuclear 31.7 3.8E+02 0.0082 24.0 18.5 85 38-122 73-157 (254)
384 PF13094 CENP-Q: CENP-Q, a CEN 31.3 2.9E+02 0.0064 22.6 8.8 51 24-74 22-72 (160)
385 COG0497 RecN ATPase involved i 30.9 5.8E+02 0.013 25.9 25.6 37 14-50 142-178 (557)
386 PHA03041 virion core protein; 30.8 2.4E+02 0.0052 23.0 6.5 53 269-321 95-147 (153)
387 PF00769 ERM: Ezrin/radixin/mo 30.5 3.9E+02 0.0085 23.8 17.6 15 274-288 103-117 (246)
388 PF12761 End3: Actin cytoskele 30.5 3.6E+02 0.0077 23.3 10.2 46 93-138 97-142 (195)
389 cd07627 BAR_Vps5p The Bin/Amph 30.4 3.6E+02 0.0078 23.3 26.3 175 127-321 14-198 (216)
390 KOG3990 Uncharacterized conser 30.1 2.7E+02 0.0059 25.0 7.3 15 88-102 277-291 (305)
391 PF03999 MAP65_ASE1: Microtubu 29.8 45 0.00097 34.2 2.9 30 284-313 322-351 (619)
392 PRK14160 heat shock protein Gr 29.7 3.8E+02 0.0083 23.4 9.5 23 302-324 135-157 (211)
393 PF04977 DivIC: Septum formati 29.4 1.7E+02 0.0038 20.4 5.3 34 15-48 17-50 (80)
394 PF15290 Syntaphilin: Golgi-lo 29.3 4.5E+02 0.0097 24.1 13.3 75 16-90 69-143 (305)
395 PF07200 Mod_r: Modifier of ru 29.1 3.1E+02 0.0066 22.1 15.6 62 57-118 27-88 (150)
396 PRK11415 hypothetical protein; 29.0 2.1E+02 0.0046 20.3 5.5 52 53-104 13-65 (74)
397 KOG4005 Transcription factor X 28.9 4.2E+02 0.0091 23.6 8.7 20 92-111 125-144 (292)
398 PF14992 TMCO5: TMCO5 family 28.7 4.6E+02 0.01 24.0 14.6 25 155-179 25-49 (280)
399 PF06810 Phage_GP20: Phage min 28.3 3.4E+02 0.0074 22.4 10.5 25 274-298 58-82 (155)
400 PF00435 Spectrin: Spectrin re 27.7 2.3E+02 0.005 20.2 9.5 29 287-315 75-103 (105)
401 PF14257 DUF4349: Domain of un 27.7 2.5E+02 0.0055 25.0 7.2 26 25-50 128-153 (262)
402 PF06295 DUF1043: Protein of u 27.3 3.2E+02 0.0069 21.7 7.9 53 264-316 29-81 (128)
403 PLN02678 seryl-tRNA synthetase 26.8 6.2E+02 0.013 24.9 10.5 36 83-118 76-111 (448)
404 PRK10361 DNA recombination pro 26.7 6.4E+02 0.014 25.0 23.1 49 139-190 145-193 (475)
405 PRK11020 hypothetical protein; 26.3 3.2E+02 0.0069 21.4 7.1 47 250-296 2-60 (118)
406 PF10482 CtIP_N: Tumour-suppre 26.1 3.2E+02 0.007 21.4 12.4 60 27-86 4-64 (120)
407 PF04949 Transcrip_act: Transc 26.0 3.7E+02 0.0081 22.1 14.4 56 63-118 83-145 (159)
408 TIGR00414 serS seryl-tRNA synt 25.8 6.2E+02 0.013 24.5 10.5 97 120-223 5-106 (418)
409 PF09403 FadA: Adhesion protei 25.2 3.5E+02 0.0077 21.5 14.7 6 286-291 101-106 (126)
410 PRK14127 cell division protein 25.2 2.4E+02 0.0053 21.8 5.6 35 17-51 32-66 (109)
411 KOG2010 Double stranded RNA bi 25.1 5.7E+02 0.012 23.9 9.5 49 45-93 149-197 (405)
412 PF15254 CCDC14: Coiled-coil d 25.1 8.4E+02 0.018 25.8 18.6 64 223-290 496-559 (861)
413 PRK13729 conjugal transfer pil 25.0 3.8E+02 0.0082 26.5 8.1 10 110-119 108-117 (475)
414 KOG0239 Kinesin (KAR3 subfamil 24.7 8.1E+02 0.018 25.5 16.3 142 156-311 169-319 (670)
415 TIGR02977 phageshock_pspA phag 24.6 4.7E+02 0.01 22.7 21.7 14 125-138 24-38 (219)
416 PF04642 DUF601: Protein of un 24.5 5.2E+02 0.011 23.2 9.6 6 5-10 162-167 (311)
417 PRK05431 seryl-tRNA synthetase 24.4 6.6E+02 0.014 24.4 10.2 27 86-112 74-100 (425)
418 PF07851 TMPIT: TMPIT-like pro 24.3 6E+02 0.013 23.9 10.0 78 47-124 1-86 (330)
419 PF05335 DUF745: Protein of un 24.2 4.6E+02 0.0099 22.5 16.8 110 157-273 62-171 (188)
420 KOG0972 Huntingtin interacting 24.1 5.7E+02 0.012 23.6 15.2 127 169-308 223-351 (384)
421 PF03961 DUF342: Protein of un 23.8 6.8E+02 0.015 24.4 10.6 31 20-50 332-362 (451)
422 PF10211 Ax_dynein_light: Axon 23.5 4.6E+02 0.01 22.3 16.0 19 289-307 167-185 (189)
423 PF15450 DUF4631: Domain of un 23.5 7.5E+02 0.016 24.7 37.1 283 10-310 147-473 (531)
424 PF05873 Mt_ATP-synt_D: ATP sy 23.0 1.2E+02 0.0027 25.1 3.9 29 3-31 50-81 (161)
425 KOG2685 Cystoskeletal protein 22.5 7.2E+02 0.016 24.1 14.0 39 80-118 346-384 (421)
426 PF07462 MSP1_C: Merozoite sur 22.3 2.1E+02 0.0045 28.7 5.7 33 294-326 538-570 (574)
427 cd00176 SPEC Spectrin repeats, 22.2 4.4E+02 0.0096 21.5 21.5 31 288-318 182-212 (213)
428 KOG0992 Uncharacterized conser 21.9 8.1E+02 0.018 24.5 34.1 44 275-318 379-422 (613)
429 TIGR03495 phage_LysB phage lys 21.5 4.4E+02 0.0095 21.3 10.1 30 91-120 67-96 (135)
430 PRK00888 ftsB cell division pr 21.4 3.4E+02 0.0073 20.8 5.8 46 44-89 28-73 (105)
431 PRK00409 recombination and DNA 21.3 1E+03 0.022 25.3 13.3 90 223-319 504-593 (782)
432 TIGR00293 prefoldin, archaeal 21.1 4E+02 0.0087 20.6 10.6 32 65-96 87-118 (126)
433 cd00890 Prefoldin Prefoldin is 20.9 3.9E+02 0.0085 20.5 11.9 39 162-200 6-44 (129)
434 KOG0243 Kinesin-like protein [ 20.8 1.1E+03 0.025 25.8 38.1 43 279-321 716-758 (1041)
435 KOG4196 bZIP transcription fac 20.8 4.5E+02 0.0097 21.1 6.2 12 86-97 89-100 (135)
436 PHA03395 p10 fibrous body prot 20.3 3.7E+02 0.008 19.9 6.5 42 163-204 5-46 (87)
437 PF03961 DUF342: Protein of un 20.3 6.5E+02 0.014 24.5 9.0 26 91-116 381-406 (451)
438 COG4467 Regulator of replicati 20.2 4.2E+02 0.0091 20.5 6.6 14 34-47 6-19 (114)
439 PRK11519 tyrosine kinase; Prov 20.1 1E+03 0.022 24.9 17.3 140 25-168 256-397 (719)
440 PF07798 DUF1640: Protein of u 20.0 5.2E+02 0.011 21.6 21.9 39 274-312 120-158 (177)
No 1
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.2e-29 Score=229.96 Aligned_cols=318 Identities=19% Similarity=0.242 Sum_probs=259.6
Q ss_pred cccchhhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 2 LLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 81 (327)
Q Consensus 2 a~INf~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~ 81 (327)
|||||++|||+||++|+++..+.+++.+.+.++.+.+.++..++..+......++++++++...+.+|.+.+......|.
T Consensus 118 avvNfa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~ 197 (446)
T KOG4438|consen 118 AVVNFALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQM 197 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 82 SLRTTLNKLKEKTGA-LDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTT 160 (327)
Q Consensus 82 ~l~~~~~~lk~~~~~-l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~ 160 (327)
.+..++..++..... ..+.++.+.+.+.++.+....|+++||+||++|++.|++|+....+.++.-..+..+...+..+
T Consensus 198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek 277 (446)
T KOG4438|consen 198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK 277 (446)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999988888 6677888888888899888889999999999999999999995555555555555666999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHhhchhhhhhHHHHHHHHHHHhHHHHHH-HHHHHHHHH
Q 020385 161 LEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYK---SLKARLNDDVVLDKSLEAKLIERQGKVEQLD-ELQQQLEKE 236 (327)
Q Consensus 161 ~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~---~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~-~~l~~~~e~ 236 (327)
++.++.++.|+..|.+.+++...+..+.+.....++ .+.+.+.-...+.. .-.-...|..++..+. +.....+..
T Consensus 278 v~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~-~lk~~e~~~kqL~~~~kek~~~~Qd~ 356 (446)
T KOG4438|consen 278 VTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELE-KLKMFENLTKQLNELKKEKESRRQDL 356 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977777766333332 33333322111111 1111234444444433 444444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 237 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITS--KTKFVKESGAAKLQELASKAEEIVEKFQQYTNS 314 (327)
Q Consensus 237 ~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~--~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~ 314 (327)
.++-.+...+.++........+++..+....++.+...++..++. ++...+..++..+.+|..+|..|..||+.|+.+
T Consensus 357 ~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~~y~AE 436 (446)
T KOG4438|consen 357 ENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVELYEAE 436 (446)
T ss_pred HHhhHHHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566777777777777778888888888888888888 999999999999999999999999999999999
Q ss_pred Hhcccc
Q 020385 315 IGTLLP 320 (327)
Q Consensus 315 l~~~~~ 320 (327)
|...|-
T Consensus 437 l~~~m~ 442 (446)
T KOG4438|consen 437 LKRIMI 442 (446)
T ss_pred HHHHHH
Confidence 986654
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.99 E-value=1.5e-05 Score=86.41 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020385 295 QELASKAEEIVEKFQQY 311 (327)
Q Consensus 295 ~~~~~~~~~L~~~~~~Y 311 (327)
..+......|..+++.|
T Consensus 968 ~~l~~~i~~lg~aiee~ 984 (1179)
T TIGR02168 968 EEARRRLKRLENKIKEL 984 (1179)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34444444444444444
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.93 E-value=3.2e-05 Score=83.83 Aligned_cols=8 Identities=0% Similarity=0.135 Sum_probs=3.1
Q ss_pred HhHhcccc
Q 020385 313 NSIGTLLP 320 (327)
Q Consensus 313 ~~l~~~~~ 320 (327)
..|++.|+
T Consensus 975 ~~lg~aie 982 (1179)
T TIGR02168 975 KRLENKIK 982 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=0.00017 Score=79.36 Aligned_cols=228 Identities=10% Similarity=0.149 Sum_probs=112.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHH
Q 020385 56 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE 135 (327)
Q Consensus 56 e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~ 135 (327)
......++..+..|+..+..+......+...+ ..+..|...|..+...+..+..++..+...+..-...+......
T Consensus 849 ~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l----~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL----QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444444444444444444443322 14455555555566666666666666655555544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhH
Q 020385 136 KKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSA-----QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDK 210 (327)
Q Consensus 136 l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~-----~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k 210 (327)
+...+.............+..+...+..+..+..+|..+.. .+..+...+..+.. .+..++.++...+..+.
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~---~ie~le~e~~~l~~~i~ 1001 (1311)
T TIGR00606 925 KEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNA---QLEECEKHQEKINEDMR 1001 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44433333333333334446677777777777777766554 35555555544432 44444444444333333
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 211 SLEAKLIERQGKVEQLDELQQQL---------EKERNLKSEDA-TRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 280 (327)
Q Consensus 211 ~l~~~~~e~~~~~~~l~~~l~~~---------~e~~~~~~~~~-~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le 280 (327)
.+...+..+......+...+..+ ...+..+..+. ......+..+...+..+++........+.+++..++
T Consensus 1002 ~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606 1002 LMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333 22222222110 112244566666666666666666666666667777
Q ss_pred HHHHHHHHhh
Q 020385 281 SKTKFVKESG 290 (327)
Q Consensus 281 ~~i~~~~~~~ 290 (327)
..|..++...
T Consensus 1082 ~qi~~l~~eL 1091 (1311)
T TIGR00606 1082 KEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHH
Confidence 7776666665
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.77 E-value=0.00027 Score=78.25 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020385 176 AQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM 255 (327)
Q Consensus 176 ~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~ 255 (327)
....++...+.+... ++..+..++++.+..+..++..+.+++.++..+.+.++.-...+..+.. ...++..++
T Consensus 1062 ~~~~el~~~l~kke~---El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek----~r~dL~~el 1134 (1930)
T KOG0161|consen 1062 KQKEELDNQLKKKES---ELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAER----QRRDLSEEL 1134 (1930)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 344444444444444 4444555555544444447777777777777777776655554444444 666677777
Q ss_pred HHHHHHHHHH
Q 020385 256 ESKRQDLEAR 265 (327)
Q Consensus 256 ~~~~~el~~~ 265 (327)
+.+..++...
T Consensus 1135 e~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1135 EELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHH
Confidence 7777666664
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.68 E-value=0.00031 Score=65.29 Aligned_cols=109 Identities=22% Similarity=0.325 Sum_probs=83.1
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE-RELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 94 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~-~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~ 94 (327)
.+..|........+++..|..+|..|+.+|..++.... ...+.-.-+..++..+...|.........+..++..+....
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 46788899999999999999999999999999999843 23335566777888888888888888888888888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385 95 GALDEKFSQTEFDLVQSVQQNADLRSKIVQ 124 (327)
Q Consensus 95 ~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~ 124 (327)
..+..+++........+..++..|++.+..
T Consensus 85 ~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 85 EDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 888888888888888888888887755543
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.67 E-value=0.00053 Score=74.59 Aligned_cols=99 Identities=21% Similarity=0.399 Sum_probs=43.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 99 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~ 99 (327)
+..+...+......+......+...+..+...+.........+...+..+...+..+......+..++..+..+...+..
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 751 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333444444444444444444444444444444444444444444
Q ss_pred HHhhhHHHHHHHHHHHHhc
Q 020385 100 KFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 100 ~l~~~~~~i~~~~~e~~~L 118 (327)
.+..+...+..+...+..+
T Consensus 752 ~~~~~~~~~~~~~~~l~~~ 770 (1163)
T COG1196 752 ELEELQERLEELEEELESL 770 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.63 E-value=0.00091 Score=72.79 Aligned_cols=110 Identities=19% Similarity=0.306 Sum_probs=57.0
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 96 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~ 96 (327)
+..+..........+..+...+..+...+.+++.........+..+..++..+...+..+......+...+..+......
T Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 755 (1163)
T COG1196 676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE 755 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555544444555555555555555555555555555555555555555
Q ss_pred HHHHHhhhHHHHHHHHHHHHhchhhhhcCH
Q 020385 97 LDEKFSQTEFDLVQSVQQNADLRSKIVQSP 126 (327)
Q Consensus 97 l~~~l~~~~~~i~~~~~e~~~L~s~iv~sp 126 (327)
+..++..+...+..+......|..++....
T Consensus 756 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 785 (1163)
T COG1196 756 LQERLEELEEELESLEEALAKLKEEIEELE 785 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554444444
No 9
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.63 E-value=0.00012 Score=65.42 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 43 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 43 ~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
.++.........-...+...........+.+..+++....+..++............+|..+.........-...|.++.
T Consensus 8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~ 87 (237)
T PF00261_consen 8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENRE 87 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333333333344444555555556666666666666666666666677777777777777777666666666666
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 123 VQSPEKLQRTLEEKKSIREEARDAEKLA 150 (327)
Q Consensus 123 v~spe~lk~~le~l~~~~~~l~~~e~~~ 150 (327)
..+.+++...=..++.....+...+.++
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~ 115 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKY 115 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554333333333333333343333
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.62 E-value=0.002 Score=71.68 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF----------VKESGAAKLQELASKAEEIVEKFQQYTNSIG 316 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~----------~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~ 316 (327)
.+..+..+++.-+..+...++.+.++..++..+...+.. +....+.++..+...+..=..+...++..|-
T Consensus 1105 ~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr 1184 (1930)
T KOG0161|consen 1105 RIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELR 1184 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444444444555555544444444444443 2333445555555555555555555554443
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=0.00079 Score=70.15 Aligned_cols=245 Identities=20% Similarity=0.248 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH---HHHHHHH
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK---LQRTLEE 135 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~---lk~~le~ 135 (327)
..++....+.+......+......+..++..+.....++...++.+...|.++.... .+.+.+.++ ++..|++
T Consensus 794 ~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~----~k~~~d~~~l~~~~~~ie~ 869 (1293)
T KOG0996|consen 794 ARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAV----LKKVVDKKRLKELEEQIEE 869 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccCcHHHHHHHHHHHHH
Confidence 444444555555555555555555555555556666666666666666666555552 222333333 4556777
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHH
Q 020385 136 KKSIREEARDAEKLAM-QSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEA 214 (327)
Q Consensus 136 l~~~~~~l~~~e~~~~-~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~ 214 (327)
++...+.+. +..+- +....+++.++.+... .+......+..+...+..+.. ++..+...+...++.+..++.
T Consensus 870 l~kE~e~~q--e~~~Kk~~i~~lq~~i~~i~~e--~~q~qk~kv~~~~~~~~~l~~---~i~k~~~~i~~s~~~i~k~q~ 942 (1293)
T KOG0996|consen 870 LKKEVEELQ--EKAAKKARIKELQNKIDEIGGE--KVQAQKDKVEKINEQLDKLEA---DIAKLTVAIKTSDRNIAKAQK 942 (1293)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHhhch--hhHHhHHHHHHHHHHHHHHHH---HHHHhHHHHhcCcccHHHHHH
Confidence 777555443 22221 2336667766666543 233334466666677766666 777777778888888888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhH
Q 020385 215 KLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE---SGA 291 (327)
Q Consensus 215 ~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~---~~e 291 (327)
.+.++...+......+..+.+....... +...++.++.+...-+..+...+..+...+..+...++.++. .++
T Consensus 943 ~l~~le~~~~~~e~e~~~L~e~~~~~~~----k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~ 1018 (1293)
T KOG0996|consen 943 KLSELEREIEDTEKELDDLTEELKGLEE----KAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIE 1018 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 8888888888888888888777776666 666677777777777777777777777777777777777665 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcc
Q 020385 292 AKLQELASKAEEIVEKFQQYTNSIGTL 318 (327)
Q Consensus 292 ~e~~~~~~~~~~L~~~~~~Y~~~l~~~ 318 (327)
..+.++..++..+.+.+..|...+.+.
T Consensus 1019 ~K~e~~~~~l~e~~~~~~~~~k~~~~l 1045 (1293)
T KOG0996|consen 1019 NKLEAINGELNEIESKIKQPEKELKKL 1045 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhhCcc
Confidence 888899999999999999998776654
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=0.0044 Score=68.36 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020385 31 RSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 31 ~~~l~~~~~~l~~~i~~~k~ 50 (327)
...+..........++.+..
T Consensus 711 ~~~~~~~~~~~~~~~e~l~~ 730 (1311)
T TIGR00606 711 LKSTESELKKKEKRRDEMLG 730 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=98.48 E-value=0.0033 Score=66.61 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020385 29 EQRSELEDKISQLNAEI 45 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i 45 (327)
.....+...+..+...+
T Consensus 169 ~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 169 EVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444443333
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.43 E-value=0.0023 Score=62.80 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 86 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 86 ~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
....++.+...|..+.+.....|..+..++..|
T Consensus 200 ~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 200 SSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444433
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.42 E-value=0.0037 Score=64.36 Aligned_cols=171 Identities=12% Similarity=0.117 Sum_probs=101.8
Q ss_pred HHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 98 DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ 177 (327)
Q Consensus 98 ~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~ 177 (327)
..++..+...+..+..++..|++.+..++.........+..-+.....+..+++...-++...-.-+..+..++......
T Consensus 237 d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 237 DTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555667999999999998887765555455555333333344444444455555555555555666666666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020385 178 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMES 257 (327)
Q Consensus 178 l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~ 257 (327)
-.+...-+..++. .+.+.+.+..- |+..+..+..++..-...+..+..-+..+.. ....+..++..
T Consensus 317 ~~d~r~hi~~lke---sl~~ke~~~~~-------Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe----E~~~~~~Ei~~ 382 (775)
T PF10174_consen 317 DSDMRQHIEVLKE---SLRAKEQEAEM-------LQSDVEALRFRLEEKNSQLEKKQAQIEKLQE----EKSRLQGEIED 382 (775)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 6666555655555 55555555555 6666666666666666666655555555555 55556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 258 KRQDLEARQKKVEAVVTEVDAITSK 282 (327)
Q Consensus 258 ~~~el~~~~~~~~~~~~ei~~le~~ 282 (327)
++..++..++++..++..|+.++..
T Consensus 383 l~d~~d~~e~ki~~Lq~kie~Lee~ 407 (775)
T PF10174_consen 383 LRDMLDKKERKINVLQKKIENLEEQ 407 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555555444433
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=98.37 E-value=0.0059 Score=64.69 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITS 281 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~ 281 (327)
.+..+...+.++...+......++.....+..++.
T Consensus 667 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~ 701 (880)
T PRK03918 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333333
No 17
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.36 E-value=0.0017 Score=57.93 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=37.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 291 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e 291 (327)
+..++.++...+..+...+..+......+.. +...+...+..+...+...+...+..-..+..++..|+.+.....
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~----re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEEKASE----REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443444333333333333 445555555555555555555555555556666666655544433
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.32 E-value=0.0062 Score=62.71 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 020385 27 LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF 106 (327)
Q Consensus 27 l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~ 106 (327)
+.+.+.....+...|+..++.++..+......+...++.+..+......+.....-+...++....+...|..+|+++..
T Consensus 327 lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee 406 (775)
T PF10174_consen 327 LKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEE 406 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444333334444444444444444444444333444444444444444444444444
Q ss_pred HHHHHHHHHHhchhhhh
Q 020385 107 DLVQSVQQNADLRSKIV 123 (327)
Q Consensus 107 ~i~~~~~e~~~L~s~iv 123 (327)
.+..=......++.++.
T Consensus 407 ~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 407 QLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44333333333333333
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.31 E-value=0.0045 Score=60.78 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=45.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 22 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 101 (327)
Q Consensus 22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l 101 (327)
.+.+........|...+..|+.+...++......+..+.....++..|......+...-..+..+...++.....+..+|
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445554444444444444444444444455544444444444445555555555555555555
Q ss_pred hhhHHHHHHHHHHH
Q 020385 102 SQTEFDLVQSVQQN 115 (327)
Q Consensus 102 ~~~~~~i~~~~~e~ 115 (327)
..+...+..+.+..
T Consensus 223 ~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 223 RELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444333
No 20
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.30 E-value=0.0025 Score=57.58 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 138 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~ 138 (327)
..++.+.+.++...+..+......+..++..|+.+...+...+..+-..+..+...+.... ....||..+.+.|..+..
T Consensus 43 Rdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~ 121 (294)
T COG1340 43 RDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEK 121 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666666666664444444444444333 445677778888887655
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.27 E-value=0.014 Score=64.42 Aligned_cols=245 Identities=18% Similarity=0.179 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 75 DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSF 154 (327)
Q Consensus 75 ~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~ 154 (327)
.+......++..-..+-..+..|..-++.....|..+..++..|..++..+...+.....-+.........++-+..-..
T Consensus 105 ~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~ 184 (1822)
T KOG4674|consen 105 ALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLE 184 (1822)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444555555566666666666666666666666666665533222222221111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQ----VNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQ 230 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~e----l~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l 230 (327)
++...+.....-+..++......+..+..+ ...++. .+.++...+..-+-.++.|..+..++..+++.+...+
T Consensus 185 QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~---~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~l 261 (1822)
T KOG4674|consen 185 QEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEE---KLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLEL 261 (1822)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222233333333333333222 222222 2222222222222222224445555555555444444
Q ss_pred HHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 020385 231 QQLEKERNLKSED--------------ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQE 296 (327)
Q Consensus 231 ~~~~e~~~~~~~~--------------~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~ 296 (327)
..+.+.......+ |..+..++...+.++...+.....-+++.-..+......+..++.........
T Consensus 262 s~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~ 341 (1822)
T KOG4674|consen 262 SKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEK 341 (1822)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333 33344445555555555566666666666666666777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHhHhcccccc
Q 020385 297 LASKAEEIVEKFQQYTNSIGTLLPVT 322 (327)
Q Consensus 297 ~~~~~~~L~~~~~~Y~~~l~~~~~~~ 322 (327)
...++.+|.+.+..-.+++...++.-
T Consensus 342 ~~k~~~~le~~l~~an~~~~~~~~~~ 367 (1822)
T KOG4674|consen 342 LEKKVSRLEGELEDANDSLSATGESS 367 (1822)
T ss_pred HHHHHHHHHHHHHhhhhhHHhhcccc
Confidence 88999999988888887776654443
No 22
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.26 E-value=0.0012 Score=64.57 Aligned_cols=248 Identities=16% Similarity=0.263 Sum_probs=122.0
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 95 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~ 95 (327)
++++.......+...+..+..++..+...+.+...........+......+.+++.++..++.....+..+...++.+..
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555666666666666655544444444455555555566666666666666666666666666666
Q ss_pred HHHHHHhhh-------------------------HHHHHHHHHHHHhchhhhhcCHH---------HHHHHHHHHHHHHH
Q 020385 96 ALDEKFSQT-------------------------EFDLVQSVQQNADLRSKIVQSPE---------KLQRTLEEKKSIRE 141 (327)
Q Consensus 96 ~l~~~l~~~-------------------------~~~i~~~~~e~~~L~s~iv~spe---------~lk~~le~l~~~~~ 141 (327)
+|...|..+ .|......++|..++.+...+|. +|...|.++...
T Consensus 180 rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaq-- 257 (546)
T KOG0977|consen 180 RLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQ-- 257 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH--
Confidence 655555443 34555555677777777776661 144444444431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHh
Q 020385 142 EARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQG 221 (327)
Q Consensus 142 ~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~ 221 (327)
++.-+ .....-++. -+..+|..............+...+ ++...+..+.+ |..++.+++.
