Query 020385
Match_columns 327
No_of_seqs 126 out of 169
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 16:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.3 5.8E-07 2E-11 79.3 42.4 99 20-118 4-102 (284)
2 1c1g_A Tropomyosin; contractIl 99.2 1.7E-06 5.7E-11 76.3 41.9 24 292-315 258-281 (284)
3 2ve7_C Kinetochore protein NUF 98.4 1.1E-07 3.7E-12 84.0 2.7 68 2-69 128-195 (250)
4 3na7_A HP0958; flagellar bioge 97.6 0.035 1.2E-06 48.8 23.7 176 108-308 13-188 (256)
5 2v71_A Nuclear distribution pr 97.3 0.05 1.7E-06 45.2 20.4 157 28-204 16-172 (189)
6 3na7_A HP0958; flagellar bioge 97.1 0.12 4.2E-06 45.2 23.0 22 276-297 134-155 (256)
7 3vkg_A Dynein heavy chain, cyt 96.5 1.8 6.3E-05 50.4 29.8 34 17-50 1897-1931(3245)
8 2dfs_A Myosin-5A; myosin-V, in 95.3 1 3.5E-05 47.5 19.0 57 212-268 989-1045(1080)
9 3vkg_A Dynein heavy chain, cyt 95.2 6.5 0.00022 46.1 28.5 58 212-273 2019-2076(3245)
10 3s4r_A Vimentin; alpha-helix, 95.0 0.73 2.5E-05 33.7 12.5 74 14-89 8-81 (93)
11 2ocy_A RAB guanine nucleotide 94.9 1.2 4E-05 35.7 15.0 112 13-124 35-147 (154)
12 3o0z_A RHO-associated protein 94.6 1.4 4.9E-05 35.6 22.3 56 247-302 98-153 (168)
13 3ol1_A Vimentin; structural ge 94.5 1.2 4E-05 34.1 15.4 98 166-298 17-114 (119)
14 3ol1_A Vimentin; structural ge 94.5 1.2 4E-05 34.1 14.2 14 226-239 88-101 (119)
15 3u1c_A Tropomyosin alpha-1 cha 94.4 1.1 3.7E-05 33.3 13.7 64 59-122 32-95 (101)
16 3tnu_B Keratin, type II cytosk 94.4 1.3 4.6E-05 34.3 13.3 72 212-283 48-119 (129)
17 3tnu_A Keratin, type I cytoske 94.4 1.4 4.7E-05 34.3 13.6 72 212-283 50-121 (131)
18 2dfs_A Myosin-5A; myosin-V, in 94.4 2 6.9E-05 45.3 18.4 29 94-122 923-951 (1080)
19 3o0z_A RHO-associated protein 94.1 1.9 6.6E-05 34.9 20.5 100 21-120 12-111 (168)
20 3u59_A Tropomyosin beta chain; 93.9 1.4 4.9E-05 32.6 13.7 64 59-122 32-95 (101)
21 2v71_A Nuclear distribution pr 93.7 2.5 8.6E-05 35.0 22.6 35 167-204 47-81 (189)
22 2jee_A YIIU; FTSZ, septum, coi 93.5 1.3 4.5E-05 31.3 10.3 66 25-104 9-74 (81)
23 3tnu_B Keratin, type II cytosk 92.8 0.96 3.3E-05 35.1 9.8 25 155-179 103-127 (129)
24 3tnu_A Keratin, type I cytoske 92.5 1.5 5E-05 34.2 10.6 25 155-179 105-129 (131)
25 2jee_A YIIU; FTSZ, septum, coi 92.5 2 6.9E-05 30.3 10.8 39 81-119 23-61 (81)
26 2efr_A General control protein 92.2 3.7 0.00013 32.8 24.1 110 194-311 43-152 (155)
27 2efr_A General control protein 92.2 3.7 0.00013 32.8 23.4 99 21-119 6-104 (155)
28 3u1c_A Tropomyosin alpha-1 cha 92.0 2.8 9.7E-05 31.0 15.1 23 168-190 8-30 (101)
29 2e7s_A RAB guanine nucleotide 91.7 0.7 2.4E-05 36.0 7.6 108 13-120 23-131 (135)
30 3oja_B Anopheles plasmodium-re 91.3 1.7 5.8E-05 42.4 11.9 27 92-118 463-489 (597)
31 3oja_B Anopheles plasmodium-re 90.9 6.3 0.00021 38.3 15.6 21 25-45 466-486 (597)
32 2eqb_B RAB guanine nucleotide 90.7 3.7 0.00013 30.0 13.6 87 17-103 7-94 (97)
33 2fxo_A Myosin heavy chain, car 89.9 5.5 0.00019 30.7 15.5 89 30-118 14-102 (129)
34 3u59_A Tropomyosin beta chain; 89.0 5.4 0.00019 29.3 15.2 12 274-285 86-97 (101)
35 3q8t_A Beclin-1; autophagy, AT 88.7 5.6 0.00019 29.1 13.6 62 59-120 34-95 (96)
36 3ghg_A Fibrinogen alpha chain; 88.4 13 0.00043 35.5 14.4 31 146-176 58-88 (562)
37 2b9c_A Striated-muscle alpha t 88.3 7.5 0.00026 30.8 11.3 66 85-150 10-75 (147)
38 3jsv_C NF-kappa-B essential mo 87.7 5.7 0.0002 28.7 9.1 85 25-113 5-89 (94)
39 3swk_A Vimentin; cytoskeleton, 86.6 7 0.00024 27.9 10.1 14 251-264 47-60 (86)
40 3a7p_A Autophagy protein 16; c 84.9 13 0.00044 29.4 10.9 61 58-118 69-129 (152)
41 2oto_A M protein; helical coil 84.4 14 0.00047 29.4 16.9 49 32-80 32-80 (155)
42 2zqm_A Prefoldin beta subunit 84.4 11 0.00037 28.1 11.4 45 155-199 6-50 (117)
43 3i00_A HIP-I, huntingtin-inter 84.0 12 0.00042 28.4 10.8 44 218-261 19-62 (120)
44 1ic2_A Tropomyosin alpha chain 83.8 9.2 0.00031 26.8 11.1 45 59-103 29-73 (81)
45 3swk_A Vimentin; cytoskeleton, 83.2 10 0.00035 27.0 10.8 58 17-74 2-59 (86)
46 3qh9_A Liprin-beta-2; coiled-c 82.5 10 0.00035 26.5 9.5 63 62-124 17-79 (81)
47 1ci6_A Transcription factor AT 80.9 5.8 0.0002 26.5 6.4 44 7-50 15-58 (63)
48 2e7s_A RAB guanine nucleotide 80.7 10 0.00035 29.4 8.5 33 234-266 84-116 (135)
49 2v4h_A NF-kappa-B essential mo 80.6 15 0.00053 27.2 12.0 81 16-107 25-105 (110)
50 2v4h_A NF-kappa-B essential mo 80.4 16 0.00053 27.2 11.6 40 79-118 70-109 (110)
51 3cvf_A Homer-3, homer protein 80.3 13 0.00043 26.1 9.8 60 59-118 15-74 (79)
52 1fxk_A Prefoldin; archaeal pro 79.6 16 0.00053 26.7 11.9 43 157-199 3-45 (107)
53 1x79_B RAB GTPase binding effe 79.6 17 0.00059 27.2 11.8 98 16-119 7-104 (112)
54 2ocy_A RAB guanine nucleotide 79.5 22 0.00074 28.3 19.8 45 233-277 95-139 (154)
55 2b9c_A Striated-muscle alpha t 79.0 22 0.00075 28.0 12.9 25 214-238 73-97 (147)
56 1ic2_A Tropomyosin alpha chain 77.9 15 0.00052 25.6 10.4 63 20-82 4-66 (81)
57 3a2a_A Voltage-gated hydrogen 77.1 6.4 0.00022 25.3 5.2 39 84-122 10-48 (58)
58 3cvf_A Homer-3, homer protein 76.9 11 0.00039 26.3 7.0 57 83-139 11-67 (79)
59 3i00_A HIP-I, huntingtin-inter 76.7 22 0.00076 27.0 11.2 65 221-285 15-79 (120)
60 4dzn_A Coiled-coil peptide CC- 76.5 6.6 0.00023 21.5 4.4 28 86-113 3-30 (33)
61 3cve_A Homer protein homolog 1 76.1 16 0.00056 25.0 9.7 57 61-117 11-67 (72)
62 3vmx_A Voltage-gated hydrogen 75.8 9.1 0.00031 24.0 5.5 38 85-122 4-41 (48)
63 3s4r_A Vimentin; alpha-helix, 75.3 20 0.0007 25.8 11.1 31 48-78 14-44 (93)
64 3mq7_A Bone marrow stromal ant 75.0 24 0.00082 26.5 11.9 35 155-189 32-66 (121)
65 3bas_A Myosin heavy chain, str 74.5 21 0.00071 25.5 11.3 42 38-79 16-57 (89)
66 3s84_A Apolipoprotein A-IV; fo 74.5 43 0.0015 29.2 25.5 41 61-101 41-82 (273)
67 1x8y_A Lamin A/C; structural p 74.2 21 0.00071 25.3 8.5 28 154-181 55-82 (86)
68 3mq7_A Bone marrow stromal ant 74.1 25 0.00086 26.3 12.7 31 247-277 72-102 (121)
69 3cve_A Homer protein homolog 1 72.3 21 0.00071 24.5 8.8 58 83-140 5-62 (72)
70 2v66_B Nuclear distribution pr 72.1 28 0.00097 26.0 15.4 46 140-185 55-100 (111)
71 3ra3_B P2F; coiled coil domain 70.0 3.8 0.00013 21.7 2.4 25 87-111 2-26 (28)
72 3nmd_A CGMP dependent protein 69.4 15 0.00052 25.1 6.0 21 100-120 48-68 (72)
73 1fxk_A Prefoldin; archaeal pro 69.2 30 0.001 25.1 11.5 36 15-50 8-43 (107)
74 4h22_A Leucine-rich repeat fli 68.8 32 0.0011 25.3 9.9 46 27-72 14-59 (103)
75 1t2k_D Cyclic-AMP-dependent tr 68.0 18 0.00063 23.7 6.2 42 8-49 15-56 (61)
76 3nmd_A CGMP dependent protein 66.7 28 0.00096 23.8 7.6 33 58-90 34-66 (72)
77 3cl3_D NF-kappa-B essential mo 66.5 21 0.00071 27.2 6.8 88 212-306 7-97 (130)
78 4fla_A Regulation of nuclear P 65.5 49 0.0017 26.2 10.0 69 59-127 81-149 (152)
79 2q6q_A Spindle POLE BODY compo 64.5 29 0.001 23.3 8.2 24 25-48 6-29 (74)
80 3a7p_A Autophagy protein 16; c 63.8 52 0.0018 25.9 11.7 25 28-52 67-91 (152)
81 1gd2_E Transcription factor PA 63.4 16 0.00053 25.0 5.2 31 9-39 23-53 (70)
82 3qh9_A Liprin-beta-2; coiled-c 62.5 37 0.0012 23.7 9.3 54 166-229 23-76 (81)
83 2zqm_A Prefoldin beta subunit 61.9 45 0.0015 24.5 12.5 32 19-50 10-41 (117)
84 1jnm_A Proto-oncogene C-JUN; B 61.6 12 0.00043 24.7 4.4 42 8-49 15-56 (62)
85 4fla_A Regulation of nuclear P 60.7 60 0.0021 25.6 16.2 111 172-286 25-143 (152)
86 1x79_B RAB GTPase binding effe 60.3 51 0.0017 24.6 13.0 51 216-266 47-97 (112)
87 3efg_A Protein SLYX homolog; x 59.8 24 0.00082 24.6 5.8 49 26-74 11-59 (78)
88 3oja_A Leucine-rich immune mol 59.1 1.2E+02 0.004 28.4 13.5 21 29-49 367-387 (487)
89 3l4q_C Phosphatidylinositol 3- 58.2 72 0.0025 25.7 15.1 61 58-118 90-150 (170)
90 1gk6_A Vimentin; intermediate 58.1 29 0.00099 22.7 5.7 44 34-77 5-48 (59)
91 3htk_A Structural maintenance 57.8 35 0.0012 22.0 7.5 40 73-112 14-53 (60)
92 1deq_A Fibrinogen (alpha chain 56.7 1.2E+02 0.004 27.7 14.1 50 236-285 110-159 (390)
93 2v66_B Nuclear distribution pr 55.8 61 0.0021 24.2 15.2 13 212-224 15-27 (111)
94 2xv5_A Lamin-A/C; structural p 55.5 47 0.0016 22.8 7.9 46 31-76 7-52 (74)
95 3mq9_A Bone marrow stromal ant 53.9 1.4E+02 0.0047 27.7 15.4 19 213-231 403-421 (471)
