Query 020386
Match_columns 327
No_of_seqs 136 out of 1289
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:19:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 1.1E-43 2.4E-48 339.6 21.3 292 6-324 145-437 (437)
2 KOG1304 Amino acid transporter 100.0 5.4E-42 1.2E-46 323.6 21.2 267 21-321 177-449 (449)
3 PTZ00206 amino acid transporte 100.0 3E-39 6.5E-44 315.5 18.6 277 25-322 184-465 (467)
4 PLN03074 auxin influx permease 100.0 6E-38 1.3E-42 305.7 22.2 271 21-326 168-456 (473)
5 KOG4303 Vesicular inhibitory a 100.0 8.6E-37 1.9E-41 274.2 -1.4 284 21-326 236-519 (524)
6 PF01490 Aa_trans: Transmembra 100.0 9.4E-37 2E-41 293.4 -2.6 282 20-318 121-408 (409)
7 KOG1305 Amino acid transporter 100.0 7.6E-31 1.7E-35 250.0 20.7 275 26-325 131-409 (411)
8 COG0814 SdaC Amino acid permea 99.7 7.8E-16 1.7E-20 148.4 19.4 266 21-315 126-409 (415)
9 TIGR00837 araaP aromatic amino 99.1 4.8E-09 1E-13 100.4 18.0 233 24-289 115-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.7 4.5E-06 9.7E-11 80.3 21.5 170 95-291 184-367 (394)
11 PRK15132 tyrosine transporter 98.3 1.8E-05 3.8E-10 76.2 15.4 169 97-290 183-363 (403)
12 PRK10483 tryptophan permease; 98.3 0.00012 2.7E-09 70.4 19.8 169 96-289 193-373 (414)
13 PRK09664 tryptophan permease T 98.2 0.00021 4.5E-09 68.8 19.5 169 96-289 194-374 (415)
14 TIGR00814 stp serine transport 98.0 0.00019 4.2E-09 69.1 14.6 178 95-286 186-376 (397)
15 PRK11021 putative transporter; 97.9 0.0053 1.1E-07 59.3 23.2 55 95-152 177-231 (410)
16 TIGR03813 put_Glu_GABA_T putat 97.9 0.0032 6.8E-08 62.1 21.4 54 103-159 202-255 (474)
17 TIGR03810 arg_ornith_anti argi 97.9 0.0032 7E-08 62.0 21.3 59 96-158 196-254 (468)
18 PRK13629 threonine/serine tran 97.9 0.0026 5.7E-08 61.6 20.0 177 96-286 210-412 (443)
19 PF13520 AA_permease_2: Amino 97.8 0.0038 8.2E-08 60.4 20.2 59 97-160 190-248 (426)
20 PRK10746 putative transport pr 97.8 0.0067 1.4E-07 59.7 21.8 60 95-157 200-259 (461)
21 PRK10644 arginine:agmatin anti 97.7 0.012 2.5E-07 57.6 22.3 56 96-154 192-247 (445)
22 PRK10655 potE putrescine trans 97.7 0.017 3.7E-07 56.2 23.3 56 96-154 190-245 (438)
23 PRK10435 cadB lysine/cadaverin 97.7 0.019 4E-07 56.1 23.1 61 94-157 186-246 (435)
24 PRK15049 L-asparagine permease 97.6 0.011 2.5E-07 58.7 21.3 61 95-158 220-280 (499)
25 PRK11357 frlA putative fructos 97.6 0.011 2.4E-07 57.8 20.7 56 95-153 195-250 (445)
26 KOG1287 Amino acid transporter 97.6 0.0046 1E-07 60.2 17.4 251 18-290 127-387 (479)
27 TIGR00909 2A0306 amino acid tr 97.6 0.014 3E-07 56.7 20.3 57 96-155 196-252 (429)
28 PRK10197 gamma-aminobutyrate t 97.6 0.021 4.6E-07 55.9 21.7 55 95-152 181-235 (446)
29 TIGR00905 2A0302 transporter, 97.5 0.033 7.2E-07 54.9 22.5 59 95-157 199-257 (473)
30 TIGR00906 2A0303 cationic amin 97.5 0.012 2.6E-07 59.3 19.5 57 95-154 231-287 (557)
31 PRK10249 phenylalanine transpo 97.4 0.039 8.5E-07 54.2 21.8 55 96-153 210-264 (458)
32 TIGR00911 2A0308 L-type amino 97.4 0.017 3.6E-07 57.4 19.4 61 94-157 234-294 (501)
33 PRK11387 S-methylmethionine tr 97.4 0.047 1E-06 53.8 22.0 61 95-158 206-266 (471)
34 PRK10580 proY putative proline 97.4 0.051 1.1E-06 53.3 22.0 54 96-152 200-253 (457)
35 TIGR00913 2A0310 amino acid pe 97.3 0.14 3E-06 50.5 24.2 56 94-152 196-251 (478)
36 TIGR00908 2A0305 ethanolamine 97.3 0.044 9.6E-07 53.4 20.2 54 95-151 191-244 (442)
37 PRK10238 aromatic amino acid t 97.2 0.035 7.5E-07 54.5 18.7 51 96-149 201-251 (456)
38 TIGR00910 2A0307_GadC glutamat 97.2 0.083 1.8E-06 52.7 21.4 50 98-150 197-246 (507)
39 PRK11049 D-alanine/D-serine/gl 97.2 0.072 1.6E-06 52.5 20.6 57 96-155 212-268 (469)
40 PRK15238 inner membrane transp 97.1 0.15 3.2E-06 50.7 22.4 54 96-152 212-265 (496)
41 TIGR00907 2A0304 amino acid pe 97.0 0.14 3E-06 50.5 20.7 60 96-158 218-277 (482)
42 TIGR01773 GABAperm gamma-amino 97.0 0.15 3.3E-06 49.9 20.7 60 96-158 202-261 (452)
43 PRK10836 lysine transporter; P 96.9 0.29 6.3E-06 48.5 21.8 59 96-157 206-264 (489)