T Consensus 258 ----ye~~~----~~nR~diE~--~Y~~kI~~i~~~~~~~~~~~~~~rE---El~~~R~~i~~-------Lr~klselE~ 317 (546)
T KOG0977|consen 258 ----YEAIS----RQNRKDIES--WYKRKIQEIRTSAERANVEQNYARE---ELRRIRSRISG-------LRAKLSELES 317 (546)
T ss_pred ----HHHHH----HHhHHHHHH--HHHHHHHHHHhhhccccchhHHHHH---HHHHHHhcccc-------hhhhhccccc
Confidence 11111 111111111 1112222222211111122222333 44444444444 4444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 222 KVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 285 (327)
Q Consensus 222 ~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~ 285 (327)
.-.-+...+..+.-....-..-....+.....++..++++|...--+++.+.+---.|..+|.-
T Consensus 318 ~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 318 RNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAA 381 (546)
T ss_pred cChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHH
Confidence 4333333333333322222222233677777788888888888888877777544455555544
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.23 E-value=0.011 Score=61.86 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=21.4
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE 53 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~ 53 (327)
.|..+....+.....+......+..+..+|.+.+..+.
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~ 252 (1074)
T KOG0250|consen 215 SYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLD 252 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444445555555555666666666666666655543
No 24
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.17 E-value=0.021 Score=62.97 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=62.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 99 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~ 99 (327)
+-.+.+.+..+...+...|..-...+..+...+..-...+..+..++..|+++-.-+......|..++..|-.+..++..
T Consensus 701 ~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~ 780 (1822)
T KOG4674|consen 701 TKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQL 780 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444333333333333334443444556666666666666666666666666777666666666666
Q ss_pred HHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH
Q 020385 100 KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 138 (327)
Q Consensus 100 ~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~ 138 (327)
-+.++.+........-...+.+..+-...|...+..++.
T Consensus 781 ~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~ 819 (1822)
T KOG4674|consen 781 LLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKK 819 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555555444444333334444444333
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.10 E-value=0.02 Score=59.90 Aligned_cols=93 Identities=19% Similarity=0.326 Sum_probs=40.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020385 213 EAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAA 292 (327)
Q Consensus 213 ~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~ 292 (327)
..++.+.+.++..|...++.++.-...+.. ++..+...+....++...+...+..++..+.-....|..++..-..
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~----e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~d 468 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLRE----ELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTD 468 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333444444444444444444333333333 4444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020385 293 KLQELASKAEEIVEKFQ 309 (327)
Q Consensus 293 e~~~~~~~~~~L~~~~~ 309 (327)
.+...=.-...|..+|+
T Consensus 469 kvs~FG~~m~~lL~~I~ 485 (1074)
T KOG0250|consen 469 KVSAFGPNMPQLLRAIE 485 (1074)
T ss_pred hhhhcchhhHHHHHHHH
Confidence 44444444444444443
No 26
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.013 Score=57.16 Aligned_cols=65 Identities=12% Similarity=0.274 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
..+.+.+....|+..++.|..-...+...-..+......+..+++.....+..+..+++.|+.+|
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333333334444444444444444444555555554444
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.04 E-value=0.011 Score=54.79 Aligned_cols=245 Identities=20% Similarity=0.258 Sum_probs=145.1
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 95 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~ 95 (327)
....+..+...+...++.+..+...+..++..+......-.+.+....+.+..++..+..+.+.........-.+.....
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 44556666666666777777777777777776666666555666666666666666666666666555555566666666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 96 ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK---------LQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQK 166 (327)
Q Consensus 96 ~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~---------lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~ 166 (327)
.|.++|. |....+.+++..|++++..+|.. |...|.++.. .++..+ ..... +.-..
T Consensus 128 ~L~eEl~---fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~------~ye~~~----~~~~~--e~e~~ 192 (312)
T PF00038_consen 128 SLKEELE---FLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRA------QYEEIA----QKNRE--ELEEW 192 (312)
T ss_dssp HHHHHHH---HHHHHHHHHHHTTSTT----------------HHHHHHHHHH------HHHHHH----HHHHH--HHHHH
T ss_pred HHHHHHH---HHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHH------HHHHHH----hhhhh--hhhhh
Confidence 6665554 55566778888898888422211 3333333222 222222 22222 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020385 167 TLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATR 246 (327)
Q Consensus 167 ~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~ 246 (327)
+...+..+..........+...+. ++..++..++. |..++..+..+...+...+..+......-......
T Consensus 193 y~~k~~~l~~~~~~~~~~~~~~~~---E~~~~r~~~~~-------l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~ 262 (312)
T PF00038_consen 193 YQSKLEELRQQSEKSSEELESAKE---ELKELRRQIQS-------LQAELESLRAKNASLERQLRELEQRLDEEREEYQA 262 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHh---HHHHHHhhhhH-------hhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555 66666666666 66667777777777777777666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 285 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~ 285 (327)
.+..++.++..++.++...-+.+..+.+---.+..+|+.
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIat 301 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIAT 301 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 777777777777777777776666666544455555544
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=98.04 E-value=0.03 Score=59.62 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 020385 36 DKISQLNAEIAAYNE 50 (327)
Q Consensus 36 ~~~~~l~~~i~~~k~ 50 (327)
.++..+...+..+..
T Consensus 197 ~eL~~~~~~i~el~~ 211 (895)
T PRK01156 197 LELENIKKQIADDEK 211 (895)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.03 E-value=0.02 Score=57.55 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 020385 85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAE 147 (327)
Q Consensus 85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e 147 (327)
..+..++.+...+..+...+...+..+..++..+...+..-++.|+..-..+......+..++
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~ 275 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQ 275 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666655443333334333333333333333333
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=0.03 Score=58.85 Aligned_cols=191 Identities=18% Similarity=0.243 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch---hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 80 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR---SKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQE 156 (327)
Q Consensus 80 q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~---s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~ 156 (327)
...+..++..+......+.+.+..+...+..+..+++..+ +-+...|+.....+..+......|....... .+.
T Consensus 386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~---~~~ 462 (1293)
T KOG0996|consen 386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKE---ERE 462 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3333334444444444444444444444444443333332 2234567776666666666433333332222 122
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020385 157 KTTTLEVYQ----KTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ 232 (327)
Q Consensus 157 l~~~~e~~~----~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~ 232 (327)
+.....+|. .+..++....+.|..+...++.... ++.-.+.+|.. |.........++..+...+..
T Consensus 463 l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~---e~~vaesel~~-------L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 463 LDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS---ELDVAESELDI-------LLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 2223333344444444444443333 33333333333 555555555556666555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 233 LEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK 287 (327)
Q Consensus 233 ~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~ 287 (327)
.......... .+..++..+..+..++......+...+.+...+.+....+.
T Consensus 533 ~~~~~~e~~~----~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~r 583 (1293)
T KOG0996|consen 533 SSESLKEKKT----ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLR 583 (1293)
T ss_pred HHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5554444444 44555555555555555555555544444444444433333
No 31
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.97 E-value=0.012 Score=53.00 Aligned_cols=269 Identities=16% Similarity=0.219 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385 33 ELEDKISQLNAEIAAYNEVRERELP----LVQEVDAKVKELRQTIQ----DLNKHQVSLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 33 ~l~~~~~~l~~~i~~~k~~~~~~e~----~~~~l~~~~~eL~~~i~----~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
.|+++|+-|..+|..++....+.++ .+.-+...+.+|...|. .+.+..-.....+..|+++.+.|..+|+.-
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~E 82 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKE 82 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHh
Confidence 3677888888888888887666665 44445555666655444 233333334444555555555555555555
Q ss_pred HHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 020385 105 EFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSA-------Q 177 (327)
Q Consensus 105 ~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~-------~ 177 (327)
+..-..+..+++.. ..+|-.+|.+...-...-..++......+.+.....+.+ .-+|+.+.. +
T Consensus 83 Kq~kerLEtEiES~-------rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkm---n~d~S~lkd~ne~LsQq 152 (305)
T PF14915_consen 83 KQNKERLETEIESY-------RSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKM---NSDVSNLKDNNEILSQQ 152 (305)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHh---cchHHhHHHHhHHHHHH
Confidence 54444444444444 445555666555422222222222211122233332222 224433333 4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHH
Q 020385 178 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDA---TRAFENVKLE 254 (327)
Q Consensus 178 l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~---~~k~~~~~~e 254 (327)
|...+..++.++. ++-...+.|.+....+..++..+...+.++..++.-+.+-+.+...+.... ..++..++++
T Consensus 153 LskaesK~nsLe~---elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsE 229 (305)
T PF14915_consen 153 LSKAESKFNSLEI---ELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSE 229 (305)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 444445556666666666788888888888888777777666666666522 2355556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 020385 255 MESKRQDLEARQKKVEAVVTEVDAITSKTKF----VKESGAAK-------LQELASKAEEIVEKFQQYTNS 314 (327)
Q Consensus 255 ~~~~~~el~~~~~~~~~~~~ei~~le~~i~~----~~~~~e~e-------~~~~~~~~~~L~~~~~~Y~~~ 314 (327)
---++++++....+.+.+-.-|..+...... +....++. -..+..+|.-|...+-.|-.+
T Consensus 230 N~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 230 NMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665555544444444443322 33333332 234677788888887777543
No 32
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.95 E-value=0.025 Score=55.69 Aligned_cols=48 Identities=25% Similarity=0.305 Sum_probs=41.2
Q ss_pred hhhhhchh---hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020385 8 NLRDTKMN---LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE 55 (327)
Q Consensus 8 ~Free~~~---~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~ 55 (327)
-||+.|.. .+..|...+....++++.|.++|..|+.+|..++......
T Consensus 32 ~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ 82 (546)
T KOG0977|consen 32 PIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRE 82 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 45666644 6888999999999999999999999999999999977665
No 33
>PRK11637 AmiB activator; Provisional
Probab=97.84 E-value=0.032 Score=54.21 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 26 RLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 26 ~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
.+..++.++..++..++.++.....
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~ 68 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQ 68 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 34
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.83 E-value=0.023 Score=51.52 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHhchhhhhcCH
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS---QTEFDLVQSVQQNADLRSKIVQSP 126 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~---~~~~~i~~~~~e~~~L~s~iv~sp 126 (327)
++++.....++-.++..|.....-+...+..+-.....+..... .....+..+..++.+|.-.+.++|
T Consensus 57 ~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~ 127 (294)
T COG1340 57 AQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSV 127 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcC
Confidence 33333333334444444444444444444444444444444444 344455667777777766655544
No 35
>PRK01156 chromosome segregation protein; Provisional
Probab=97.79 E-value=0.077 Score=56.51 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.9
Q ss_pred chhhhHHHH
Q 020385 13 KMNLLRPIA 21 (327)
Q Consensus 13 ~~~~~~~l~ 21 (327)
|..+++.+.
T Consensus 151 r~~~ld~~~ 159 (895)
T PRK01156 151 RKKILDEIL 159 (895)
T ss_pred HHHHHHHHh
Confidence 444444443
No 36
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.75 E-value=0.062 Score=54.18 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
.+......+..+...|..+-.....-.............+.+.+..+......+..++++|+
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554555555555555666666666666666666666664
No 37
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.67 E-value=0.084 Score=53.52 Aligned_cols=45 Identities=7% Similarity=0.042 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 140 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ 184 (327)
Q Consensus 140 ~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~e 184 (327)
+.+.....+.+..-...++...+.+.-+.+....+..+..+++.-
T Consensus 220 ~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~s 264 (1265)
T KOG0976|consen 220 LHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQAS 264 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHH
Confidence 333334444444444455555555555555555444444444333
No 38
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=0.14 Score=53.33 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=13.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSE 242 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~ 242 (327)
|..++..+...+......+..++.++.....
T Consensus 848 l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~ 878 (1174)
T KOG0933|consen 848 LKSELGNLEAKVDKVEKDVKKAQAELKDQKA 878 (1174)
T ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433333
No 39
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.50 E-value=0.062 Score=47.60 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 107 DLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVN 186 (327)
Q Consensus 107 ~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~ 186 (327)
.|..+..+.++|.+.+..-|..|+....++......+...+..+ .. .-..+..++.+|......+...+..+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~----e~---le~qv~~~e~ei~~~r~r~~~~e~kl- 82 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIEL----ED---LENQVSQLESEIQEIRERIKRAEEKL- 82 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45577778888888888777777766666555444444444333 22 22334455556666666666665555
Q ss_pred HHhhHHHHHHHHHHhhch
Q 020385 187 SAKSIEKDYKSLKARLND 204 (327)
Q Consensus 187 ~~~~~~~~~~~l~~~l~~ 204 (327)
..-...+.+.+|..+++.
T Consensus 83 ~~v~~~~e~~aL~~E~~~ 100 (239)
T COG1579 83 SAVKDERELRALNIEIQI 100 (239)
T ss_pred hccccHHHHHHHHHHHHH
Confidence 222224445555444444
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.49 E-value=0.14 Score=51.45 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 28 DEQRSELEDKISQLNAEIAAYNEVRE 53 (327)
Q Consensus 28 ~~~~~~l~~~~~~l~~~i~~~k~~~~ 53 (327)
.+.++.+..++..+..++..+.....
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555443
No 41
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.49 E-value=0.15 Score=51.53 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 020385 140 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKAR 201 (327)
Q Consensus 140 ~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~ 201 (327)
...+.......+..+..+..-+.....+++....+...+..+......+.. ++..+...
T Consensus 281 ~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~---Ei~~l~~s 339 (569)
T PRK04778 281 EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE---EIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHc
Confidence 445555555555555555555555666666666666666665555555554 44444433
No 42
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.16 Score=49.94 Aligned_cols=140 Identities=13% Similarity=0.178 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020385 177 QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEME 256 (327)
Q Consensus 177 ~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~ 256 (327)
.+.++..++..... +...+++.++.....+..+...+..+..++..+........+........++..++.+..++.
T Consensus 426 l~~ei~~~~~~~~~---~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~ 502 (581)
T KOG0995|consen 426 LLDEISEELHEAEN---ELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELL 502 (581)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777766666 777777777775555444555555666666666555555555555555555444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhcccccc
Q 020385 257 SKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVT 322 (327)
Q Consensus 257 ~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~~~~ 322 (327)
...--+ ...+...-..++.++-+.+.+..+++.++.++......+...|=..|-.|...|+..
T Consensus 503 ~l~l~~---~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~ 565 (581)
T KOG0995|consen 503 NLKLVL---NTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENL 565 (581)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 223333336677888888888888888888887777777777766666666666544
No 43
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.22 Score=51.70 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK 137 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~ 137 (327)
.+.....+...+...|.+++..-..|..+...++.+.+.+..+...+...+..+.++|+.=...-......++.....+.
T Consensus 259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~ 338 (1200)
T KOG0964|consen 259 ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIE 338 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 55666777777777888888888888888888888888888877777777777777776543332222222333333333
Q ss_pred HHHHHHHHHHHHH
Q 020385 138 SIREEARDAEKLA 150 (327)
Q Consensus 138 ~~~~~l~~~e~~~ 150 (327)
....+++..++++
T Consensus 339 e~~~EL~~I~Pky 351 (1200)
T KOG0964|consen 339 EKKDELSKIEPKY 351 (1200)
T ss_pred HHHHHHHHhhhHH
Confidence 3444444444444
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.37 E-value=0.35 Score=53.22 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 133 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~l 133 (327)
.+......+................+...+..+..........+......+..+...+..|...+...|+.|-..|
T Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL 545 (1201)
T PF12128_consen 470 QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFL 545 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHH
Confidence 4555666666667777777777888888888888888888889999999999999999999999988887755443
No 45
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.35 Score=50.50 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 104 TEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILE 183 (327)
Q Consensus 104 ~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~ 183 (327)
-...+..+..++..++.++..+...+++...+......++..++.......+.+......+..+..++..+...+..+..
T Consensus 785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 33344444444444544444444444444444433333333333333222233333333333344444444444444444
Q ss_pred HHHHHhh
Q 020385 184 QVNSAKS 190 (327)
Q Consensus 184 el~~~~~ 190 (327)
++.+...
T Consensus 865 ~~~~~~~ 871 (1174)
T KOG0933|consen 865 DVKKAQA 871 (1174)
T ss_pred HHHHHHH
Confidence 4433333
No 46
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.18 E-value=0.3 Score=48.71 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHH
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKV 223 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~ 223 (327)
.++...-..+..+..++..+...+..+..++.+.+. ++..++.........+-+|..++......+
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~---el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKE---ELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 344444444455555555555555555555555554 444444444443333333443333333333
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.13 E-value=0.41 Score=49.25 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 139 IREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQS 175 (327)
Q Consensus 139 ~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~ 175 (327)
.+.....+|.++...+.++...-+....++.++..+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666664333
No 48
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.12 E-value=0.35 Score=48.31 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020385 162 EVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL 239 (327)
Q Consensus 162 e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~ 239 (327)
..+..+..+|......|+.+..++..+.. .+..|+.+|..-...+..+..........+..|...+.....++..
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~---~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRA---SVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 33556666666666666666666666665 5566666665544444445555555555555555555555544433
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.04 E-value=0.74 Score=50.71 Aligned_cols=102 Identities=20% Similarity=0.316 Sum_probs=49.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 020385 19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT-GAL 97 (327)
Q Consensus 19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~-~~l 97 (327)
.+..+.+.+...+.........++..+..+......-...+.............+..++.....+..++...+... ..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 683 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI 683 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555554444444444444444444555555555555555555555544433322 344
Q ss_pred HHHHhhhHHHHHHHHHHHHhchh
Q 020385 98 DEKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 98 ~~~l~~~~~~i~~~~~e~~~L~s 120 (327)
...+..+...+..+.+++..+..
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~~~ 706 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEELLE 706 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555433
No 50
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.04 E-value=0.44 Score=48.09 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=5.4
Q ss_pred HhchhhhhcCHHH
Q 020385 116 ADLRSKIVQSPEK 128 (327)
Q Consensus 116 ~~L~s~iv~spe~ 128 (327)
.+|...+..+..+
T Consensus 397 ~kL~~~v~~s~~r 409 (594)
T PF05667_consen 397 AKLQALVEASEQR 409 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.97 E-value=0.24 Score=43.88 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385 254 EMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS 299 (327)
Q Consensus 254 e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~ 299 (327)
++..+...+...+..+..+...+..++..+...+..++.++..+..
T Consensus 111 el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333344444444433333
No 52
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.96 E-value=0.28 Score=44.48 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 020385 65 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 116 (327)
Q Consensus 65 ~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~ 116 (327)
.+-.+..+++.|...=..|...+..=|..+.+|-.+++.....+..+-.+.+
T Consensus 57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d 108 (305)
T PF14915_consen 57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHD 108 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333444444444444445555555555555666666655555555554443
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.95 E-value=0.97 Score=50.49 Aligned_cols=63 Identities=5% Similarity=0.043 Sum_probs=39.3
Q ss_pred chhhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 020385 5 PFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQ 71 (327)
Q Consensus 5 Nf~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~ 71 (327)
-|++-.++|+..+++... ...++......+...+..+..+...+.+..+.+..+..+......
T Consensus 273 d~~r~~eERR~liEEAag----~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 273 DYMRHANERRVHLEEALE----LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHhhCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888887732 335555666666666666666666655555555555555554433
No 54
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.87 E-value=0.62 Score=46.97 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------------HHHHHHHHHHHH
Q 020385 240 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA----------------AKLQELASKAEE 303 (327)
Q Consensus 240 ~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e----------------~e~~~~~~~~~~ 303 (327)
+.......+..+...++...-.+..+.+.+.....-+..+...+.++..... .+++.....-..
T Consensus 445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~ 524 (560)
T PF06160_consen 445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEAED 524 (560)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence 3333344555566666666666666776666666666666666666555443 455555555555
Q ss_pred HHHHHHHHHHhHh---cccccccc
Q 020385 304 IVEKFQQYTNSIG---TLLPVTEI 324 (327)
Q Consensus 304 L~~~~~~Y~~~l~---~~~~~~~~ 324 (327)
+..+-..|...|. .+|+.++.
T Consensus 525 ~F~~~~~Y~~ALe~i~~alE~veP 548 (560)
T PF06160_consen 525 LFRNEYDYEKALETIATALEKVEP 548 (560)
T ss_pred HHHhhCCHHHHHHHHHHHHHHhCC
Confidence 5555445555544 45555544
No 55
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.85 E-value=0.00026 Score=74.25 Aligned_cols=68 Identities=22% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT 283 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i 283 (327)
|...+.+|..+...+...+.....+...+.. .+-.+...++.....+....+....+.+++..+.+..
T Consensus 382 fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~t----e~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~ 449 (859)
T PF01576_consen 382 FDKQLAEWKAKVEELQAERDAAQREARELET----ELFKLKNELEELQEQLEELERENKQLQDELEDLTSQL 449 (859)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 6666667776666666666666666555555 5556666666666666666655555555555444443
No 56
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.84 E-value=0.00027 Score=74.16 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 020385 251 VKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGT 317 (327)
Q Consensus 251 ~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~ 317 (327)
++.++.++...+...+..+...-..+-.++..+..++..|+..+..=..++..++.....=+.+|..
T Consensus 466 LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~ 532 (859)
T PF01576_consen 466 LEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEA 532 (859)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHh
Confidence 3344444444444444444444444445555555555555555555555555554444443334333
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.80 E-value=0.8 Score=47.22 Aligned_cols=103 Identities=12% Similarity=0.194 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020385 174 QSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIE-------RQGKVEQLDELQQQLEKERNLKSEDATR 246 (327)
Q Consensus 174 ~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e-------~~~~~~~l~~~l~~~~e~~~~~~~~~~~ 246 (327)
|.....+++.++.++.. +++..++.+.. ++.+..+ -....+.|-.-|..++++...+...+..
T Consensus 543 ~r~r~~~lE~E~~~lr~---elk~kee~~~~-------~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsa 612 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRR---ELKQKEEQIRE-------LESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSA 612 (697)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44455555555555555 55555555544 3333322 2233444555566666666666553221
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 247 A---FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 286 (327)
Q Consensus 247 k---~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~ 286 (327)
+ --+|=+.+...+.+++..+..+-..-.+|..++.+|..+
T Consensus 613 EtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 613 ETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112333444445555555544444445555555555443
No 58
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.77 Score=46.99 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385 87 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 87 ~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s 120 (327)
...++-+...+..++.+.......+..+.+-|+.
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 59
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.67 E-value=0.96 Score=46.49 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=40.1
Q ss_pred cccchhhhhhhchhhhHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 2 LLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELE--DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 79 (327)
Q Consensus 2 a~INf~~Free~~~~~~~l~~~~e~l~~~~~~l~--~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~ 79 (327)
++.+|+.|==+++..+..-....+.+..-+..+- +-+..|...+..+...... ......+...+.+++..+..+...
T Consensus 146 ~~~~~FfFDGE~I~~la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~ 224 (650)
T TIGR03185 146 ELADLFFFDGEKIEALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEK 224 (650)
T ss_pred hHHHHhcccHHHHHHHhccccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHH
Confidence 3556666766665443321111111222222111 1144455555554333221 222333444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 020385 80 QVSLRTTLNKLKEKTGALDEKFS 102 (327)
Q Consensus 80 q~~l~~~~~~lk~~~~~l~~~l~ 102 (327)
...+..++..+......+..++.
T Consensus 225 ~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 225 YEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333333
No 60
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.67 E-value=0.36 Score=41.58 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=79.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 22 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 101 (327)
Q Consensus 22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l 101 (327)
.++..+...+..+...+..+..+..-++.-....+..+........+|=+-|...++....|...+..++.....+...+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666666666666778888888888888899999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhchhhhh
Q 020385 102 SQTEFDLVQSVQQNADLRSKIV 123 (327)
Q Consensus 102 ~~~~~~i~~~~~e~~~L~s~iv 123 (327)
......+..+...+..|...+.
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888765443
No 61
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.59 E-value=1.1 Score=45.98 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385 248 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 308 (327)
Q Consensus 248 ~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~ 308 (327)
..+.+.++.++.....+++.+++...+.+-.++.--. -.++.-.|+..+......|..|.
T Consensus 374 k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~-dhe~~kneL~~a~ekld~mgthl 433 (1265)
T KOG0976|consen 374 KENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKK-DHEAAKNELQEALEKLDLMGTHL 433 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-hhHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444444444455444444433332222111 11223344555555555555443
No 62
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=1.2 Score=46.58 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS 299 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~ 299 (327)
++..+-.++-++.++++.....+..++.+-..+.+.|.++++....--+.+..
T Consensus 447 r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 447 RMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777777777777777888888777776655444443
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.59 E-value=1.2 Score=46.64 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSE 242 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~ 242 (327)
+...+.++..++..+...+.+...+...+..
T Consensus 479 ~~~et~el~~~iknlnk~L~~r~~elsrl~a 509 (1195)
T KOG4643|consen 479 LEAETEELLNQIKNLNKSLNNRDLELSRLHA 509 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555555555555544
No 64
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=1.5 Score=46.27 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=13.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHhchhhhh
Q 020385 97 LDEKFSQTEFDLVQSVQQNADLRSKIV 123 (327)
Q Consensus 97 l~~~l~~~~~~i~~~~~e~~~L~s~iv 123 (327)
+...+......+..+..++..+.|.|.
T Consensus 702 ~k~~l~~~~~El~~~~~~i~~~~p~i~ 728 (1141)
T KOG0018|consen 702 LKRSLEQNELELQRTESEIDEFGPEIS 728 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 334444444455555555555544444
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.39 E-value=0.42 Score=39.10 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 020385 174 QSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKS 241 (327)
Q Consensus 174 ~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~ 241 (327)
+.+.++-++.++..... .+......|.+ .......+.+++..+......+..++..+.
T Consensus 78 l~rriq~LEeele~ae~---~L~e~~ekl~e-------~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEK---KLKETTEKLRE-------ADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HHhhHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444 44434333444 334444444444444444443333333333
No 66
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.33 E-value=1.5 Score=44.64 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=79.1
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELP-LV-QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 94 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~-~~-~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~ 94 (327)
+..+..+...+..........+..|+..|.+++.......+ .- ..-...-..|...+..|.+....|...+...-...
T Consensus 31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~n 110 (617)
T PF15070_consen 31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENN 110 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777888888877765543221 00 00000111233333334444444444444444444
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 95 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKM 171 (327)
Q Consensus 95 ~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el 171 (327)
..|..-.......|.++...+.++.... |+ ..+.++.|.+.+..++.+-.........+....+.|-.+.++=
T Consensus 111 e~Ls~L~~EqEerL~ELE~~le~~~e~~---~D-~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 111 EQLSRLNQEQEERLAELEEELERLQEQQ---ED-RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4454444455556666666666655433 32 3445666666555555554444444455555555666555543
No 67
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.32 E-value=1.6 Score=44.92 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhchhhhhcCHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTE----------FDLVQSVQQNADLRSKIVQSPE 127 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~----------~~i~~~~~e~~~L~s~iv~spe 127 (327)
.+..+..+...|+..|++|+-.-..+-.+|..|..+.-.|...+..++ ..|..+..+++-|.+++.....
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555566666666555555444332 2233444444444444332211
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHH
Q 020385 128 K-------LQRTLEEKKSIREEARDAEKLA 150 (327)
Q Consensus 128 ~-------lk~~le~l~~~~~~l~~~e~~~ 150 (327)
- |...|+.++..|++-..+++.+
T Consensus 150 Lk~iae~qleEALesl~~EReqk~~LrkEL 179 (717)
T PF09730_consen 150 LKEIAEKQLEEALESLKSEREQKNALRKEL 179 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 3344444555555555555544
No 68
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.28 E-value=1.8 Score=45.06 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=21.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 218 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA 264 (327)
Q Consensus 218 e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~ 264 (327)
+....++.+++--+.+.+-...+.-+++..++.+...+.++....+.