96 3jsv_C NF-kappa-B essential mo 51.2 66 0.0022 23.2 9.9 62 58-119 17-88 (94)
97 3mov_A Lamin-B1; LMNB1, B-type 51.1 66 0.0023 23.2 8.3 65 37-104 20-84 (95)
98 2pjw_H Uncharacterized protein 50.9 64 0.0022 23.0 7.2 54 266-319 34-87 (88)
99 3iv1_A Tumor susceptibility ge 50.9 59 0.002 22.6 7.6 53 58-110 19-71 (78)
100 3cl3_D NF-kappa-B essential mo 50.8 23 0.0008 27.0 4.7 47 92-138 23-69 (130)
101 3efg_A Protein SLYX homolog; x 50.0 46 0.0016 23.1 5.9 46 41-86 12-57 (78)
102 1gk4_A Vimentin; intermediate 49.8 63 0.0022 22.6 12.3 74 32-108 4-77 (84)
103 2pjw_V Vacuolar protein sortin 49.4 69 0.0024 22.9 7.2 56 267-322 33-88 (91)
104 1l8d_A DNA double-strand break 49.0 75 0.0026 23.2 11.0 30 22-51 10-39 (112)
105 3htk_A Structural maintenance 48.8 51 0.0017 21.2 8.6 32 87-118 21-52 (60)
106 1go4_E MAD1 (mitotic arrest de 48.6 76 0.0026 23.1 9.8 24 286-309 69-92 (100)
107 2p2u_A HOST-nuclease inhibitor 48.5 1E+02 0.0035 24.7 9.9 57 256-315 19-75 (171)
108 1x8y_A Lamin A/C; structural p 47.9 70 0.0024 22.5 10.1 39 247-285 36-74 (86)
109 3mov_A Lamin-B1; LMNB1, B-type 47.5 76 0.0026 22.8 9.4 34 241-274 39-72 (95)
110 2w83_C C-JUN-amino-terminal ki 46.6 69 0.0024 22.1 9.2 47 57-103 9-55 (77)
111 2w83_C C-JUN-amino-terminal ki 46.2 70 0.0024 22.0 9.1 39 67-105 33-71 (77)
112 1fxk_C Protein (prefoldin); ar 46.0 94 0.0032 23.4 11.9 41 159-199 5-45 (133)
113 1deq_A Fibrinogen (alpha chain 43.7 1.9E+02 0.0065 26.3 15.1 37 146-182 61-97 (390)
114 3q8t_A Beclin-1; autophagy, AT 43.1 91 0.0031 22.4 14.0 78 39-123 7-84 (96)
115 1gd2_E Transcription factor PA 42.6 77 0.0026 21.5 6.0 17 83-99 48-64 (70)
116 1gk7_A Vimentin; intermediate 42.2 42 0.0014 20.0 4.0 32 16-47 7-38 (39)
117 2e50_A Protein SET; histone ch 42.1 1.2E+02 0.0041 25.5 8.5 52 269-320 28-79 (225)
118 1gk4_A Vimentin; intermediate 41.8 87 0.003 21.8 12.2 43 242-284 29-71 (84)
119 1jcd_A Major outer membrane li 41.2 67 0.0023 20.4 7.5 42 60-101 7-48 (52)
120 1uii_A Geminin; human, DNA rep 41.1 74 0.0025 22.3 5.7 37 13-49 37-73 (83)
121 2yy0_A C-MYC-binding protein; 39.9 45 0.0015 21.3 4.2 7 36-42 33-39 (53)
122 2yy0_A C-MYC-binding protein; 39.5 44 0.0015 21.3 4.1 20 58-77 20-39 (53)
123 3sjb_C Golgi to ER traffic pro 39.0 1.1E+02 0.0036 22.0 6.6 35 264-298 53-87 (93)
124 4gkw_A Spindle assembly abnorm 38.2 1.3E+02 0.0045 22.9 19.8 13 58-70 47-59 (167)
125 1wt6_A Myotonin-protein kinase 38.0 1E+02 0.0034 21.5 9.5 27 212-238 43-69 (81)
126 1gu4_A CAAT/enhancer binding p 37.6 1E+02 0.0034 21.4 6.6 36 92-127 43-78 (78)
127 2ve7_C Kinetochore protein NUF 36.8 7.5 0.00026 33.6 0.1 74 60-133 144-217 (250)
128 3etw_A Adhesin A; antiparallel 36.4 1.4E+02 0.0046 22.5 11.4 14 295-308 74-87 (119)
129 4emc_A Monopolin complex subun 36.3 1.8E+02 0.006 23.8 8.4 27 61-87 24-50 (190)
130 2w6a_A ARF GTPase-activating p 36.1 89 0.003 20.3 7.4 42 46-87 16-57 (63)
131 1m1j_B Fibrinogen beta chain; 35.9 2.8E+02 0.0096 26.0 15.9 12 30-41 101-112 (464)
132 3etw_A Adhesin A; antiparallel 35.9 1.4E+02 0.0047 22.5 12.3 30 282-311 72-101 (119)
133 3lay_A Zinc resistance-associa 34.3 1.8E+02 0.0062 23.4 10.2 29 267-295 113-141 (175)
134 1zhc_A Hypothetical protein HP 34.1 88 0.003 21.4 5.3 49 55-104 15-63 (76)
135 1wle_A Seryl-tRNA synthetase; 33.9 3.1E+02 0.011 26.0 12.2 28 89-116 120-147 (501)
136 3s84_A Apolipoprotein A-IV; fo 33.0 2.4E+02 0.0082 24.4 27.5 6 87-92 46-51 (273)
137 1hjb_A Ccaat/enhancer binding 32.7 1.3E+02 0.0045 21.2 6.9 38 91-128 42-79 (87)
138 1l8d_A DNA double-strand break 32.4 1.4E+02 0.0049 21.6 12.9 31 18-48 13-43 (112)
139 2a01_A Apolipoprotein A-I; fou 32.3 2.3E+02 0.0078 23.9 12.3 36 167-204 108-143 (243)
140 3m91_A Proteasome-associated A 32.2 97 0.0033 19.6 5.4 31 88-118 19-49 (51)
141 2l5g_B Putative uncharacterize 32.0 86 0.0029 18.9 4.7 31 258-288 7-37 (42)
142 1zhc_A Hypothetical protein HP 31.9 80 0.0027 21.6 4.8 59 15-74 3-61 (76)
143 1m1j_C Fibrinogen gamma chain; 31.0 3.2E+02 0.011 25.2 14.5 16 163-178 49-64 (409)
144 2xu6_A MDV1 coiled coil; prote 31.0 1.3E+02 0.0043 20.5 6.0 45 64-108 21-65 (72)
145 1kd8_B GABH BLL, GCN4 acid bas 30.9 61 0.0021 18.8 3.2 15 107-121 16-30 (36)
146 1m1j_C Fibrinogen gamma chain; 30.3 3.3E+02 0.011 25.1 11.8 43 63-105 83-125 (409)
147 2dgc_A Protein (GCN4); basic d 30.1 72 0.0025 21.0 4.1 11 37-47 45-55 (63)
148 3qne_A Seryl-tRNA synthetase, 29.8 2.7E+02 0.0093 26.3 9.6 11 125-135 14-24 (485)
149 1go4_E MAD1 (mitotic arrest de 29.7 1.6E+02 0.0055 21.4 9.2 11 109-119 78-88 (100)
150 3m48_A General control protein 29.5 82 0.0028 17.9 3.9 25 26-50 4-28 (33)
151 3hhm_B NISH2 P85alpha; PI3KCA, 28.7 3.3E+02 0.011 24.7 15.0 52 61-112 202-253 (373)
152 4emc_A Monopolin complex subun 28.7 2.4E+02 0.0081 23.0 9.2 45 29-73 13-57 (190)
153 3uux_B Mitochondrial division 28.4 2.7E+02 0.0093 23.6 10.4 49 63-111 176-224 (242)
154 3he5_B Synzip2; heterodimeric 28.3 1E+02 0.0034 18.6 6.1 39 83-121 8-46 (52)
155 2lw1_A ABC transporter ATP-bin 28.3 1.5E+02 0.0053 20.7 9.5 45 101-145 24-74 (89)
156 1ses_A Seryl-tRNA synthetase; 27.8 3.6E+02 0.012 24.8 10.3 24 27-50 33-56 (421)
157 2lw1_A ABC transporter ATP-bin 27.4 1.6E+02 0.0055 20.6 7.8 23 30-52 23-45 (89)
158 3l4q_C Phosphatidylinositol 3- 27.3 2.4E+02 0.0082 22.6 17.2 120 142-269 18-147 (170)
159 1wlq_A Geminin; coiled-coil; 2 27.3 1.5E+02 0.0053 20.7 5.5 36 14-49 30-65 (83)
160 2wq1_A General control protein 27.2 91 0.0031 17.7 3.8 23 98-120 6-28 (33)
161 4h22_A Leucine-rich repeat fli 26.4 1.9E+02 0.0065 21.1 10.7 13 27-39 28-40 (103)
162 2oqq_A Transcription factor HY 26.0 1.1E+02 0.0038 18.4 5.4 10 65-74 18-27 (42)
163 3vp9_A General transcriptional 25.6 1.1E+02 0.0037 21.9 4.6 19 224-242 53-71 (92)
164 3u06_A Protein claret segregat 25.2 1.7E+02 0.006 26.9 7.3 27 60-86 27-53 (412)
165 1hjb_A Ccaat/enhancer binding 24.9 1.8E+02 0.0063 20.4 6.2 31 57-87 43-73 (87)
166 2wvr_A Geminin; DNA replicatio 24.5 2.5E+02 0.0086 23.1 7.1 54 11-64 104-157 (209)
167 2xzr_A Immunoglobulin-binding 24.1 2E+02 0.0069 20.6 15.5 29 22-50 6-34 (114)
168 2pnv_A Small conductance calci 24.1 1.3E+02 0.0043 18.3 4.4 27 19-45 13-39 (43)
169 1gu4_A CAAT/enhancer binding p 23.6 1.8E+02 0.0063 20.0 5.7 28 57-84 43-70 (78)
170 2no2_A HIP-I, huntingtin-inter 23.2 2.2E+02 0.0076 20.8 13.3 90 30-122 2-91 (107)
171 1lq7_A Alpha3W; three helix bu 23.2 1.5E+02 0.0051 18.7 5.3 55 20-74 7-65 (67)
172 3tul_A Cell invasion protein S 23.1 2.7E+02 0.0092 21.7 9.4 58 29-86 69-129 (158)
173 2dgc_A Protein (GCN4); basic d 23.1 1.4E+02 0.0049 19.5 4.6 18 59-76 39-56 (63)
174 4dzo_A Mitotic spindle assembl 23.0 2E+02 0.0069 21.6 6.1 38 268-305 5-42 (123)
175 3vp9_A General transcriptional 22.7 1.9E+02 0.0066 20.6 5.5 28 274-301 57-84 (92)
176 3hhm_B NISH2 P85alpha; PI3KCA, 22.4 4.3E+02 0.015 23.9 15.3 49 74-122 201-249 (373)
177 3lay_A Zinc resistance-associa 21.9 3.1E+02 0.011 22.0 7.8 41 35-75 91-131 (175)
178 1m1j_A Fibrinogen alpha subuni 21.8 4.9E+02 0.017 24.3 16.3 50 236-285 108-157 (491)
179 1d7m_A Cortexillin I; coiled-c 21.5 2.2E+02 0.0076 20.1 12.4 48 20-67 9-56 (101)
180 3uux_B Mitochondrial division 21.4 3.7E+02 0.013 22.7 9.4 57 18-74 159-215 (242)
181 3r4h_A Coiled coil helix CC-TE 21.2 1.1E+02 0.0039 16.7 3.7 27 86-112 3-29 (34)
182 2zvf_A Alanyl-tRNA synthetase; 20.8 91 0.0031 24.5 4.0 6 30-35 33-38 (171)
183 1m1j_A Fibrinogen alpha subuni 20.7 5.2E+02 0.018 24.1 15.9 42 142-183 55-96 (491)
184 2zxx_A Geminin; coiled-coil, c 20.6 2.2E+02 0.0075 19.7 6.6 26 17-42 29-54 (79)
185 1lj2_A NSP3-C, nonstructural R 20.5 2.5E+02 0.0087 20.4 6.1 36 280-315 12-47 (110)
186 2yko_A LINE-1 ORF1P; RNA-bindi 20.2 1.6E+02 0.0056 24.9 5.4 41 29-69 6-46 (233)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.27 E-value=5.8e-07 Score=79.34 Aligned_cols=99 Identities=9% Similarity=0.098 Sum_probs=43.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 99 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~ 99 (327)
+...+..+...+..+......+...+..+..........+..+...+..+...+..+......+...+..+......+..