44 COG1113 AnsP Gamma-aminobutyra 96.8 0.065 1.4E-06 51.8 15.9 181 91-288 199-388 (462)
45 TIGR00930 2a30 K-Cl cotranspor 96.4 1.4 3E-05 47.4 24.0 53 97-152 282-334 (953)
46 COG0531 PotE Amino acid transp 96.2 1.4 3.1E-05 42.8 22.7 61 96-159 202-262 (466)
47 TIGR03428 ureacarb_perm permea 95.7 2.3 5E-05 41.9 24.8 60 96-158 214-273 (475)
48 TIGR00912 2A0309 spore germina 94.8 2.3 4.9E-05 40.2 16.7 57 102-162 186-242 (359)
49 PRK11375 allantoin permease; P 93.9 7.4 0.00016 38.6 20.0 63 95-161 227-294 (484)
50 PF00324 AA_permease: Amino ac 92.8 0.38 8.2E-06 47.4 7.6 65 94-161 199-263 (478)
51 KOG1286 Amino acid transporter 92.4 6.4 0.00014 39.7 15.7 56 94-152 231-286 (554)
52 KOG1289 Amino acid transporter 91.9 10 0.00022 37.8 16.0 73 93-168 250-322 (550)
53 TIGR02358 thia_cytX probable h 90.9 16 0.00034 35.2 17.9 45 112-160 190-234 (386)
54 COG0833 LysP Amino acid transp 88.7 28 0.00061 34.8 17.7 120 21-148 158-284 (541)
55 TIGR00800 ncs1 NCS1 nucleoside 82.4 51 0.0011 32.1 17.7 49 109-161 222-274 (442)
56 KOG2082 K+/Cl- cotransporter K 79.0 23 0.0005 36.9 10.8 69 244-314 551-622 (1075)
57 PF00474 SSF: Sodium:solute sy 67.8 1E+02 0.0022 29.4 12.3 32 24-55 121-152 (406)
58 PF03845 Spore_permease: Spore 65.3 49 0.0011 30.6 9.3 63 95-161 175-237 (320)
59 KOG4812 Golgi-associated prote 61.8 27 0.00059 31.0 6.2 75 245-324 162-253 (262)
60 TIGR00796 livcs branched-chain 58.4 1.8E+02 0.0038 28.0 18.3 34 247-286 314-347 (378)
61 PRK11017 codB cytosine permeas 56.4 1.9E+02 0.0042 27.8 15.1 46 110-159 199-244 (404)
62 PRK13183 psbN photosystem II r 56.0 13 0.00028 24.1 2.4 31 131-161 4-34 (46)
63 COG1914 MntH Mn2+ and Fe2+ tra 52.4 1.3E+02 0.0029 29.3 9.9 55 235-289 324-378 (416)
64 CHL00020 psbN photosystem II p 48.8 14 0.00031 23.5 1.8 28 134-161 4-31 (43)
65 PF02468 PsbN: Photosystem II 46.5 17 0.00037 23.2 1.9 28 134-161 4-31 (43)
66 PRK09442 panF sodium/panthothe 41.4 3.6E+02 0.0077 26.6 23.2 35 121-159 263-300 (483)
67 PF00209 SNF: Sodium:neurotran 33.4 5E+02 0.011 25.9 17.9 35 98-136 252-287 (523)
68 COG3949 Uncharacterized membra 30.4 4.8E+02 0.01 24.7 15.5 29 110-142 194-222 (349)
69 PRK10484 putative transporter; 28.2 6.1E+02 0.013 25.3 21.5 31 129-159 274-307 (523)
70 cd08765 Cyt_b561_CYBRD1 Verteb 27.1 2.3E+02 0.005 23.5 6.2 69 128-200 43-111 (153)
71 PF05805 L6_membrane: L6 membr 27.1 1.6E+02 0.0034 25.5 5.3 25 265-289 49-73 (195)
72 TIGR02119 panF sodium/pantothe 26.6 6.1E+02 0.013 24.7 22.3 27 129-155 266-292 (471)
73 PRK01844 hypothetical protein; 26.3 1.5E+02 0.0032 21.2 4.2 26 301-326 8-33 (72)
74 PHA02680 ORF090 IMV phosphoryl 24.8 1.7E+02 0.0036 21.8 4.3 56 99-158 15-70 (91)
75 TIGR02230 ATPase_gene1 F0F1-AT 23.0 3.4E+02 0.0073 20.8 5.9 15 301-315 79-93 (100)
76 PRK11026 ftsX cell division AB 22.1 4.5E+02 0.0099 24.3 7.9 26 300-325 281-306 (309)
77 TIGR00964 secE_bact preprotein 21.1 1.5E+02 0.0033 19.7 3.4 29 114-142 5-34 (55)
78 PRK12488 acetate permease; Pro 21.1 8.6E+02 0.019 24.5 23.3 28 28-55 185-212 (549)
79 TIGR00439 ftsX putative protei 20.8 3.5E+02 0.0077 25.0 6.9 26 300-325 281-306 (309)
80 KOG1619 Cytochrome b [Energy p 20.7 6.2E+02 0.013 22.7 8.7 94 95-199 58-151 (245)
81 PLN02680 carbon-monoxide oxyge 20.4 6.2E+02 0.013 22.6 10.8 93 95-199 50-142 (232)
82 PRK00523 hypothetical protein; 20.2 2.6E+02 0.0057 20.0 4.4 25 301-325 9-33 (72)
83 cd08762 Cyt_b561_CYBASC3 Verte 20.1 5.5E+02 0.012 21.9 10.6 96 95-199 38-133 (179)
84 cd08766 Cyt_b561_ACYB-1_like P 20.1 3.1E+02 0.0067 22.4 5.6 68 129-200 37-104 (144)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=339.61 Aligned_cols=292 Identities=37% Similarity=0.637 Sum_probs=251.7
Q ss_pred cccceecCCCCCCCCCCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCC
Q 020386 6 KSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGV 85 (327)
Q Consensus 6 ~~~~~~~~~~~~~c~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 85 (327)
...|.++..|.+++..+.+.|+++++++++|++++||+++++|+|..++++++.|..+.+++++.++.+.+..+.+...