T Consensus 469 etv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~a 515 (1243)
T KOG0971|consen 469 ETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEA 515 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333344444444444444444444444555554444444444444
No 69
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=1.7 Score=44.63 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 020385 213 EAKLIERQGKVEQLDELQQQLEKERNLKS 241 (327)
Q Consensus 213 ~~~~~e~~~~~~~l~~~l~~~~e~~~~~~ 241 (327)
..++..+..++...........+++..+.
T Consensus 854 eq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 854 EQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 33444444444444444444444444444
No 70
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.22 E-value=1.2 Score=42.64 Aligned_cols=61 Identities=13% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 29 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK 89 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~ 89 (327)
.+++++..++..++..|..........+..++.+..++..+...|......-..+...+..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 5666777777777777666666554444444444444444444444433333333333333
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.22 E-value=0.0012 Score=68.28 Aligned_cols=46 Identities=7% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020385 265 RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ 310 (327)
Q Consensus 265 ~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~ 310 (327)
....+......|..++..+...+...+.|.+-|...|.++.-.++.
T Consensus 627 L~~ql~e~~~~i~~lE~~~e~~k~~~~~EekLi~sa~y~~g~~~~~ 672 (713)
T PF05622_consen 627 LKKQLQEKDRRIESLEKELEKSKQMREQEEKLIVSAWYNLGMRLHR 672 (713)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445666667777667777777777777777777666553
No 72
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.9 Score=40.83 Aligned_cols=67 Identities=16% Similarity=0.321 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH
Q 020385 72 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 138 (327)
Q Consensus 72 ~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~ 138 (327)
....+.++...|...+..+-.+..++..++...+..+..+..+|+.|+..|+.-.+.|+.....|..
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444445555555555555556666666666666666666666666655
No 73
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.12 E-value=1 Score=40.79 Aligned_cols=121 Identities=14% Similarity=0.239 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc-CHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ-SPEKLQRTLEEK 136 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~-spe~lk~~le~l 136 (327)
.+..+..++..|..+.......-..+.............|...+..+...|..+......|-..... +|..+.+.+.+.
T Consensus 53 ~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea 132 (264)
T PF06008_consen 53 ELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEA 132 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHH
Confidence 3455555555555555555555556666666666677777777777777777777777777663333 344466666664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 137 KSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKS 190 (327)
Q Consensus 137 ~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~ 190 (327)
...... ++. +. .......++.++..+..++..+...+.+...
T Consensus 133 ~~mL~e---mr~------r~---f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~ 174 (264)
T PF06008_consen 133 QRMLEE---MRK------RD---FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQ 174 (264)
T ss_pred HHHHHH---HHh------cc---chhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 432111 111 11 2222345566666666777766666654444
No 74
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.07 E-value=0.62 Score=37.88 Aligned_cols=100 Identities=19% Similarity=0.340 Sum_probs=60.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD 98 (327)
Q Consensus 19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~ 98 (327)
.+.++........+.+.+.+..|+.+++........-.....-..+.+..|...|..+......+..++..+..++..|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666677777777766666555555555555566666666666666666666666666666666666
Q ss_pred HHHhhhHHHHHHHHHHHHhc
Q 020385 99 EKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 99 ~~l~~~~~~i~~~~~e~~~L 118 (327)
..+......+..+..-+..+
T Consensus 87 k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 87 KELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 66666555555554444333
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.01 E-value=0.69 Score=37.87 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHH
Q 020385 146 AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQ 225 (327)
Q Consensus 146 ~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~ 225 (327)
+..++......+...-+.+...+.+|.++...+..++.++.++.. .+...+..+..... ......-+.++++.
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~---~l~~~k~~lee~~~----~~~~~E~l~rriq~ 84 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE---QLKEAKEKLEESEK----RKSNAEQLNRRIQL 84 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHH----HHHhHHHHHhhHHH
Confidence 333333333444444455566666777777777777777776666 55555444433111 11123345555555
Q ss_pred HHHHHHHHHHHHHHhHH
Q 020385 226 LDELQQQLEKERNLKSE 242 (327)
Q Consensus 226 l~~~l~~~~e~~~~~~~ 242 (327)
+++.+......+.....
T Consensus 85 LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 85 LEEELEEAEKKLKETTE 101 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555544444444
No 76
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.91 E-value=1.8 Score=41.80 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 020385 32 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 111 (327)
Q Consensus 32 ~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~ 111 (327)
.-+..+++.+..+...+-..+. ....+...+..|..+-+.+...-..+..-...+|.+..+....++.+...|...
T Consensus 267 ~~i~~~i~~lk~~n~~l~e~i~----ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~k 342 (622)
T COG5185 267 HIINTDIANLKTQNDNLYEKIQ----EAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELK 342 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3556666666666665555433 344555567777777777777777777778888888888888888888888888
Q ss_pred HHHHHhchhhhhc
Q 020385 112 VQQNADLRSKIVQ 124 (327)
Q Consensus 112 ~~e~~~L~s~iv~ 124 (327)
..++.-|++.+..
T Consensus 343 Eeei~~L~~~~d~ 355 (622)
T COG5185 343 EEEIKALQSNIDE 355 (622)
T ss_pred HHHHHHHHhhHHH
Confidence 8888777766543
No 77
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.78 E-value=3.5 Score=44.29 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 60 QEVDAKVKELRQTIQDLNK-HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 60 ~~l~~~~~eL~~~i~~l~~-~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
.+++..+..++....++++ ....++.++..+...-.....++..+...+..+..+.+.+
T Consensus 468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 468 KELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443 2222333344444444444444444444444444444444
No 78
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.65 E-value=4.9 Score=44.96 Aligned_cols=116 Identities=7% Similarity=0.086 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 020385 164 YQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSED 243 (327)
Q Consensus 164 ~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~ 243 (327)
+..+...+..+...+..+......+.............+.. +...+......+..+..++.....++..+...
T Consensus 846 l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~-------ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~ 918 (1353)
T TIGR02680 846 LEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAAR-------AESDAREAAEDAAEARAEAEEASLRLRTLEES 918 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555544444444444444444555544 44444444444444444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 244 ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 286 (327)
Q Consensus 244 ~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~ 286 (327)
....+.++...+...+..++....++.+....+......+...
T Consensus 919 l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a 961 (1353)
T TIGR02680 919 VGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRA 961 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322444444444444444444444444444444444444433
No 79
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.62 E-value=1.3 Score=38.18 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQ 266 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~ 266 (327)
+...+.+...++..+..++.-.......-.....++...+..++..+..++....
T Consensus 130 ~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 130 LEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445444444444444444444444444444444444444444333
No 80
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.60 E-value=0.46 Score=42.46 Aligned_cols=114 Identities=14% Similarity=0.230 Sum_probs=100.4
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 15 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 94 (327)
Q Consensus 15 ~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~ 94 (327)
.-+.++..+.+.+.-...+-+-.++-|++.+.+-+.+...+...+..+..+++.|-.....+.+....+..++.--....
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 45778888999999999999999999999999999998888889999999999999999999999999999988888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH
Q 020385 95 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK 128 (327)
Q Consensus 95 ~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~ 128 (327)
.-+..+++..+..|..+.+++.++++.+..|...
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999888777655444
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.58 E-value=4.1 Score=43.62 Aligned_cols=29 Identities=10% Similarity=0.160 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 161 LEVYQKTLKKMSKQSAQMQAILEQVNSAK 189 (327)
Q Consensus 161 ~e~~~~~e~el~~~~~~l~~~~~el~~~~ 189 (327)
.+.+..+-.++......|..++.++...+
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE 1611 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAE 1611 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555444433
No 82
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.54 E-value=5.5 Score=44.78 Aligned_cols=107 Identities=14% Similarity=0.242 Sum_probs=66.2
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HH------hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE---VR------ERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTT 86 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~---~~------~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~ 86 (327)
-+..|..+.+.+.+......-++..++.-...... .. ..-+|.+..+.....++...|..+...-...+..
T Consensus 787 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 866 (1486)
T PRK04863 787 RIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQ 866 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665555554444443 11 1235688888899999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhchhhh
Q 020385 87 LNKLKEKTGALDEKFSQTEFDLVQ-SVQQNADLRSKI 122 (327)
Q Consensus 87 ~~~lk~~~~~l~~~l~~~~~~i~~-~~~e~~~L~s~i 122 (327)
+..++.....|..-+-........ +..++..+..++
T Consensus 867 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 903 (1486)
T PRK04863 867 LEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQL 903 (1486)
T ss_pred HHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHH
Confidence 888887777666544443333332 333333333333
No 83
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.48 E-value=3.9 Score=42.66 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhc
Q 020385 295 QELASKAEEIVEKFQQYTNSIGT 317 (327)
Q Consensus 295 ~~~~~~~~~L~~~~~~Y~~~l~~ 317 (327)
.-...+|-.|+.|++.-...+..
T Consensus 524 dqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 524 DQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666666666665555544
No 84
>PRK09039 hypothetical protein; Validated
Probab=95.47 E-value=2.3 Score=40.08 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES 289 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~ 289 (327)
.+..++++++.++.++..++..+++...+....+..|..+...
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554444444444444444333
No 85
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.38 E-value=3.5 Score=41.59 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 020385 140 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKA 200 (327)
Q Consensus 140 ~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~ 200 (327)
...+.......+..+.-+..-+.+...+.+.+..+...+..+......+.. ++..+..
T Consensus 277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~---e~~~v~~ 334 (560)
T PF06160_consen 277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE---ELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 344444444454455555555555555555555555555555555544444 4444433
No 86
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.31 E-value=3.5 Score=41.17 Aligned_cols=54 Identities=6% Similarity=0.099 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 020385 264 ARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGT 317 (327)
Q Consensus 264 ~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~ 317 (327)
...-.+..+-.+|..+...|..++.++..++.+.....+.|...++.|...+..
T Consensus 282 ~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~lee 335 (629)
T KOG0963|consen 282 ALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEE 335 (629)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334466667777777777777777777777777777777777666554
No 87
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.26 E-value=1.7 Score=37.10 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385 63 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 63 ~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
..++.+|+..+..++..-..|......+..+...|..++..+...-..+..+.+.|+
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 444555555555555555555555555555555555555544444444444444443
No 88
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.24 E-value=4 Score=41.43 Aligned_cols=69 Identities=22% Similarity=0.348 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh-hcCH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI-VQSP 126 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i-v~sp 126 (327)
.+..+.....+|+..+..+.........++.....+..-|.++|......+..-..-..+|+.|| .+-|
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p 232 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVP 232 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCC
Confidence 45555556666666666666666566666777777777777788887777777777788888888 4444
No 89
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=95.22 E-value=2.2 Score=38.25 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhccccc
Q 020385 277 DAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPV 321 (327)
Q Consensus 277 ~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~~~ 321 (327)
..+-.+++.++.+...+..+=......++.+++.|+..|-..|.-
T Consensus 200 ~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~L~~ 244 (247)
T PF06705_consen 200 NFVLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQDGLRI 244 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 347778889999999999999999999999999999999877643
No 90
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.20 E-value=4.4 Score=41.68 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=3.7
Q ss_pred HHHHHHHHhH
Q 020385 306 EKFQQYTNSI 315 (327)
Q Consensus 306 ~~~~~Y~~~l 315 (327)
..+..+-..|
T Consensus 509 ~~~~~~f~~l 518 (650)
T TIGR03185 509 EEITKSFKKL 518 (650)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 91
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.10 E-value=0.086 Score=54.76 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020385 264 ARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV 305 (327)
Q Consensus 264 ~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~ 305 (327)
.....+..+..++...+..+.-+++-|.+.+..+...|..|.
T Consensus 603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~ll 644 (722)
T PF05557_consen 603 SQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLL 644 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556677778888888888888888888888777776664
No 92
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=3.9 Score=40.33 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHH
Q 020385 165 QKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQ 231 (327)
Q Consensus 165 ~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~ 231 (327)
.-++.+=-.+.+++..+...--.++....+++++..+..- +..++.+...-..-.+.+++
T Consensus 173 SELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~el-------ln~q~ee~~~Lk~IAekQlE 232 (772)
T KOG0999|consen 173 SELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETEL-------LNSQLEEAIRLKEIAEKQLE 232 (772)
T ss_pred HHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444333333344444466666555444 44444444444444444443
No 93
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.06 E-value=2.1 Score=37.24 Aligned_cols=123 Identities=15% Similarity=0.214 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 020385 166 KTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDAT 245 (327)
Q Consensus 166 ~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~ 245 (327)
.+..+|.++.+...++.....+.+.+ +...+..=+. |...+.++..++......+..+......
T Consensus 80 q~~~dL~s~E~sfsdl~~ryek~K~v---i~~~k~NEE~-------Lkk~~~ey~~~l~~~eqry~aLK~hAee------ 143 (207)
T PF05010_consen 80 QAYADLNSLEKSFSDLHKRYEKQKEV---IEGYKKNEET-------LKKCIEEYEERLKKEEQRYQALKAHAEE------ 143 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34445555555555565555555552 2222221122 4455555555555444444444333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Q 020385 246 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA---AKLQELASKAEEIVEKF 308 (327)
Q Consensus 246 ~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e---~e~~~~~~~~~~L~~~~ 308 (327)
++.....++..++... ...+-++++.+...+..+.++....+ ++...+...|+.|.+.+
T Consensus 144 -kL~~ANeei~~v~~~~---~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 144 -KLEKANEEIAQVRSKH---QAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred -HHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333332222 22333344555555666666655554 56666777777777654
No 94
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.03 E-value=3.6 Score=39.69 Aligned_cols=163 Identities=14% Similarity=0.163 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385 125 SPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND 204 (327)
Q Consensus 125 spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~ 204 (327)
-..+|+..++++-..+-.+.--.... -+-++++.+.+..+.+.|....+--+.++-++.+.+. +.-.|+++...
T Consensus 363 iinkLk~niEeLIedKY~viLEKnd~---~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~---nyv~LQEry~~ 436 (527)
T PF15066_consen 363 IINKLKENIEELIEDKYRVILEKNDI---EKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKA---NYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh---hHHHHHHHHHH
Confidence 34556666666666322222111112 1345556666777777888888877777777777776 77777666422
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 205 DVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFE-NVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT 283 (327)
Q Consensus 205 ~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~-~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i 283 (327)
.+. +-+....+-..+.+-+..+.++...+.. ++.+++ ++.+.++-++.+...++ -+.-.+..+.
T Consensus 437 -eiQ------qKnksvsqclEmdk~LskKeeeverLQ~-lkgelEkat~SALdlLkrEKe~~E-------qefLslqeEf 501 (527)
T PF15066_consen 437 -EIQ------QKNKSVSQCLEMDKTLSKKEEEVERLQQ-LKGELEKATTSALDLLKREKETRE-------QEFLSLQEEF 501 (527)
T ss_pred -HHH------HhhhHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 111 1112222222233334433333333222 111222 12233333333333333 3333445555
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385 284 KFVKESGAAKLQELASKAEEIVEKF 308 (327)
Q Consensus 284 ~~~~~~~e~e~~~~~~~~~~L~~~~ 308 (327)
+......-+|.+++...|..|+++|
T Consensus 502 Qk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 502 QKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 5555666677777888888777765
No 95
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.02 E-value=0.0063 Score=63.08 Aligned_cols=14 Identities=7% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 020385 299 SKAEEIVEKFQQYT 312 (327)
Q Consensus 299 ~~~~~L~~~~~~Y~ 312 (327)
.+..-|+..++.|-
T Consensus 413 kE~d~LR~~L~syd 426 (722)
T PF05557_consen 413 KERDYLRAQLKSYD 426 (722)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHhh
Confidence 33334444444443
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.99 E-value=3.1 Score=38.87 Aligned_cols=52 Identities=8% Similarity=0.165 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385 257 SKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 308 (327)
Q Consensus 257 ~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~ 308 (327)
.+...++....+......+|..++......+.-...|+..+...|..|.+..
T Consensus 241 ~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 241 ELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444445577777777777776543
No 97
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.95 E-value=1.7 Score=35.69 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 020385 261 DLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 309 (327)
Q Consensus 261 el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~ 309 (327)
.+......+.....++..+..-+...+..+..+++.-..+|..|..++.
T Consensus 102 ~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 102 QLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444445677788889999999999999999999999998763
No 98
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.89 E-value=0.0072 Score=62.55 Aligned_cols=24 Identities=8% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 157 KTTTLEVYQKTLKKMSKQSAQMQA 180 (327)
Q Consensus 157 l~~~~e~~~~~e~el~~~~~~l~~ 180 (327)
+....+.+.+++..|..|.+.+++
T Consensus 303 lR~~a~r~~klE~~ve~YKkKLed 326 (713)
T PF05622_consen 303 LREKADRADKLENEVEKYKKKLED 326 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443333
No 99
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.82 E-value=4.1 Score=39.38 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=74.6
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 96 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~ 96 (327)
+..+...++...+++..|...++.|..++..-.- .-..+..+.++...|...+...+-+...|+.....-+-..+.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I----s~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~ 407 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI----STEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQG 407 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHH
Confidence 3344444444444444444444444444433222 123677777788888888888888888888888888888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHhchhhhhcCH
Q 020385 97 LDEKFSQTEFDLVQSVQQNADLRSKIVQSP 126 (327)
Q Consensus 97 l~~~l~~~~~~i~~~~~e~~~L~s~iv~sp 126 (327)
..+.++..-+.+..+.++|..-++.|++.-
T Consensus 408 ~~~slek~~~~~~sl~~~i~~~~~~i~~~~ 437 (622)
T COG5185 408 IFKSLEKTLRQYDSLIQNITRSRSQIGHNV 437 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHhhcC
Confidence 899999999999999999999988887653
No 100
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.80 E-value=5.2 Score=40.48 Aligned_cols=55 Identities=9% Similarity=0.092 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 257 SKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY 311 (327)
Q Consensus 257 ~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y 311 (327)
.=..+++.+-.+.++-.+....-+.+...++.+.+.++..+....+.|...+..-
T Consensus 711 KHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QLk~e 765 (786)
T PF05483_consen 711 KHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNELSSLKKQLKTE 765 (786)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3345566666666666677777777777788888888888888888887776543
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.80 E-value=2.5 Score=36.71 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhh
Q 020385 129 LQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVL 208 (327)
Q Consensus 129 lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~ 208 (327)
|+..+.+|+.. ....++.+.....+.....+-+..+..++..+.+.+......-..+..+...+..+..++.+..|+
T Consensus 32 LKeei~emkk~---e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 32 LKEEIAEMKKK---EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555551 112222333334677777888888888888888888877776666665555566555556553333
No 102
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.79 E-value=3.4 Score=38.32 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385 39 SQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN--------------KHQVSLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 39 ~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~--------------~~q~~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
--|..+++.++.++..---.+++++.....++....++. +.+..|..-+...+.....|..++..+
T Consensus 12 ~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~L 91 (319)
T PF09789_consen 12 LILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEEL 91 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555544444456666666666666665555 345667777777777777777777777
Q ss_pred HHHHHHHHHHHHhchhhhhc
Q 020385 105 EFDLVQSVQQNADLRSKIVQ 124 (327)
Q Consensus 105 ~~~i~~~~~e~~~L~s~iv~ 124 (327)
...+.++..+|.-|+..+..
T Consensus 92 rqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 92 RQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHhchHHHHHHHHHh
Confidence 77777777777777655544
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=5.8 Score=40.79 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=64.0
Q ss_pred HHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 194 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER---NLKSEDATRAFENVKLEMESKRQDLEARQKKVE 270 (327)
Q Consensus 194 ~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~---~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~ 270 (327)
++..++++|.+ ++..+..+.-..+.+..++.+.+... ......+.+.+..-+.-+..++..++.+..+.+
T Consensus 487 ei~qlqarikE-------~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~e 559 (1118)
T KOG1029|consen 487 EIDQLQARIKE-------LQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETE 559 (1118)
T ss_pred HHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555 55555555555555555555554422 222333333444444555666677777888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020385 271 AVVTEVDAITSKTKFVKESGAAKLQELASKAE 302 (327)
Q Consensus 271 ~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~ 302 (327)
.+..+++.....+..+++.+...+-+....|-
T Consensus 560 sk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 560 SKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999888887777766554
No 104
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.58 E-value=7.6 Score=41.35 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=39.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK 282 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~ 282 (327)
......+++.++..+...+..+...+..+.. .+..+...+.++..++...+..+.....+...+..+
T Consensus 400 ~~~~~~elE~r~k~l~~sver~~~~~~~L~~----~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~e 466 (1141)
T KOG0018|consen 400 ELERRAELEARIKQLKESVERLDKRRNKLAA----KITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEE 466 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHH
Confidence 4445566666666666666655555555555 666666666666666666665555544433333333
No 105
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.46 E-value=2.3 Score=36.32 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=2.6
Q ss_pred ccchhhh
Q 020385 3 LFPFLNL 9 (327)
Q Consensus 3 ~INf~~F 9 (327)
+.+|+..
T Consensus 57 ~~~~~~~ 63 (191)
T PF04156_consen 57 LLCLLSK 63 (191)
T ss_pred HHHHHHc
Confidence 3333333
No 106
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.42 E-value=8.7 Score=41.34 Aligned_cols=48 Identities=6% Similarity=0.075 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARL 202 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l 202 (327)
..+.+.-..+....-|+.....++++...-...+..++.......+-|
T Consensus 1525 ~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL 1572 (1758)
T KOG0994|consen 1525 ASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEAL 1572 (1758)
T ss_pred HhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333344444445555555555554444444444333333333333
No 107
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.36 E-value=4.2 Score=37.52 Aligned_cols=111 Identities=12% Similarity=0.244 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020385 158 TTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER 237 (327)
Q Consensus 158 ~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~ 237 (327)
++.+..+..-..-+..+...+++-+.+...++. .-..+.++|-. ...-.....++.+++++.+..+.++.
T Consensus 74 q~kirk~~e~~eglr~i~es~~e~q~e~~qL~~---qnqkL~nqL~~-------~~~vf~k~k~~~q~LE~li~~~~EEn 143 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRESVEERQQESEQLQS---QNQKLKNQLFH-------VREVFMKTKGDIQHLEGLIRHLREEN 143 (401)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHH-------HHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444 33333333433 44445566677777778888777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 238 NLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK 282 (327)
Q Consensus 238 ~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~ 282 (327)
..+.. +++++..+..++.++-....+++.+..+-...+..+
T Consensus 144 ~~lql----qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e 184 (401)
T PF06785_consen 144 QCLQL----QLDALQQECGEKEEESQTLNRELAEALAYQQELNDE 184 (401)
T ss_pred HHHHH----hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777 778888888777777777777777776555555444
No 108
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.26 E-value=3.1 Score=35.53 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 020385 27 LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF 106 (327)
Q Consensus 27 l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~ 106 (327)
+..++..+..+...-+..+.....++.+.+....+-..-...+.+....+......+...+...+.-......+.+..-.
T Consensus 9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar 88 (205)
T KOG1003|consen 9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR 88 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444455566666666777777777777777777777667777777
Q ss_pred HHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 020385 107 DLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDA 146 (327)
Q Consensus 107 ~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~ 146 (327)
.++-+..+.++...+.......+...-++++-....++.+
T Consensus 89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l 128 (205)
T KOG1003|consen 89 KLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSL 128 (205)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 7777777776665555555444444444433333333333
No 109
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.19 E-value=6.3 Score=38.83 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh
Q 020385 291 AAKLQELASKAEEIVEKFQQYTNSIG 316 (327)
Q Consensus 291 e~e~~~~~~~~~~L~~~~~~Y~~~l~ 316 (327)
.+++.+-...-.+|..--..|..++.
T Consensus 515 ~~~v~~~l~eAe~lF~~~~dY~~s~e 540 (570)
T COG4477 515 NAEVAKSLNEAERLFENAFDYDASFE 540 (570)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 35555555555555554455666554
No 110
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.18 E-value=3.5 Score=35.88 Aligned_cols=69 Identities=7% Similarity=0.075 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 222 KVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG 290 (327)
Q Consensus 222 ~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~ 290 (327)
-..+...++....++++.+.........+++..+.-..-.+...++.++.+..+...|..-+++|....
T Consensus 137 LK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 137 LKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445667777777777777777777777777777777777777777777777777777777766543
No 111
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.17 E-value=3.2 Score=35.39 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHH
Q 020385 164 YQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVE 224 (327)
Q Consensus 164 ~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~ 224 (327)
-..++++-..+...++.++.+..+... +...++....+ |......++.++-
T Consensus 90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~---e~~~lk~~~~e-------L~~~~~~Lq~Ql~ 140 (193)
T PF14662_consen 90 ARQLEKEQQSLVAEIETLQEENGKLLA---ERDGLKKRSKE-------LATEKATLQRQLC 140 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---hhhhHHHHHHH-------HHHhhHHHHHHHH
Confidence 345566667777777777777666665 55555444444 4444444444443
No 112
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=7.7 Score=39.74 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=12.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSE 242 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~ 242 (327)
++..+.+....++........++++...+..
T Consensus 585 i~~~~~e~~~ele~~~~k~~rleEE~e~L~~ 615 (698)
T KOG0978|consen 585 IQEQYAELELELEIEKFKRKRLEEELERLKR 615 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.99 E-value=0.95 Score=38.99 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 43 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 43 ~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
..+..++.........+..+...+..|...+..+..........+..++++...|.-+.+.+...+..+..|...|
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444444444444444444444555555555555555555
No 114
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.92 E-value=1.5 Score=31.62 Aligned_cols=70 Identities=24% Similarity=0.328 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 24 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 103 (327)
Q Consensus 24 ~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~ 103 (327)
.+.+..++.+.-+.|.-|+.+|++++. .+..|...+.........|..+...++.+...+.+.|..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKe--------------kn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKE--------------KNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777776666 444555555555556666666666666666666666655
Q ss_pred hHHH
Q 020385 104 TEFD 107 (327)
Q Consensus 104 ~~~~ 107 (327)
+-..
T Consensus 72 LLGk 75 (79)
T PRK15422 72 LLGR 75 (79)
T ss_pred HHHh
Confidence 4433
No 115
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.89 E-value=9 Score=39.57 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=43.9
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 81 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~ 81 (327)
.+.+......+......+..+...|..+|.+++..-...-..+.++..+|-.|+..+..|+..|.
T Consensus 57 ~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv 121 (717)
T PF09730_consen 57 NERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV 121 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444445555555555555666666666666666666667888888899888888888877753
No 116
>PRK09039 hypothetical protein; Validated
Probab=93.85 E-value=5.9 Score=37.34 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhchhhhhcCHHHHHH
Q 020385 105 EFDLVQSVQQNADLRSKIVQSPEKLQR 131 (327)
Q Consensus 105 ~~~i~~~~~e~~~L~s~iv~spe~lk~ 131 (327)
...+.....+++.|.++|...|+-|.-
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~l 71 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSL 71 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777776666665555433
No 117
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.81 E-value=11 Score=40.08 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=16.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
+-.-.++-+.+++..+..+|..|...-+.++..