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHhhhHHHHHHHHHHHHhc
Q 020385 100 KFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 100 ~l~~~~~~i~~~~~e~~~L 118 (327)
.+..+...+..+..++..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 84 DVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.18 E-value=1.7e-06 Score=76.31 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 020385 292 AKLQELASKAEEIVEKFQQYTNSI 315 (327)
Q Consensus 292 ~e~~~~~~~~~~L~~~~~~Y~~~l 315 (327)
..+..+...+..+...+..+.+.|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 258 DELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555554444
No 3
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=98.38 E-value=1.1e-07 Score=83.97 Aligned_cols=68 Identities=7% Similarity=0.104 Sum_probs=48.3
Q ss_pred cccchhhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 020385 2 LLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69 (327)
Q Consensus 2 a~INf~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL 69 (327)
|||||++|||+++..|+++..+.+++..++.+++.++..++++|++++..+.+....+.-..+.+..|
T Consensus 128 alINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~ql 195 (250)
T 2ve7_C 128 GIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQL 195 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998777765544333344444
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.57 E-value=0.035 Score=48.80 Aligned_cols=176 Identities=13% Similarity=0.126 Sum_probs=77.0
Q ss_pred HHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 108 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS 187 (327)
Q Consensus 108 i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~ 187 (327)
+..+..++.+|.+.+..-|..+...-..+......+..+...+ ...-..+..++.+|..+...+......+..
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l-------~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEK-------LALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444455555555555546554433333333333333332222 222233344455555555555555555544
Q ss_pred HhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 188 AKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQK 267 (327)
Q Consensus 188 ~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~ 267 (327)
.. ..+++.++..+++. +......+...+..+...++.+......... .+..++..+......++..
T Consensus 86 v~-~~kE~~aL~kEie~-------~~~~i~~lE~eile~~e~ie~~~~~l~~~~~----~l~~~~~~l~~~~~~~~~~-- 151 (256)
T 3na7_A 86 IK-SERELRSLNIEEDI-------AKERSNQANREIENLQNEIKRKSEKQEDLKK----EMLELEKLALELESLVENE-- 151 (256)
T ss_dssp CS-SSSHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--
T ss_pred cC-CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--
Confidence 33 13355555555555 4444444444444444444444443333333 3333333333322222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385 268 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 308 (327)
Q Consensus 268 ~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~ 308 (327)
+..+..++..+......+...... .+...|.+|+...
T Consensus 152 -~~e~~~e~~~l~~~r~~l~~~i~~---~lL~~Yerir~~~ 188 (256)
T 3na7_A 152 -VKNIKETQQIIFKKKEDLVEKTEP---KIYSFYERIRRWA 188 (256)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhC
Confidence 122223333444444444444333 4566777777643
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.34 E-value=0.05 Score=45.22 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 020385 28 DEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 107 (327)
Q Consensus 28 ~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~ 107 (327)
..........+..++..+.+...--.+.+. ++.+++..+...+..+...-..|..++..+|.+......+... .
T Consensus 16 k~~~~~~~q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~---~ 89 (189)
T 2v71_A 16 KELSMKYKQSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK---Q 89 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 333344444555555555555543332222 2233444455555555555445555555544444443333111 2
Q ss_pred HHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 108 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS 187 (327)
Q Consensus 108 i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~ 187 (327)
+..+..++..|+.. -+. ....+..++...+..-+....+..++..++..+...+...--++.++.-
T Consensus 90 ~~~Lq~el~~l~~~----~~~----------l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 90 VSVLEDDLSQTRAI----KEQ----------LHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHH----HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHH----------HHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334443333211 011 2334444566666666666666677777777777777666666666653
Q ss_pred HhhHHHHHHHHHHhhch
Q 020385 188 AKSIEKDYKSLKARLND 204 (327)
Q Consensus 188 ~~~~~~~~~~l~~~l~~ 204 (327)
-......+.+|++++.+
T Consensus 156 Ke~l~~~~QRLkdE~rD 172 (189)
T 2v71_A 156 KESLLVSVQRLKDEARD 172 (189)
T ss_dssp HHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33222233344444444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.11 E-value=0.12 Score=45.24 Aligned_cols=22 Identities=0% Similarity=-0.019 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 020385 276 VDAITSKTKFVKESGAAKLQEL 297 (327)
Q Consensus 276 i~~le~~i~~~~~~~e~e~~~~ 297 (327)
+..++..+...+......+..+
T Consensus 134 l~~~~~~l~~~~~~~~~~~~e~ 155 (256)
T 3na7_A 134 MLELEKLALELESLVENEVKNI 155 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.54 E-value=1.8 Score=50.44 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=16.1
Q ss_pred hHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRS-ELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~-~l~~~~~~l~~~i~~~k~ 50 (327)
|-++...+..+..+.+ ++......+..=+.++..
T Consensus 1897 yLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444333 455555555544444443
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.26 E-value=1 Score=47.51 Aligned_cols=57 Identities=9% Similarity=0.167 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKK 268 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~ 268 (327)
|+.++.++...+..+......+++....+..+++.++..++.+...++++++..+..
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666666666666666666777777777666666666633
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.23 E-value=6.5 Score=46.06 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV 273 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~ 273 (327)
++.++.....++...+..+..+.++++.+.. +++....+.+.+..+.+..+.+++...
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~----~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKE----EYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444 444444444444445444444444443
No 10
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.95 E-value=0.73 Score=33.68 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=46.8
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 14 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK 89 (327)
Q Consensus 14 ~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~ 89 (327)
-..+..|.+...+..++++.|+.+|..|+.+|..+...... ....-....+.+|+..|..+......+..+++.
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~--~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999988764211 111112334444444444444444444444333
No 11
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.90 E-value=1.2 Score=35.69 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=87.4
Q ss_pred chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 020385 13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ-DLNKHQVSLRTTLNKLK 91 (327)
Q Consensus 13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~-~l~~~q~~l~~~~~~lk 91 (327)
++..|.....++..+...+.....++..|...+..-+..+..-+.....+..++.+|...|. +-|+.-..-+.....++
T Consensus 35 ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e 114 (154)
T 2ocy_A 35 AIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIE 114 (154)
T ss_dssp HHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666677777888888888888888888888899999999999999998 56666666666677778
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385 92 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 124 (327)
Q Consensus 92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~ 124 (327)
.+...|...+.+....+..+......|+.-+..
T Consensus 115 ~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888765544
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.64 E-value=1.4 Score=35.58 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 302 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~ 302 (327)
++..+..+++.++..+.........+...+..++.+.+++.-+..-+++.+...|.
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44445555555555554444444444455555555555554444444444444443
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.55 E-value=1.2 Score=34.15 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 020385 166 KTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDAT 245 (327)
Q Consensus 166 ~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~ 245 (327)
.++..|..+.+++..+..+-.++.. ++.+++..+++ +..+..+-...
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~l---eldn~~~~~ed-------fk~KyE~E~~~----------------------- 63 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEV---ERDNLAEDIMR-------LREKLQEEMLQ----------------------- 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHhhHHHHHH-----------------------
Confidence 4455677777777777666666655 55555555555 54444433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385 246 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELA 298 (327)
Q Consensus 246 ~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~ 298 (327)
...++..+..++..++..--..-.+..++..+..++..++..|+.|+..+.
T Consensus 64 --r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 64 --REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444444444443333334447777888888888888888888765
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.55 E-value=1.2 Score=34.15 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 020385 226 LDELQQQLEKERNL 239 (327)
Q Consensus 226 l~~~l~~~~e~~~~ 239 (327)
++.++..+.+++.-
T Consensus 88 LE~~iesL~eEl~F 101 (119)
T 3ol1_A 88 LERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.42 E-value=1.1 Score=33.26 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
+.........+...+..+++....+..+++.+..........++........+..++..|.-+|
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555556666666666666666777777666676777777665554
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.41 E-value=1.3 Score=34.27 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT 283 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i 283 (327)
|+.++.-+.+....++..+.........-..+.+..+..++.++..++.++...-+....+.+---.+..+|
T Consensus 48 L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 48 LRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444446666666666666666665555555544333333333
No 17
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.39 E-value=1.4 Score=34.31 Aligned_cols=72 Identities=10% Similarity=0.171 Sum_probs=36.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT 283 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i 283 (327)
|+.++.-+.+....++..+.........-..+.+..+..++.++..++.++...-+....+.+---.+..+|
T Consensus 50 L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 50 LEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444446666666666666666665555555543333333333
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.36 E-value=2 Score=45.29 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=0.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 94 TGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 94 ~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
+..|..++..+...+.....+...|...+
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~ 951 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKM 951 (1080)
T ss_dssp ----------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.10 E-value=1.9 Score=34.86 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=57.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 21 AEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK 100 (327)
Q Consensus 21 ~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~ 100 (327)
..+.+++.+.++.-.+....+.....++.......+..+.+++..+..|...-..+.+....|+..+..=+.......+-
T Consensus 12 ekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~ 91 (168)
T 3o0z_A 12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555566665555555555555555555555555556666
Q ss_pred HhhhHHHHHHHHHHHHhchh
Q 020385 101 FSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 101 l~~~~~~i~~~~~e~~~L~s 120 (327)
+.++...+..+..++++++.