T Consensus 145 ~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~- 223 (437)
T KOG1303|consen 145 NLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD- 223 (437)
T ss_pred HHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc-
Confidence 3345555555444356678999999999999999999999999999999999999999999888887665322111111
Q ss_pred CCCChhhHHHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCccccc
Q 020386 86 PTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNL 165 (327)
Q Consensus 86 ~~~~~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~i 165 (327)
..+... .|+++|+++|||++|..+||||++||+| ++|+|++..++.+++.+|+.+++.||++|||++++++
T Consensus 224 --~~~~~~---~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~i 294 (437)
T KOG1303|consen 224 --LGTIPT---VFTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNI 294 (437)
T ss_pred --CCCCcc---hhhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhh
Confidence 111111 1899999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHH
Q 020386 166 LTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAY 245 (327)
Q Consensus 166 l~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~ 245 (327)
+.|++ +|.|+...+++++.+|++.+|+++.+|.++.+|+....+.++ +. + +....|...|+.+
T Consensus 295 l~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~------------~-~~~~~R~~~Rt~~ 357 (437)
T KOG1303|consen 295 LLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FK------------K-RSLVLRLLVRTFF 357 (437)
T ss_pred hhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--cc------------c-cccceeeehhhHH
Confidence 99996 589999999999999999999999999999999988765321 10 0 1246899999999
Q ss_pred HHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 020386 246 VVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTF-SFICLLVTIIGLIGSIEGLISA 324 (327)
Q Consensus 246 v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~~~~~~-~~~g~i~~v~gt~~si~~li~~ 324 (327)
++.+.++|+.+|+|+++++++||+...++++++|++||+.++|+++++.+|+.++.+ .++|.++++...++++++++.+
T Consensus 358 v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 358 VAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999988888 7999999999999999998864
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-42 Score=323.60 Aligned_cols=267 Identities=16% Similarity=0.230 Sum_probs=229.7
Q ss_pred CCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHH
Q 020386 21 YGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQA 100 (327)
Q Consensus 21 ~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (327)
.+.+.|+.+....++|++++||++.|+.+|++|++++++..++ ..++..++.+. .++ .+...+..+++..
T Consensus 177 ~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~i----i~~y~~~~~~~---~~~---~~~~~~~~~~~lf 246 (449)
T KOG1304|consen 177 LSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAI----IMYYLVQDLPP---TSD---LPAVTGWSGLPLF 246 (449)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHH----HHHHHHhccCC---ccc---cccccchhhhHHH
Confidence 6889999999999999999999999999999999988874333 23333443321 111 1222233477888
Q ss_pred HHHHHhhccCchhhHHHHhhcCCCCccccchh---hHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHH
Q 020386 101 LGDIAFAYPYSIILLEIQDTLKSPPPENKTMK---MASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWL 177 (327)
Q Consensus 101 ~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~---~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~ 177 (327)
+|+.+|||+|++++.|++|+||+| ++|. +++..++.+++++|..+|++||++||+|+++.|+.|+| + +++
T Consensus 247 ~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l 319 (449)
T KOG1304|consen 247 FGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EIL 319 (449)
T ss_pred HHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHH
Confidence 999999999999999999999999 9999 99999999999999999999999999999999999999 4 899
Q ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhcc
Q 020386 178 IDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFP 257 (327)
Q Consensus 178 ~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP 257 (327)
.+.+++++++.++.+|||+.+|+.+.+|+.+.+|..+. +.++....+|+.++++++.+|+++|
T Consensus 320 ~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iP 382 (449)
T KOG1304|consen 320 SQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVP 382 (449)
T ss_pred HHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999877653211 1247788899999999999999999
Q ss_pred chHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020386 258 YFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGA---WTRKWIVLRTFSFICLLVTIIGLIGSIEGL 321 (327)
Q Consensus 258 ~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~---~~~~~~~~~~~~~~g~i~~v~gt~~si~~l 321 (327)
+++++++|+||++++.+.+++|+++++..+.++. +.++++.|..++++|++..+.|||.|+.++
T Consensus 383 nL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 383 NLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred cHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999999999999965443 345777889999999999999999999864
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3e-39 Score=315.55 Aligned_cols=277 Identities=15% Similarity=0.162 Sum_probs=208.2
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccc--cCCCCCChhhHHHHHHHHHH
Q 020386 25 KHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSI--AGVPTANLADKLWLAFQALG 102 (327)
Q Consensus 25 ~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g 102 (327)
.+.+++.++++|++++|++++|+|+|.+|.++.+...+.+++....++..+...+.+. .+..+........+++.++|
T Consensus 184 ~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~alg 263 (467)
T PTZ00206 184 LTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLG 263 (467)
T ss_pred eeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhh
Confidence 3445667788999999999999999999876655433333223332222111000000 00000000111135789999
Q ss_pred HHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHHHHHH
Q 020386 103 DIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLAN 182 (327)
Q Consensus 103 i~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~~~ 182 (327)
+++|||.||.+.+|+++|||+| +.+||.+++..++.++.++|..+|++||++||++++++++.|+++ ..+....+++
T Consensus 264 i~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~ 340 (467)
T PTZ00206 264 VFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGF 340 (467)
T ss_pred HHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHH
Confidence 9999999999999999999997 459999999999999999999999999999999999999999942 2344566788
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccchHHH
Q 020386 183 ACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQV 262 (327)
Q Consensus 183 ~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~~~~v 262 (327)
+++.+.+.++||++.+|+|+.+++.+..+ ..+ .+ .+++...+..++++++++|+++|+++.+
T Consensus 341 ~~~~~~v~~sypL~~~p~r~~i~~~~~~~--~~~---------~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~v 402 (467)
T PTZ00206 341 VGVLVKLFVSYALLGMACRNALYDVIGWD--ARK---------VA-------FWKHCIAVVTLSVVMLLCGLFIPKINTV 402 (467)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhCCC--ccc---------Cc-------hhhHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 88889999999999999999998876322 111 01 2445556677777889999999999999
Q ss_pred HHHHhhhhhhhHHHHhhHHhhHhhc--ccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020386 263 LGVLGALNFWPLAIYFPVEMYFVQK--KIGA-WTRKWIVLRTFSFICLLVTIIGLIGSIEGLI 322 (327)
Q Consensus 263 ~~l~Ga~~~~~l~fi~P~l~yl~~~--k~~~-~~~~~~~~~~~~~~g~i~~v~gt~~si~~li 322 (327)
++++||++++.++|++|+++|++.. +.++ ...+|..+++++++|++.+++||++|+++.+
T Consensus 403 l~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 403 LGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9999999999999999999999842 2122 2224556788999999999999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=6e-38 Score=305.71 Aligned_cols=271 Identities=19% Similarity=0.216 Sum_probs=215.8
Q ss_pred CCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHH
Q 020386 21 YGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQA 100 (327)
Q Consensus 21 ~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (327)
.+.+.|+++++++++|++++|++++++++|.+|..+++.+.+.++..++.++.. ++.+ .+...+....+.+
T Consensus 168 ~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~-~~~~~~~~~~f~~ 238 (473)
T PLN03074 168 LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVK-HSGPTKLVLYFTG 238 (473)
T ss_pred cCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCC-CCCchhHHHHHHH
Confidence 577899999999999999999999999999999887665433333333322211 1110 0112344467888
Q ss_pred HHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCccc--ccccccCCCCchHHH
Q 020386 101 LGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPG--NLLTGFGFYEPYWLI 178 (327)
Q Consensus 101 ~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~--~il~n~~~~~~~~~~ 178 (327)
+++++|||+||..+||+++||||| ++|+++...++..++.+|..+|+.||++|||++++ +.+.|+| ++ ...