T Consensus 254 erlmDs~fykdRveelkedN~vLleekeMLeeQ 286 (1195)
T KOG4643|consen 254 ERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQ 286 (1195)
T ss_pred hhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333334445555555655555555555555443
No 118
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.76 E-value=10 Score=39.64 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 25 TRLDEQRSELEDKISQLNAEIAAYN 49 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~~~k 49 (327)
+.....+.++..+.+.+...+..+.
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~ 353 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLK 353 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHH
Confidence 3444555555555555555555443
No 119
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=93.75 E-value=4 Score=35.02 Aligned_cols=103 Identities=22% Similarity=0.271 Sum_probs=55.9
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 020385 14 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLK-- 91 (327)
Q Consensus 14 ~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk-- 91 (327)
...........+.+..++..+...+..+...|+..+..+... ..-..+- .++..+......|..++..+.
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l-------~~l~~l~~~~~~l~~el~~~~~~ 132 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELL-------EELEELKKELKELKKELEKYSEN 132 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 334456667777777777888888888888888876655433 1222222 233333333333333333222
Q ss_pred --HHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385 92 --EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 124 (327)
Q Consensus 92 --~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~ 124 (327)
.....+...+..+...++.-...|.-|.++++.
T Consensus 133 Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 133 DPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 234444445555555555566666666666655
No 120
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.49 E-value=3.3 Score=33.27 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 108 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS 187 (327)
Q Consensus 108 i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~ 187 (327)
+..+..++..+...+......+.....++.........+...+..=..--...+..+..+..++..+...+..+......
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555555553333333333322111444455556666666666666666666555555
Q ss_pred Hhh
Q 020385 188 AKS 190 (327)
Q Consensus 188 ~~~ 190 (327)
...
T Consensus 85 a~~ 87 (132)
T PF07926_consen 85 AKA 87 (132)
T ss_pred HHH
Confidence 544
No 121
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.45 E-value=13 Score=39.92 Aligned_cols=22 Identities=18% Similarity=0.593 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQV 81 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~ 81 (327)
+..+..++..+.. +..++..+.
T Consensus 205 ~~~~~~e~~~~~~-l~e~~~~~~ 226 (908)
T COG0419 205 LEALEEELKELKK-LEEIQEEQE 226 (908)
T ss_pred HHHHHHHHHHHHh-HHHHHHHHh
Confidence 3444444444444 444444443
No 122
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.40 E-value=6.4 Score=36.26 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 020385 129 LQRTLEEKKS 138 (327)
Q Consensus 129 lk~~le~l~~ 138 (327)
|++.+..+..
T Consensus 165 Lq~Klk~LEe 174 (306)
T PF04849_consen 165 LQEKLKSLEE 174 (306)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 123
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.32 E-value=5 Score=34.80 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=5.1
Q ss_pred HHHHHHHHHhchh
Q 020385 108 LVQSVQQNADLRS 120 (327)
Q Consensus 108 i~~~~~e~~~L~s 120 (327)
|..+..++..++.
T Consensus 29 IksLKeei~emkk 41 (201)
T PF13851_consen 29 IKSLKEEIAEMKK 41 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 124
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.23 E-value=7 Score=36.28 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=10.1
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQ 231 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~ 231 (327)
|..++.-+..+...++..+.
T Consensus 214 Lr~QL~~Y~~Kf~efq~tL~ 233 (309)
T PF09728_consen 214 LREQLNLYSEKFEEFQDTLN 233 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544443
No 125
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.16 E-value=11 Score=38.29 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020385 254 EMESKRQDLEARQ------KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 315 (327)
Q Consensus 254 e~~~~~~el~~~~------~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l 315 (327)
+++.++..+...+ ...+.+.......+..+..+....+++|..+...+..+...=..|-..+
T Consensus 406 eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQV 473 (786)
T PF05483_consen 406 ELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQV 473 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444444444 2333333555556666666777777777777777666666555554443
No 126
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=12 Score=38.58 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVT 274 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ 274 (327)
++.++..+.++...+++..+..+...+.
T Consensus 550 qldelskE~esk~~eidi~n~qlkelk~ 577 (1118)
T KOG1029|consen 550 QLDELSKETESKLNEIDIFNNQLKELKE 577 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6666666666666666666655555543
No 127
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.02 E-value=11 Score=38.14 Aligned_cols=98 Identities=27% Similarity=0.282 Sum_probs=48.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD 98 (327)
Q Consensus 19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~ 98 (327)
+-..+.+.+..+++.+...+..+...+..+..........+.+....+.+++..+.-..+....|-. -......|.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d----~e~ni~kL~ 400 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPD----AEENIAKLQ 400 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555555555544433332222221 112234445
Q ss_pred HHHhhhHHHHHHHHHHHHhchh
Q 020385 99 EKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 99 ~~l~~~~~~i~~~~~e~~~L~s 120 (327)
.-+......+.++..+.+..+.
T Consensus 401 ~~v~~s~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 401 ALVEASEQRLVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555544
No 128
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.87 E-value=8.6 Score=36.32 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK 189 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~ 189 (327)
+++.+..+..+..++++.......+......+...
T Consensus 203 ~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd 237 (499)
T COG4372 203 QNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766666555554443
No 129
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.72 E-value=8.4 Score=35.82 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=17.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 53 ERELPLVQEVDAKVKELRQTIQDLNKHQVSL 83 (327)
Q Consensus 53 ~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l 83 (327)
.-.-|.++-.+--+++|...|.+-......+
T Consensus 59 ~~~iP~LElY~~sC~EL~~~I~egr~~~~~~ 89 (312)
T smart00787 59 YCTVPLLELYQFSCKELKKYISEGRDLFKEI 89 (312)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666666666665544443333
No 130
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.67 E-value=12 Score=37.53 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 79 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~ 79 (327)
+......++...+....++..+...+.++...+. .+..++..+..|..++..++..
T Consensus 105 ll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~----~~k~qq~~v~~l~e~l~k~~~~ 160 (629)
T KOG0963|consen 105 LLASAAELLNKQQKASEENEELKEELEEVNNELA----DLKTQQVTVRNLKERLRKLEQL 160 (629)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHh----hhhhhHHHHHhHHHHHHHHHHH
Confidence 3344444444444445555555555555555433 2223333444444444444444
No 131
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.65 E-value=13 Score=37.81 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHH
Q 020385 63 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA-L-DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 130 (327)
Q Consensus 63 ~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~-l-~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk 130 (327)
-+.+..|+.....+-+...+++.+...+|.+... | .+.|......|..+..+-++|..++.+-...++
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIk 477 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIK 477 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444444444444444433322 1 135666777888888888888777666555443
No 132
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.47 E-value=7.3 Score=34.52 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 020385 275 EVDAITSKTKF 285 (327)
Q Consensus 275 ei~~le~~i~~ 285 (327)
++.-+...|+.
T Consensus 89 ey~~Lk~~in~ 99 (230)
T PF10146_consen 89 EYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.40 E-value=4.1 Score=37.93 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 020385 28 DEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 107 (327)
Q Consensus 28 ~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~ 107 (327)
......+..++..++.+...+..++...+.+..++.+++..++.+...+...-...-..++.+.-......++...+...
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555666666666666666666666666666777777777777777777777
Q ss_pred HHHHHHHHHhchhh
Q 020385 108 LVQSVQQNADLRSK 121 (327)
Q Consensus 108 i~~~~~e~~~L~s~ 121 (327)
+..+...+++|+..
T Consensus 122 ~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 122 YEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777777643
No 134
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.39 E-value=17 Score=38.59 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH--HHHHHHHHHH
Q 020385 85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK--LQRTLEEKKS 138 (327)
Q Consensus 85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~--lk~~le~l~~ 138 (327)
.++..+..+..+|.+.+..-+..+..+.++++.|..-+..--++ ++..|+-|..
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~ 236 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEK 236 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666665544333333 6666666655
No 135
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.34 E-value=2.8 Score=29.39 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 020385 24 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQ 71 (327)
Q Consensus 24 ~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~ 71 (327)
.+.+..++.+.-+.|.-|+.+|++++.+......+++..+..+..|..
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 345666777777888888888888887544333344443333333333
No 136
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.33 E-value=23 Score=39.85 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=17.6
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
+.+|...+..+..++..+.+.+..+...+..+...
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555443
No 137
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.31 E-value=9.7 Score=35.57 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchh
Q 020385 32 SELEDKISQLNAEIAAYNEVRERELP 57 (327)
Q Consensus 32 ~~l~~~~~~l~~~i~~~k~~~~~~e~ 57 (327)
++|...|.....-+.++.......-|
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nP 103 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNP 103 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 34444455555555555555444444
No 138
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.30 E-value=15 Score=37.58 Aligned_cols=33 Identities=33% Similarity=0.286 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 020385 210 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 242 (327)
Q Consensus 210 k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~ 242 (327)
+.|..++.+++.++..+...++.+..+...+..
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 346677777777777777777766666655555
No 139
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.16 E-value=14 Score=37.22 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=18.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHH
Q 020385 95 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 129 (327)
Q Consensus 95 ~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~l 129 (327)
..+.+.+++....+..+..++..+.+.+.-+|++|
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L 303 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERL 303 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 44444555555555555555555555555555553
No 140
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.13 E-value=8.7 Score=34.63 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.0
Q ss_pred HHHHHhHHHHH
Q 020385 216 LIERQGKVEQL 226 (327)
Q Consensus 216 ~~e~~~~~~~l 226 (327)
..+++..+..|
T Consensus 178 ~~e~e~~~~~L 188 (265)
T COG3883 178 QNELETQLNSL 188 (265)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 141
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.11 E-value=11 Score=35.69 Aligned_cols=62 Identities=6% Similarity=0.110 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 308 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~ 308 (327)
++....+++....+.+.+.++++..+-...+-++.++..+..-+..-+.--......+.+.+
T Consensus 239 ~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~~a~~rGQv 300 (499)
T COG4372 239 QISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQV 300 (499)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56666666677777777777777776666777777777777777666555555444444433
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.77 E-value=11 Score=35.04 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020385 278 AITSKTKFVKESGAAKLQELASKAEEIVEK 307 (327)
Q Consensus 278 ~le~~i~~~~~~~e~e~~~~~~~~~~L~~~ 307 (327)
..++....-+.-...|+..+...|..|...
T Consensus 257 ~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 257 EAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 333333333333446666666666655543
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.71 E-value=13 Score=35.78 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 020385 67 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV 112 (327)
Q Consensus 67 ~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~ 112 (327)
..|+..|..++.....+...+.........+...|.+..+.+..+.
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444444333
No 144
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.01 E-value=8 Score=33.68 Aligned_cols=75 Identities=8% Similarity=0.144 Sum_probs=38.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 216 LIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG 290 (327)
Q Consensus 216 ~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~ 290 (327)
+..++.++..++.++.+.....+....+.+.++....+.+..+..+......++...+.+++.++.+.+.++...
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444455555555555555555555555555566666666655555443
No 145
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=90.98 E-value=28 Score=38.25 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 253 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 285 (327)
Q Consensus 253 ~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~ 285 (327)
.+..-+..+++........+.++...+++.+..
T Consensus 1041 ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~ 1073 (1294)
T KOG0962|consen 1041 EERVKLEEEREKLSSEKNLLLGEMKQYESQIKK 1073 (1294)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444
No 146
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.71 E-value=7.1 Score=30.89 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKL 294 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~ 294 (327)
.+.+++..+..+.+=+.++. .++..++..|.+++.=|-.-+
T Consensus 76 el~~l~~ry~t~LellGEK~-------E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 76 ELEELQQRYQTLLELLGEKS-------EEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555 444455555555555444333
No 147
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=19 Score=35.72 Aligned_cols=106 Identities=15% Similarity=0.221 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 020385 161 LEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLK 240 (327)
Q Consensus 161 ~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~ 240 (327)
+..+..++.++......+..+..+..+...+..+.+....-++.... .|...+.++..+-.++=..+..+.+++-.+
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~---rlr~elKe~KfRE~RllseYSELEEENIsL 182 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR---RLRDELKEYKFREARLLSEYSELEEENISL 182 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 33456777788888878888877777777655555544322222111 355666667666666666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 241 SEDATRAFENVKLEMESKRQDLEARQKKVE 270 (327)
Q Consensus 241 ~~~~~~k~~~~~~e~~~~~~el~~~~~~~~ 270 (327)
..+-. -+..-+-+++.++.++...+...+
T Consensus 183 QKqVs-~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 183 QKQVS-NLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHH-HHhhhhhhhhHHHHHHHHHHHHHH
Confidence 44211 222334466666666666554433
No 148
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.61 E-value=13 Score=33.62 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 020385 65 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ 113 (327)
Q Consensus 65 ~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~ 113 (327)
...........+...-.....+...+......+...|..+...+..+..
T Consensus 67 k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 67 KATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3333333333333333333344444444444444444444444443333
No 149
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.29 E-value=4.7 Score=29.12 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHH
Q 020385 67 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 133 (327)
Q Consensus 67 ~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~l 133 (327)
..|+++|...-.....|+-++..+|.+...+..+...+...-..+.+++..|+..-..=.++|..-+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677777888888888888888888888888888888888887655554445544443
No 150
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.26 E-value=26 Score=36.69 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385 64 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 64 ~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s 120 (327)
.+++....+|.++...-..+......+-..+..+...+......+..+...+..|..
T Consensus 502 ~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD 558 (769)
T PF05911_consen 502 QELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD 558 (769)
T ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH
Confidence 334444444444444444444555555555666666666666666655555555543
No 151
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=90.17 E-value=11 Score=32.25 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH
Q 020385 72 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK 128 (327)
Q Consensus 72 ~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~ 128 (327)
.+..+|.....+..++.....+......+|..+...-.+...-+.-|..+..+..++
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~ 61 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEK 61 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHH
Confidence 344555555555566666666666666666665555544444444444444444443
No 152
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.58 E-value=13 Score=35.28 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 020385 36 DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN 115 (327)
Q Consensus 36 ~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~ 115 (327)
.....+...|...-.++..-+..++. .+..+.+..+.........+..|..+....++++..|..+...+..+++++
T Consensus 241 ~~L~kl~~~i~~~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 241 SQLDKLQQDISKTLEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443332 333333333333344444444555555555555555666555555555555
Q ss_pred Hhchhhh-hcCHH-HHHHHHHHHHH
Q 020385 116 ADLRSKI-VQSPE-KLQRTLEEKKS 138 (327)
Q Consensus 116 ~~L~s~i-v~spe-~lk~~le~l~~ 138 (327)
+.--+.+ ..+|= ++|..|..|+.
T Consensus 318 eerg~~mtD~sPlv~IKqAl~kLk~ 342 (359)
T PF10498_consen 318 EERGSSMTDGSPLVKIKQALTKLKQ 342 (359)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 5442222 23342 25555544444
No 153
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.38 E-value=11 Score=32.98 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=62.0
Q ss_pred chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE 92 (327)
Q Consensus 13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~ 92 (327)
+.+.|.++..-.+.+.++.+.+..+...|-..++.+.. .+.+++..+..|+.+...++.....+-.++..++.
T Consensus 126 ~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~-------e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 126 RVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEA-------EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 44556666666666666666666666665555555444 46666667777777777777777777777777777
Q ss_pred HHHHHHHHHhhh-HHHHHHHHHHHHhc
Q 020385 93 KTGALDEKFSQT-EFDLVQSVQQNADL 118 (327)
Q Consensus 93 ~~~~l~~~l~~~-~~~i~~~~~e~~~L 118 (327)
+-.+|-..++-. .+.+..+..+--.|
T Consensus 199 r~~ELe~~~El~e~~~i~dl~~et~~l 225 (290)
T COG4026 199 RWDELEPGVELPEEELISDLVKETLNL 225 (290)
T ss_pred HHHHhcccccchHHHHHHHHHHHHhcc
Confidence 777776665443 34455555544444
No 154
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.29 E-value=10 Score=33.03 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=25.6
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
+...+.........++..++.++..+..++..+...
T Consensus 80 V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 80 IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455666667777777777777777777777776643
No 155
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.10 E-value=18 Score=33.30 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQ 266 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~ 266 (327)
.+.+++..+.+...=+.+.+
T Consensus 277 EL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 277 ELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 156
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.72 E-value=11 Score=30.23 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 220 QGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQ 266 (327)
Q Consensus 220 ~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~ 266 (327)
...+..+..........+......|...-..++.++..+...+....
T Consensus 72 ~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 72 QQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444444444
No 157
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=10 Score=29.85 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=52.4
Q ss_pred chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------chhhHHHHHHHHHHHHHHHHHHH
Q 020385 13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER---------------ELPLVQEVDAKVKELRQTIQDLN 77 (327)
Q Consensus 13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~---------------~e~~~~~l~~~~~eL~~~i~~l~ 77 (327)
...-|..+..+...+..++..+...+.+....++++..-... ....+.++......|+.+|..|.
T Consensus 11 ~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLe 90 (119)
T COG1382 11 QLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLE 90 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666665542111 11244566667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020385 78 KHQVSLRTTLNKLKEKTGALD 98 (327)
Q Consensus 78 ~~q~~l~~~~~~lk~~~~~l~ 98 (327)
+....+..++..++.....+.
T Consensus 91 kQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 91 KQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777766666655443
No 158
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.09 E-value=27 Score=33.94 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 020385 41 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK---HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 117 (327)
Q Consensus 41 l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~---~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~ 117 (327)
|..-|..++......+..+..|+-.+--|+..+.+|.- +|..+..=++.||....+|.+.-...-..-..+..-..+
T Consensus 315 LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqn 394 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQN 394 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHH
Confidence 45555555555555556666666666666666666554 377777778888888888877666555555555544444
Q ss_pred ch
Q 020385 118 LR 119 (327)
Q Consensus 118 L~ 119 (327)
|.
T Consensus 395 Lq 396 (527)
T PF15066_consen 395 LQ 396 (527)
T ss_pred HH
Confidence 43
No 159
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.07 E-value=42 Score=36.12 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 31 RSELEDKISQLNAEIAAYNEVRER---------ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 101 (327)
Q Consensus 31 ~~~l~~~~~~l~~~i~~~k~~~~~---------~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l 101 (327)
+..+..+|..|...+...+.+.+- ++.+++.....+.++..++..+......++..+...-.-+..+..++
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666777777777776664432 33345556666666666666666666666666663333333444444
Q ss_pred hhhHHHHHHHHHHHHhchhhhhcCH
Q 020385 102 SQTEFDLVQSVQQNADLRSKIVQSP 126 (327)
Q Consensus 102 ~~~~~~i~~~~~e~~~L~s~iv~sp 126 (327)
..++..|.....++..+...+.+..
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~ 510 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAK 510 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333
No 160
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.94 E-value=16 Score=34.07 Aligned_cols=16 Identities=0% Similarity=0.121 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 020385 292 AKLQELASKAEEIVEK 307 (327)
Q Consensus 292 ~e~~~~~~~~~~L~~~ 307 (327)
.||+++-..-..|-+.
T Consensus 169 ~EINAA~Gq~~LLL~~ 184 (314)
T PF04111_consen 169 NEINAAWGQTALLLQT 184 (314)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 161
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.93 E-value=12 Score=29.57 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385 156 EKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSL 198 (327)
Q Consensus 156 ~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l 198 (327)
+.+..+..|+.+...++.+....+.++.++.-.+.+..++..+
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l 49 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455566666677777777777777777766666655555544
No 162
>PRK10869 recombination and repair protein; Provisional
Probab=87.63 E-value=34 Score=34.56 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 26 RLDEQRSELEDKISQLNAEIAAYN 49 (327)
Q Consensus 26 ~l~~~~~~l~~~~~~l~~~i~~~k 49 (327)
.+...+..++.....+..++..+.
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~ 177 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQ 177 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 163
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.59 E-value=36 Score=34.82 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385 65 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 65 ~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
...++.+++..+.++-..+..+.+.++.+...|.+++...
T Consensus 403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~ 442 (961)
T KOG4673|consen 403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA 442 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777777777777777766654
No 164
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.56 E-value=32 Score=34.29 Aligned_cols=70 Identities=10% Similarity=0.267 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 020385 248 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT-----------KFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 316 (327)
Q Consensus 248 ~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i-----------~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~ 316 (327)
+..+..+...+++++...+.++.....++...+... ..+...+...+.. +.++..+...+..|-+++.
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-EAELRLYYQELYHYREELS 354 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333333333333 3333333333333 4555555556666666655
Q ss_pred cc
Q 020385 317 TL 318 (327)
Q Consensus 317 ~~ 318 (327)
..
T Consensus 355 ~~ 356 (511)
T PF09787_consen 355 RQ 356 (511)
T ss_pred Hh
Confidence 43
No 165
>PRK11281 hypothetical protein; Provisional
Probab=87.20 E-value=51 Score=36.19 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385 69 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 124 (327)
Q Consensus 69 L~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~ 124 (327)
|++.+..........+..+..+......+....+.+...+.+....+..++.++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444444555555555555555555555555555555555555555555554444
No 166
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.00 E-value=15 Score=29.98 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=3.2
Q ss_pred HHHHHhch
Q 020385 112 VQQNADLR 119 (327)
Q Consensus 112 ~~e~~~L~ 119 (327)
..++++|+
T Consensus 139 e~E~~kLk 146 (151)
T PF11559_consen 139 EREIEKLK 146 (151)
T ss_pred HHHHHHHH
Confidence 33444443
No 167
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.71 E-value=9.5 Score=27.26 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 27 LDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 27 l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+..++..+-+.|..|+.++.+++.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 168
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.68 E-value=23 Score=34.85 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=60.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 22 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 101 (327)
Q Consensus 22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l 101 (327)
.+.-.+.+.+..+.++++....++..+-..+......+..+.-+++++...|..+..-+..++.++..+.++..+....+
T Consensus 212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQML 291 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555666666666666666666677777778888888888888888888888888888877777766
Q ss_pred hhhHHHHHH
Q 020385 102 SQTEFDLVQ 110 (327)
Q Consensus 102 ~~~~~~i~~ 110 (327)
......|..
T Consensus 292 ~EaeeELk~ 300 (596)
T KOG4360|consen 292 HEAEEELKC 300 (596)
T ss_pred HHHHHHHHh
Confidence 655544443
No 169
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.60 E-value=24 Score=31.83 Aligned_cols=55 Identities=9% Similarity=0.069 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 020385 146 AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLN 203 (327)
Q Consensus 146 ~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~ 203 (327)
+++.-.....+++..--.+.-++..+..|.++++.+..++.+++. ++...+....
T Consensus 79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~Ks---ELErsQ~~~~ 133 (307)
T PF10481_consen 79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKS---ELERSQQAAS 133 (307)
T ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhc
Confidence 333333334778888888888999999999999999999999988 7777655544
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.14 E-value=11 Score=31.42 Aligned_cols=79 Identities=29% Similarity=0.385 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHhchhhhh-cCHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT--GALDEKFSQTEFDLVQSVQQNADLRSKIV-QSPEKLQRTLE 134 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~--~~l~~~l~~~~~~i~~~~~e~~~L~s~iv-~spe~lk~~le 134 (327)
.+..+..++.+|..++..+......+..++..+...- .+|...+..+...+..+...+..|++-.. -||+.+.....
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~ 152 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEK 152 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 5667777777777777777777777777777776654 56677777777777777777777765332 35555554444
Q ss_pred HH
Q 020385 135 EK 136 (327)
Q Consensus 135 ~l 136 (327)
..
T Consensus 153 ~~ 154 (169)
T PF07106_consen 153 EY 154 (169)
T ss_pred HH
Confidence 43
No 171
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.83 E-value=25 Score=31.38 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHH
Q 020385 70 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE 135 (327)
Q Consensus 70 ~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~ 135 (327)
...|.+|......|.+.....+.+..-+.-.++.......+....|..|+++...+.-.+.+.+-+
T Consensus 107 ~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD 172 (330)
T KOG2991|consen 107 SDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD 172 (330)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC
Confidence 356667778888888888888888889999999999999999999999988877666666655443
No 172
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.80 E-value=11 Score=26.99 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=33.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVD 277 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~ 277 (327)
|+.++..+-..+..++..+..+.++...+.. ....+..+...++++.+....++..+.+.++
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~----e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKE----ENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444444444455555555555555444444 4555556666666666666666665555443
No 173
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.79 E-value=55 Score=35.18 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=11.9
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAA 47 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~ 47 (327)
+.+...+.......+......+..+...+..
T Consensus 279 ~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~ 309 (908)
T COG0419 279 LERLLEELEEKIERLEELEREIEELEEELEG 309 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 174
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.97 E-value=21 Score=31.20 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhh
Q 020385 62 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 123 (327)
Q Consensus 62 l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv 123 (327)
+..++..+...+..+...-+....+++....+...+..+.+........+.++..+|+++|.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44566666666666777777777777777777777777777777777777777777777664
No 175
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.70 E-value=23 Score=29.84 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 129 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~l 129 (327)
.|.+++-+|..|...|. .-..++..++.....-..-++.....+..+..++..++..+..-.+.+
T Consensus 43 DFeqLkien~~l~~kIe-------ERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~ 107 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIE-------ERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEEL 107 (177)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333 333445555555555555555555555555555555554444444333
No 176
>PLN02939 transferase, transferring glycosyl groups
Probab=84.70 E-value=62 Score=34.85 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----------------HHHHHhchhhh
Q 020385 60 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS-----------------VQQNADLRSKI 122 (327)
Q Consensus 60 ~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~-----------------~~e~~~L~s~i 122 (327)
..+-.=+...+..|.-+|.-....-+++...-.++..|..++.-+.-.+.+. ....++|+.-+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (977)
T PLN02939 131 EDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNEL 210 (977)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhh
Confidence 3333344444444445555444444555555555666666555555555442 22333333222
Q ss_pred hcCHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 123 VQSPEK-------LQRTLEEKKS----IREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKS 190 (327)
Q Consensus 123 v~spe~-------lk~~le~l~~----~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~ 190 (327)
.+-... |-..+..++. .+..+..+.... .+...+-+.+..++++-+.+..-+.+++..+.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (977)
T PLN02939 211 LIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAEL----IEVAETEERVFKLEKERSLLDASLRELESKFIVAQE 285 (977)
T ss_pred hccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 211110 3344444444 344455555555 666667777777777777777777777766655544
No 177
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.37 E-value=12 Score=26.32 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 161 LEVYQKTLKKMSKQSAQMQAILEQVNSAK 189 (327)
Q Consensus 161 ~e~~~~~e~el~~~~~~l~~~~~el~~~~ 189 (327)
.++|.+++.+|......+.-++-++..++
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELK 31 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444443333
No 178
>PRK09343 prefoldin subunit beta; Provisional
Probab=83.45 E-value=20 Score=28.28 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385 154 FQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK 199 (327)
Q Consensus 154 ~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~ 199 (327)
...++..+..|..+..++..+....+.+..++..++.+.+++..+.
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~ 51 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLP 51 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3667778888899999999999999999999988888777887763
No 179
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.40 E-value=78 Score=35.01 Aligned_cols=9 Identities=11% Similarity=0.560 Sum_probs=3.4
Q ss_pred HHHHHHhHh
Q 020385 308 FQQYTNSIG 316 (327)
Q Consensus 308 ~~~Y~~~l~ 316 (327)
+..|..-+.