T Consensus 92 ~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666643
No 20
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.87 E-value=1.4 Score=32.56 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
+.........+...+..++++...+..++..+..........++........+..++..|.-+|
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666677777777777777777788887777777777877776555
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.74 E-value=2.5 Score=34.95 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385 167 TLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND 204 (327)
Q Consensus 167 ~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~ 204 (327)
++++|..+-+...++...+..+.. ++..++.++..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~---E~e~~k~K~~~ 81 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKY---EVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344555555555555555544444 44444444433
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.52 E-value=1.3 Score=31.27 Aligned_cols=66 Identities=26% Similarity=0.380 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385 25 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
+.+..++.++-+.|.-|+.++++++. ++..|.+....+......|..+...++.+...+...|..+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKe--------------kN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKE--------------KNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666655555 4444444444444555555555555555555555555443
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.79 E-value=0.96 Score=35.13 Aligned_cols=25 Identities=4% Similarity=-0.001 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQ 179 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~ 179 (327)
++++.+.++-..+..+|.-|.++|+
T Consensus 103 ~EYq~LlnvKl~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 103 REYQELMNTKLALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 7788888888888888888887764
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.55 E-value=1.5 Score=34.16 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQ 179 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~ 179 (327)
++++.+.++-..+..+|+-|.++|+
T Consensus 105 ~EYq~Ll~vKl~Ld~EIatYRkLLE 129 (131)
T 3tnu_A 105 QEYKILLDVKTRLEQEIATYRRLLE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 7888888888888889988888775
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.46 E-value=2 Score=30.31 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385 81 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 81 ~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
..|+-++..+|.+...+..+...+......+..++.+|+
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333334444444444444444443333333333333333
No 26
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.20 E-value=3.7 Score=32.81 Aligned_cols=110 Identities=18% Similarity=0.137 Sum_probs=59.0
Q ss_pred HHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 194 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV 273 (327)
Q Consensus 194 ~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~ 273 (327)
.+..+...|...+..+|+|+..-.....+-.....++..+..++..... +.......+..+-..++..+..+....
T Consensus 43 k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~----RAE~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 43 KSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET----RAEFAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555556665555555555555555555554444444 444444444444445555555555554
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 274 TEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY 311 (327)
Q Consensus 274 ~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y 311 (327)
..+..+...++. .=.++..+...||-|.+.|...
T Consensus 119 ek~~~i~~eLd~----tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 119 LKYKAISEEMKQ----LEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHhcccchHHHHHHHHHh
Confidence 555555555553 2245555677777777766543
No 27
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.19 E-value=3.7 Score=32.81 Aligned_cols=99 Identities=15% Similarity=0.226 Sum_probs=56.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 21 AEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK 100 (327)
Q Consensus 21 ~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~ 100 (327)
..+.....+.-+..++++..++..++........-+..+.++..++...-+.+..+...-.....+-..|......|..+
T Consensus 6 E~qlkeaae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~k 85 (155)
T 2efr_A 6 EDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDK 85 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555565666666665555555555556666666655555555555555555566666666666666
Q ss_pred HhhhHHHHHHHHHHHHhch
Q 020385 101 FSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 101 l~~~~~~i~~~~~e~~~L~ 119 (327)
+..+......+...+..|.
T Consensus 86 LKEAE~RAE~AERsv~kLE 104 (155)
T 2efr_A 86 LKEAETRAEFAERSVTKLE 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666555555555553
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.98 E-value=2.8 Score=30.96 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 020385 168 LKKMSKQSAQMQAILEQVNSAKS 190 (327)
Q Consensus 168 e~el~~~~~~l~~~~~el~~~~~ 190 (327)
.+.|..+....+.+......++.
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~ 30 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEA 30 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 29
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.72 E-value=0.7 Score=36.03 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=70.9
Q ss_pred chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 020385 13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ-DLNKHQVSLRTTLNKLK 91 (327)
Q Consensus 13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~-~l~~~q~~l~~~~~~lk 91 (327)
++.-|..+..++..+......+..++..|...+..-+..+..-+.....+..++.+|...+. +.|+.-..-+.....++
T Consensus 23 ~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e 102 (135)
T 2e7s_A 23 AIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIE 102 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555577777778888888777888888889999999999999998 55666555666667777
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385 92 EKTGALDEKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L~s 120 (327)
.+...|...+.+....|..+......|+.
T Consensus 103 ~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 103 ILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777887777777777777776654
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.26 E-value=1.7 Score=42.40 Aligned_cols=27 Identities=15% Similarity=-0.069 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 92 EKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
.....+..++......+.....+++..
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333333333333444444444333
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.85 E-value=6.3 Score=38.29 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 020385 25 TRLDEQRSELEDKISQLNAEI 45 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i 45 (327)
..+.++.......+.....++
T Consensus 466 ~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 466 QQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333
No 32
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.73 E-value=3.7 Score=29.98 Aligned_cols=87 Identities=20% Similarity=0.331 Sum_probs=56.7
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ-DLNKHQVSLRTTLNKLKEKTG 95 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~-~l~~~q~~l~~~~~~lk~~~~ 95 (327)
|..+..++..+..+......++..|...+..-+..+..-+.....+..++.+|...|. +-|+.-..-+.....+..+..
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~ 86 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNK 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666667777777777777777788888888999988888 445444444444455555555
Q ss_pred HHHHHHhh
Q 020385 96 ALDEKFSQ 103 (327)
Q Consensus 96 ~l~~~l~~ 103 (327)
.|..+|.+
T Consensus 87 ~L~~qL~d 94 (97)
T 2eqb_B 87 RLTEQLRE 94 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 55555443
No 33
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.93 E-value=5.5 Score=30.72 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 020385 30 QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 109 (327)
Q Consensus 30 ~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~ 109 (327)
.+.....++..+...+......+...+.....+..+.+.|...+..-.....-....+..+...+..|-..+..+...+.
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555555544444444455555555555555555555555555
Q ss_pred HHHHHHHhc
Q 020385 110 QSVQQNADL 118 (327)
Q Consensus 110 ~~~~e~~~L 118 (327)
.....+..|
T Consensus 94 eeee~~~~L 102 (129)
T 2fxo_A 94 DEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.01 E-value=5.4 Score=29.35 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 020385 274 TEVDAITSKTKF 285 (327)
Q Consensus 274 ~ei~~le~~i~~ 285 (327)
+++..++..|..
T Consensus 86 ~evasLnRriql 97 (101)
T 3u59_A 86 AEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 35
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=88.69 E-value=5.6 Score=29.07 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s 120 (327)
-..+..++..++.....+...-...-.+++.++-......+++..+...+.......++|+.
T Consensus 34 ~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 34 RKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444455555555555555555566666667777777777777777777777777653
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.42 E-value=13 Score=35.47 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 146 AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSA 176 (327)
Q Consensus 146 ~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~ 176 (327)
.++.+.....+++..++.+.+..+++..+.+
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k 88 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTT 88 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHH
Confidence 3333333345555555555555555555443
No 37
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=88.32 E-value=7.5 Score=30.75 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLA 150 (327)
Q Consensus 85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~ 150 (327)
.++............+|..+.....+...-+..|..+-..+.+++...=..++..+......++++
T Consensus 10 eeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKy 75 (147)
T 2b9c_A 10 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY 75 (147)
T ss_dssp -CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333333444444455555555555554444555555555555554443333444444334444433
No 38
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=87.67 E-value=5.7 Score=28.73 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385 25 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
+.+..++.....-....+..|.+++..+......+ ..+.-|++++.-|...-.+-+.....+..++..|...+..+
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444555555555555433222222 46777888888888887777777777777777777766666
Q ss_pred HHHHHHHHH
Q 020385 105 EFDLVQSVQ 113 (327)
Q Consensus 105 ~~~i~~~~~ 113 (327)
...+..+..
T Consensus 81 q~q~~~L~~ 89 (94)
T 3jsv_C 81 QREFNKLKV 89 (94)
T ss_dssp HHTTC----
T ss_pred HHHHHHHHH
Confidence 555544443
No 39
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.55 E-value=7 Score=27.89 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 020385 251 VKLEMESKRQDLEA 264 (327)
Q Consensus 251 ~~~e~~~~~~el~~ 264 (327)
++..+..++..++.
T Consensus 47 ~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 47 AENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhhHHH
Confidence 33333444443333
No 40
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.89 E-value=13 Score=29.42 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
.+..++.++..+..+|..+..........+..+.++...|.-++..+...+..+..|...|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555666666666666666666666666666666
No 41
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=84.45 E-value=14 Score=29.37 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 020385 32 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ 80 (327)
Q Consensus 32 ~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q 80 (327)
..|...+..+...+..+........+.+..|...+..|...+..+....
T Consensus 32 ~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 32 KDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333333444555566666666665555555443
No 42
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=84.39 E-value=11 Score=28.12 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK 199 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~ 199 (327)
.+.+..+..|..+...+..+...+..+..++..+..+..++..+.
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~ 50 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP 50 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356677788899999999999999999999988888777777663
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=83.96 E-value=12 Score=28.43 Aligned_cols=44 Identities=5% Similarity=0.079 Sum_probs=20.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020385 218 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQD 261 (327)
Q Consensus 218 e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~e 261 (327)
.|...+..+...++.+.-+...+..++...+..++.++..-+..
T Consensus 19 ~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 19 RLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444555555555444433
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.76 E-value=9.2 Score=26.83 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 103 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~ 103 (327)
+.........+...+..++++...+..++..+.........+|+.
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555555555555555555555555544
No 45
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=83.22 E-value=10 Score=27.00 Aligned_cols=58 Identities=17% Similarity=0.362 Sum_probs=36.6
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ 74 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~ 74 (327)
+.+|..+.+.+......+..++..+...+.+++.+...+-..-..+..++..|+.-+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3566677777777777777777777777777777666555555555555554444333
No 46
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=82.50 E-value=10 Score=26.50 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385 62 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 124 (327)
Q Consensus 62 l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~ 124 (327)
...+...|-++|+.+.-...-+..+-.+|..+...-..+|..+...+..-..++.+|.++++.
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 334445566666666666666666666666666666677778888888888888888777654
No 47
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.91 E-value=5.8 Score=26.50 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=29.6
Q ss_pred hhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 7 LNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 7 ~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
.+||.-+..-+..+..+.+.+......|...+..|+.++..++.
T Consensus 15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 15 TRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46776666677777777777766666666666666666666654
No 48
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.68 E-value=10 Score=29.43 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 234 EKERNLKSEDATRAFENVKLEMESKRQDLEARQ 266 (327)
Q Consensus 234 ~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~ 266 (327)
-++.+.+....++....++.....+...+...+
T Consensus 84 FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 84 FDEANNLVADARMEKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444
No 49
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.59 E-value=15 Score=27.24 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=50.9
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 95 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~ 95 (327)
.++.|........+.+.....++..+..++...+... ..+.-|++++.-|...-.+-+..-..+-.++.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l-----------E~I~vLkaQv~IY~~DF~aERadREkl~~eKe 93 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-----------ETVPVLKAQADIYKADFQAERHAREKLVEKKE 93 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHccchhhHHHHHhHHH
Confidence 3566666666666666666666666666555543322 25777788888888877777777666666666
Q ss_pred HHHHHHhhhHHH
Q 020385 96 ALDEKFSQTEFD 107 (327)
Q Consensus 96 ~l~~~l~~~~~~ 107 (327)
.|..+++.+...
T Consensus 94 ~L~~ql~~Lq~q 105 (110)
T 2v4h_A 94 YLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666554433
No 50
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.42 E-value=16 Score=27.21 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 79 HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 79 ~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
.-.....+...=.....++..+++.+...+..+..++..|
T Consensus 70 Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 70 QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3333333333334445556666666666555555555444
No 51
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=80.27 E-value=13 Score=26.09 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
++.+..+|.+|+.++..++.....-..+-..++.+...+.+.|.-.-+.+..+.+.+.+|
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444555555555555555555555444
No 52
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=79.65 E-value=16 Score=26.73 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385 157 KTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK 199 (327)
Q Consensus 157 l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~ 199 (327)
++..+..|..+..++..+...+..+..++..+..+..++..+.