T Consensus 239 ~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~-~~~ 311 (473)
T PLN03074 239 ATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RS-GWR 311 (473)
T ss_pred HHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cc-hHH
Confidence 899999999999999999999999 99999999999999999999999999999999864 5677787 23 346
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccc
Q 020386 179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY 258 (327)
Q Consensus 179 ~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~ 258 (327)
+++++++.++++.+|+++..|+.+.+|+....+ +. +....|...|+.++++++++|+.+|+
T Consensus 312 ~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~-----------------k~~~~r~~~R~~lv~~~~~iA~~IP~ 372 (473)
T PLN03074 312 DAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DT-----------------KSICLRALARLPVVVPIWFLAIIFPF 372 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--cc-----------------ccHHHHHHHHHHHHHHHHHHHHHccc
Confidence 788999999999999999999999999875321 10 12367889999999999999999999
Q ss_pred hHHHHHHHhhhhhhhHHHHhhHHhhHhhcccC-------------chhHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 020386 259 FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIG-------------AWTRK--WIVLRTFSFICLLV-TIIGLIGSIEGLI 322 (327)
Q Consensus 259 ~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~-------------~~~~~--~~~~~~~~~~g~i~-~v~gt~~si~~li 322 (327)
|+++++|+||++++.++|++|+++|++.++++ .+.++ .+.|+.+++++.++ .+.|+|+|+++++
T Consensus 373 fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii 452 (473)
T PLN03074 373 FGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFV 452 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHH
Confidence 99999999999999999999999999875332 11122 25677777765566 4799999999999
Q ss_pred hhhc
Q 020386 323 SAKL 326 (327)
Q Consensus 323 ~~~~ 326 (327)
++++
T Consensus 453 ~~~~ 456 (473)
T PLN03074 453 RQID 456 (473)
T ss_pred Hhhh
Confidence 9875
No 5
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-37 Score=274.16 Aligned_cols=284 Identities=19% Similarity=0.216 Sum_probs=241.8
Q ss_pred CCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHH
Q 020386 21 YGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQA 100 (327)
Q Consensus 21 ~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (327)
++++.|+++.++.++|.+++|+++..+-+|++.++..++...+++.+|+....+....+- ....+..+++.+
T Consensus 236 vd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv--------~Fsidi~~fPis 307 (524)
T KOG4303|consen 236 VDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKV--------TFSIDINTFPIS 307 (524)
T ss_pred ccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeE--------EEEEEcccCceE
Confidence 789999999999999999999999999999999999999888888888876544443221 223334467889
Q ss_pred HHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHHHH
Q 020386 101 LGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180 (327)
Q Consensus 101 ~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~ 180 (327)
+|+++|+|..|..+|+++.+|++| ++|...+.++.+..+++...+|..||++||+++++.|.+|+| ......+
T Consensus 308 vG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~ 380 (524)
T KOG4303|consen 308 VGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKIL 380 (524)
T ss_pred EEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhh
Confidence 999999999999999999999999 999999999999999999999999999999999999999998 4446778
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccchH
Q 020386 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFN 260 (327)
Q Consensus 181 ~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~~~ 260 (327)
+|+.++...+.|||+-.+...+.+|+-++...|+..|+.. |. | +-+.+.|.+.+|..+++.+.++|+++|+|.
T Consensus 381 VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpsc-ys---~---Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~ 453 (524)
T KOG4303|consen 381 VNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSC-YS---P---DGSLKEWGLTLRIILVVFTLLMAISVPHFV 453 (524)
T ss_pred hhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCcee-eC---C---CcchhhheeeeeeHHHHHHHHHHHHhHHHH
Confidence 9999999999999999988899999998877666655432 10 1 112335567899999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020386 261 QVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKL 326 (327)
Q Consensus 261 ~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~~~~~~~~~g~i~~v~gt~~si~~li~~~~ 326 (327)
.+++++|+++++.++|+.|++||++++.+..-..+...+..+++.|.++++.|.|.|..++|++++
T Consensus 454 ~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~ 519 (524)
T KOG4303|consen 454 ELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAIN 519 (524)
T ss_pred HHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHh
Confidence 999999999999999999999999996443222344456788889999999999999999999875
No 6
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=9.4e-37 Score=293.37 Aligned_cols=282 Identities=22% Similarity=0.285 Sum_probs=217.5
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHH
Q 020386 20 AYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQ 99 (327)
Q Consensus 20 ~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (327)
..++..|.++.+++++|++++|+++++++.|.+|.++.+.+.++.+...... ...++.+.+.+. .....+.++++.
T Consensus 121 ~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 196 (409)
T PF01490_consen 121 FISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISY-GPGEPSGVPSPP---VWPFISFSGFFS 196 (409)
T ss_pred cccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeee-eccccccccccc---ccccchhhHHHH
Confidence 3567788888999999999999999999999999877664322222222221 111111111111 112344568999
Q ss_pred HHHHHHhhccCchhhHHHHhhcCCCCccc-cchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHH
Q 020386 100 ALGDIAFAYPYSIILLEIQDTLKSPPPEN-KTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178 (327)
Q Consensus 100 ~~gi~~faf~~~~~~~~i~~~M~~p~p~~-~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~ 178 (327)
++|+++|||.||.++||+++|||+| ++ ++++++...++.+++++|..+|+.||++||+++++|++.|+| ++++..