T Consensus 1107 L~ky~~aLD 1115 (1294)
T KOG0962|consen 1107 LDKYYKALD 1115 (1294)
T ss_pred HHHHHHHHH
Confidence 333433333
No 180
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.99 E-value=43 Score=33.78 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 264 ARQKKVEAVVTEVDAITSKTKFVK 287 (327)
Q Consensus 264 ~~~~~~~~~~~ei~~le~~i~~~~ 287 (327)
.+++++.+....++.|+.+...++
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444433
No 181
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.94 E-value=45 Score=31.84 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 27 LDEQRSELEDKISQLNAEIAAYNEVR 52 (327)
Q Consensus 27 l~~~~~~l~~~~~~l~~~i~~~k~~~ 52 (327)
+..+...+..++..+.+.+..+...+
T Consensus 79 ~~~~l~~l~~~~~~l~a~~~~l~~~~ 104 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEVARLRAEA 104 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777776665543
No 182
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=82.93 E-value=40 Score=31.36 Aligned_cols=92 Identities=16% Similarity=0.327 Sum_probs=48.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Q 020385 218 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTE-------VDAITSKTKFVKESG 290 (327)
Q Consensus 218 e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~e-------i~~le~~i~~~~~~~ 290 (327)
.+..+++.+..+...++..+..+.+ ...++..+.+..+......+.++.-+.+- |+.+-.+-.-++
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lD----EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~--- 202 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLD----EKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLK--- 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH---
Confidence 3333334444444444444444444 44444444455555555555554444411 223322222232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 020385 291 AAKLQELASKAEEIVEKFQQYTNSIGT 317 (327)
Q Consensus 291 e~e~~~~~~~~~~L~~~~~~Y~~~l~~ 317 (327)
..+..++.+-..+...|.+|-..+..
T Consensus 203 -erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 203 -ERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888899999999999998873
No 183
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.34 E-value=29 Score=29.23 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 194 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV 273 (327)
Q Consensus 194 ~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~ 273 (327)
+...+...|++++.++..|.........-+.+..+.+.....+...+.. .+......+..++.++......++...
T Consensus 50 en~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~----~l~~~~~~~~~~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 50 ENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQ----ELKDREEELAKLREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554445555555555555555555555555555555 455555555555555555554444444
Q ss_pred HHHHHHHHH
Q 020385 274 TEVDAITSK 282 (327)
Q Consensus 274 ~ei~~le~~ 282 (327)
.....+...
T Consensus 126 ~~~~~l~~~ 134 (177)
T PF13870_consen 126 KQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHh
Confidence 444444433
No 184
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=82.12 E-value=56 Score=32.41 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=66.9
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 96 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~ 96 (327)
..-+..+++.+..++............+-..+...+...+.....+..++....+.+..++ ..|...-..|+.....
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq---DEL~TTr~NYE~QLs~ 491 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ---DELETTRRNYEEQLSM 491 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHH
Confidence 4445566666666666666666666666666666655555555555555555555444443 3455556667888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHhch
Q 020385 97 LDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 97 l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
|.+.|..++..+..-..+|+.|+
T Consensus 492 MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 492 MSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888886
No 185
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=82.07 E-value=21 Score=27.54 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385 157 KTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSL 198 (327)
Q Consensus 157 l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l 198 (327)
+...+..|+.+..++..+...+..+..++..+..+.+++..+
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455667788888888888888888888888888877777766
No 186
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.97 E-value=23 Score=27.96 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 020385 256 ESKRQDLEARQ 266 (327)
Q Consensus 256 ~~~~~el~~~~ 266 (327)
.++.++.++.+
T Consensus 92 GEK~E~veEL~ 102 (120)
T PF12325_consen 92 GEKSEEVEELR 102 (120)
T ss_pred cchHHHHHHHH
Confidence 33333333333
No 187
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.30 E-value=58 Score=31.39 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=51.4
Q ss_pred HHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHH-------------------HHHHHHHHHHH-HHHHHhHH
Q 020385 183 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKV-------------------EQLDELQQQLE-KERNLKSE 242 (327)
Q Consensus 183 ~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~-------------------~~l~~~l~~~~-e~~~~~~~ 242 (327)
.-++....+..++.++...+++.++++.+++..+..+..-. +.+..++.... +.....+.
T Consensus 276 ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd 355 (446)
T KOG4438|consen 276 EKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQD 355 (446)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555666666666666655443333333222111 11112222222 34444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 243 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE 288 (327)
Q Consensus 243 ~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~ 288 (327)
-.+++..++.+..+.....++.+..+++++...+......|...+-
T Consensus 356 ~~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~~e~ 401 (446)
T KOG4438|consen 356 LENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKKIEL 401 (446)
T ss_pred HHHhhHHHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHHHHh
Confidence 4444555555555566666666666666666555555555555444
No 188
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.25 E-value=24 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020385 29 EQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+.+-.+..+...+..+++.++.
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~ 50 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRA 50 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 189
>PRK11281 hypothetical protein; Provisional
Probab=79.78 E-value=1e+02 Score=33.95 Aligned_cols=41 Identities=7% Similarity=0.133 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH
Q 020385 88 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK 128 (327)
Q Consensus 88 ~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~ 128 (327)
....+..+.....+++.+..+..+...-++-++.+...+.+
T Consensus 131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~R 171 (1113)
T PRK11281 131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQR 171 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 33333333333334444444444444333333333333333
No 190
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.72 E-value=84 Score=32.93 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 24 LTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 24 ~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
.+-+..++..+..+....+.++..++.+
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555544
No 191
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=79.66 E-value=52 Score=30.47 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 129 LQRTLEEKKSIREEARDAEKLAMQSFQEKTT----TLEVYQKTLKKMSKQSAQMQAILEQVNSA 188 (327)
Q Consensus 129 lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~----~~e~~~~~e~el~~~~~~l~~~~~el~~~ 188 (327)
.+..+++|...-..++.--..++.+|.++++ +-+.|..+..++....+.+-.++.+.-..
T Consensus 206 ak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~w 269 (391)
T KOG1850|consen 206 AKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIW 269 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777333333333344555555544 44667777777776666666555554433
No 192
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.58 E-value=88 Score=33.06 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 152 QSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 182 (327)
Q Consensus 152 ~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~ 182 (327)
..+.+-...+..|..+.+.+.....-+.++.
T Consensus 435 ~l~~~h~~lL~K~~di~kQle~~~~s~~~~~ 465 (980)
T KOG0980|consen 435 ELRQEHADLLRKYDDIQKQLESAEQSIDDVE 465 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333444444444444444444444444333
No 193
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.03 E-value=40 Score=28.76 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020385 263 EARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEK 307 (327)
Q Consensus 263 ~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~ 307 (327)
..-...+=.++.++..+.+....++...+..+..+..+|.+....
T Consensus 137 ~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~~r~ 181 (182)
T PF15035_consen 137 SSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFARTSRS 181 (182)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 334444556668888999999999999999999999888876543
No 194
>PF13514 AAA_27: AAA domain
Probab=78.90 E-value=1.1e+02 Score=33.77 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=49.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Q 020385 18 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH--------------QVSL 83 (327)
Q Consensus 18 ~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~--------------q~~l 83 (327)
..+....................+...+..+......-+..+...+..+..........-.. .-..
T Consensus 655 ~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~ 734 (1111)
T PF13514_consen 655 AALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALEL 734 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444333311000 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385 84 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 124 (327)
Q Consensus 84 ~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~ 124 (327)
-..+.........+...+..+...+......+..|-..+..
T Consensus 735 l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 735 LEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 12344444555566666666666666666666666555444
No 195
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.84 E-value=77 Score=32.00 Aligned_cols=56 Identities=13% Similarity=0.101 Sum_probs=31.0
Q ss_pred chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 020385 13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69 (327)
Q Consensus 13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL 69 (327)
++..++.+.. ...+...+..++.+...+...+..+..........+..++-.+.+|
T Consensus 146 ~~~lLD~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 146 QRQLLDTFAG-ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4555666555 4556666666666666666666666655443333444433333333
No 196
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=78.79 E-value=28 Score=26.90 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385 154 FQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSL 198 (327)
Q Consensus 154 ~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l 198 (327)
++.+....+.|+.+++++..+....+.++.++...+-+..++.-+
T Consensus 4 ~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldll 48 (120)
T KOG3478|consen 4 QKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLL 48 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 356777788899999999999999999999998888766666544
No 197
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=78.45 E-value=38 Score=28.19 Aligned_cols=120 Identities=16% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 14 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQ----EVDAKVKELRQTIQDLNKHQVSLRTTLNK 89 (327)
Q Consensus 14 ~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~----~l~~~~~eL~~~i~~l~~~q~~l~~~~~~ 89 (327)
+..++.+.............+..++..|..+...-+..+...+..+. ....+..+|...+..+......|...+..
T Consensus 35 LE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 35 LELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHH
Q 020385 90 LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 133 (327)
Q Consensus 90 lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~l 133 (327)
+......+...-.++......+...-..+-...+.-.++.+..|
T Consensus 115 ~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 115 LSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI 158 (158)
T ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 198
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.14 E-value=70 Score=32.34 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 280 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le 280 (327)
++.+...++..+...+......++.+..+...+.
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 199
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=78.12 E-value=76 Score=31.52 Aligned_cols=96 Identities=11% Similarity=0.216 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020385 168 LKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRA 247 (327)
Q Consensus 168 e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k 247 (327)
...|..+...++........... +...+..+|.. .+...+.+...+.........+.+++...
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~---Ec~aL~~rL~~--------------aE~ek~~l~eeL~~a~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYA---ECRALQKRLES--------------AEKEKESLEEELKEANQNISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444444 44444444433 33344444444444445555555555445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 248 FENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 280 (327)
Q Consensus 248 ~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le 280 (327)
..+.+..+..+.+.+...+.++..-.++|+.++
T Consensus 482 r~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 482 RRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666666666666666666666554
No 200
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.70 E-value=91 Score=32.22 Aligned_cols=64 Identities=14% Similarity=0.313 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGT 317 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~ 317 (327)
+.+.+.++.++++..+...+...+.....+..+..+++.+. ......-..++.|+..|-+..-.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~-------~~~~~~~~~mrd~~~~~~e~~~~ 280 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR-------RSSLEKEQELRDHLRTYAERRRE 280 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHhhhhhhcchhhhhHHHHHh
Confidence 44555566666666666666555555566666666666666 13444455667777777655443
No 201
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.60 E-value=29 Score=26.47 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=13.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
.....-.+-.+++.+..+.+.+.++-+.+-..
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444444444444444444444444433
No 202
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.42 E-value=78 Score=31.25 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 020385 170 KMSKQSAQMQAILEQ 184 (327)
Q Consensus 170 el~~~~~~l~~~~~e 184 (327)
.|..+...+..+...
T Consensus 276 ~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 276 DVIATKREIAQLEEQ 290 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444433
No 203
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=77.40 E-value=93 Score=32.18 Aligned_cols=102 Identities=11% Similarity=0.069 Sum_probs=51.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 020385 214 AKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF-------- 285 (327)
Q Consensus 214 ~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~-------- 285 (327)
.-..+.+.+..++-.++.....++-.++. ......+.+..++.++...+..+.-+...++.....|..
T Consensus 461 sA~ed~Qeqn~kL~~el~ekdd~nfklm~----e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~l 536 (698)
T KOG0978|consen 461 SAFEDMQEQNQKLLQELREKDDKNFKLMS----ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGL 536 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666665555555555 344444444444444444443333333222222222222
Q ss_pred ----------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 020385 286 ----------------VKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 319 (327)
Q Consensus 286 ----------------~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~ 319 (327)
..+.+.+.+..+...+..|..+.+.++..|...-
T Consensus 537 t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~ 586 (698)
T KOG0978|consen 537 TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQ 586 (698)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333345566666666677777777776665443
No 204
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.87 E-value=49 Score=28.65 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHhh
Q 020385 89 KLKEKTGALDEKFSQ 103 (327)
Q Consensus 89 ~lk~~~~~l~~~l~~ 103 (327)
-||....+...+++.
T Consensus 14 LLKqQLke~q~E~~~ 28 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQ 28 (202)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 205
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.24 E-value=32 Score=26.24 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385 159 TTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSL 198 (327)
Q Consensus 159 ~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l 198 (327)
..+..|+.+..++..+...+..+...+.-+..+..++..+
T Consensus 3 ~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 3 EQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566778888888888888888888888777777777765
No 206
>PRK10869 recombination and repair protein; Provisional
Probab=76.12 E-value=92 Score=31.45 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 020385 81 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQ 110 (327)
Q Consensus 81 ~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~ 110 (327)
..+..++..+.........+++-+.|.+.+
T Consensus 167 ~~~~~~l~~l~~~~~~~~~~~d~l~fql~E 196 (553)
T PRK10869 167 HQSCRDLAQHQQQSQERAARKQLLQYQLKE 196 (553)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555543
No 207
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.88 E-value=81 Score=30.68 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHH
Q 020385 85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE 135 (327)
Q Consensus 85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~ 135 (327)
..+..-.+..+.|...+......+..+.+.++..+-=..++-..|+..+..
T Consensus 286 e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~ 336 (521)
T KOG1937|consen 286 EALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKN 336 (521)
T ss_pred HhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333444455566666777777777777777776654444444444444433
No 208
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.74 E-value=63 Score=28.90 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 142 EARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQ 174 (327)
Q Consensus 142 ~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~ 174 (327)
.+..+++..+..-+...+++=++..++..|...
T Consensus 113 yiReLEQaNDdLErakRati~sleDfeqrLnqA 145 (333)
T KOG1853|consen 113 YIRELEQANDDLERAKRATIYSLEDFEQRLNQA 145 (333)
T ss_pred HHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHH
Confidence 333444444444444444444444444333333
No 209
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.65 E-value=27 Score=29.10 Aligned_cols=63 Identities=25% Similarity=0.469 Sum_probs=34.9
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSL 83 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l 83 (327)
.+..+..+...+.+++..+..++..|..++..+... |-..++...+..|..++..+......+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSE-----PTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666666666666666664 333444444444444444444443333
No 210
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.46 E-value=29 Score=24.86 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 020385 33 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 76 (327)
Q Consensus 33 ~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l 76 (327)
.....|+.|..+-+.+-.........+..+...+.++...+..+
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333333333333333333333333333
No 211
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.69 E-value=67 Score=28.73 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=22.4
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE 53 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~ 53 (327)
.=..+..+...+..+.+.+..++..|..+...++.+..
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666666665543
No 212
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.55 E-value=67 Score=28.67 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLN 77 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~ 77 (327)
.+..+..++..|+..+..+.
T Consensus 57 e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 213
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.27 E-value=77 Score=28.80 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020385 257 SKRQDLEARQKK--VEAVVTEVDAITSKTKFVKESGAAKLQEL 297 (327)
Q Consensus 257 ~~~~el~~~~~~--~~~~~~ei~~le~~i~~~~~~~e~e~~~~ 297 (327)
++-++|..++.+ +.+.+.+|..+++-|+-++.+....-.-|
T Consensus 105 WIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGi 147 (305)
T PF15290_consen 105 WIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGI 147 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhH
Confidence 334555555554 34455677777777777666665443333
No 214
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.19 E-value=43 Score=25.82 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=24.2
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER 54 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~ 54 (327)
.+..+...+..+..++..+...+..++.++.++.....+
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666665443
No 215
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=71.72 E-value=39 Score=25.15 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHH
Q 020385 81 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 133 (327)
Q Consensus 81 ~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~l 133 (327)
..+..++..+.....+|..+|.........+..=+..+..+++...+.++..|
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666777777777777777777777777777666666666655544
No 216
>PRK02119 hypothetical protein; Provisional
Probab=71.70 E-value=32 Score=24.61 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 020385 27 LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69 (327)
Q Consensus 27 l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL 69 (327)
+..++..|+..++-.+.-|+.+..........+..+...+..|
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444545555444444444444443333333333333333
No 217
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=71.53 E-value=32 Score=24.05 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=14.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
+..+.+.+......+..+|..|..+.......
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 218
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.92 E-value=34 Score=24.17 Aligned_cols=55 Identities=13% Similarity=0.261 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385 65 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 65 ~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
.+..|...+..+..+-.........+..+.......|..+-..+..+..+++.|+
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444443
No 219
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=70.75 E-value=83 Score=28.53 Aligned_cols=23 Identities=4% Similarity=0.202 Sum_probs=8.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhc
Q 020385 96 ALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 96 ~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
++.++|..+...-..+...+..+
T Consensus 232 e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 232 EMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 220
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.48 E-value=24 Score=24.79 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 020385 29 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ 74 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~ 74 (327)
.++..|+..++-.+.-|+.+..........+..++..+..|..++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444444444444444444433333
No 221
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=70.25 E-value=1.2e+02 Score=30.01 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=17.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 23 DLTRLDEQRSELEDKISQLNAEIAAYNEVR 52 (327)
Q Consensus 23 ~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~ 52 (327)
-.+-+..++..+..+....+.++..++.+.
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555666666666666666665543
No 222
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.05 E-value=70 Score=27.38 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 020385 292 AKLQELASKAEEIVEKFQQYTNSI 315 (327)
Q Consensus 292 ~e~~~~~~~~~~L~~~~~~Y~~~l 315 (327)
..+..+......+..+++.|.+.+
T Consensus 135 ~~i~~~~~~~~~~~~~anrwTDNI 158 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAANRWTDNI 158 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444444455555555555554443
No 223
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.92 E-value=93 Score=28.79 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 285 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~ 285 (327)
++..+-.+-..++.+=-..++++.--..+...+++....
T Consensus 255 k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lse 293 (310)
T PF09755_consen 255 KMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSE 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444555544444445555544443
No 224
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=69.90 E-value=23 Score=24.30 Aligned_cols=43 Identities=23% Similarity=0.443 Sum_probs=23.5
Q ss_pred hhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 8 NLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 8 ~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+||.-+...+..|......+......|..++..|...+..+..
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555555555555555554443
No 225
>PRK04406 hypothetical protein; Provisional
Probab=69.44 E-value=39 Score=24.28 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 28 DEQRSELEDKISQLNAEIAAYNEVRE 53 (327)
Q Consensus 28 ~~~~~~l~~~~~~l~~~i~~~k~~~~ 53 (327)
..++..|+..++-.+.-|+.+.....
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~ 35 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALS 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 226
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.30 E-value=50 Score=25.44 Aligned_cols=70 Identities=16% Similarity=0.336 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 020385 29 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTE 105 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~ 105 (327)
....++......|+..|+..+.-+ .++-++...|...+..+.....+...++..+..+..++...++.-+
T Consensus 9 as~~el~n~La~Le~slE~~K~S~-------~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQ-------GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555532 2334444556666666666666666666666666666665555533
No 227
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.08 E-value=36 Score=23.76 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 218 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAI 279 (327)
Q Consensus 218 e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~l 279 (327)
.+..++.++=..+..+..++..+.. ...++..+...+.+..+....++++.......+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~----q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRA----QEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445555555555556666666666 666666666666666666666666555444433
No 228
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=69.06 E-value=1.5e+02 Score=30.97 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 020385 33 ELEDKISQLNAEIAAYNEVRERELPLVQEV 62 (327)
Q Consensus 33 ~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l 62 (327)
.......-|..++..++.....-+..+...
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555444444433333
No 229
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=68.25 E-value=92 Score=28.10 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcC
Q 020385 88 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 125 (327)
Q Consensus 88 ~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~s 125 (327)
.....+...|..++..++..|..+..+..-|.+|-...
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~E 114 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHE 114 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445556666777777777777777777777776543
No 230
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.91 E-value=42 Score=31.57 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385 41 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 41 l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s 120 (327)
+...+.............+...+..+..+...+..|.........+...+..+......+|..+...+..+..|..|=..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Q ss_pred hhhcCHHHHHHHHHHH
Q 020385 121 KIVQSPEKLQRTLEEK 136 (327)
Q Consensus 121 ~iv~spe~lk~~le~l 136 (327)
.+..-...+...+=|.
T Consensus 299 ~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 299 QIEELEEQLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHH
No 231
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=67.70 E-value=61 Score=25.85 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 251 VKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK 287 (327)
Q Consensus 251 ~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~ 287 (327)
++.++.+++.++..+...++.++.-+.-++.+|..+.
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555555665555543
No 232
>smart00338 BRLZ basic region leucin zipper.
Probab=67.50 E-value=25 Score=24.20 Aligned_cols=43 Identities=16% Similarity=0.360 Sum_probs=20.9
Q ss_pred hhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 8 NLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 8 ~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+||+-+...+.++..+...+......|...+..|..++..++.
T Consensus 19 ~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 19 RSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444444444444444444443
No 233
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=67.14 E-value=84 Score=27.22 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=55.4
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 14 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEK 93 (327)
Q Consensus 14 ~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~ 93 (327)
|.+|..- .++.-+..++...+.+++.--.+|-.++..+......+......+..+...+..-.-..+....++...+.+
T Consensus 3 WevCqk~-GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 3 WEVCQKS-GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred chHhhhh-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 4455433 335555666666666666666666666665544444555555555555554544444455555555555555
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 94 TGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 94 ~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
..-+..++..+...+..+......+
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 5555555555555555555544443
No 234
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.64 E-value=28 Score=22.37 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=22.9
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
.|+-|-..++.+....+.+..++..|.+++..++..
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666666666666666666554
No 235
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=66.59 E-value=1.2e+02 Score=28.65 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 020385 26 RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK 78 (327)
Q Consensus 26 ~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~ 78 (327)
.....+..+..+...++.++..++......-|.+..+..++..|...|.....
T Consensus 211 ~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~ 263 (362)
T TIGR01010 211 AQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRN 263 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554444456666666666666666655443
No 236
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=66.38 E-value=53 Score=24.62 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 020385 159 TTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKAR 201 (327)
Q Consensus 159 ~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~ 201 (327)
..+..|..+...+..+...+..+..++..+..+..++..+.+.
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3456677778888888888888888888888777777766333
No 237
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=66.34 E-value=1.5e+02 Score=29.68 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch---hhhhcCHHHHHHHHHH-HHH-HH
Q 020385 66 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR---SKIVQSPEKLQRTLEE-KKS-IR 140 (327)
Q Consensus 66 ~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~---s~iv~spe~lk~~le~-l~~-~~ 140 (327)
..........+.....++ ..|-.+......+...+.-+.+.......+....+ .+|.++|+++...|.. ... .-
T Consensus 189 tl~~e~~~~~L~~~~~A~-~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~ 267 (511)
T PF09787_consen 189 TLKKEIERQELEERPKAL-RHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGF 267 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccccc
Confidence 333334444455555533 45777888888999999999999999999999998 7899999997665555 111 00
Q ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 141 E------EARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS 187 (327)
Q Consensus 141 ~------~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~ 187 (327)
. ++..+. .+.....+-+..+...|..+...+++.+.++..
T Consensus 268 ~~~~~~~el~~l~-------~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 268 DSSTNSIELEELK-------QERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred ccccchhcchhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 122222 344444444555555666666666655555433
No 238
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=66.33 E-value=48 Score=24.12 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 020385 273 VTEVDAITSKTKFVKESGAAKLQELASK 300 (327)
Q Consensus 273 ~~ei~~le~~i~~~~~~~e~e~~~~~~~ 300 (327)
+..+..++..-..++..++.||..+...
T Consensus 45 r~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 45 RQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555565555555443
No 239
>PRK00295 hypothetical protein; Provisional
Probab=65.97 E-value=44 Score=23.50 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 020385 30 QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69 (327)
Q Consensus 30 ~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL 69 (327)
++..|+..++-.+.-|+.+..........+..++..+..|
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333333333333
No 240
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=65.81 E-value=49 Score=24.06 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 020385 240 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 309 (327)
Q Consensus 240 ~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~ 309 (327)
+.+..+..++.+..+....+...+..+.++..-..++..+...+-.+..+|.+=...-+.+..+|+..++
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444677777777777777777787788777888888888888888888777777777777776654
No 241
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=65.13 E-value=60 Score=24.84 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH-HHHHHHHH
Q 020385 82 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS-IREEARDA 146 (327)
Q Consensus 82 ~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~-~~~~l~~~ 146 (327)
.|..-+..+......+...+..+...+..+.......+..|...-+.+...|++.+. ....+...
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666777777777777777778888888778888888777666 34444433
No 242
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.04 E-value=62 Score=24.94 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=32.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 18 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 97 (327)
Q Consensus 18 ~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l 97 (327)
..+...++.....+..|..+...|...+.. ++..+....+.+.+++.....+...++..|.-+-.+
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~--------------L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l 84 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQS--------------LQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLEL 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444 444444444444444444444444444444444334
Q ss_pred HHHHh
Q 020385 98 DEKFS 102 (327)
Q Consensus 98 ~~~l~ 102 (327)
...+.
T Consensus 85 ~~r~~ 89 (107)
T PF09304_consen 85 ESRLL 89 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 243
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.83 E-value=95 Score=26.98 Aligned_cols=114 Identities=15% Similarity=0.229 Sum_probs=55.1
Q ss_pred hhhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 020385 6 FLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS-LR 84 (327)
Q Consensus 6 f~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~-l~ 84 (327)
|-||..--...+..+....++-. ..+...+..++..|.+.+............+...+.++...+..+...-.. +.
T Consensus 3 f~Rl~~~~~a~~~~~ld~~EDP~---~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~ 79 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAEDPE---KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA 79 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666555555666655555433 344444555555555555554444444445555555555555544443111 11
Q ss_pred H---H-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 85 T---T-LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 85 ~---~-~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
. + ...+=..+..+...+..+...+..+...+..|+..+
T Consensus 80 ~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l 121 (221)
T PF04012_consen 80 AGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQL 121 (221)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 122334444455555555555555555555554433
No 244
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.74 E-value=95 Score=26.97 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=9.0
Q ss_pred CHHH-HHHHHHHHHH
Q 020385 125 SPEK-LQRTLEEKKS 138 (327)
Q Consensus 125 spe~-lk~~le~l~~ 138 (327)
+|+. |...|.+|..
T Consensus 23 DP~~~l~q~ird~e~ 37 (221)
T PF04012_consen 23 DPEKMLEQAIRDMEE 37 (221)
T ss_pred CHHHHHHHHHHHHHH
Confidence 5666 6666666666
No 245
>PRK04325 hypothetical protein; Provisional
Probab=63.52 E-value=52 Score=23.54 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020385 30 QRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 30 ~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
++..|+..++-.+.-|+.+...
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~v 31 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNAT 31 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 246
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=63.46 E-value=1.4e+02 Score=28.56 Aligned_cols=67 Identities=9% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 98 DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS---IREEARDAEKLAMQSFQEKTTTLEVYQKTL 168 (327)
Q Consensus 98 ~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~---~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e 168 (327)
...+..+...+..+-..+..++++-..|...++..-.+.+. .+..|...=.-. +.++-.+.++.++.