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~ 45 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA 45 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4567788999999999999999999999999998888887763
No 53
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=79.62 E-value=17 Score=27.21 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=44.5
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 95 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~ 95 (327)
.++.|......+.+++....++-..|+..|..-+. .-.+.|..|...+..-++.|..+.......... ....-.
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E---~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~ 80 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSE---DSSHQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34555555555555555555555555555444333 233566666666666666666555443332222 233444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhch
Q 020385 96 ALDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 96 ~l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
.|+...+.....+..+..+++.|.
T Consensus 81 ~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 81 VLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHhhccchh
Confidence 555555556666677777777776
No 54
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.51 E-value=22 Score=28.29 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=21.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 233 LEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVD 277 (327)
Q Consensus 233 ~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~ 277 (327)
+-++.+.+....++....++.....+...+...+..++....++.
T Consensus 95 LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 95 LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555545554555555555555554444443333333
No 55
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=79.01 E-value=22 Score=28.04 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=10.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 020385 214 AKLIERQGKVEQLDELQQQLEKERN 238 (327)
Q Consensus 214 ~~~~e~~~~~~~l~~~l~~~~e~~~ 238 (327)
.++.+..+++..+...+....++..
T Consensus 73 rKyeE~~RKl~~~E~dLeraeeRae 97 (147)
T 2b9c_A 73 RKYEEVARKLVIIESDLERAEERAE 97 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.85 E-value=15 Score=25.65 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=32.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS 82 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~ 82 (327)
+..++..+....+...+....++..+.........-+..+..+++.+..++..+..+...-..
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554444555555555555555555444444333
No 57
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=77.08 E-value=6.4 Score=25.28 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 84 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 84 ~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
...+..||+-...|..++..+.|......+||++|..-+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778899999999999999999999999999996543
No 58
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=76.89 E-value=11 Score=26.32 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHH
Q 020385 83 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 139 (327)
Q Consensus 83 l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~ 139 (327)
+..++..+..+...|.+.+..+...+.....+..+++.-+..-.+.|-..|-+|...
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~el 67 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSEL 67 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444455555555555555555555555555555444444444444444444443
No 59
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=76.75 E-value=22 Score=26.96 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 221 GKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 285 (327)
Q Consensus 221 ~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~ 285 (327)
..|++|...+..+..++..+..+.+..+..++..+..+.-++............+.+.+..++..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666666655555555555555555554
No 60
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=76.50 E-value=6.6 Score=21.54 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 020385 86 TLNKLKEKTGALDEKFSQTEFDLVQSVQ 113 (327)
Q Consensus 86 ~~~~lk~~~~~l~~~l~~~~~~i~~~~~ 113 (327)
++..+|++...+..++..++|.|..+.+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666666666666777776666543
No 61
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=76.07 E-value=16 Score=25.04 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 020385 61 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 117 (327)
Q Consensus 61 ~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~ 117 (327)
.+..+|.+|+.++..++.....-..+-..++.+...+.+-+.-.-+.+..+.+.+.+
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333344444444444444433333333444444444444444444444444444443
No 62
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=75.80 E-value=9.1 Score=23.98 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
.++..||.-...|..++..+.+......+||.+|+.-+
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45778888888899999999999999999999997544
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.34 E-value=20 Score=25.82 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=17.9
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 020385 48 YNEVRERELPLVQEVDAKVKELRQTIQDLNK 78 (327)
Q Consensus 48 ~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~ 78 (327)
+...++.--..|..|++.|..|+.+|..+..
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333344566666777777777766654
No 64
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.04 E-value=24 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385 155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK 189 (327)
Q Consensus 155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~ 189 (327)
+.++...++|...+..-..|...+..+...|.+.+
T Consensus 32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ek 66 (121)
T 3mq7_A 32 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEK 66 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777777776666666655544
No 65
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=74.55 E-value=21 Score=25.51 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 38 ISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 79 (327)
Q Consensus 38 ~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~ 79 (327)
+..+..++..++..+...+....++...+..|.+..+.+...
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 66
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=74.46 E-value=43 Score=29.17 Aligned_cols=41 Identities=12% Similarity=0.374 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 020385 61 EVDAKVKELRQTIQDLNKH-QVSLRTTLNKLKEKTGALDEKF 101 (327)
Q Consensus 61 ~l~~~~~eL~~~i~~l~~~-q~~l~~~~~~lk~~~~~l~~~l 101 (327)
.+.+.+.+++..+.-|... +..+......|+....-+..++
T Consensus 41 ~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el 82 (273)
T 3s84_A 41 KIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRM 82 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344555555555544333 3344444545544444444443
No 67
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=74.18 E-value=21 Score=25.34 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 154 FQEKTTTLEVYQKTLKKMSKQSAQMQAI 181 (327)
Q Consensus 154 ~~~l~~~~e~~~~~e~el~~~~~~l~~~ 181 (327)
.++++...++-..++.+|+-+.++++.-
T Consensus 55 l~EYq~LlnvK~~Le~EIatYRkLLEGE 82 (86)
T 1x8y_A 55 LDEYQELLDIKLALDMEIHAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 3888889999999999999999998854
No 68
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=74.14 E-value=25 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVD 277 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~ 277 (327)
++..++.+|..+.+.+.....+++.++....
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 4444444444444444444444444443333
No 69
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=72.29 E-value=21 Score=24.51 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHH
Q 020385 83 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 140 (327)
Q Consensus 83 l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~ 140 (327)
+..++..+..+...|.+++..+...+.....+..+++.-+..-.+.|-..|-+|...+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555555566666666666666666666666665444444444444444444433
No 70
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=72.05 E-value=28 Score=25.99 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 140 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQV 185 (327)
Q Consensus 140 ~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el 185 (327)
...+..+++..+..-+....+..++..++..+...+..---++.++
T Consensus 55 ~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 55 HKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666766666777777777776666666655444444444
No 71
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=69.95 E-value=3.8 Score=21.67 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 020385 87 LNKLKEKTGALDEKFSQTEFDLVQS 111 (327)
Q Consensus 87 ~~~lk~~~~~l~~~l~~~~~~i~~~ 111 (327)
++.+|++..++..+|..+.+.|..+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3467777778888887777777655
No 72
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.41 E-value=15 Score=25.14 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=8.2
Q ss_pred HHhhhHHHHHHHHHHHHhchh
Q 020385 100 KFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 100 ~l~~~~~~i~~~~~e~~~L~s 120 (327)
.|......|..+..++++++|
T Consensus 48 ~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 48 ELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333333333344444444433
No 73
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=69.19 E-value=30 Score=25.11 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=17.0
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 15 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 15 ~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
..|..+..+...+..++..+..+...+..-+.++..
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444555555555554444444444444443
No 74
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=68.80 E-value=32 Score=25.25 Aligned_cols=46 Identities=7% Similarity=0.082 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 020385 27 LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQT 72 (327)
Q Consensus 27 l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~ 72 (327)
..-...+|..+-+.+.=++.-++..+.+.+..+.++++++.+....
T Consensus 14 AMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re 59 (103)
T 4h22_A 14 AMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444333
No 75
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=68.02 E-value=18 Score=23.69 Aligned_cols=42 Identities=14% Similarity=0.307 Sum_probs=19.1
Q ss_pred hhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 8 NLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 49 (327)
Q Consensus 8 ~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k 49 (327)
++|.-+.....++....+.+......|..++..|..++..++
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 76
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.72 E-value=28 Score=23.83 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKL 90 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~l 90 (327)
++...+..+.+|+..|.++......|+.+++.+
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555555555555555555555544
No 77
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=66.50 E-value=21 Score=27.24 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 291 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e 291 (327)
|-.++.+.+.++.........++++.-.+.. +...+..++++.+++... .++.+.-++..+++.+..-+....
T Consensus 7 L~~ELqEsqskL~~Ae~~k~~Leek~~~~e~----~~~~~~~Elee~kqq~~~---~~d~L~lQ~esmeaalkmEr~~~~ 79 (130)
T 3cl3_D 7 SLGELQESQSRLEAATKECQALEGRARAASE----QARQLESEREALQQQHSV---QVDQLRMQGQSVEAALRMERQAAS 79 (130)
T ss_dssp ------------------------------------------------CTTTH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444444444433333 444444444443222221 122222334444444444444443
Q ss_pred HHH---HHHHHHHHHHHH
Q 020385 292 AKL---QELASKAEEIVE 306 (327)
Q Consensus 292 ~e~---~~~~~~~~~L~~ 306 (327)
.|. ..+...|..|..
T Consensus 80 eEKrkLAqLQ~AY~~Lfq 97 (130)
T 3cl3_D 80 EEKRKLAQLQVAYHQLFQ 97 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 332 334445555543
No 78
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=65.48 E-value=49 Score=26.16 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHH
Q 020385 59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE 127 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe 127 (327)
+.-+...+..|..++..-+.-...|..-...++.........++..+..+..+..-...|++.+..-|+
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 334455555666666666666777777777777788888888888888888888888888888888776
No 79
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=64.52 E-value=29 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 020385 25 TRLDEQRSELEDKISQLNAEIAAY 48 (327)
Q Consensus 25 e~l~~~~~~l~~~~~~l~~~i~~~ 48 (327)
.++..++...+++|..|..=+..+
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgsl 29 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETL 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333
No 80
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.78 E-value=52 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 28 DEQRSELEDKISQLNAEIAAYNEVR 52 (327)
Q Consensus 28 ~~~~~~l~~~~~~l~~~i~~~k~~~ 52 (327)
...+..+..+...+..+|.++...+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 81
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.43 E-value=16 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=12.8
Q ss_pred hhhhchhhhHHHHHHhhhHHHHHHHHHHHHH
Q 020385 9 LRDTKMNLLRPIAEDLTRLDEQRSELEDKIS 39 (327)
Q Consensus 9 Free~~~~~~~l~~~~e~l~~~~~~l~~~~~ 39 (327)
||+-+-.-+.+|..+...+......+..++.
T Consensus 23 fReRK~~~i~~LE~~v~~le~~~~~l~~en~ 53 (70)
T 1gd2_E 23 FRKRKEDHLKALETQVVTLKELHSSTTLEND 53 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333333333333
No 82
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=62.53 E-value=37 Score=23.72 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHH
Q 020385 166 KTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDEL 229 (327)
Q Consensus 166 ~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~ 229 (327)
.+-.+|..+.-.+.+++.+-..++. .+++.+++|.. |+.++..-...+..+..+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEk---KLKsTK~El~~-------Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEW---KLKATKAEVAQ-------LQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHH-------HHHHHHhhHHHHHHHHHH
Confidence 3444666666677777777666665 66666666666 665555555555554443
No 83
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.87 E-value=45 Score=24.54 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=14.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
.+..++..+..++..+...+..+..++..+..
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444
No 84
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=61.60 E-value=12 Score=24.65 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=22.9
Q ss_pred hhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 8 NLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 49 (327)
Q Consensus 8 ~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k 49 (327)
++|.-+...+.++....+.+......|..++..|..++..++
T Consensus 15 k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 15 KSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555554443
No 85
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=60.75 E-value=60 Score=25.62 Aligned_cols=111 Identities=10% Similarity=0.097 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhh--------hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 020385 172 SKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVL--------DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSED 243 (327)
Q Consensus 172 ~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~--------~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~ 243 (327)
..+++.|++++...-.-..+...+..+.-++++-... .+.|...+++....+......+..-.+.+..+..