T Consensus 197 ~~~i~~faf~~~~~~~~i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~ 272 (409)
T PF01490_consen 197 AFGIIIFAFSCHPNLPPIQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLI 272 (409)
T ss_pred hhhhhhhhhhcccccceeeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Cccccc
Confidence 9999999999999999999999998 33 345599999999999999999999999999999999999998 344677
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccc
Q 020386 179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY 258 (327)
Q Consensus 179 ~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~ 258 (327)
.++++++.++++.+||++.+|.++.+|+.+.++.+..+...+ + +.+.+++|...|+.+++.++++|..+|+
T Consensus 273 ~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~iA~~vp~ 343 (409)
T PF01490_consen 273 IIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK----N-----TPSSRWLRYLIRIILVLLSFLIAIFVPN 343 (409)
T ss_pred ccccccchhhhhhccccccchhHhhhhhheeccccccccccc----c-----ccccceeeeeeecchhhhhhhhhhhccc
Confidence 899999999999999999999999999988753100010000 0 0123477899999999999999999999
Q ss_pred hHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 020386 259 FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWI-----VLRTFSFICLLVTIIGLIGSI 318 (327)
Q Consensus 259 ~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~-----~~~~~~~~g~i~~v~gt~~si 318 (327)
++++++++||++++.++|++|+++|++.+|+++++.+|. .++.++++|++..+.|++.++
T Consensus 344 ~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 344 FGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 999999999999999999999999999987665433222 235566788888888888765
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.97 E-value=7.6e-31 Score=249.97 Aligned_cols=275 Identities=18% Similarity=0.241 Sum_probs=216.0
Q ss_pred hHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHHHHHHH
Q 020386 26 HMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIA 105 (327)
Q Consensus 26 ~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 105 (327)
|.++...+..||++.|+++++++.|.++.++.....+++++.. ..++....+... ..+.....++.+.++|+++
T Consensus 131 ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~pi~~ 204 (411)
T KOG1305|consen 131 ILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKY----FQGPCALGRLSY--LVPNLSSFSSLFYALPIFV 204 (411)
T ss_pred eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----HhcccccCCccc--ccCCcchhhhhhhhhhhhh
Confidence 5777788899999999999999999998776665443333322 221110011110 0122222268899999999
Q ss_pred hhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchH----HHHHH
Q 020386 106 FAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYW----LIDLA 181 (327)
Q Consensus 106 faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~----~~~~~ 181 (327)
|||.||.+..++++||||| +++++.++...+...+..+|..+|.+||+.||+++.+|++.++|...+.. ....+
T Consensus 205 faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~v 282 (411)
T KOG1305|consen 205 FAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCV 282 (411)
T ss_pred eeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHH
Confidence 9999999999999999998 78999999999999999999999999999999999999999998533322 35688
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccchHH
Q 020386 182 NACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQ 261 (327)
Q Consensus 182 ~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~~~~ 261 (327)
+..+..+.+..+|+..+|++..++..+.+.+|+.+ +.++.++..+...++..+.+.|+.+|++++
T Consensus 283 r~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~---------------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~ 347 (411)
T KOG1305|consen 283 RLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLT---------------SFSGKRHFVITLLLLIFTFLLAIFVPSIGT 347 (411)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCC---------------CccceehhHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999888776543211 112355666777888999999999999999
Q ss_pred HHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020386 262 VLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAK 325 (327)
Q Consensus 262 v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~~~~~~~~~g~i~~v~gt~~si~~li~~~ 325 (327)
+.+++||++++.++|++|+++|++.+|.+.++ ....+.+.+++....+.|++.-+.++..+.
T Consensus 348 i~~~vGAT~~~~i~FI~P~~~yl~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 348 IFGFVGATSSTSISFILPALYYLKASKKKSRE--PLGALIFLILGVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHhhhhhhhhhHHHHHHHhhheeecccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999997762222 222356778888888999988888877653
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.71 E-value=7.8e-16 Score=148.41 Aligned_cols=266 Identities=14% Similarity=0.176 Sum_probs=174.2
Q ss_pred CCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCCh--hhHHHHHH
Q 020386 21 YGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANL--ADKLWLAF 98 (327)
Q Consensus 21 ~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 98 (327)
.+.+.+.+++.+++.++++.++...+++.|.+.........++. .+.....++. .... ++. +....++.
T Consensus 126 ~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~----~~~~~~~~~~--~l~~---~~~~~~~~~~~~~ 196 (415)
T COG0814 126 LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV----VYLIPHWNPA--NLFA---LPSASQSFWKYLL 196 (415)
T ss_pred cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH----HHHhcccCHH--HHhc---ccccchhhHHHHH
Confidence 56667788889999999999999999999988765554422222 2221111111 0111 111 13334788
Q ss_pred HHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHH
Q 020386 99 QALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178 (327)
Q Consensus 99 ~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~ 178 (327)
.++|+++|||+||+++|++++|||++ ++++.+|+...+..+..++|..+++++|..+|+++.++++.+.+ +.+...
T Consensus 197 ~~ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~--~~~~~l 272 (415)
T COG0814 197 LAIPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE--QNISLL 272 (415)
T ss_pred HHhhHHHhhhhCCccchHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC--chHHHH
Confidence 99999999999999999999999987 33459999999999999999999999999999999999999997 333221
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHH--------------HHHHHhhhCCCCCcccccccccCCCCCCcccchhhHh--HH
Q 020386 179 DLANACIVLHLVGGYQIFSQPVFAF--------------VERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC--FR 242 (327)
Q Consensus 179 ~~~~~~~~l~~~~sypl~~~p~~~~--------------le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~--~r 242 (327)
.+..........+++.+.++.+.. +++...+. +++ + .++..+.+.. ..
T Consensus 273 -~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~--~~~----------~---~r~~~~~~~~~~~~ 336 (415)
T COG0814 273 -SALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS--NSK----------P---GRKKTGLLTFLPPL 336 (415)
T ss_pred -HHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc--cCc----------c---cchhhhhhhHHHHH
Confidence 222233333335555555555433 33322210 000 0 0111122222 22
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 020386 243 TAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLI 315 (327)
Q Consensus 243 ~~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~~~~~~~~~g~i~~v~gt~ 315 (327)
...++.....+...|..+.+++.+|+.....+.+..|...+.+....+.+..++.....+.++|+...+.-.+
T Consensus 337 i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~ 409 (415)
T COG0814 337 IFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL 409 (415)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence 3455678888889999999999999999999999999998877743332222122344555666666554443
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.11 E-value=4.8e-09 Score=100.35 Aligned_cols=233 Identities=11% Similarity=0.042 Sum_probs=145.2
Q ss_pred chhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHHHHH
Q 020386 24 TKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGD 103 (327)
Q Consensus 24 ~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 103 (327)
+.+.+++.+++.++.. +..+..+.++.+.....+....+.++.+..+. +. . ..... ........+.+.++++
T Consensus 115 ~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~-~~--~--~~~~~--~~~~~~~~~~~~a~~~ 186 (381)
T TIGR00837 115 RAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALVFSGLLPHV-KG--D--LLLDV--ALDTSYWPYILSALPV 186 (381)
T ss_pred HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cH--H--HHhcC--ccccccHHHHHHHHHH
Confidence 3344444445555544 44577777776655544433222222222211 10 0 00000 0001122367788899
Q ss_pred HHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCccccccc----------ccCC-C
Q 020386 104 IAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLT----------GFGF-Y 172 (327)
Q Consensus 104 ~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~----------n~~~-~ 172 (327)
..++|++|.+++++.+|+++| +|+.+|++..+..+++++|..+........+.+.-.+... .+.. .