T Consensus 56 ~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~L----krL~MLv~a~~qL~ 125 (383)
T PF04100_consen 56 EEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTL----KRLQMLVTAVEQLK 125 (383)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34566777777777888888877777777776666666555 333333332222 55555555555444
No 247
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=63.35 E-value=44 Score=22.60 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 020385 264 ARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYT 312 (327)
Q Consensus 264 ~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~ 312 (327)
.+...+..+...|+.|.+.|..++.....-..++...-.+|-..+..|.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~ 55 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYK 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Confidence 3344444445666666666666666666666666677777777777664
No 248
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=63.25 E-value=65 Score=24.53 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=12.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 22 EDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
.++..+..++..+......+..++.++..
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~ 34 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKK 34 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 249
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.81 E-value=2e+02 Score=30.10 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 64 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 103 (327)
Q Consensus 64 ~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~ 103 (327)
.++..+..++..++.....|.+++..+.+....|..++..
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555554444444433
No 250
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=62.41 E-value=61 Score=23.94 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 020385 57 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF 106 (327)
Q Consensus 57 ~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~ 106 (327)
|.+.++..++..|..++..+......++......+.+..+..++|.+..|
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~ 73 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDY 73 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 46777777777777777777777777777777777777777777777665
No 251
>PRK04325 hypothetical protein; Provisional
Probab=62.14 E-value=55 Score=23.41 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 41 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 41 l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
++..|.++..+..-.+..+.+|..-+......|..+......|..++
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444555555555555544444444444444433
No 252
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=61.89 E-value=93 Score=25.90 Aligned_cols=22 Identities=0% Similarity=0.126 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 020385 169 KKMSKQSAQMQAILEQVNSAKS 190 (327)
Q Consensus 169 ~el~~~~~~l~~~~~el~~~~~ 190 (327)
.|+........+++..+....+
T Consensus 77 ~dik~AYe~A~~lQ~~L~~~re 98 (159)
T PF05384_consen 77 EDIKEAYEEAHELQVRLAMLRE 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444
No 253
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.80 E-value=1.5e+02 Score=28.21 Aligned_cols=12 Identities=0% Similarity=0.205 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 020385 296 ELASKAEEIVEK 307 (327)
Q Consensus 296 ~~~~~~~~L~~~ 307 (327)
.|.....+|+..
T Consensus 332 ~IKqAl~kLk~E 343 (359)
T PF10498_consen 332 KIKQALTKLKQE 343 (359)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 254
>PRK00736 hypothetical protein; Provisional
Probab=61.73 E-value=53 Score=23.06 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 020385 30 QRSELEDKISQLNAEIAAYNEVRERELPLVQEV 62 (327)
Q Consensus 30 ~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l 62 (327)
++..|+..++-.+.-|+.+..........+..+
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L 38 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQM 38 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333333333
No 255
>PRK02793 phi X174 lysis protein; Provisional
Probab=61.37 E-value=56 Score=23.22 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 020385 29 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL 69 (327)
.++..|+..++-.+.-|+.+..........+..++..+..|
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333333333333333
No 256
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=61.23 E-value=2.2e+02 Score=29.90 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 32 SELEDKISQLNAEIAAYNEVRERELP------------LVQEVDAKVKELRQTIQDLNKHQVSLRTT 86 (327)
Q Consensus 32 ~~l~~~~~~l~~~i~~~k~~~~~~e~------------~~~~l~~~~~eL~~~i~~l~~~q~~l~~~ 86 (327)
.-+..+|+.|...+.-+...+.+.+. ++-.++--+-.|+.++.+.-+.|+.|+..
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~k 456 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSK 456 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 34555666666666555554444332 55666667777777777666666655544
No 257
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=61.17 E-value=66 Score=32.28 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ 113 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~ 113 (327)
++-+++...++|...|.++|.+++.+...+-+-+.+...|...+++..-.+.++.+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44445555555555566666666555555555555555555555555555444443
No 258
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=60.86 E-value=73 Score=24.37 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 35 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 79 (327)
Q Consensus 35 ~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~ 79 (327)
-.++..|.++..-++....++......+...+..-.+.|+.+...
T Consensus 4 a~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE 48 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQE 48 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666655444444444444444444444443333
No 259
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=60.85 E-value=1.4e+02 Score=30.29 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH-HHHHHHHHHH
Q 020385 97 LDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS-IREEARDAEK 148 (327)
Q Consensus 97 l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~-~~~~l~~~e~ 148 (327)
...++..+...+....+.+..++..+..+++.++..+.+++. -...++.+..
T Consensus 217 ~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 217 IKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHH
Confidence 334555555555555666666666666777777777777777 3444444443
No 260
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=60.83 E-value=73 Score=24.37 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhh
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 123 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv 123 (327)
+..+.+.+.-|+.-+.+-..+-..|...+.........+..++..+.|.-..+...++.|+.-+.
T Consensus 7 YsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555555555555555555544333
No 261
>PRK04406 hypothetical protein; Provisional
Probab=60.59 E-value=60 Score=23.31 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 40 QLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 40 ~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
.++..|.++..++.-.+..+.+|..-+......|..+......|..++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555544444444443333
No 262
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.94 E-value=71 Score=24.66 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 020385 34 LEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI 73 (327)
Q Consensus 34 l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i 73 (327)
+++.+..++.++..+-..+......+.++-.+|..|+-+.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333444444444443333
No 263
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=59.92 E-value=73 Score=24.07 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 132 TLEEKKS-IREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKS 190 (327)
Q Consensus 132 ~le~l~~-~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~ 190 (327)
.|+.|.. .-..+..+...+ ..+...++.+..-...+..+..+++.|...+..++.
T Consensus 25 LLe~mN~~~~~kY~~~~~~~----~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIA----AGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554 455555565655 666666666666666777777777777777766665
No 264
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.69 E-value=1.1e+02 Score=26.17 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=4.5
Q ss_pred HHHHHHhHHHHH
Q 020385 215 KLIERQGKVEQL 226 (327)
Q Consensus 215 ~~~e~~~~~~~l 226 (327)
...+++.++.++
T Consensus 132 ~i~~Le~ki~el 143 (190)
T PF05266_consen 132 EIKELEMKILEL 143 (190)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 265
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.66 E-value=51 Score=23.14 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 44 EIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 44 ~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
.|.++..++.-.+..+.++..-+......|..+......|..++
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333334444444444444444444444333333333
No 266
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.54 E-value=1.5e+02 Score=27.52 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=21.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 020385 22 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ 74 (327)
Q Consensus 22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~ 74 (327)
+.+++-.+++..|...+..+......+..........+..+.++...+..++.
T Consensus 15 ~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~ 67 (309)
T PF09728_consen 15 NKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS 67 (309)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333333333334444444444443333
No 267
>PRK02119 hypothetical protein; Provisional
Probab=59.37 E-value=62 Score=23.08 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 40 QLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 40 ~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
.++..|.++..+..-.+..+.+|..-+..-...|..+......|..++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554444444444433
No 268
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.12 E-value=1.2e+02 Score=26.11 Aligned_cols=53 Identities=26% Similarity=0.321 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385 67 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 67 ~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
..+...|..+..+...+......++..+.....+|..++.....+.+++...+
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444455555555555555555555443
No 269
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=59.05 E-value=92 Score=24.94 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=16.8
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
.+..+...+..+...+..+...+..+...+.++..
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444554444444444444444
No 270
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=58.59 E-value=45 Score=24.63 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385 164 YQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND 204 (327)
Q Consensus 164 ~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~ 204 (327)
+..++..++.|...++.+...+...+-.......+..++..
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~ 47 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNE 47 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHH
Confidence 55677788888888888877776665544444444444333
No 271
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=57.77 E-value=12 Score=34.81 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 86 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 86 ~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
.+..+......+...+..+...+..+...+..|
T Consensus 85 tV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~L 117 (326)
T PF04582_consen 85 TVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDL 117 (326)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHH
Confidence 333333333333333333333333333333333
No 272
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=57.68 E-value=78 Score=23.67 Aligned_cols=77 Identities=19% Similarity=0.432 Sum_probs=35.7
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------hhhHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE---------------LPLVQEVDAKVKELRQTIQDLNKHQ 80 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~---------------e~~~~~l~~~~~eL~~~i~~l~~~q 80 (327)
-|..+..+...+..++..+......+..-+.++..-.... ......+......+...|..+....
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~ 85 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQL 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444444444432220 0133444445555555555555555
Q ss_pred HHHHHHHHHHHH
Q 020385 81 VSLRTTLNKLKE 92 (327)
Q Consensus 81 ~~l~~~~~~lk~ 92 (327)
..+..++..++.
T Consensus 86 ~~l~~~l~~~~~ 97 (106)
T PF01920_consen 86 KYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444444443
No 273
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.61 E-value=1.2e+02 Score=25.78 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=18.9
Q ss_pred hhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 8 NLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 8 ~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+||-+|-.-+..+.-=.--...+.-.+-.++..++..++..+.
T Consensus 97 ~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~k 139 (192)
T PF05529_consen 97 KFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKK 139 (192)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554433333333333344444444444444444444443
No 274
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=57.32 E-value=1.8e+02 Score=27.66 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=16.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAA 47 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~ 47 (327)
+..+...+..++..+......+...+..
T Consensus 79 ~~~~l~~l~~~~~~l~a~~~~l~~~~~~ 106 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEVARLRAEADS 106 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445566666666666666666555544
No 275
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.89 E-value=2.6e+02 Score=29.51 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCH
Q 020385 88 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSP 126 (327)
Q Consensus 88 ~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~sp 126 (327)
..+........+.++.....+.++...+..|++.+..+.
T Consensus 606 ~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~k 644 (769)
T PF05911_consen 606 EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAK 644 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555555555555555555555333
No 276
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=56.79 E-value=1e+02 Score=24.70 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK 199 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~ 199 (327)
..+......+..+..++..+...+..+...+..+..+...+..+.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666777777777777777777777777776665666654
No 277
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=56.77 E-value=2.7e+02 Score=29.65 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=48.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG 290 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~ 290 (327)
++..+..+...+..+..++..+....+++.... ...++.+...+.+.++...-++--.+.--...+..-|..+++..
T Consensus 779 lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~--~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~r 855 (984)
T COG4717 779 LEEAIDALDEEVEELHAQVAALSRQIAQLEGGG--TVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERR 855 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444555555555555555555666665544 57778888888888888888776666655556666666555443
No 278
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=56.64 E-value=2.9e+02 Score=29.92 Aligned_cols=60 Identities=30% Similarity=0.361 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 316 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~ 316 (327)
.++..++++.++...+.... .-.+.+..++.+++......+ ......+...|-..+++|+
T Consensus 864 ~y~~r~~el~~l~~~~~~~~-------~~le~i~~kl~~~ke~w~~~l---e~~V~~In~~Fs~~F~~mg 923 (1072)
T KOG0979|consen 864 QYEVREDELRELETKLEKLS-------EDLERIKDKLSDVKEVWLPKL---EEMVEQINERFSQLFSSMG 923 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhh-------hhHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHhhcc
Confidence 44545555555444444444 444455555555555544433 3333444444444455554
No 279
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.63 E-value=1.5e+02 Score=26.54 Aligned_cols=92 Identities=14% Similarity=0.289 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385 25 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
..+..++.+++.+.......+..........+......+.+-..|...-..+......|..........+..|..++...
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554444444433333334444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q 020385 105 EFDLVQSVQQNA 116 (327)
Q Consensus 105 ~~~i~~~~~e~~ 116 (327)
...+..+..+..
T Consensus 88 ~~~i~~l~ee~~ 99 (246)
T PF00769_consen 88 EAEIARLEEESE 99 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 280
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.53 E-value=1.5e+02 Score=26.47 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHh
Q 020385 275 EVDAITSKTKFVKES 289 (327)
Q Consensus 275 ei~~le~~i~~~~~~ 289 (327)
.+..+...|++-.-+
T Consensus 132 Rl~~L~~~l~~~dv~ 146 (251)
T PF11932_consen 132 RLARLRAMLDDADVS 146 (251)
T ss_pred HHHHHHHhhhccCCC
Confidence 344455555443333
No 281
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=56.52 E-value=97 Score=25.04 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=29.6
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 020385 49 NEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF 106 (327)
Q Consensus 49 k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~ 106 (327)
..........+..+...++++...+..+.+.......++..++.+...|...+-.+-.
T Consensus 36 ~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~ 93 (141)
T PF13874_consen 36 KKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLR 93 (141)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555566666666666666666666666666666666666665554433
No 282
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.44 E-value=83 Score=26.77 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=15.0
Q ss_pred ccchhhhhhhchhhhHHHHHHhhhHHHHHHHHHHH
Q 020385 3 LFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDK 37 (327)
Q Consensus 3 ~INf~~Free~~~~~~~l~~~~e~l~~~~~~l~~~ 37 (327)
|..|+.|=-=.+.-+-.+..+.-.+.+.......+
T Consensus 106 IsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq 140 (192)
T PF05529_consen 106 ISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQ 140 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455553333333334444444444444444333
No 283
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=56.38 E-value=84 Score=23.62 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=38.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE 92 (327)
Q Consensus 19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~ 92 (327)
.+....+.+.........+...++..+..+..+.......+-...+....+...+..++.....-..-+..|++
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555444333333333333
No 284
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.28 E-value=2.3e+02 Score=28.65 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=19.9
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 15 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 15 ~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
..|..+..+...+..+.+....+.+-|+-+++++..
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~ 199 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQFQLEELEE 199 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555544
No 285
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=56.23 E-value=1.1e+02 Score=24.93 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 020385 257 SKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 316 (327)
Q Consensus 257 ~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~ 316 (327)
.....+...++++..+-. .++.+|+.++..++.++..+...-..|.+.+..|...-.
T Consensus 7 ~al~ki~~l~~~~~~i~~---~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r 63 (149)
T PF07352_consen 7 WALRKIAELQREIARIEA---EANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANR 63 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 334445555555554433 567788889999999999999999999999999987543
No 286
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.12 E-value=1.2e+02 Score=25.46 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 020385 25 TRLDEQRSELEDKISQLNAEIA 46 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~ 46 (327)
-.+.++++.+.....-.+++|.
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik 110 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIK 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 287
>COG5570 Uncharacterized small protein [Function unknown]
Probab=56.02 E-value=33 Score=22.71 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=10.7
Q ss_pred HHhhhHHHHHHHHHHHHhchhh
Q 020385 100 KFSQTEFDLVQSVQQNADLRSK 121 (327)
Q Consensus 100 ~l~~~~~~i~~~~~e~~~L~s~ 121 (327)
.|.+++.....+..+|++|+++
T Consensus 34 ~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 34 AIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444455555555543
No 288
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.98 E-value=1.7e+02 Score=27.09 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 111 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~ 111 (327)
+|.-|...+.+++..+..+++...-...++..+|.....|..++..+...|...
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433334444444444444444444444444333
No 289
>PF15294 Leu_zip: Leucine zipper
Probab=55.91 E-value=1.6e+02 Score=26.83 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385 83 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 83 l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s 120 (327)
+..++..++.+...|...+..+......+-.+...|..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~ 167 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEA 167 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555544433
No 290
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=54.69 E-value=96 Score=24.11 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 020385 33 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK 78 (327)
Q Consensus 33 ~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~ 78 (327)
.+++.+..++.++..+-..+......+.++-.+|..|+-+...|..
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544444444455555555555444443333
No 291
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=53.74 E-value=2.2e+02 Score=27.78 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=50.8
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 020385 15 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ 80 (327)
Q Consensus 15 ~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q 80 (327)
.+++|. .+......-+..|+.+...++.++..+........|.+..+...+..|+.+|...+...
T Consensus 273 gvlDP~-~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 273 KDIDPK-ETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred CCcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 455665 56777778888888888888888888877767777888888888888888888766664
No 292
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=53.67 E-value=80 Score=23.05 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 89 KLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 89 ~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
.+......|..++...+.....+..++.-|..||
T Consensus 27 ~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 27 ELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444455555554444
No 293
>PF14992 TMCO5: TMCO5 family
Probab=53.56 E-value=1.8e+02 Score=26.59 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=26.1
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
...+......++.+++.....+..|+.+|......
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~ 47 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHI 47 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34566677778888888888888888888877663
No 294
>PRK11546 zraP zinc resistance protein; Provisional
Probab=53.22 E-value=1.2e+02 Score=24.67 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 020385 267 KKVEAVVTEVDAITSKTKFVKESGAAKLQE 296 (327)
Q Consensus 267 ~~~~~~~~ei~~le~~i~~~~~~~e~e~~~ 296 (327)
.++.++..||..|..++...+..+..++.+
T Consensus 89 ~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 89 SKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666655555544
No 295
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=53.21 E-value=43 Score=31.96 Aligned_cols=8 Identities=25% Similarity=0.783 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 020385 69 LRQTIQDL 76 (327)
Q Consensus 69 L~~~i~~l 76 (327)
+...+..+
T Consensus 110 lkkEie~I 117 (370)
T PF02994_consen 110 LKKEIENI 117 (370)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 296
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.17 E-value=1.9e+02 Score=26.78 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=61.6
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 96 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~ 96 (327)
+.++.+++...+-...+|..+-..|.=++.-++..+...+..+.++++++.+....+.-+......|+.++..++.....
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556666666666777777777777777777777777666555556666666677777777777766
Q ss_pred HHHHHhhhHHHHHH
Q 020385 97 LDEKFSQTEFDLVQ 110 (327)
Q Consensus 97 l~~~l~~~~~~i~~ 110 (327)
...-|+..+.-|+.
T Consensus 166 rdeli~khGlVlv~ 179 (302)
T PF09738_consen 166 RDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHCCeeeCC
Confidence 66666666666654
No 297
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=52.88 E-value=1.6e+02 Score=25.95 Aligned_cols=100 Identities=12% Similarity=0.213 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhh---hhcCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK---IVQSPEK-----LQRTLEEKKSIREEARDAEKLAMQSFQE 156 (327)
Q Consensus 85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~---iv~spe~-----lk~~le~l~~~~~~l~~~e~~~~~~~~~ 156 (327)
..+...+.+...+...|.+.-..+..+..++..+++. ...+|.. |...|..... .+.......-.....
T Consensus 31 ~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~---~L~~~q~~l~~~~~~ 107 (240)
T PF12795_consen 31 DEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQA---QLQELQEQLQQENSQ 107 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4556667777788888888888888888888888665 4444433 3333333222 222222222112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 157 KTTTLEVYQKTLKKMSKQSAQMQAILEQVNS 187 (327)
Q Consensus 157 l~~~~e~~~~~e~el~~~~~~l~~~~~el~~ 187 (327)
+.........+...+......++++...+..
T Consensus 108 l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 108 LIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333444555666666666666666654
No 298
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.81 E-value=2.2e+02 Score=27.44 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHH
Q 020385 65 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEAR 144 (327)
Q Consensus 65 ~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~ 144 (327)
.+..+..++.+....+..|...+..++.. +..++.-....+.+-....++|..++....+-.+..|..++. .+.
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKq---eLa 286 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQ---ELA 286 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34444455555556666666666666553 222233333333444444445544444445555555555544 222
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 145 DAEKLAM-QSFQEKTTTLEVYQKTLKKMSKQS 175 (327)
Q Consensus 145 ~~e~~~~-~~~~~l~~~~e~~~~~e~el~~~~ 175 (327)
..+.++. +.+...++..+.+..+...|.++-
T Consensus 287 ~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 287 SMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2332221 122333444444444444544444
No 299
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.75 E-value=70 Score=21.63 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 61 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 101 (327)
Q Consensus 61 ~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l 101 (327)
+|..++..|..++..+......++.+....+.+..+....|
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433333
No 300
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=52.56 E-value=28 Score=26.57 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=49.0
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcC
Q 020385 51 VRERELPLVQEVDAKVKELRQTIQ-DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 125 (327)
Q Consensus 51 ~~~~~e~~~~~l~~~~~eL~~~i~-~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~s 125 (327)
.+..-+.....+..++.+|...|. +.|+....-+.+...+..+...+...+......+..+..++..|+.-+...
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~ 84 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESM 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445566677777777777775 566665555556666666777777777777777777777777776555543
No 301
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.55 E-value=2e+02 Score=28.29 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=17.4
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+.-+..+...+..++..+..+|..|..+.+.++.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555554444
No 302
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=52.33 E-value=42 Score=30.61 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=26.7
Q ss_pred hhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 7 LNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 7 ~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
+|||.-+......+..+...+..+-++|.++...++.+|.-++.-
T Consensus 240 tRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 240 TRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666655555555555555555555553
No 303
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=52.12 E-value=91 Score=22.76 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 020385 31 RSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK 78 (327)
Q Consensus 31 ~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~ 78 (327)
...+..++..|+..|..+-.....-..+...+..+|.-|...|..|-.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555444444444566666666666666665533
No 304
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.89 E-value=2.5e+02 Score=27.77 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=52.8
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 96 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~ 96 (327)
|.+|.....--.+........+..+...+.++......--+.+.++..+..+|.-+|..+=-+|+.++..=-.|......
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~ 415 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEE 415 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHH
Confidence 44444444444445555555666666666666644344445666666666777777766666666666665555555555
Q ss_pred HHHHHhhhHHHH
Q 020385 97 LDEKFSQTEFDL 108 (327)
Q Consensus 97 l~~~l~~~~~~i 108 (327)
|..++..+...+
T Consensus 416 Lr~Kldtll~~l 427 (508)
T KOG3091|consen 416 LRAKLDTLLAQL 427 (508)
T ss_pred HHHHHHHHHHHh
Confidence 555555544433
No 305
>PRK10698 phage shock protein PspA; Provisional
Probab=51.75 E-value=1.7e+02 Score=25.73 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=12.8
Q ss_pred CHHH-HHHHHHHHHHHHHHH
Q 020385 125 SPEK-LQRTLEEKKSIREEA 143 (327)
Q Consensus 125 spe~-lk~~le~l~~~~~~l 143 (327)
+|.+ |.-.|.+|......+
T Consensus 24 DP~k~l~q~i~em~~~l~~~ 43 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEV 43 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 6885 777778877744433
No 306
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.74 E-value=2.6e+02 Score=27.86 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020385 166 KTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLE 234 (327)
Q Consensus 166 ~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~ 234 (327)
.|.+++..+..++..+..++..... ++....++++. |..++.++..++.-+....+.+.
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~---el~~q~Ee~sk-------Llsql~d~qkk~k~~~~Ekeel~ 260 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTK---ELSRQQEENSK-------LLSQLVDLQKKIKYLRHEKEELD 260 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 4555555555555555555444433 44545555444 55555555555554444444333
No 307
>PHA03011 hypothetical protein; Provisional
Probab=51.71 E-value=1e+02 Score=23.35 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=20.7
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 15 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 15 ~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+.+..+.+..+.+..+...+.++...++..+..+..
T Consensus 57 GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~ 92 (120)
T PHA03011 57 GDINAIIEILDELIAQYNELLDEYNLIENEIKDLEI 92 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655555555444
No 308
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.45 E-value=2.5e+02 Score=27.67 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 020385 83 LRTTLNKLKEKTGALDEKFSQ 103 (327)
Q Consensus 83 l~~~~~~lk~~~~~l~~~l~~ 103 (327)
+..+...++.+...+...|.+
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 309
>PRK02793 phi X174 lysis protein; Provisional
Probab=51.19 E-value=87 Score=22.25 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 41 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 41 l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
++..|.++..+..-.+..+.+|..-+......|..+......|..++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555554444444443
No 310
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.92 E-value=2e+02 Score=28.78 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=14.0
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAA 47 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~ 47 (327)
+..+..+...+...+..+.++...++..+.-
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 103 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKF 103 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 311
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=50.73 E-value=2.2e+02 Score=26.72 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 154 FQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK 189 (327)
Q Consensus 154 ~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~ 189 (327)
...+....++|-+...+...+...+.-...+...++
T Consensus 112 ~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lq 147 (401)
T PF06785_consen 112 KNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQ 147 (401)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666555555554444443333
No 312
>PRK00295 hypothetical protein; Provisional
Probab=50.54 E-value=86 Score=22.00 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 43 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 43 ~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
..|.++..+..-.+..+.++..-+......|..+......|..++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555444444444444444444443333
No 313
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=50.52 E-value=25 Score=32.69 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 020385 169 KKMSKQSAQMQAILEQVNSAK 189 (327)
Q Consensus 169 ~el~~~~~~l~~~~~el~~~~ 189 (327)
.+|...--.+.+++.+++.++
T Consensus 133 sdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 133 SDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchHhhHHHHHHHHh
Confidence 344444444444444444443
No 314
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.51 E-value=3.3e+02 Score=28.53 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 020385 295 QELASKAEEIVEKFQQYTNS 314 (327)
Q Consensus 295 ~~~~~~~~~L~~~~~~Y~~~ 314 (327)
..|.........+|...+..
T Consensus 688 ~~I~~iL~~~~~~I~~~v~~ 707 (717)
T PF10168_consen 688 RTIKEILKQQGEEIDELVKQ 707 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433
No 315
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.21 E-value=3.2e+02 Score=28.26 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020385 265 RQKKVEAVVTEVDAITSKTKF 285 (327)
Q Consensus 265 ~~~~~~~~~~ei~~le~~i~~ 285 (327)
..++++.+...++.-..++..
T Consensus 434 ~reqlk~lV~~~~k~~~e~e~ 454 (716)
T KOG4593|consen 434 EREQLKGLVQKVDKHSLEMEA 454 (716)
T ss_pred HHHHHHHHHHHHHHhhHhhhh
Confidence 333344444444444444333
No 316
>PLN02939 transferase, transferring glycosyl groups
Probab=48.87 E-value=3.9e+02 Score=29.09 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 020385 25 TRLDEQRSELEDKISQLNAEIAA 47 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~~ 47 (327)
+.++.....|+.+++-|+..+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 159 EKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhh
Confidence 44445555555555656555555
No 317
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=48.70 E-value=2.9e+02 Score=27.64 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=17.4
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIA 46 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~ 46 (327)
.++.+...+..+...+.++...++.|-..-+
T Consensus 105 ~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEe 135 (570)
T COG4477 105 EIDDIEQQLTLIEEDIEQILEDLNELVESEE 135 (570)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666555555554433
No 318
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=48.46 E-value=1.3e+02 Score=23.50 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385 164 YQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSL 198 (327)
Q Consensus 164 ~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l 198 (327)
+..+..++..+...+..+...+..+..+..-+..+
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l 42 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALIAELETAIETLEDL 42 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444455555555555555544444433344444
No 319
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=48.20 E-value=2.5e+02 Score=26.79 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=34.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHHHHHH
Q 020385 22 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE---LPLVQEVDAKVKELRQTIQDL 76 (327)
Q Consensus 22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~---e~~~~~l~~~~~eL~~~i~~l 76 (327)
...++...++..|..++.+|..+++..+...... ...-..+...+..|...|..+
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 3567888888888999999998888876533221 112223344555555555554
No 320
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=48.10 E-value=1.1e+02 Score=22.48 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=12.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
.+.....++...=..+...+..+..++..+..
T Consensus 18 ~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 18 RLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444443
No 321
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=47.68 E-value=83 Score=30.03 Aligned_cols=8 Identities=38% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 020385 131 RTLEEKKS 138 (327)
Q Consensus 131 ~~le~l~~ 138 (327)
..+++++.