T Consensus 25 ~elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~- 103 (152)
T 4fla_A 25 EELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLAR- 103 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445555555555444444444566665554443332 1235555666666666665555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 244 ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 286 (327)
Q Consensus 244 ~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~ 286 (327)
.+.++...+.....+....-.....+.+++..++++++.+
T Consensus 104 ---~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~h 143 (152)
T 4fla_A 104 ---MLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSH 143 (152)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333333333333334444444444443
No 86
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=60.27 E-value=51 Score=24.62 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=18.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 216 LIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQ 266 (327)
Q Consensus 216 ~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~ 266 (327)
+..+..+++.-+..+..++..........+..+..+....+.+-.++..++
T Consensus 47 V~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ 97 (112)
T 1x79_B 47 ISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQ 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333344433333343333333333
No 87
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=59.76 E-value=24 Score=24.55 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 020385 26 RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ 74 (327)
Q Consensus 26 ~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~ 74 (327)
.+..++..|+..++-.+.-|+++..........+..++..+.-|..++.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544444444444444444443333
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.05 E-value=1.2e+02 Score=28.37 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020385 29 EQRSELEDKISQLNAEIAAYN 49 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i~~~k 49 (327)
.+...+.......+....+..
T Consensus 367 ~~~~~le~~~~~~~~~~~~~~ 387 (487)
T 3oja_A 367 QKKKALDEQVSNGRRAHAELD 387 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 333344444444443333333
No 89
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=58.21 E-value=72 Score=25.70 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
++..+.....-|...|..+......|...+.......-.+..+++.++-.+..+....++.
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~y 150 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQY 150 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444555555566666666666666666665555555555555555555555554444433
No 90
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=58.15 E-value=29 Score=22.66 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 020385 34 LEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN 77 (327)
Q Consensus 34 l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~ 77 (327)
++..+..++.++..++......-++++.+-.---.|..+|..|.
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44445555555555555544444444444444444444444444
No 91
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=57.80 E-value=35 Score=22.00 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 020385 73 IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV 112 (327)
Q Consensus 73 i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~ 112 (327)
+...+.........+..++.....+...++.....|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 14 VEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444333333
No 92
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.67 E-value=1.2e+02 Score=27.69 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=28.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 236 ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 285 (327)
Q Consensus 236 ~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~ 285 (327)
.+.++..++..++.-++..+..-...+..++.-++..+.+|..|+..|+.
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555556666666666666666666666644
No 93
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=55.84 E-value=61 Score=24.16 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=4.9
Q ss_pred HHHHHHHHHhHHH
Q 020385 212 LEAKLIERQGKVE 224 (327)
Q Consensus 212 l~~~~~e~~~~~~ 224 (327)
|...+..|..+..
T Consensus 15 L~~E~e~~k~K~~ 27 (111)
T 2v66_B 15 LKYEVEALKEKLE 27 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 94
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=55.54 E-value=47 Score=22.79 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 020385 31 RSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 76 (327)
Q Consensus 31 ~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l 76 (327)
+..++..+..++.++..++......-.+++.+-.---.|..+|..|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555554444333333333333333333333333
No 95
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.89 E-value=1.4e+02 Score=27.68 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=7.6
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 020385 213 EAKLIERQGKVEQLDELQQ 231 (327)
Q Consensus 213 ~~~~~e~~~~~~~l~~~l~ 231 (327)
+.++.+.+....+++.+..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 403 QQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhh
Confidence 3334444444444433333
No 96
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=51.21 E-value=66 Score=23.16 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385 58 LVQEVDAKVKELRQTIQDLN---KHQVSLRTTLNKLK-------EKTGALDEKFSQTEFDLVQSVQQNADLR 119 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~---~~q~~l~~~~~~lk-------~~~~~l~~~l~~~~~~i~~~~~e~~~L~ 119 (327)
.+...+..+.+|...+...+ .....|.....=|+ +.+.++.++.+.+...+..+...+.+|.
T Consensus 17 aL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 17 ALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333 33334444444443 4445555555555555555555555553
No 97
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=51.12 E-value=66 Score=23.18 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385 37 KISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 37 ~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
.+..|+..+.++..... ..+..++..+..++..+.........-..+|..+=.-+..|.-+|+..
T Consensus 20 ~~~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 20 ESRACLERIQELEDLLA---KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444322 233344445555555555555554444455555555555555554443
No 98
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=50.94 E-value=64 Score=22.95 Aligned_cols=54 Identities=7% Similarity=0.107 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q 020385 266 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 319 (327)
Q Consensus 266 ~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~ 319 (327)
+.++..+...+-.+.-++..+...+......+......|..+...|..-|...+
T Consensus 34 d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~lle~s~ 87 (88)
T 2pjw_H 34 DPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQLMDRAA 87 (88)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667778888888899999999999999999999999999999999887654
No 99
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=50.92 E-value=59 Score=22.57 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ 110 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~ 110 (327)
.+.+.+++++.|...=.+|+.-+..|..=+..++.+...+...++.+.....+
T Consensus 19 ~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 19 EMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555444444333
No 100
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=50.83 E-value=23 Score=26.97 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH
Q 020385 92 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 138 (327)
Q Consensus 92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~ 138 (327)
..+..+.++.-.+...+..+..+.+.++.+.+-..+.|.-....|..
T Consensus 23 ~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmea 69 (130)
T 3cl3_D 23 KECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEA 69 (130)
T ss_dssp ----------------------------CTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555666666666655
No 101
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=50.00 E-value=46 Score=23.08 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 41 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTT 86 (327)
Q Consensus 41 l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~ 86 (327)
++..|.++..++.-.+..+.+|..-+......|..+......|..+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333333
No 102
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=49.79 E-value=63 Score=22.57 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 020385 32 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL 108 (327)
Q Consensus 32 ~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i 108 (327)
..+...+..|+..+.+...... ..+..++..+..++..+..+.........+|..+=.-+..|.-+|+.....+
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~---~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFA---VEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555556666666555432 3455666677777777777777777777777777777777777776655444
No 103
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=49.45 E-value=69 Score=22.92 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhcccccc
Q 020385 267 KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVT 322 (327)
Q Consensus 267 ~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~~~~ 322 (327)
.++.++...+..+.-++...-..+-.....+...+.+|..++..|-.-|...|..+
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lLE~~l~~~ 88 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLLEQQLQSI 88 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677788888888888888888889999999999999999998888776554
No 104
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.98 E-value=75 Score=23.17 Aligned_cols=30 Identities=23% Similarity=0.487 Sum_probs=13.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 22 EDLTRLDEQRSELEDKISQLNAEIAAYNEV 51 (327)
Q Consensus 22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~ 51 (327)
...+.+..++..+......+..++..+...
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 105
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.81 E-value=51 Score=21.19 Aligned_cols=32 Identities=9% Similarity=-0.101 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 87 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 87 ~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
+...+.....+...+......+..+..+|..+
T Consensus 21 ~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 21 CSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 106
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.55 E-value=76 Score=23.14 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=17.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Q 020385 286 VKESGAAKLQELASKAEEIVEKFQ 309 (327)
Q Consensus 286 ~~~~~e~e~~~~~~~~~~L~~~~~ 309 (327)
.......++..+..++.+|+..+.
T Consensus 69 a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 69 ARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888888888887753
No 107
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=48.49 E-value=1e+02 Score=24.65 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020385 256 ESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 315 (327)
Q Consensus 256 ~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l 315 (327)
+....++...++.+..+-. ..+.+|+.++..+..++..+......|.+++..|+..-
T Consensus 19 ~~alr~ia~l~r~~~~i~~---~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 19 EGALAEIATIDRKVGEIEA---QMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555554433 66788888999999999999999999999999998764
No 108
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.86 E-value=70 Score=22.49 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 285 (327)
Q Consensus 247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~ 285 (327)
.+..++.++..++.++...-+....+.+--..+..+|+-
T Consensus 36 ~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 566666666666666666655555555433444444433
No 109
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=47.47 E-value=76 Score=22.84 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 241 SEDATRAFENVKLEMESKRQDLEARQKKVEAVVT 274 (327)
Q Consensus 241 ~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ 274 (327)
..+.+..+..++.++..++.++...-+....+.+
T Consensus 39 ~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 72 (95)
T 3mov_A 39 KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLD 72 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446666666666666666665554444443
No 110
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=46.61 E-value=69 Score=22.06 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385 57 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 103 (327)
Q Consensus 57 ~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~ 103 (327)
.++..+-.++.+|...-+.++-....|=.+.+.+..++..+..++..
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555555666665555555555555555544444444444444433
No 111
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=46.18 E-value=70 Score=22.02 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 020385 67 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTE 105 (327)
Q Consensus 67 ~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~ 105 (327)
++|-.++.++...+..|..++..+..-++++..++..+.
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666555555555554443
No 112
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=45.96 E-value=94 Score=23.45 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385 159 TTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK 199 (327)
Q Consensus 159 ~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~ 199 (327)
.....+..+..++..+...+..+...+..+..+...+..+.
T Consensus 5 ~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445556666666666666666666666666555666664
No 113
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.66 E-value=1.9e+02 Score=26.33 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 146 AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 182 (327)
Q Consensus 146 ~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~ 182 (327)
.++.+......|...++.+.+..+++..+.+.+-++-
T Consensus 61 ~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~l 97 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELM 97 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444446666666667777777766666655543
No 114
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=43.14 E-value=91 Score=22.45 Aligned_cols=78 Identities=12% Similarity=0.243 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 39 SQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 39 ~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
..+...+..++..-......+..+.++...+...|..+... ...+...-...-.+.+.....+..+..+...|
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E-------~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAE-------AERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333334444444444444443333333 23333333333334444444444444444444
Q ss_pred hhhhh
Q 020385 119 RSKIV 123 (327)
Q Consensus 119 ~s~iv 123 (327)
..+..
T Consensus 80 ~~q~~ 84 (96)
T 3q8t_A 80 ENQMR 84 (96)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 115
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.56 E-value=77 Score=21.47 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020385 83 LRTTLNKLKEKTGALDE 99 (327)
Q Consensus 83 l~~~~~~lk~~~~~l~~ 99 (327)
+..+...|+.....|..
T Consensus 48 l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 116
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=42.15 E-value=42 Score=19.96 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=24.2
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAA 47 (327)
Q Consensus 16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~ 47 (327)
.+..+........++++.+..++..|+.+|..
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777888888888888888877753
No 117
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=42.14 E-value=1.2e+02 Score=25.51 Aligned_cols=52 Identities=12% Similarity=0.291 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhcccc
Q 020385 269 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLP 320 (327)
Q Consensus 269 ~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~~ 320 (327)
+......+..++.+++.+...+..++.+++.+|..+...+-.=...+.+.|+
T Consensus 28 ~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP 79 (225)
T 2e50_A 28 QQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIP 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccc
Confidence 3344466678888999999999999999999999988876555555555444
No 118
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.76 E-value=87 Score=21.84 Aligned_cols=43 Identities=5% Similarity=0.165 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 242 EDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTK 284 (327)
Q Consensus 242 ~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~ 284 (327)
.+.+..+..++.++..++.++...-+....+.+--..+..+|+
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3334466666666666666666665555555543334444443
No 119
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=41.16 E-value=67 Score=20.41 Aligned_cols=42 Identities=5% Similarity=0.151 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 60 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 101 (327)
Q Consensus 60 ~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l 101 (327)
.+|...+..|-.++..|......++......|.+..+...+|
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444444444443333
No 120
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.08 E-value=74 Score=22.33 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=16.1
Q ss_pred chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 49 (327)
Q Consensus 13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k 49 (327)
|.-.+.+-..+...+...+..+..++..+......++
T Consensus 37 RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 37 RRKALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333
No 121
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.88 E-value=45 Score=21.26 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020385 36 DKISQLN 42 (327)
Q Consensus 36 ~~~~~l~ 42 (327)
.++..|.