T Consensus 187 ~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 263 (381)
T TIGR00837 187 CLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVL 263 (381)
T ss_pred HHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhc
Confidence 999999999999999999854 3899999999999999999988766665554443211111 1110 0
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHH
Q 020386 173 EPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAV 252 (327)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~i 252 (327)
...+...++...-.+.+.+++.-.....+|.+++.+.+.. + + ..|.....+..+...++
T Consensus 264 ~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~-~-~-------------------~~~~~~~~~~~~~pl~~ 322 (381)
T TIGR00837 264 KSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD-S-K-------------------KGRFKTGLLTFLPPLVF 322 (381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-c-c-------------------CCCchhhhhhHHhHHHH
Confidence 1233445666777777888887777777777776654421 0 0 01222334445678888
Q ss_pred HHhccchH-HHHHHHhhhhhhhHHHHhhHHhhHhhccc
Q 020386 253 AIIFPYFN-QVLGVLGALNFWPLAIYFPVEMYFVQKKI 289 (327)
Q Consensus 253 A~~vP~~~-~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~ 289 (327)
|.+.|+.. ..++..| +.+..+.+++|++++++.||+
T Consensus 323 a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 323 ALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred HHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999977 8999999 888999999999999998765
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.68 E-value=4.5e-06 Score=80.30 Aligned_cols=170 Identities=20% Similarity=0.286 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhh--hhhhhc---------ccCCCccc
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCC--GCFGYA---------AFGNDTPG 163 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~---------~fG~~~~~ 163 (327)
...+.++|+.+++|+.|..+|++.+.+++. ++|.+|++..+..+..++|+.. .+.|-. .-|++..+
T Consensus 184 ~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~ 260 (394)
T PF03222_consen 184 SYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSA 260 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHH
Confidence 366789999999999999999999999953 3889999999988888888765 223311 11111111
Q ss_pred --ccccccCCCCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhH
Q 020386 164 --NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCF 241 (327)
Q Consensus 164 --~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~ 241 (327)
..+.+.. +..+...++.+.-.+.+.+||-=...-.+|.+++.++.+ +.+ ..|...
T Consensus 261 ~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~--~~~-------------------~~r~~~ 317 (394)
T PF03222_consen 261 LVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK--NNS-------------------SGRLKT 317 (394)
T ss_pred HHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ccc-------------------cchHHH
Confidence 1222222 223344456666666777777555566777777766431 110 122222
Q ss_pred HHHHHHHHHHHHHhccc-hHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCc
Q 020386 242 RTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGA 291 (327)
Q Consensus 242 r~~~v~~~~~iA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~ 291 (327)
-....+-..++|...|+ |-..+++.| ...+.+..++|+++.+|.||+++
T Consensus 318 ~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 318 WLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 23334457888999997 889999999 99999999999999999976543
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.33 E-value=1.8e-05 Score=76.23 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=115.8
Q ss_pred HHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc-----cc-----ccc
Q 020386 97 AFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT-----PG-----NLL 166 (327)
Q Consensus 97 ~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~-----~~-----~il 166 (327)
.+.++|++.+||+.|.++|++.+.+++. .+|.+|++..+..+..++|+.-=......-+.+. ++ +++
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 6788999999999999999999999863 3899999999999999988865444443333331 11 222
Q ss_pred cccCC-CCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHH
Q 020386 167 TGFGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAY 245 (327)
Q Consensus 167 ~n~~~-~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~ 245 (327)
..+.. .+..+...++.+.-.+.+.+||-=.....+|.+++.++++. + ...|...-...
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~-~--------------------~~~r~~~~~l~ 318 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN-T--------------------VGGRLQTGLIT 318 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc-c--------------------ccCCchhehhh
Confidence 32221 02234555666666666777775555566777777654321 0 01132333455
Q ss_pred HHHHHHHHHhccc-hHHHHHHHhhhhhhhHHHHhhHHhhHhhcccC
Q 020386 246 VVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIG 290 (327)
Q Consensus 246 v~~~~~iA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~ 290 (327)
.+-..++|...|+ |...+++.|. ..+.+.+++|+++-++.+|.+
T Consensus 319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 5678899999998 8888999886 578999999999999987643
No 12
>PRK10483 tryptophan permease; Provisional
Probab=98.28 E-value=0.00012 Score=70.40 Aligned_cols=169 Identities=13% Similarity=0.092 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc------c-cc---c
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT------P-GN---L 165 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~------~-~~---i 165 (327)
..+.++|+++++|+.|.++|++.+.+++. .+|.+|++..+..+..++|+.-=......-+.+. + +| .
T Consensus 193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L 269 (414)
T PRK10483 193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVL 269 (414)
T ss_pred HHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHH
Confidence 46788999999999999999999999863 2799999999999999999873222222222111 1 11 1
Q ss_pred ccccCCC-CchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHH
Q 020386 166 LTGFGFY-EPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTA 244 (327)
Q Consensus 166 l~n~~~~-~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~ 244 (327)
+..+... +..+...++.+.-.+.+.+||-=.....+|.+++.++.+ +++ ..|...-..
T Consensus 270 ~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~~-------------------~~r~~~~~l 328 (414)
T PRK10483 270 VQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DSA-------------------MGRFKTALL 328 (414)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehh
Confidence 1222110 122343455666666677777555566777777766542 110 112112223
Q ss_pred HHHHHHHHHHhccc-hHHHHHHHhhhhhhhHHHHhhHHhhHhhccc
Q 020386 245 YVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQKKI 289 (327)
Q Consensus 245 ~v~~~~~iA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~ 289 (327)
..+=..++|...|+ |=..+++.|.. ++.+.-++|+++.++.||+
T Consensus 329 tflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 329 TFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 44568889999998 88899999976 6677789999999999875
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.20 E-value=0.00021 Score=68.85 Aligned_cols=169 Identities=13% Similarity=0.102 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhh--hhhhhc---------ccCCCcccc
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCC--GCFGYA---------AFGNDTPGN 164 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~---------~fG~~~~~~ 164 (327)
..+.++|++.++|+.|.++|++.+.+++. .++.+|++..+..+..++|++. .+.|-. +-|+++.+.