T Consensus 47 ~~~E~~Kk 54 (370)
T PF02994_consen 47 MMLEDFKK 54 (370)
T ss_dssp --------
T ss_pred HHHHHhhh
Confidence 34555444
No 322
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=47.39 E-value=3e+02 Score=27.43 Aligned_cols=47 Identities=11% Similarity=0.234 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND 204 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~ 204 (327)
+.+-.-.+.+..+...+..|...+..++.-+..... ++..+..++..
T Consensus 7 ~dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~---~L~~iS~eI~~ 53 (508)
T PF04129_consen 7 QDYLKESENFADLHNQIQECDSILESLEEMLSNFQN---DLGSISSEIRS 53 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333444444555555556666666666555555555 55555444444
No 323
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=47.30 E-value=80 Score=22.19 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 92 EKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
.+...+..+++.+......+..++..|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444444
No 324
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=46.76 E-value=1.9e+02 Score=24.81 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=43.9
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chh----------------hHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER--ELP----------------LVQEVDAKVKELRQTIQDLN 77 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~--~e~----------------~~~~l~~~~~eL~~~i~~l~ 77 (327)
++.++..........++.|.+.|..|+..-.+++.---. ++. ....+.+++..+.++|..+.
T Consensus 42 lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELE 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666777777777766666666552111 110 24456666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 020385 78 KHQVSLRTTLNKLKE 92 (327)
Q Consensus 78 ~~q~~l~~~~~~lk~ 92 (327)
..|..|..+-..||+
T Consensus 122 ~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 122 DKQEELIRENLELKE 136 (195)
T ss_pred HHHHHHHHhHHHHHH
Confidence 666666555544443
No 325
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=46.65 E-value=2e+02 Score=25.19 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 251 VKLEMESKRQDLEARQKKVEAVVTEVDAITSK 282 (327)
Q Consensus 251 ~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~ 282 (327)
++.++++...+++..+.++.++..+.+.+..+
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 33334444444444444444444433333333
No 326
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.41 E-value=1.4e+02 Score=23.12 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 020385 60 QEVDAKVKELRQTIQD 75 (327)
Q Consensus 60 ~~l~~~~~eL~~~i~~ 75 (327)
..|.-+|..|+..|..
T Consensus 39 ~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 39 ARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 327
>PF13514 AAA_27: AAA domain
Probab=46.08 E-value=4.5e+02 Score=29.06 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh----hcCHHHHHHHHHHHHH
Q 020385 69 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI----VQSPEKLQRTLEEKKS 138 (327)
Q Consensus 69 L~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i----v~spe~lk~~le~l~~ 138 (327)
+.............+...+..+......+...+..+...+..........-..+ .-+|..+...+..+..
T Consensus 664 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~ 737 (1111)
T PF13514_consen 664 LLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEE 737 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 333444444455555666666666666666666666666666666665333333 1356666555555544
No 328
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.31 E-value=1.8e+02 Score=24.22 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 020385 171 MSKQSAQMQAIL 182 (327)
Q Consensus 171 l~~~~~~l~~~~ 182 (327)
|..++..|+.+.
T Consensus 82 l~~vI~fLq~l~ 93 (161)
T TIGR02894 82 LQDVISFLQNLK 93 (161)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 329
>PRK00736 hypothetical protein; Provisional
Probab=45.30 E-value=1.1e+02 Score=21.54 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=18.9
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 45 IAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 45 i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
|.++..+..-.+..+.+|..-+..-...|..+.+....|..++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444443333
No 330
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=45.20 E-value=2.2e+02 Score=25.16 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=46.9
Q ss_pred chhhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 5 PFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 79 (327)
Q Consensus 5 Nf~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~ 79 (327)
.|.||+.-=+..+.....+.++=. ..+.-.|...+..+.+.+......-.....+...++.+......|...
T Consensus 3 i~~r~~~~~~a~~~~~~dk~EDp~---~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 3 IFSRLKDLVKANINELLDKAEDPE---KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666555555555555555544 566666777777777777776666666667777777777666666655
No 331
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.07 E-value=2.3e+02 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=23.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 18 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 18 ~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
..+..+...+..++.....=|..|+..|..+...
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666667777777777777777777777643
No 332
>PRK15396 murein lipoprotein; Provisional
Probab=45.06 E-value=1.2e+02 Score=22.05 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 020385 261 DLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYT 312 (327)
Q Consensus 261 el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~ 312 (327)
+++.+...++.+..+++.+.+.++.++.+...-..+....-.+|-..+..|.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy~ 77 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKYR 77 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555566666777777777777777777766777777777777777763
No 333
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=45.06 E-value=2.9e+02 Score=26.62 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020385 231 QQLEKERNLKSEDATRAFENVKLEMESKRQ 260 (327)
Q Consensus 231 ~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~ 260 (327)
+.+.+-.+.+.+-.+.++.++++++..+-+
T Consensus 261 erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 261 ERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333334444444444555555544443
No 334
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=44.66 E-value=1.2e+02 Score=21.89 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385 163 VYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND 204 (327)
Q Consensus 163 ~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~ 204 (327)
.|..+..+|...-.++..++..+...+.-...+..+.++++.
T Consensus 5 ILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa 46 (75)
T PF05531_consen 5 ILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDA 46 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344555555555556655555555555433333334444433
No 335
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=44.58 E-value=3.4e+02 Score=27.47 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 020385 105 EFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDA 146 (327)
Q Consensus 105 ~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~ 146 (327)
+..+....+.++.|+..-..+|..+....+++...+...+..
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~ 231 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKAD 231 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777889998887777766644444433
No 336
>PHA03011 hypothetical protein; Provisional
Probab=44.03 E-value=1.4e+02 Score=22.66 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhh
Q 020385 86 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 121 (327)
Q Consensus 86 ~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~ 121 (327)
++.-+..+...+..=+.+....+..+..++++|+..
T Consensus 79 EYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 79 EYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444433
No 337
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.93 E-value=2.4e+02 Score=27.44 Aligned_cols=30 Identities=3% Similarity=0.100 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 161 LEVYQKTLKKMSKQSAQMQAILEQVNSAKS 190 (327)
Q Consensus 161 ~e~~~~~e~el~~~~~~l~~~~~el~~~~~ 190 (327)
++.+..+..+...+...++.+..+.+....
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk 56 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSK 56 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544443
No 338
>PRK15396 murein lipoprotein; Provisional
Probab=43.53 E-value=1.3e+02 Score=21.91 Aligned_cols=44 Identities=11% Similarity=0.373 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 101 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l 101 (327)
.+.++..++..|..++..+......++......+++..+..++|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333
No 339
>PF14282 FlxA: FlxA-like protein
Probab=43.10 E-value=1.5e+02 Score=22.70 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H---hhchhhHHHHHHHHHHHHHHHHHHHH
Q 020385 28 DEQRSELEDKISQLNAEIAAYNEV-R---ERELPLVQEVDAKVKELRQTIQDLNK 78 (327)
Q Consensus 28 ~~~~~~l~~~~~~l~~~i~~~k~~-~---~~~e~~~~~l~~~~~eL~~~i~~l~~ 78 (327)
...+..|...+..|..+|..+... . ......+..++..+..|...|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777766662 1 11122444444455555554444433
No 340
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.86 E-value=1.1e+02 Score=21.06 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385 85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
.++...+...-....+|.+.......+..++..|+
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 341
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.54 E-value=1.7e+02 Score=23.04 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=13.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
.....+..+..++..+......++.++.+...
T Consensus 11 ~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~ 42 (121)
T PRK09343 11 AQLAQLQQLQQQLERLLQQKSQIDLELREINK 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 342
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=42.42 E-value=1.3e+02 Score=21.96 Aligned_cols=42 Identities=29% Similarity=0.484 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 99 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~ 99 (327)
.+.-+...+..+...+.++...|..|...+..+..+..++..
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777787777777666666555544
No 343
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=42.12 E-value=1.5e+02 Score=22.28 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHH
Q 020385 92 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE 127 (327)
Q Consensus 92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe 127 (327)
.+++.-..+.-.+......+..+...|+..+..|.+
T Consensus 38 ~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~ 73 (96)
T PF08647_consen 38 AEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSE 73 (96)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Confidence 333333333333344444444444455444444433
No 344
>PRK00846 hypothetical protein; Provisional
Probab=42.06 E-value=1.3e+02 Score=21.74 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 41 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLN 88 (327)
Q Consensus 41 l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~ 88 (327)
++..|.++.....-.+..+.++..-+......|..+......+..++.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544444445555555555544444444444444444443
No 345
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=41.87 E-value=2.6e+02 Score=25.00 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385 25 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
+++.-.++.|.-++-.|+-++.+.-...-+......+...--.+|+.++.++.+++....-...=+|.+...+..+-.+-
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eR 91 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRER 91 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHH
Confidence 34444555666666666666655555444444444444444556667777777777777777777888888888888888
Q ss_pred HHHHHHHHHHHHhc
Q 020385 105 EFDLVQSVQQNADL 118 (327)
Q Consensus 105 ~~~i~~~~~e~~~L 118 (327)
++.|..+-++.-+=
T Consensus 92 n~Li~~llqel~RH 105 (277)
T PF15030_consen 92 NRLITHLLQELHRH 105 (277)
T ss_pred HHHHHHHHHHHHHh
Confidence 88877777766543
No 346
>PRK00846 hypothetical protein; Provisional
Probab=41.11 E-value=1.4e+02 Score=21.66 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 020385 42 NAEIAAYNE 50 (327)
Q Consensus 42 ~~~i~~~k~ 50 (327)
+.-|+.+..
T Consensus 26 e~tIe~LN~ 34 (77)
T PRK00846 26 EQALTELSE 34 (77)
T ss_pred HHHHHHHHH
Confidence 333333333
No 347
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=41.03 E-value=3.3e+02 Score=26.03 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020385 35 EDKISQLNAEIAAYNEVRER 54 (327)
Q Consensus 35 ~~~~~~l~~~i~~~k~~~~~ 54 (327)
-..+..|+..|..+...++.
T Consensus 208 la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 35666677777777777666
No 348
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=40.88 E-value=2e+02 Score=23.56 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=20.0
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL 69 (327)
|+.+......+..++......++.|+.++.........+.+.+.++++.+..+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~ 74 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKAL 74 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444443333333333333333333
No 349
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=40.73 E-value=5.5e+02 Score=28.51 Aligned_cols=257 Identities=8% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hh
Q 020385 39 SQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK----------------FS 102 (327)
Q Consensus 39 ~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~----------------l~ 102 (327)
..++++++.++.......+...+.=..--..-..+..++.....+...+..+-....++..+ +.
T Consensus 26 ~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~ 105 (1109)
T PRK10929 26 KQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTD 105 (1109)
T ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHH
Q ss_pred hhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q 020385 103 QTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEV------------YQKTLKK 170 (327)
Q Consensus 103 ~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~------------~~~~e~e 170 (327)
++...+.........++....+--+++......+...-.......++. ++....+.. ...++.+
T Consensus 106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l----~~i~~~L~~~~~~~~~l~~a~~~~lqae 181 (1109)
T PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQL----NEIERRLQTLGTPNTPLAQAQLTALQAE 181 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHH----HHHHHHHhCCCCCCCcccHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020385 171 MSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFEN 250 (327)
Q Consensus 171 l~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~ 250 (327)
...+...+...+.++..... ...=.+.+.+- +..++..++..++.++..++...........+......+
T Consensus 182 ~~~l~~~~~~l~~~l~s~~~---~~~L~~~q~dl-------~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~ 251 (1109)
T PRK10929 182 SAALKALVDELELAQLSANN---RQELARLRSEL-------AKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAE 251 (1109)
T ss_pred HHHHHHHHHHHHHHHhccHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 020385 251 VKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 309 (327)
Q Consensus 251 ~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~ 309 (327)
-.........+.-..++++.........--..+..-.....+-...+...+..+...+.
T Consensus 252 ~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~ 310 (1109)
T PRK10929 252 QSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQ 310 (1109)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 350
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.50 E-value=4e+02 Score=26.83 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=12.5
Q ss_pred HHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385 98 DEKFSQTEFDLVQSVQQNADLRSKIVQ 124 (327)
Q Consensus 98 ~~~l~~~~~~i~~~~~e~~~L~s~iv~ 124 (327)
..+|.++.-.|..-..+|..+.+++++
T Consensus 379 ds~Lk~leIalEqkkEec~kme~qLkk 405 (654)
T KOG4809|consen 379 DSKLKSLEIALEQKKEECSKMEAQLKK 405 (654)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555444443
No 351
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.34 E-value=2.3e+02 Score=24.13 Aligned_cols=8 Identities=0% Similarity=0.264 Sum_probs=3.2
Q ss_pred hHHHHHHh
Q 020385 17 LRPIAEDL 24 (327)
Q Consensus 17 ~~~l~~~~ 24 (327)
|+++..+.
T Consensus 68 F~ELIRQV 75 (189)
T PF10211_consen 68 FDELIRQV 75 (189)
T ss_pred HHHHHHHH
Confidence 34444333
No 352
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.19 E-value=1.4e+02 Score=29.40 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020385 35 EDKISQLNAEIAAYN 49 (327)
Q Consensus 35 ~~~~~~l~~~i~~~k 49 (327)
+....+|+.+|+.++
T Consensus 75 Q~kasELEKqLaaLr 89 (475)
T PRK13729 75 QVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 353
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.81 E-value=1.4e+02 Score=26.82 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 020385 28 DEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ 74 (327)
Q Consensus 28 ~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~ 74 (327)
..+++-....+.+|+.++............++..++++|-.|-.+++
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444455555555555554444
No 354
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=39.76 E-value=95 Score=20.44 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020385 59 VQEVDAKVKELRQTIQD 75 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~ 75 (327)
+..+..++..|...|..
T Consensus 34 ~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 34 VQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444333333
No 355
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.36 E-value=1.7e+02 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020385 65 KVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 65 ~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
+++.|.-.+.+++.....+..++
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 33334333333333333333333
No 356
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=38.83 E-value=2.3e+02 Score=23.58 Aligned_cols=33 Identities=6% Similarity=0.231 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385 87 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 87 ~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
......+...+..+|..++..+..+-.+++.|.
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555553
No 357
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.15 E-value=3.2e+02 Score=25.08 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 020385 253 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 291 (327)
Q Consensus 253 ~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e 291 (327)
.+.+.+..++...+++-++++.++..++.+|..+++.+.
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777778888889999999998887664
No 358
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.09 E-value=1.9e+02 Score=22.44 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 94 TGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 94 ~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
+.....+|..+...|..+..++.++
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 359
>PLN02320 seryl-tRNA synthetase
Probab=38.03 E-value=3.6e+02 Score=26.98 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=9.5
Q ss_pred cccchhhhhhhchhhhHHHH
Q 020385 2 LLFPFLNLRDTKMNLLRPIA 21 (327)
Q Consensus 2 a~INf~~Free~~~~~~~l~ 21 (327)
|.+.|-.+|+..-.+...+.
T Consensus 65 ~mlD~k~ir~n~~~v~~~l~ 84 (502)
T PLN02320 65 AAIDFKWIRDNKEAVAINIR 84 (502)
T ss_pred cccCHHHHHhCHHHHHHHHH
Confidence 34555556654433433333
No 360
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=37.93 E-value=20 Score=28.34 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020385 291 AAKLQELASKAEEIVEKFQ 309 (327)
Q Consensus 291 e~e~~~~~~~~~~L~~~~~ 309 (327)
..++..+...+..|.....
T Consensus 106 ~~~~~~l~~~~~~lk~~~~ 124 (131)
T PF05103_consen 106 RAEAERLREEIEELKRQAE 124 (131)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 361
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=37.92 E-value=3.8e+02 Score=25.84 Aligned_cols=119 Identities=12% Similarity=0.129 Sum_probs=57.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPL--VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE----K 93 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~--~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~----~ 93 (327)
...-..-+..++..+..+....+..+..++....-..+. ..-....+.++...+............++..... -
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALP 248 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccch
Confidence 334455666677777777777777777777755433221 1111123333333333332222221111110000 0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhchh-hhhcCHHH--HHHHHHHHHH
Q 020385 94 TGALDEKFSQTEFDLVQSVQQNADLRS-KIVQSPEK--LQRTLEEKKS 138 (327)
Q Consensus 94 ~~~l~~~l~~~~~~i~~~~~e~~~L~s-~iv~spe~--lk~~le~l~~ 138 (327)
...-..-+..+...+..+..+...|.. |-..+|.- ++..+..++.
T Consensus 249 ~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~ 296 (444)
T TIGR03017 249 EVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKS 296 (444)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 000111244566666677777777644 66677766 6666666666
No 362
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=37.88 E-value=3.8e+02 Score=25.83 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 020385 223 VEQLDELQQQLEKERNLKSE 242 (327)
Q Consensus 223 ~~~l~~~l~~~~e~~~~~~~ 242 (327)
...+++.++....-+..+..
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~ 363 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQ 363 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 363
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.67 E-value=1.9e+02 Score=26.02 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 60 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 103 (327)
Q Consensus 60 ~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~ 103 (327)
-+++..+..|+++|..|+...+.+.-+++.++.+-..+...|..
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666666666555554
No 364
>PRK11415 hypothetical protein; Provisional
Probab=37.36 E-value=1.5e+02 Score=21.10 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=18.1
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
.|.++.............+..+...|..+|..+...
T Consensus 4 e~~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~ 39 (74)
T PRK11415 4 EYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGS 39 (74)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444455555555555555555555443
No 365
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.19 E-value=2.1e+02 Score=22.77 Aligned_cols=6 Identities=0% Similarity=0.219 Sum_probs=2.1
Q ss_pred HHHHHH
Q 020385 261 DLEARQ 266 (327)
Q Consensus 261 el~~~~ 266 (327)
+.....
T Consensus 90 eV~~v~ 95 (126)
T PF07889_consen 90 EVTEVR 95 (126)
T ss_pred HHHHHH
Confidence 333333
No 366
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.10 E-value=4.1e+02 Score=26.04 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 020385 293 KLQELASKAEEIVEKF 308 (327)
Q Consensus 293 e~~~~~~~~~~L~~~~ 308 (327)
-..+++.-|..++.+.
T Consensus 496 slEkl~~Dyqairqen 511 (521)
T KOG1937|consen 496 SLEKLHQDYQAIRQEN 511 (521)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 367
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.37 E-value=1.4e+02 Score=20.50 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 020385 181 ILEQVNSAK 189 (327)
Q Consensus 181 ~~~el~~~~ 189 (327)
+..++.+.+
T Consensus 16 ~~eEL~kvk 24 (61)
T PF08826_consen 16 IQEELTKVK 24 (61)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333443333
No 368
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.90 E-value=3.2e+02 Score=25.06 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHH
Q 020385 56 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 129 (327)
Q Consensus 56 e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~l 129 (327)
+....+|......+.+.++.+...+..+++.+..-+. ++...|..+...++.+...+.++++.|..-+..|
T Consensus 121 e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 121 EADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIKQLV 191 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
No 369
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=35.47 E-value=2.4e+02 Score=22.76 Aligned_cols=92 Identities=13% Similarity=0.237 Sum_probs=32.5
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 96 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~ 96 (327)
|++|....+.-.+...........+...+..+..........+..+.....+|..++..+=..+..++..--.+..+...
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 44444444444555555555555555556555444344445666666666666666666666666666665555555555
Q ss_pred HHHHHhhhHHHH
Q 020385 97 LDEKFSQTEFDL 108 (327)
Q Consensus 97 l~~~l~~~~~~i 108 (327)
|..+++.+...+
T Consensus 112 L~~~le~l~~~l 123 (141)
T PF13874_consen 112 LRKRLEALEAQL 123 (141)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 370
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.36 E-value=1.2e+02 Score=19.39 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 280 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le 280 (327)
-+..++..++.+..+.+....+.+.+++++..+.
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 371
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.07 E-value=4.6e+02 Score=25.99 Aligned_cols=58 Identities=10% Similarity=0.224 Sum_probs=38.3
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 46 AAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 103 (327)
Q Consensus 46 ~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~ 103 (327)
++++.+.......+....-.++.+...+..|+..+......+..+|.+..+|..+|-.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLR 394 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILR 394 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666777777777777766777777777777777777666654
No 372
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.92 E-value=2.1e+02 Score=21.92 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020385 59 VQEVDAKVKELRQTIQDLNKH 79 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~ 79 (327)
+.++..++..+..++...+..
T Consensus 74 l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 74 LAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 373
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=34.70 E-value=1.9e+02 Score=21.54 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385 255 MESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELA 298 (327)
Q Consensus 255 ~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~ 298 (327)
+.....++......+-....+.+.++.........+..+....+
T Consensus 68 ~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~E 111 (123)
T PF02050_consen 68 LERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEERRE 111 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444445555666666655555555544443
No 374
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=34.54 E-value=2.9e+02 Score=23.57 Aligned_cols=76 Identities=8% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHH
Q 020385 230 QQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQE--LASKAEEIVEK 307 (327)
Q Consensus 230 l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~--~~~~~~~L~~~ 307 (327)
++....+...+.. .....+..+++-+.......+ +.+...-+..++..|+.++......+.. ....|.++.+.
T Consensus 45 ~~~~~~K~deLed----r~~se~KRLRsrR~~~AEn~r-rs~L~kv~~l~QARidRvK~HiDdkia~ePkFle~nQV~Gn 119 (228)
T PF06721_consen 45 AEKMNVKFDELED----RISSEQKRLRSRRINYAENNR-RSALEKVASLYQARIDRVKAHIDDKIADEPKFLEFNQVKGN 119 (228)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHhhch
Confidence 3333344444444 333344444444444444444 4444455666777777777666555544 45555555555
Q ss_pred HHH
Q 020385 308 FQQ 310 (327)
Q Consensus 308 ~~~ 310 (327)
+..
T Consensus 120 iKl 122 (228)
T PF06721_consen 120 IKL 122 (228)
T ss_pred HHH
Confidence 544
No 375
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.33 E-value=2.2e+02 Score=22.10 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDL 76 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l 76 (327)
+-..|+-+|..|+..+..+
T Consensus 37 EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 37 ENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555543
No 376
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.30 E-value=2.5e+02 Score=22.60 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=35.4
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020385 15 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE 55 (327)
Q Consensus 15 ~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~ 55 (327)
+.+..+..+++.+..+.+++...+..|+.+..++...+...
T Consensus 15 ~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tl 55 (140)
T KOG4098|consen 15 SSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETL 55 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45778889999999999999999999999999998876543
No 377
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.20 E-value=3.9e+02 Score=24.84 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK 100 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~ 100 (327)
.+..+++++..|+..+..++.....|..++..++.....+...
T Consensus 28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~ 70 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAK 70 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555554444443
No 378
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.15 E-value=3.3e+02 Score=24.04 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 020385 165 QKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDA 244 (327)
Q Consensus 165 ~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~ 244 (327)
..+.+++.+....++..-+.. .......+...-..|+..+.+.+.+..-+.+++..+....+.+.........+.+
T Consensus 18 d~~~~~i~n~~s~~D~f~q~~--r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieq-- 93 (246)
T KOG4657|consen 18 DICEKDIHNQRSKIDSFIQSP--RRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQ-- 93 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345555555555554443333 1111112222222456666666656666777777666665544444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 245 TRAFENVKLEMESKRQDLEARQKKVE 270 (327)
Q Consensus 245 ~~k~~~~~~e~~~~~~el~~~~~~~~ 270 (327)
.+.+++++++-++.-+.....+.+
T Consensus 94 --eik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 94 --EIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555444444
No 379
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=33.82 E-value=2.7e+02 Score=22.94 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH
Q 020385 87 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 138 (327)
Q Consensus 87 ~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~ 138 (327)
+...|.+......++..++..|......+..|+. -+.+.+.|+..|++++.
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~-~~~d~eeLk~~i~~lq~ 65 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK-SAKDNEELKKQIEELQA 65 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 3344555555556666666666666666666665 46777888888888877
No 380
>PRK10698 phage shock protein PspA; Provisional
Probab=33.10 E-value=3.4e+02 Score=23.82 Aligned_cols=71 Identities=8% Similarity=0.166 Sum_probs=32.1
Q ss_pred hhhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 6 FLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 79 (327)
Q Consensus 6 f~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~ 79 (327)
|-||+.=-...+..+....++=..- +.--+..++..+.+++.....--..-..+...+..+...+..+...
T Consensus 4 f~Rl~~ii~a~in~~ldkaEDP~k~---l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 4 FSRFADIVNANINALLEKAEDPQKL---VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHhHHHHHHHhhcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665555555555555543222 2222333334444444433333333444444444554444444443
No 381
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.88 E-value=5.1e+02 Score=25.81 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 83 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 83 l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
...++..+......+..++..+...+..+..++..|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444444444444443
No 382
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=31.88 E-value=3.6e+02 Score=23.80 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=47.0
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 120 SKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQA 180 (327)
Q Consensus 120 s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~ 180 (327)
++++.+-..|-..|+.++.....+..+-.-+ +.+....-.+...++.+..++..+..
T Consensus 26 ~~~it~D~eL~~kle~l~~~~~~y~~L~~~~----~~~~~~l~~l~q~q~~lg~~f~~~~~ 82 (229)
T PF06456_consen 26 SRAITVDDELDAKLELLRDTQRTYRGLLKHA----RAYQNRLQALSQTQKELGDFFAELGV 82 (229)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888889999999999888888888877 88888888899999999999998887
No 383
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=31.73 E-value=3.8e+02 Score=23.97 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 020385 38 ISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 117 (327)
Q Consensus 38 ~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~ 117 (327)
+..|+.=|++.-.++...+.-+.+.-..++.....|-....+...|..+...++..-.+|...|+-......++..-...
T Consensus 73 ~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~ 152 (254)
T KOG2196|consen 73 YKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDP 152 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666677777777777777777777777777777777777777666666665555555
Q ss_pred chhhh
Q 020385 118 LRSKI 122 (327)
Q Consensus 118 L~s~i 122 (327)
|....
T Consensus 153 lE~k~ 157 (254)
T KOG2196|consen 153 LETKL 157 (254)
T ss_pred HHHHH
Confidence 54433
No 384
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.29 E-value=2.9e+02 Score=22.58 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 020385 24 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ 74 (327)
Q Consensus 24 ~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~ 74 (327)
++.+......+....+.....|..++..+...+..++.-...+.+|+..+.
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666655666666666555555444444444444443333
No 385
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.91 E-value=5.8e+02 Score=25.87 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=14.1
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 14 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 14 ~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+..+|.+..........+...+.....+..++..++.
T Consensus 142 r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~ 178 (557)
T COG0497 142 RQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQE 178 (557)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333332233333333433333333333
No 386
>PHA03041 virion core protein; Provisional
Probab=30.85 E-value=2.4e+02 Score=22.97 Aligned_cols=53 Identities=8% Similarity=0.319 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhccccc
Q 020385 269 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPV 321 (327)
Q Consensus 269 ~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~~~ 321 (327)
++++..+++.++.++.+|+.....=|..|-..-..=..+|+.-|+.|.+++..