T Consensus 33 ~k~~~L~ 39 (53)
T 2yy0_A 33 EKYEAIV 39 (53)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 122
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.53 E-value=44 Score=21.31 Aligned_cols=20 Identities=5% Similarity=0.240 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELRQTIQDLN 77 (327)
Q Consensus 58 ~~~~l~~~~~eL~~~i~~l~ 77 (327)
.+..+..++.+|+.++..+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 123
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=38.99 E-value=1.1e+02 Score=22.04 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385 264 ARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELA 298 (327)
Q Consensus 264 ~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~ 298 (327)
.++|+++.+..++..+...+...+..|..-+.+++
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888888888888888888877666654
No 124
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=38.24 E-value=1.3e+02 Score=22.92 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 020385 58 LVQEVDAKVKELR 70 (327)
Q Consensus 58 ~~~~l~~~~~eL~ 70 (327)
.+.++++.+.-..
T Consensus 47 KVDQlqKRn~~HQ 59 (167)
T 4gkw_A 47 KVDQLQKRNVAHQ 59 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHH
Confidence 3444444433333
No 125
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.96 E-value=1e+02 Score=21.50 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERN 238 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~ 238 (327)
++.++.+...+-..+...+..+.++..
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333
No 126
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.63 E-value=1e+02 Score=21.36 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHH
Q 020385 92 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE 127 (327)
Q Consensus 92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe 127 (327)
.....|..+=..+...+..+..++..|+..+.+-|+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p~ 78 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 334444444444555555677778888888877774
No 127
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=36.80 E-value=7.5 Score=33.65 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHH
Q 020385 60 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 133 (327)
Q Consensus 60 ~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~l 133 (327)
.++..+..++..++..+......+..++..++.+..+....+.-...-..++...+.+++=....+|+.+++.+
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~~~~~~~~i~g~~ 217 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEYECEPGMVKGIH 217 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEECSCCTTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceeecccCcchhceee
Confidence 33334444444444444444444555555666666666666666666777888888888888888888765543
No 128
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=36.40 E-value=1.4e+02 Score=22.54 Aligned_cols=14 Identities=57% Similarity=0.705 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 020385 295 QELASKAEEIVEKF 308 (327)
Q Consensus 295 ~~~~~~~~~L~~~~ 308 (327)
..+...|..+...+
T Consensus 74 ~~l~k~Y~~~~keL 87 (119)
T 3etw_A 74 QELASKYEDALKKL 87 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 129
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.26 E-value=1.8e+02 Score=23.77 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 61 EVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 61 ~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
.+..+|..|.+++.........|..++
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql 50 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQI 50 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 130
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=36.09 E-value=89 Score=20.33 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=25.1
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 46 AAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 46 ~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
-+++..+...++.++++.+-++.+-.+|+-+.++...|..+-
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 344555555666667777666666666666665555554443
No 131
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.93 E-value=2.8e+02 Score=26.03 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 020385 30 QRSELEDKISQL 41 (327)
Q Consensus 30 ~~~~l~~~~~~l 41 (327)
.+.+|...+..+
T Consensus 101 ~LqeLe~~l~~l 112 (464)
T 1m1j_B 101 VLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 132
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.86 E-value=1.4e+02 Score=22.48 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=13.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 020385 282 KTKFVKESGAAKLQELASKAEEIVEKFQQY 311 (327)
Q Consensus 282 ~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y 311 (327)
.+..+-..+...+..+...-......|.+|
T Consensus 72 ~y~~l~k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 72 QYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 133
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=34.33 E-value=1.8e+02 Score=23.38 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 020385 267 KKVEAVVTEVDAITSKTKFVKESGAAKLQ 295 (327)
Q Consensus 267 ~~~~~~~~ei~~le~~i~~~~~~~e~e~~ 295 (327)
.++.++..++..+..++...+..+..++.
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666665555555554
No 134
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=34.14 E-value=88 Score=21.42 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=24.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385 55 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 104 (327)
Q Consensus 55 ~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~ 104 (327)
..+.+..+..+-++|...|..+...-.... .+..+|.++-.|.++|..+
T Consensus 15 ~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~l 63 (76)
T 1zhc_A 15 NNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSM 63 (76)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHH
Confidence 344555555555555555555444333223 5555555555555555543
No 135
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.89 E-value=3.1e+02 Score=25.96 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 020385 89 KLKEKTGALDEKFSQTEFDLVQSVQQNA 116 (327)
Q Consensus 89 ~lk~~~~~l~~~l~~~~~~i~~~~~e~~ 116 (327)
.++.+...+.++|..+...+..+..++.
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 136
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=33.04 E-value=2.4e+02 Score=24.35 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=2.2
Q ss_pred HHHHHH
Q 020385 87 LNKLKE 92 (327)
Q Consensus 87 ~~~lk~ 92 (327)
+..++.
T Consensus 46 le~lr~ 51 (273)
T 3s84_A 46 LRELQQ 51 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 137
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.67 E-value=1.3e+02 Score=21.24 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH
Q 020385 91 KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK 128 (327)
Q Consensus 91 k~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~ 128 (327)
......|..+=..+...+..+..++..|+..+.+-|+.
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 33444444444444555556677777777777777776
No 138
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.38 E-value=1.4e+02 Score=21.57 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=15.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 020385 18 RPIAEDLTRLDEQRSELEDKISQLNAEIAAY 48 (327)
Q Consensus 18 ~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~ 48 (327)
+.+......+...+..+..++..+...+..+
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555555555555555444
No 139
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=32.34 E-value=2.3e+02 Score=23.89 Aligned_cols=36 Identities=8% Similarity=0.223 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385 167 TLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND 204 (327)
Q Consensus 167 ~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~ 204 (327)
+.+++..+...+.-+..++. ..+..+...++..|.-
T Consensus 108 ~~~~~eelr~~L~P~~eel~--~~~~~~~eel~~~L~p 143 (243)
T 2a01_A 108 WQEEMELYRQKVEPLRAELQ--EGARQKLHELQEKLSP 143 (243)
T ss_dssp HHHHHHHHHTTHHHHHHHHH--HHHHHHHHHHCCSCCS
T ss_pred HHhhHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHh
Confidence 33444444444444444441 1122355555555544
No 140
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.22 E-value=97 Score=19.58 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385 88 NKLKEKTGALDEKFSQTEFDLVQSVQQNADL 118 (327)
Q Consensus 88 ~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L 118 (327)
..+-....+|..-|......|..+..++++|
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444443
No 141
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.03 E-value=86 Score=18.91 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 258 KRQDLEARQKKVEAVVTEVDAITSKTKFVKE 288 (327)
Q Consensus 258 ~~~el~~~~~~~~~~~~ei~~le~~i~~~~~ 288 (327)
+.+.++.+.+++......|..++.....+.+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554444444444444444444433
No 142
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=31.93 E-value=80 Score=21.64 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=38.1
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 020385 15 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ 74 (327)
Q Consensus 15 ~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~ 74 (327)
+.|.++.............+..+...|..+|..+...+.-.. .+..+.++--.|+.+|.
T Consensus 3 pe~~d~I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~ 61 (76)
T 1zhc_A 3 HEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIH 61 (76)
T ss_dssp HHHHHHHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHH
Confidence 456666666666677777888888888888888876544333 55555555444444444
No 143
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.02 E-value=3.2e+02 Score=25.18 Aligned_cols=16 Identities=0% Similarity=-0.060 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 020385 163 VYQKTLKKMSKQSAQM 178 (327)
Q Consensus 163 ~~~~~e~el~~~~~~l 178 (327)
.+......+..+.+.+
T Consensus 49 elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 49 QATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 144
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=30.96 E-value=1.3e+02 Score=20.52 Aligned_cols=45 Identities=11% Similarity=0.352 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 020385 64 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL 108 (327)
Q Consensus 64 ~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i 108 (327)
.++.++..+|..|+.....+-.+++.+......|-..|......+
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rl 65 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 366666677777777777777777777776666666665555444
No 145
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.88 E-value=61 Score=18.76 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhchhh
Q 020385 107 DLVQSVQQNADLRSK 121 (327)
Q Consensus 107 ~i~~~~~e~~~L~s~ 121 (327)
....+..++.+|++.
T Consensus 16 ~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 16 KLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 333344444444433
No 146
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.32 E-value=3.3e+02 Score=25.10 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 020385 63 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTE 105 (327)
Q Consensus 63 ~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~ 105 (327)
.+....+..++..|..........+..|......+..+|..+.
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~ 125 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLK 125 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444455555544333333333333333333333333333
No 147
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.08 E-value=72 Score=21.02 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 020385 37 KISQLNAEIAA 47 (327)
Q Consensus 37 ~~~~l~~~i~~ 47 (327)
++..|..++..
T Consensus 45 eN~~L~~ev~~ 55 (63)
T 2dgc_A 45 KNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 148
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.83 E-value=2.7e+02 Score=26.28 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=7.0
Q ss_pred CHHHHHHHHHH
Q 020385 125 SPEKLQRTLEE 135 (327)
Q Consensus 125 spe~lk~~le~ 135 (327)
.|+.++..+..
T Consensus 14 n~~~v~~~~~~ 24 (485)
T 3qne_A 14 DPEIIKASQKK 24 (485)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 67776666654
No 149
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.69 E-value=1.6e+02 Score=21.38 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=4.2
Q ss_pred HHHHHHHHhch
Q 020385 109 VQSVQQNADLR 119 (327)
Q Consensus 109 ~~~~~e~~~L~ 119 (327)
..+..||++|+
T Consensus 78 e~Lq~E~erLr 88 (100)
T 1go4_E 78 SQLQAECERLR 88 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 150
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.54 E-value=82 Score=17.91 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 26 RLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 26 ~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
.+.+++.++-.++..|+.++..++.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 151
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=28.72 E-value=3.3e+02 Score=24.66 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 020385 61 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV 112 (327)
Q Consensus 61 ~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~ 112 (327)
.+.....-|+..|..+......|.+.+..-....-.+..+++.++-.+..+.
T Consensus 202 ~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 202 RIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 3333444444444444444444444444444444444444444443333333
No 152
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.68 E-value=2.4e+02 Score=22.99 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 020385 29 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI 73 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i 73 (327)
++++.-.--+..|..+...+.........+++.++..+..+++..
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333334444555555554444444444555555555554444
No 153
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.43 E-value=2.7e+02 Score=23.57 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 020385 63 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 111 (327)
Q Consensus 63 ~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~ 111 (327)
..++.++..+|..|+..+..+-.++..+...-..|-..|......+.-+
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777777777777777777777777666666555433
No 154
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.32 E-value=1e+02 Score=18.56 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhh
Q 020385 83 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 121 (327)
Q Consensus 83 l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~ 121 (327)
|+..+..+|...-.+...-.++..-|..+..+|.+|...
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555566666666666543
No 155
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.30 E-value=1.5e+02 Score=20.67 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=19.8
Q ss_pred HhhhHHHHHHHHHHHHhchhhhh------cCHHHHHHHHHHHHHHHHHHHH
Q 020385 101 FSQTEFDLVQSVQQNADLRSKIV------QSPEKLQRTLEEKKSIREEARD 145 (327)
Q Consensus 101 l~~~~~~i~~~~~e~~~L~s~iv------~spe~lk~~le~l~~~~~~l~~ 145 (327)
++.+...|..+..++..|...+. ++|+++......+......+..
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444432 3455555554444443333333
No 156
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.79 E-value=3.6e+02 Score=24.78 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 27 LDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 27 l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
+-.+++.+..+...|+++.+.+-.
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk 56 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAK 56 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 157
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.36 E-value=1.6e+02 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020385 30 QRSELEDKISQLNAEIAAYNEVR 52 (327)
Q Consensus 30 ~~~~l~~~~~~l~~~i~~~k~~~ 52 (327)
.+..+...|..|+.++..+...+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544
No 158
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=27.29 E-value=2.4e+02 Score=22.58 Aligned_cols=120 Identities=13% Similarity=0.144 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc----------hhhhhhHH
Q 020385 142 EARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLN----------DDVVLDKS 211 (327)
Q Consensus 142 ~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~----------~~~~~~k~ 211 (327)
.+..+-..+..+.+.+....+.|+.+..+|.....-++.-..-+.-.++ .+ .++++.+ ....++..