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l 270 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL 270 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence 46778999999999999999999998853 3788888888888888888543 222211 122222221
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHH
Q 020386 165 LLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTA 244 (327)
Q Consensus 165 il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~ 244 (327)
+..-....+..+...++.+...+.+.+||-=.....+|.+.+.++.+ +++ ..|...-..
T Consensus 271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~~-------------------~~r~~~~~l 329 (415)
T PRK09664 271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--NSH-------------------GGRFKTVLL 329 (415)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehh
Confidence 11111101234455566666666777777555566777777766432 111 112112223
Q ss_pred HHHHHHHHHHhccc-hHHHHHHHhhhhhhhHHHHhhHHhhHhhccc
Q 020386 245 YVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQKKI 289 (327)
Q Consensus 245 ~v~~~~~iA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~ 289 (327)
..+-..+.|...|+ |=..+++.|.. ++.+.-++|+++-++.||+
T Consensus 330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 44567889999998 88899999996 6688889999999999875
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.98 E-value=0.00019 Score=69.09 Aligned_cols=178 Identities=10% Similarity=0.027 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhh----cCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcc-----ccc
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDT----LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP-----GNL 165 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~----M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~-----~~i 165 (327)
.+...++++..+||.+|..+++...+ .++|....+|.+|++..+..+..++|+..-+..-...+++.- +|+
T Consensus 186 ~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ni 265 (397)
T TIGR00814 186 KTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNI 265 (397)
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCc
Confidence 46788999999999999999999733 332211247889999999999999888776666666655431 121
Q ss_pred --ccccCCC-CchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhh-CCCCCcccccccccCCCCCCcccchhhHhH
Q 020386 166 --LTGFGFY-EPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRK-YPSSGFVNNFYTFKLPLLPPLRVNILRLCF 241 (327)
Q Consensus 166 --l~n~~~~-~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~ 241 (327)
+..+... +..+...+..+.-.+.+..||-=.....+|.+++...+. .++++.. +.+......
T Consensus 266 s~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~--------------~~~~~~~~~ 331 (397)
T TIGR00814 266 SILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKI--------------NIRKLNRAI 331 (397)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccc--------------CHHHHHHHH
Confidence 2211100 112333334444445566666666677888888877321 1111100 112333344
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhh
Q 020386 242 RTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQ 286 (327)
Q Consensus 242 r~~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~ 286 (327)
-....+.+...|+.=|++-++++-+|+-....+.|++|...-.|.
T Consensus 332 ~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 332 AIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 456667899999999999999997788888889999999877766
No 15
>PRK11021 putative transporter; Provisional
Probab=97.90 E-value=0.0053 Score=59.34 Aligned_cols=55 Identities=20% Similarity=0.385 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 152 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 152 (327)
.++..++....|+|.|-......-+|+||| +|+.+|++..+...+.++|......
T Consensus 177 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 177 SGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHhcHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999998 3789999999999999999987654
No 16
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.87 E-value=0.0032 Score=62.15 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=44.3
Q ss_pred HHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCC
Q 020386 103 DIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN 159 (327)
Q Consensus 103 i~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~ 159 (327)
.+.|+|.|-......-+|+||| +|+.+|++..+...+.++|....+.-...-++
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~ 255 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIAFIIPR 255 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 4578999999999999999998 47899999999999999998766554444433
No 17
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.86 E-value=0.0032 Score=62.00 Aligned_cols=59 Identities=7% Similarity=0.028 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 158 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 158 (327)
++..++....|+|.|-.....+-+|.|++ |+.+|++..+...+.++|..+.+..+...+
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 45577888999999999988888999976 999999999999999999988876655444
No 18
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.86 E-value=0.0026 Score=61.59 Aligned_cols=177 Identities=11% Similarity=0.049 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCC-----Ccc--ccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc-----cc
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSP-----PPE--NKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT-----PG 163 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p-----~p~--~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~-----~~ 163 (327)
....++|+++|+|+-|..+|++...+|+. .++ .+|-+|++..+..+..++|+..-+..-.+-+++. ++
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 46788999999999999999998884321 012 4888999999999999988877665555554433 11
Q ss_pred cc--ccc----cCCC-Cc-----hHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhh-h-CCCCCcccccccccCCCC
Q 020386 164 NL--LTG----FGFY-EP-----YWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTR-K-YPSSGFVNNFYTFKLPLL 229 (327)
Q Consensus 164 ~i--l~n----~~~~-~~-----~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~-~-~~~~~~~~~~~~~~~p~~ 229 (327)
|+ +.. ++.. +. .+...+..+...+.+..||-=.....+|.++....+ . .++++..
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~----------- 358 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKV----------- 358 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----------
Confidence 22 222 2210 00 123334444445556667655556778888887742 1 1111100
Q ss_pred CCcccchhhHhHHHHHHHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhh
Q 020386 230 PPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQ 286 (327)
Q Consensus 230 ~~~~~~~~r~~~r~~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~ 286 (327)
+.+..+........+.++..|+.=|++-++++-+|+-....+.|++|...-.|.
T Consensus 359 ---~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kv 412 (443)
T PRK13629 359 ---SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKA 412 (443)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHcc
Confidence 112334445556677899999999999999998888888899999999877766
No 19
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.79 E-value=0.0038 Score=60.43 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCC
Q 020386 97 AFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND 160 (327)
Q Consensus 97 ~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~ 160 (327)
.+.+++...|+|.|-.......+|+|| |+.+|++..+..++.++|......-....+++
T Consensus 190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccch
Confidence 467788899999999999999999875 78999999999999999999877666666554
No 20
>PRK10746 putative transport protein YifK; Provisional
Probab=97.77 E-value=0.0067 Score=59.69 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF 157 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f 157 (327)
.++..++....|+|.|-......-+|+||| +|+.+|++..+.....++|.......-...