T Consensus 95 ~~ei~kE~esIKdeT~sLQ~es~~LV~DIs~AkdtTfdAiNaiM~dL~kkfQ~ 147 (153)
T PHA03041 95 IEEIIKELESIKDETSSLQNESDSLVDDISTAKDTTFDAINAIMKDLKKKFQL 147 (153)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhcc
Confidence 46677888888888888888888888888888888889999999999887653
No 387
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=30.52 E-value=3.9e+02 Score=23.80 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 020385 274 TEVDAITSKTKFVKE 288 (327)
Q Consensus 274 ~ei~~le~~i~~~~~ 288 (327)
.+...+.......+.
T Consensus 103 ~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 103 EEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344443333333
No 388
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=30.49 E-value=3.6e+02 Score=23.29 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH
Q 020385 93 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 138 (327)
Q Consensus 93 ~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~ 138 (327)
+..+|..+|.++...+..+......-...-...|.-++..++.|=.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 3445666666666666666666555422223334446666655544
No 389
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=30.37 E-value=3.6e+02 Score=23.33 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385 127 EKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTL--KKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND 204 (327)
Q Consensus 127 e~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e--~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~ 204 (327)
+.|...|..+......+......+-....++...+..+..++ ..+..++..+.++...+..... ....-
T Consensus 14 ~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~---~~a~~------ 84 (216)
T cd07627 14 DSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLE---RQALQ------ 84 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHH---HHHHH------
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 020385 205 DVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEAR-------QKKVEAVVTEVD 277 (327)
Q Consensus 205 ~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~-------~~~~~~~~~ei~ 277 (327)
-...+.+.-....+.-.-+...-..+..... .+.++...+..++..++.. ..++..+..+|.
T Consensus 85 -------e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~----~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~ 153 (216)
T cd07627 85 -------DVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQ----YWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELE 153 (216)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHhHhccccc
Q 020385 278 AITSKTKFVKESGAAKLQELASKAEEI-VEKFQQYTNSIGTLLPV 321 (327)
Q Consensus 278 ~le~~i~~~~~~~e~e~~~~~~~~~~L-~~~~~~Y~~~l~~~~~~ 321 (327)
.++......+..|+.=...+..+..++ ..-+..+++.|...++.
T Consensus 154 ~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~ 198 (216)
T cd07627 154 EAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLES 198 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 390
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.09 E-value=2.7e+02 Score=24.99 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q 020385 88 NKLKEKTGALDEKFS 102 (327)
Q Consensus 88 ~~lk~~~~~l~~~l~ 102 (327)
..|..++.+....++
T Consensus 277 ~qL~~k~~~~lk~~a 291 (305)
T KOG3990|consen 277 QQLQKKKEESLKAIA 291 (305)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 391
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=29.78 E-value=45 Score=34.17 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=12.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 284 KFVKESGAAKLQELASKAEEIVEKFQQYTN 313 (327)
Q Consensus 284 ~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~ 313 (327)
..+...|+.|+..+...|..-...++.|..
T Consensus 322 E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k 351 (619)
T PF03999_consen 322 EELLELHEEEIERLKEEYESRKPILELVEK 351 (619)
T ss_dssp -------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888888888888877777766644
No 392
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.68 E-value=3.8e+02 Score=23.40 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhHhcccccccc
Q 020385 302 EEIVEKFQQYTNSIGTLLPVTEI 324 (327)
Q Consensus 302 ~~L~~~~~~Y~~~l~~~~~~~~~ 324 (327)
..|...|..-+..|.+.|....|
T Consensus 135 ~~l~~Gv~mi~kql~~vL~k~GV 157 (211)
T PRK14160 135 EDLKKGIEMTVKQFKTSLEKLGV 157 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCC
Confidence 34566666666666666655444
No 393
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.44 E-value=1.7e+02 Score=20.39 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=19.7
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 020385 15 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY 48 (327)
Q Consensus 15 ~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~ 48 (327)
..+..+..+...+..++..+..++..|..++..+
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555556666666666666666666665555
No 394
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.29 E-value=4.5e+02 Score=24.06 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=43.7
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKL 90 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~l 90 (327)
.+.-|.....+...++..-..+|.+|..+|..++..--+++=---+.+=.+++-+.+|..|+...++....+..-
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 345566667777777777778888888888888876555543222223334444444444444444444444333
No 395
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=29.07 E-value=3.1e+02 Score=22.09 Aligned_cols=62 Identities=27% Similarity=0.408 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 57 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 57 ~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
|.+..+...+..+......+-+.--.+..++..++.........+..+.............+
T Consensus 27 ~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 27 PQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333344444444444444444444444444444444444
No 396
>PRK11415 hypothetical protein; Provisional
Probab=28.96 E-value=2.1e+02 Score=20.33 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=35.2
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 020385 53 ERELPLVQEVDAKVKELRQTIQDLNKHQV-SLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 53 ~~~e~~~~~l~~~~~eL~~~i~~l~~~q~-~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
....|.+..+..+-+.|..+|..+..... .-...+..+|.++-.|.++|...
T Consensus 13 k~~D~~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~ 65 (74)
T PRK11415 13 KNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKI 65 (74)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHH
Confidence 34567777777777777777777666533 23456777777777777777654
No 397
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=28.91 E-value=4.2e+02 Score=23.61 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 020385 92 EKTGALDEKFSQTEFDLVQS 111 (327)
Q Consensus 92 ~~~~~l~~~l~~~~~~i~~~ 111 (327)
.+..++...++.+...+.++
T Consensus 125 ~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 125 AKNHELDSELELLRQELAEL 144 (292)
T ss_pred hhhHHHHHHHHHHHHHHHhh
Confidence 33333333333333333333
No 398
>PF14992 TMCO5: TMCO5 family
Probab=28.65 E-value=4.6e+02 Score=23.99 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQ 179 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~ 179 (327)
+..+..-..++.++.+|....-.++
T Consensus 25 ~ki~~~E~~iq~Le~Eit~~~~~~~ 49 (280)
T PF14992_consen 25 QKIQEKEGAIQSLEREITKMDHIAD 49 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccC
Confidence 4444444444555555554444333
No 399
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.28 E-value=3.4e+02 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385 274 TEVDAITSKTKFVKESGAAKLQELA 298 (327)
Q Consensus 274 ~ei~~le~~i~~~~~~~e~e~~~~~ 298 (327)
.+|..++.........+++++..+.
T Consensus 58 ~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 58 KQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445444443
No 400
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=27.72 E-value=2.3e+02 Score=20.19 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=19.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020385 287 KESGAAKLQELASKAEEIVEKFQQYTNSI 315 (327)
Q Consensus 287 ~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l 315 (327)
.......+..+...|..|...+..+...|
T Consensus 75 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 75 SDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44555666667777777777777666655
No 401
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.68 E-value=2.5e+02 Score=25.05 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 25 TRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+++..++..+..++..++.....+..
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ 153 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLE 153 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 402
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.25 E-value=3.2e+02 Score=21.67 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 020385 264 ARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 316 (327)
Q Consensus 264 ~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~ 316 (327)
..+++++..+.+++.++.++.++=.....=+..+...|..|-.|+..=-+.|.
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~Ll 81 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEELL 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555556667777788888888888888888888888888888866555543
No 403
>PLN02678 seryl-tRNA synthetase
Probab=26.78 E-value=6.2e+02 Score=24.88 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 83 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 83 l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
+..+...++++...+..++..+...+..+-..+=++
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333444444444444444444444444444444444
No 404
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.68 E-value=6.4e+02 Score=25.01 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 139 IREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKS 190 (327)
Q Consensus 139 ~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~ 190 (327)
.++.+..++.++... .......+..+...|..+...-..+..+..++..
T Consensus 145 l~e~l~~f~~~v~~~---~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 145 LREQLDGFRRQVQDS---FGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666322 2223344455555555555555555554444433
No 405
>PRK11020 hypothetical protein; Provisional
Probab=26.28 E-value=3.2e+02 Score=21.35 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhHHHHHH
Q 020385 250 NVKLEMESKRQDLEARQKKVEAVV------------TEVDAITSKTKFVKESGAAKLQE 296 (327)
Q Consensus 250 ~~~~e~~~~~~el~~~~~~~~~~~------------~ei~~le~~i~~~~~~~e~e~~~ 296 (327)
.++.++..+...++..++++.+.. .+++.+..+|..++..-..++.+
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lsk 60 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSK 60 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 406
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=26.14 E-value=3.2e+02 Score=21.36 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=38.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 27 LDEQRSELED-KISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTT 86 (327)
Q Consensus 27 l~~~~~~l~~-~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~ 86 (327)
+..++..+.+ ++..++.++.+++.++-.+-..+.++=..++.|+.+-..+......|..+
T Consensus 4 ~l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~R 64 (120)
T PF10482_consen 4 LLNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543 78889999999998887776666666666666655555555554444444
No 407
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=25.95 E-value=3.7e+02 Score=22.06 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 63 DAKVKELRQTIQDLNKHQVSLRT-------TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 63 ~~~~~eL~~~i~~l~~~q~~l~~-------~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
.+++..++..|...|+....|.. +|...-.-.++...+-..+...+.++..+.+++
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~ 145 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERL 145 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444444 444444444444555555555555555555555
No 408
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.78 E-value=6.2e+02 Score=24.53 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhhcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHH
Q 020385 120 SKIVQSPEKLQRTLEEKKS----IREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQA-ILEQVNSAKSIEKD 194 (327)
Q Consensus 120 s~iv~spe~lk~~le~l~~----~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~-~~~el~~~~~~~~~ 194 (327)
..|...|+.++..+..-.- ....+-.+.........++.......+.+.++|....+.-++ ...-....+.+..+
T Consensus 5 k~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~ 84 (418)
T TIGR00414 5 KLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEE 84 (418)
T ss_pred HHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhchhhhhhHHHHHHHHHHHhHH
Q 020385 195 YKSLKARLNDDVVLDKSLEAKLIERQGKV 223 (327)
Q Consensus 195 ~~~l~~~l~~~~~~~k~l~~~~~e~~~~~ 223 (327)
++.+...+.. ++.++.+.-..+
T Consensus 85 ~~~~~~~~~~-------~~~~~~~~~~~l 106 (418)
T TIGR00414 85 LTELSAALKA-------LEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHhC
No 409
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=25.24 E-value=3.5e+02 Score=21.53 Aligned_cols=6 Identities=0% Similarity=-0.219 Sum_probs=2.1
Q ss_pred HHHhhH
Q 020385 286 VKESGA 291 (327)
Q Consensus 286 ~~~~~e 291 (327)
+....+
T Consensus 101 ~~~~L~ 106 (126)
T PF09403_consen 101 LLNKLD 106 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 410
>PRK14127 cell division protein GpsB; Provisional
Probab=25.22 E-value=2.4e+02 Score=21.83 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=17.3
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
++.+...++.+..++..|..++..|+.++..+...
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555555555555555554443
No 411
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=25.09 E-value=5.7e+02 Score=23.93 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=21.2
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 45 IAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEK 93 (327)
Q Consensus 45 i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~ 93 (327)
+.-++..+.+.+..+..-..++.++..++..+......|+.....+|+.
T Consensus 149 VDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~ 197 (405)
T KOG2010|consen 149 VDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEG 197 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444433
No 412
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.09 E-value=8.4e+02 Score=25.82 Aligned_cols=64 Identities=8% Similarity=-0.019 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 223 VEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG 290 (327)
Q Consensus 223 ~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~ 290 (327)
..++.-.++.+-...+.++. ++++.+.|-.-+.--+..++.++..++.-...++.-|..+..++
T Consensus 496 ~~rik~ev~eal~~~k~~q~----kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 496 TTRIKIEVEEALVNVKSLQF----KLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDL 559 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333334444444444444 56666666666666666666666666655566666666655533
No 413
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.03 E-value=3.8e+02 Score=26.50 Aligned_cols=10 Identities=40% Similarity=0.302 Sum_probs=3.7
Q ss_pred HHHHHHHhch
Q 020385 110 QSVQQNADLR 119 (327)
Q Consensus 110 ~~~~e~~~L~ 119 (327)
.+..++..|+
T Consensus 108 eLEaE~~~Lk 117 (475)
T PRK13729 108 KLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 414
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=24.68 E-value=8.1e+02 Score=25.51 Aligned_cols=142 Identities=13% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHH---HHHhHHHHHHHHHHH
Q 020385 156 EKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLI---ERQGKVEQLDELQQQ 232 (327)
Q Consensus 156 ~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~---e~~~~~~~l~~~l~~ 232 (327)
.+......-.....++..+...+..+......... .+...+..-.. |...+. .+...+..+......
T Consensus 169 ~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~---~l~~~~~~~~~-------l~~~~~~~~~~~~~~~~l~~~~~~ 238 (670)
T KOG0239|consen 169 LLDLALKESLKLESDLGDLVTELEHVTNSISELES---VLKSAQEERRV-------LADSLGNYADLRRNIKPLEGLEST 238 (670)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHH-------HHHHhhhhhhHHHhhhhhhhhhhH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHH
Q 020385 233 LEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA------AKLQELASKAEEIVE 306 (327)
Q Consensus 233 ~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e------~e~~~~~~~~~~L~~ 306 (327)
..+++..+.. .+..++.....+...+....+.+...+..+..+.+........+- .+.++++.....|.+
T Consensus 239 ~~~~i~~l~~----~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 239 IKKKIQALQQ----ELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred HHHHH
Q 020385 307 KFQQY 311 (327)
Q Consensus 307 ~~~~Y 311 (327)
-|..|
T Consensus 315 nIRV~ 319 (670)
T KOG0239|consen 315 NIRVF 319 (670)
T ss_pred CceEE
No 415
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.63 E-value=4.7e+02 Score=22.72 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=10.2
Q ss_pred CHHH-HHHHHHHHHH
Q 020385 125 SPEK-LQRTLEEKKS 138 (327)
Q Consensus 125 spe~-lk~~le~l~~ 138 (327)
+|.+ |...+.+|..
T Consensus 24 DP~~~l~q~irem~~ 38 (219)
T TIGR02977 24 DPEKMIRLIIQEMED 38 (219)
T ss_pred CHHHHHHHHHHHHHH
Confidence 6884 7777777776
No 416
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=24.50 E-value=5.2e+02 Score=23.24 Aligned_cols=6 Identities=17% Similarity=0.550 Sum_probs=3.2
Q ss_pred chhhhh
Q 020385 5 PFLNLR 10 (327)
Q Consensus 5 Nf~~Fr 10 (327)
||.||-
T Consensus 162 nylrfa 167 (311)
T PF04642_consen 162 NYLRFA 167 (311)
T ss_pred hhhhhH
Confidence 555554
No 417
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.39 E-value=6.6e+02 Score=24.39 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 020385 86 TLNKLKEKTGALDEKFSQTEFDLVQSV 112 (327)
Q Consensus 86 ~~~~lk~~~~~l~~~l~~~~~~i~~~~ 112 (327)
+...++.+...+..++..+...+...-
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 74 EVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333333333
No 418
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.26 E-value=6e+02 Score=23.87 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHhc
Q 020385 47 AYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT--------EFDLVQSVQQNADL 118 (327)
Q Consensus 47 ~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~--------~~~i~~~~~e~~~L 118 (327)
++..+-.+-..++++++.....+.+++.++.+-|..-...+..-+..-..+...+... ...+..+..++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred hhhhhc
Q 020385 119 RSKIVQ 124 (327)
Q Consensus 119 ~s~iv~ 124 (327)
+..+..
T Consensus 81 ~~~l~D 86 (330)
T PF07851_consen 81 RCQLFD 86 (330)
T ss_pred HhhHHH
No 419
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=24.19 E-value=4.6e+02 Score=22.46 Aligned_cols=110 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020385 157 KTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKE 236 (327)
Q Consensus 157 l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~ 236 (327)
|.-....+..++.+|......+++....+...+. .......-.......+..|..-+......+.....-....+.+
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~---na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~e 138 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQA---NAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQE 138 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 237 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV 273 (327)
Q Consensus 237 ~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~ 273 (327)
+..... -+...+..++.+..++..-...++..+
T Consensus 139 l~eK~q----LLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 139 LAEKTQ----LLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 420
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=24.13 E-value=5.7e+02 Score=23.59 Aligned_cols=127 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020385 169 KKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAF 248 (327)
Q Consensus 169 ~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~ 248 (327)
+|-+-+..+|......+...-. +.... |.....+ +..-+....++-..+..+++.+-.+...... .+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~---~~~~~---Ldklh~e---it~~LEkI~SREK~lNnqL~~l~q~fr~a~~----~l 289 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVG---NVGPY---LDKLHKE---ITKALEKIASREKSLNNQLASLMQKFRRATD----TL 289 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc---chhHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHH
Q 020385 249 ENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF--VKESGAAKLQELASKAEEIVEKF 308 (327)
Q Consensus 249 ~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~--~~~~~e~e~~~~~~~~~~L~~~~ 308 (327)
..++..+.........+-+.++++..++..++.+|.. -..+--+-+.+|....+.|...+
T Consensus 290 se~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et 351 (384)
T KOG0972|consen 290 SELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEET 351 (384)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHH
No 421
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.84 E-value=6.8e+02 Score=24.37 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=14.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+......+..++..+...+..+...+..+..
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444444444444444444444444443
No 422
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.52 E-value=4.6e+02 Score=22.30 Aligned_cols=19 Identities=5% Similarity=0.184 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 020385 289 SGAAKLQELASKAEEIVEK 307 (327)
Q Consensus 289 ~~e~e~~~~~~~~~~L~~~ 307 (327)
.+..++..+...-..|.+.
T Consensus 167 ~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 423
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=23.51 E-value=7.5e+02 Score=24.74 Aligned_cols=283 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhhchhhhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH---------
Q 020385 10 RDTKMNLLRPIAEDL-TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH--------- 79 (327)
Q Consensus 10 ree~~~~~~~l~~~~-e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~--------- 79 (327)
|+.-++.+..-.... ..+...+..+++++..+-.+...-=. ..+-..+..+++.+-.|+..++.-...
T Consensus 147 re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l--~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lr 224 (531)
T PF15450_consen 147 REDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFL--KREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLR 224 (531)
T ss_pred HHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH-------
Q 020385 80 ----------QVSLRTTLNKLKEKTG----ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS------- 138 (327)
Q Consensus 80 ----------q~~l~~~~~~lk~~~~----~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~------- 138 (327)
|....+++..++.... ....+-..+...+..+..-+..|...+.....+|.+.+..=..
T Consensus 225 eElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~ 304 (531)
T PF15450_consen 225 EELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEK 304 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHH
Q 020385 139 -IREEARDAEKLAMQSFQEKTTTLEVYQKT-LKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKL 216 (327)
Q Consensus 139 -~~~~l~~~e~~~~~~~~~l~~~~e~~~~~-e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~ 216 (327)
....+..+...+-.....+......-.+. ..++..+....+.+...+..... .+++|.+++..-++- |..+-
T Consensus 305 ~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~---~lkDLd~~~~aLs~r---ld~qE 378 (531)
T PF15450_consen 305 LEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMR---QLKDLDDHILALSWR---LDLQE 378 (531)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh---hhHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----
Q 020385 217 IERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA----- 291 (327)
Q Consensus 217 ~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e----- 291 (327)
..+..++..+.........+.-.-...++.... ..+..++.+++.+-..|..+..++..++.++.
T Consensus 379 qtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~----------~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdt 448 (531)
T PF15450_consen 379 QTLNLRLSEAKNEWESDERKSLEKLDQWQNEME----------KHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDT 448 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccH
Q ss_pred ------HHHHHHHHHHHHHHHHHHH
Q 020385 292 ------AKLQELASKAEEIVEKFQQ 310 (327)
Q Consensus 292 ------~e~~~~~~~~~~L~~~~~~ 310 (327)
.+|..+..++..|.+.+.+
T Consensus 449 E~k~R~~eV~~vRqELa~lLssvQ~ 473 (531)
T PF15450_consen 449 EGKAREREVGAVRQELATLLSSVQL 473 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 424
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=22.97 E-value=1.2e+02 Score=25.15 Aligned_cols=29 Identities=7% Similarity=0.138 Sum_probs=17.4
Q ss_pred ccchhhhhhh-c--hhhhHHHHHHhhhHHHHH
Q 020385 3 LFPFLNLRDT-K--MNLLRPIAEDLTRLDEQR 31 (327)
Q Consensus 3 ~INf~~Free-~--~~~~~~l~~~~e~l~~~~ 31 (327)
=|||+.||.- + -++++.+...++++..-.
T Consensus 50 ~IDwa~Yk~~l~~~~~lVD~feK~y~s~kip~ 81 (161)
T PF05873_consen 50 KIDWAHYKSVLKENPGLVDEFEKQYESFKIPY 81 (161)
T ss_dssp ---HHHHHHC-S-STTHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHhhhhHHHHHHHHHHHhccCCCC
Confidence 3899999985 3 568899998888887543
No 425
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=22.52 E-value=7.2e+02 Score=24.11 Aligned_cols=39 Identities=31% Similarity=0.375 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 80 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 80 q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
|-.|..+...++.....|..+|.+++..+..+..-..+|
T Consensus 346 Q~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rL 384 (421)
T KOG2685|consen 346 QYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARL 384 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666555555554444443333
No 426
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=22.34 E-value=2.1e+02 Score=28.68 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccccccccC
Q 020385 294 LQELASKAEEIVEKFQQYTNSIGTLLPVTEIES 326 (327)
Q Consensus 294 ~~~~~~~~~~L~~~~~~Y~~~l~~~~~~~~~~~ 326 (327)
+..|...|..|++.++.|...|.++|....||-
T Consensus 538 Lnsiqk~YesLv~kv~~yt~nLk~~inNcqiEK 570 (574)
T PF07462_consen 538 LNSIQKEYESLVNKVNTYTENLKKFINNCQIEK 570 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 578999999999999999999999998877763
No 427
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=22.16 E-value=4.4e+02 Score=21.55 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=24.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHhcc
Q 020385 288 ESGAAKLQELASKAEEIVEKFQQYTNSIGTL 318 (327)
Q Consensus 288 ~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~ 318 (327)
......+..+...|..|.+.+......+...
T Consensus 182 ~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 182 EEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888899999999999998888777653
No 428
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=8.1e+02 Score=24.50 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhcc
Q 020385 275 EVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTL 318 (327)
Q Consensus 275 ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~ 318 (327)
.....++....++..|.+...+...-...|...+..|+..+...
T Consensus 379 ~~e~teqkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~ 422 (613)
T KOG0992|consen 379 YSELTEQKLEELKVQFTAKQEKHAETIKELEIELEEYRRAILRN 422 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34456667888888888888888888888888999998887643
No 429
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=21.53 E-value=4.4e+02 Score=21.28 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385 91 KEKTGALDEKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 91 k~~~~~l~~~l~~~~~~i~~~~~e~~~L~s 120 (327)
..........+......|..+..|++.|+.
T Consensus 67 r~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 67 RQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 333444445555556666666666666654
No 430
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.38 E-value=3.4e+02 Score=20.75 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 44 EIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK 89 (327)
Q Consensus 44 ~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~ 89 (327)
.+.+++........++..++.++..|..+|..++..-..+.+..+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.35 E-value=1e+03 Score=25.34 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020385 223 VEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 302 (327)
Q Consensus 223 ~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~ 302 (327)
+.+.+.-+..-....+.+.. .+.+...+++....++.....+++.... .++.+...+.......+.++..++.
T Consensus 504 i~~A~~~~~~~~~~~~~li~----~l~~~~~~~e~~~~~~~~~~~e~~~~~~---~l~~~~~~l~~~~~~~~~~~~~~a~ 576 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIA----SLEELERELEQKAEEAEALLKEAEKLKE---ELEEKKEKLQEEEDKLLEEAEKEAQ 576 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHhccc
Q 020385 303 EIVEKFQQYTNSIGTLL 319 (327)
Q Consensus 303 ~L~~~~~~Y~~~l~~~~ 319 (327)
.+......-...+...+
T Consensus 577 ~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 577 QAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHH
No 432
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.07 E-value=4e+02 Score=20.64 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 65 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 96 (327)
Q Consensus 65 ~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~ 96 (327)
...-+..++..++.....+...+..+....+.
T Consensus 87 A~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 87 AIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 433
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.95 E-value=3.9e+02 Score=20.52 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 020385 162 EVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKA 200 (327)
Q Consensus 162 e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~ 200 (327)
..+..+..++..+...+..+...+..+..+...+..+.+
T Consensus 6 ~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00890 6 AQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555556666666666666666666665556666653
No 434
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.80 E-value=1.1e+03 Score=25.80 Aligned_cols=43 Identities=12% Similarity=0.029 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhccccc
Q 020385 279 ITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPV 321 (327)
Q Consensus 279 le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~~~ 321 (327)
+...+..+.+.....+.++...++....++..|...|.+.++.
T Consensus 716 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1041)
T KOG0243|consen 716 LSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFES 758 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHh
Confidence 3333444444555555555555555555555555555555443
No 435
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.76 E-value=4.5e+02 Score=21.09 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 020385 86 TLNKLKEKTGAL 97 (327)
Q Consensus 86 ~~~~lk~~~~~l 97 (327)
+++.|+.+..++
T Consensus 89 qv~~L~~e~s~~ 100 (135)
T KOG4196|consen 89 QVEKLKEENSRL 100 (135)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 436
>PHA03395 p10 fibrous body protein; Provisional
Probab=20.33 E-value=3.7e+02 Score=19.94 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385 163 VYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND 204 (327)
Q Consensus 163 ~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~ 204 (327)
.|..+..+|......+..++..+.....-..++..+.+.|+.
T Consensus 5 ILl~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLda 46 (87)
T PHA03395 5 ILLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDA 46 (87)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 345555566666666666666555555433333444444444
No 437
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.27 E-value=6.5e+02 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 020385 91 KEKTGALDEKFSQTEFDLVQSVQQNA 116 (327)
Q Consensus 91 k~~~~~l~~~l~~~~~~i~~~~~e~~ 116 (327)
......+..++..+...+..+..++.
T Consensus 381 ~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 381 KEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443333
No 438
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.18 E-value=4.2e+02 Score=20.51 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 020385 34 LEDKISQLNAEIAA 47 (327)
Q Consensus 34 l~~~~~~l~~~i~~ 47 (327)
+++.+..++.+|..
T Consensus 6 iFd~v~~le~~l~~ 19 (114)
T COG4467 6 IFDQVDNLEEQLGV 19 (114)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 439
>PRK11519 tyrosine kinase; Provisional
Probab=20.10 E-value=1e+03 Score=24.90 Aligned_cols=140 Identities=11% Similarity=0.120 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 25 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVK--ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 102 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~--eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~ 102 (327)
..+..+.........-|..++..++.+...-+..++..+..+. ++..+...+-.....+..++..+......+.....
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~ 335 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYT 335 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred hhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 103 QTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTL 168 (327)
Q Consensus 103 ~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e 168 (327)
...=.+..+......|+.+ -+.++..+..+.....++..+++.+.-...-+...+..+..+.
T Consensus 336 ~~hP~v~~l~~~~~~L~~~----~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 336 KEHPAYRTLLEKRKALEDE----KAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred ccCcHHHHHHHHHHHHHHH----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 440
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.04 E-value=5.2e+02 Score=21.58 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 020385 274 TEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYT 312 (327)
Q Consensus 274 ~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~ 312 (327)
.+....+.+|..+......++..+......++..+-.|.
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555554
Done!