T Consensus 18 ~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~Fee---Q~-~~qer~~~~~~~~f~~e~~~~E~~~ 93 (170)
T 3l4q_C 18 QLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEE---QG-QTQEKSSKEYLERFRREGNEKEMQR 93 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHSSSTTGGGSSSSSCCCSSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHhHHHHHHHHhhcCHHHHHH
Confidence 3334444444555888888899999999998888777776666666654 33 3333221 11111222
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKV 269 (327)
Q Consensus 212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~ 269 (327)
+.....-+..++..+......+.+....... ..-.+..++.++++++-...+..
T Consensus 94 l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~----~~relERemnsLKPeL~qL~K~r 147 (170)
T 3l4q_C 94 ILLNSERLKSRIAEIHESRTKLEQELRAQAS----DNREIDKRMNSLKPDLMQLRKIR 147 (170)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCHHHHHHHHHH
Confidence 4444445555555555555554444444444 33445555566666655554433
No 159
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.27 E-value=1.5e+02 Score=20.66 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=15.9
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 14 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 49 (327)
Q Consensus 14 ~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k 49 (327)
.-.+.+-..+.+.+...+..+..++..|......++
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433
No 160
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.24 E-value=91 Score=17.68 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=11.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhchh
Q 020385 98 DEKFSQTEFDLVQSVQQNADLRS 120 (327)
Q Consensus 98 ~~~l~~~~~~i~~~~~e~~~L~s 120 (327)
-++++.+-.....+..++.+|++
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444455555555543
No 161
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.40 E-value=1.9e+02 Score=21.10 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 020385 27 LDEQRSELEDKIS 39 (327)
Q Consensus 27 l~~~~~~l~~~~~ 39 (327)
+.-+++-|.+...
T Consensus 28 l~YqVdlLKD~LE 40 (103)
T 4h22_A 28 FMYQVDTLKDMLL 40 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 162
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.03 E-value=1.1e+02 Score=18.35 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 020385 65 KVKELRQTIQ 74 (327)
Q Consensus 65 ~~~eL~~~i~ 74 (327)
.+.+|+.++.
T Consensus 18 ~naeLEervs 27 (42)
T 2oqq_A 18 KNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 163
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=25.57 E-value=1.1e+02 Score=21.94 Aligned_cols=19 Identities=11% Similarity=0.080 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 020385 224 EQLDELQQQLEKERNLKSE 242 (327)
Q Consensus 224 ~~l~~~l~~~~e~~~~~~~ 242 (327)
+.++..+-.+......+++
T Consensus 53 q~Ir~tvyeLE~~h~kmKq 71 (92)
T 3vp9_A 53 QQIRNTVYERELTHRKMKD 71 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334433333333333
No 164
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.23 E-value=1.7e+02 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 60 QEVDAKVKELRQTIQDLNKHQVSLRTT 86 (327)
Q Consensus 60 ~~l~~~~~eL~~~i~~l~~~q~~l~~~ 86 (327)
..+..++..+..++...+.....|...
T Consensus 27 ~~~~~~~~~~~~~l~~~~~~rr~l~n~ 53 (412)
T 3u06_A 27 EQQAAELETCKEQLFQSNMERKELHNT 53 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444433333333333333333
No 165
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.87 E-value=1.8e+02 Score=20.45 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 57 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 87 (327)
Q Consensus 57 ~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~ 87 (327)
..+..|..+|..|..+|..|......|..-+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556555555555555554433
No 166
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.49 E-value=2.5e+02 Score=23.12 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q 020385 11 DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDA 64 (327)
Q Consensus 11 ee~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~ 64 (327)
|.|.-.+.+-..+.+.|...+..+..+++.|......++.-...-.....-+..
T Consensus 104 E~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~ 157 (209)
T 2wvr_A 104 EKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 167
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.15 E-value=2e+02 Score=20.62 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=12.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 22 EDLTRLDEQRSELEDKISQLNAEIAAYNE 50 (327)
Q Consensus 22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~ 50 (327)
...+.+++.+-.+..++..+..-+-.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~ri~~aig~~d~ 34 (114)
T 2xzr_A 6 DKIEEILSKIYHIENEIARIKKLIGAIDG 34 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhhhhH
Confidence 34444444444444444444444443333
No 168
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.11 E-value=1.3e+02 Score=18.30 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=12.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 020385 19 PIAEDLTRLDEQRSELEDKISQLNAEI 45 (327)
Q Consensus 19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i 45 (327)
++....+.+..++..+..+.+.|...+
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 169
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.64 E-value=1.8e+02 Score=19.98 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 57 PLVQEVDAKVKELRQTIQDLNKHQVSLR 84 (327)
Q Consensus 57 ~~~~~l~~~~~eL~~~i~~l~~~q~~l~ 84 (327)
..+..|..+|..|..+|..|......|.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666665555554443
No 170
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.20 E-value=2.2e+02 Score=20.80 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 020385 30 QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 109 (327)
Q Consensus 30 ~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~ 109 (327)
..-.|-..++....++...+......+....+|...+..+. ..-..+...-...+..++.+...-..++..++..+.
T Consensus 2 eHi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~ 78 (107)
T 2no2_A 2 SHADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLE 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhchhhh
Q 020385 110 QSVQQNADLRSKI 122 (327)
Q Consensus 110 ~~~~e~~~L~s~i 122 (327)
.+.++...+.+++
T Consensus 79 ~~~~~~~~l~~~~ 91 (107)
T 2no2_A 79 TSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 171
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.17 E-value=1.5e+02 Score=18.74 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=34.8
Q ss_pred HHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELE--DKISQLNAEIAAYNEVRERELP--LVQEVDAKVKELRQTIQ 74 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~--~~~~~l~~~i~~~k~~~~~~e~--~~~~l~~~~~eL~~~i~ 74 (327)
+......+.+++..+- ..+..|...+++++.++.+.-. ++..+..++..|+..|.
T Consensus 7 leekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 7 LEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3344444444444443 3467788888888887766543 67777777777766664
No 172
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=23.10 E-value=2.7e+02 Score=21.69 Aligned_cols=58 Identities=5% Similarity=0.034 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 29 EQRSELEDKISQLNAEIAAYNEVRERE---LPLVQEVDAKVKELRQTIQDLNKHQVSLRTT 86 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i~~~k~~~~~~---e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~ 86 (327)
..+......+..++.+++....++... .|.+.++...+..+..........+.....-
T Consensus 69 ~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A 129 (158)
T 3tul_A 69 KKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDA 129 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555544 4577777777777777776666655444333
No 173
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.07 E-value=1.4e+02 Score=19.53 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020385 59 VQEVDAKVKELRQTIQDL 76 (327)
Q Consensus 59 ~~~l~~~~~eL~~~i~~l 76 (327)
+..+..++..|..++..|
T Consensus 39 v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 39 VEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555444444
No 174
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=23.03 E-value=2e+02 Score=21.62 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020385 268 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV 305 (327)
Q Consensus 268 ~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~ 305 (327)
++.+++.++...+..+..+++-|.+.+......+..|-
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~Ll 42 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLT 42 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566678888888999999999999988888777664
No 175
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=22.68 E-value=1.9e+02 Score=20.62 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 020385 274 TEVDAITSKTKFVKESGAAKLQELASKA 301 (327)
Q Consensus 274 ~ei~~le~~i~~~~~~~e~e~~~~~~~~ 301 (327)
..+-.++..=..++..++.||..+..+.
T Consensus 57 ~tvyeLE~~h~kmKq~YEeEI~rLr~eL 84 (92)
T 3vp9_A 57 NTVYERELTHRKMKDAYEEEIKHLKLGL 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566777777776665544
No 176
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=22.43 E-value=4.3e+02 Score=23.86 Aligned_cols=49 Identities=8% Similarity=0.239 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385 74 QDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122 (327)
Q Consensus 74 ~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i 122 (327)
..+......|..++..+...+..|...|.......-++..++..|+|-+
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 3444555667777777777777777777777777777777777776544
No 177
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.87 E-value=3.1e+02 Score=21.96 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 020385 35 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQD 75 (327)
Q Consensus 35 ~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~ 75 (327)
..++.....++..+-....-++..+..+.+++.+|++++..
T Consensus 91 r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555666666666666655553
No 178
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.85 E-value=4.9e+02 Score=24.30 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=25.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 236 ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 285 (327)
Q Consensus 236 ~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~ 285 (327)
...++-.++..++.-++..+..-...+..++.-++..+.+|..|+..|+-
T Consensus 108 ~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 108 NYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555554455555555555555555555555544
No 179
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=21.46 E-value=2.2e+02 Score=20.11 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=22.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 020385 20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVK 67 (327)
Q Consensus 20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~ 67 (327)
+....+.-.-...++-.+-..|+.-+..++..-..-...+.+++..+.
T Consensus 9 le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 9 LENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555555555555544433334444444333
No 180
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.40 E-value=3.7e+02 Score=22.72 Aligned_cols=57 Identities=14% Similarity=0.293 Sum_probs=34.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 020385 18 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ 74 (327)
Q Consensus 18 ~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~ 74 (327)
..+....+-+..+..-...+|.++..+|+.+...+......+..++.+=..|+..|.
T Consensus 159 ~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~ 215 (242)
T 3uux_B 159 QTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLK 215 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345556666666777777777777777777777655444444444444444444443
No 181
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=21.16 E-value=1.1e+02 Score=16.70 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 020385 86 TLNKLKEKTGALDEKFSQTEFDLVQSV 112 (327)
Q Consensus 86 ~~~~lk~~~~~l~~~l~~~~~~i~~~~ 112 (327)
++..+|++...+..++...+|.+..+.
T Consensus 3 elaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777776554
No 182
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.82 E-value=91 Score=24.54 Aligned_cols=6 Identities=0% Similarity=-0.180 Sum_probs=2.1
Q ss_pred HHHHHH
Q 020385 30 QRSELE 35 (327)
Q Consensus 30 ~~~~l~ 35 (327)
++..+.
T Consensus 33 ~v~~l~ 38 (171)
T 2zvf_A 33 TVERFF 38 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 183
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.74 E-value=5.2e+02 Score=24.14 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385 142 EARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILE 183 (327)
Q Consensus 142 ~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~ 183 (327)
.+...++.+......+...+..+.+..+++..+.+.+-++-.
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk 96 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILK 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 334455555555577777777777777777777776655533
No 184
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.58 E-value=2.2e+02 Score=19.72 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=10.0
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHH
Q 020385 17 LRPIAEDLTRLDEQRSELEDKISQLN 42 (327)
Q Consensus 17 ~~~l~~~~e~l~~~~~~l~~~~~~l~ 42 (327)
+.+-..+...+...+.++..++..|.
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333333333333
No 185
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=20.45 E-value=2.5e+02 Score=20.43 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020385 280 TSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 315 (327)
Q Consensus 280 e~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l 315 (327)
++.|.++.....+--..+....+.|.++++-|..+|
T Consensus 12 Q~~In~lq~~~~klE~dlq~ki~slisSiEw~l~Sm 47 (110)
T 1lj2_A 12 QAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSM 47 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444555566666777777776665
No 186
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.22 E-value=1.6e+02 Score=24.87 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 020385 29 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69 (327)
Q Consensus 29 ~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL 69 (327)
.+++.+...++.|+..++++...-...+..+..+...+.+|
T Consensus 6 sRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 6 SRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443332333333333333333
Done!