T Consensus 200 ~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~ 259 (461)
T PRK10746 200 KGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFVIVTIF 259 (461)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence 366788899999999999999999999998 478999999888888888887544433333
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.70 E-value=0.012 Score=57.60 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhh
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGY 154 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY 154 (327)
.+..++....|+|.|-......-+|+||| +|+.+|++..+..++.++|..+.+.-.
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999 378999999999999999998876533
No 22
>PRK10655 potE putrescine transporter; Provisional
Probab=97.70 E-value=0.017 Score=56.25 Aligned_cols=56 Identities=9% Similarity=0.069 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhh
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGY 154 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY 154 (327)
++..++....|+|.|-......-+|+||| +|+.+|++..+..+..++|.+......
T Consensus 190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 190 AVGSSIAMTLWAFLGLESACANSDAVENP---ERNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788999999999999999999998 378999999999999999988765443
No 23
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.67 E-value=0.019 Score=56.07 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386 94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF 157 (327)
Q Consensus 94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f 157 (327)
..++..++....|+|.|-......-+|+||| +|+.+|++..+...+.++|....+.-....
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4577888899999999999999999999998 368999999999999999998876554433
No 24
>PRK15049 L-asparagine permease; Provisional
Probab=97.63 E-value=0.011 Score=58.67 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 158 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 158 (327)
...+.++....|+|.|-......-+|+||| +++.+|++..+.....++|...........+
T Consensus 220 ~~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 220 LPALVLIQGVVFAFASIEMVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 345666778999999999999999999999 3679999999888888888876655444443
No 25
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.62 E-value=0.011 Score=57.77 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhh
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFG 153 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G 153 (327)
.++..++....|+|.|-......-+|+||| +|+.+|++..+..++.++|.......
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 195 MALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999998 37899999999999999998876543
No 26
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.61 E-value=0.0046 Score=60.23 Aligned_cols=251 Identities=14% Similarity=0.107 Sum_probs=133.4
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHH---HHHHhhhhhhhhhhhcCCccccccCCCCCChhhHH
Q 020386 18 PCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFA---YSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKL 94 (327)
Q Consensus 18 ~c~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (327)
.|..++..-..+.++.+.. .-..|..++++.+.+-.+++.. ...++++.+++...+++..+.+.+..+ ..+.+.
T Consensus 127 ~c~~p~~~~~lla~~~l~~-lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~--g~~~~~ 203 (479)
T KOG1287|consen 127 LCDVPRVASKLLAAALLVL-LTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE--GSDTDV 203 (479)
T ss_pred CCCCchHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc--cCcCch
Confidence 3665544444444444444 4556777788776654444432 222333344443333322111111010 011111
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccc------
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTG------ 168 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n------ 168 (327)
-+.-.++=.-.|||.|=..+=.+-+|+||| +|++++++..++.+++++|..+=+..+..--.|. ++.+
T Consensus 204 g~i~lafysglfa~~GWd~lN~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e---~l~S~aVav~ 277 (479)
T KOG1287|consen 204 GNIALAFYSGLFAFSGWDYLNYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDE---ILSSDAVAVT 277 (479)
T ss_pred HHHHHHHHHhhhcccCchhhccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCHHH---hcccchHHHH
Confidence 234455556789999999999999999999 5889999999999999999999877666543322 2211
Q ss_pred cCC-CCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHH
Q 020386 169 FGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVV 247 (327)
Q Consensus 169 ~~~-~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~ 247 (327)
+.. ..+.+. -.+-++..++.+++.--.++-.-..+...-+ ++..++.-..++ .++... + ....+..
T Consensus 278 Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar----eG~LP~~~s~i~-----~~~~TP-~--~allf~~ 344 (479)
T KOG1287|consen 278 FADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR----EGHLPAFFSMIS-----VRRFTP-R--PALLFSG 344 (479)
T ss_pred HHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH----ccCccHHHHhhc-----CCCCCC-h--HHHHHHH
Confidence 110 001121 2333444444444432112111111111111 111100000000 000001 1 2223444
Q ss_pred HHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhhcccC
Q 020386 248 STTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIG 290 (327)
Q Consensus 248 ~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~ 290 (327)
+..++...+.|++++++.++=.-.....+.+=+++|+|.++++
T Consensus 345 ~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 345 LLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5566666777999999999998888899999999999998765
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=97.56 E-value=0.014 Score=56.68 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhc
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYA 155 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~ 155 (327)
+...++....|+|.|........+|+||| +|+.+|++..+..+..++|.........
T Consensus 196 ~~~~~~~~~~~af~G~e~~~~~~~E~~~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 196 GVGAATALVFFAFIGFEAISTAAEEVKNP---ERDIPKAIILSLIVVTLLYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778889999999999999999999998 3789999999999999999988755443
No 28
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.56 E-value=0.021 Score=55.91 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 152 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 152 (327)
.++..++....|+|.|-......-+|+||| +|+.+|++..+.....++|....+.
T Consensus 181 ~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 181 GAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999998 3679999999999999999886554
No 29
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.51 E-value=0.033 Score=54.90 Aligned_cols=59 Identities=5% Similarity=-0.026 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF 157 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f 157 (327)
..+..++....|+|.|-......-+|+||+ |+.+|++..+..++.++|...........
T Consensus 199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~~----r~iPrai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKNK----SDVGKATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 356778888999999999999999999985 99999999999999999988776544333
No 30
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.50 E-value=0.012 Score=59.32 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhh
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGY 154 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY 154 (327)
.+++.+.....|+|.|-......-+|+||| +++.+|++..+..+++++|..+.+.--
T Consensus 231 ~g~l~g~~~~~faf~Gfd~v~~~aeE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l~ 287 (557)
T TIGR00906 231 TGVLSGAATCFFAFIGFDAIATTGEEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAALT 287 (557)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999999 367999999999999999998865543
No 31
>PRK10249 phenylalanine transporter; Provisional
Probab=97.43 E-value=0.039 Score=54.20 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhh
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFG 153 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G 153 (327)
++..++....|+|.|-......-+|+||| +|+.+|++..+.....++|......-
T Consensus 210 ~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 210 GLILSLAVIMFSFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999998 37899999999999999997754443
No 32
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.43 E-value=0.017 Score=57.45 Aligned_cols=61 Identities=23% Similarity=0.225 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386 94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF 157 (327)
Q Consensus 94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f 157 (327)
..++..++....|+|.|-.......+|+||| +|+.+|++..+..++.++|.+..+.-....
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3467778889999999999999999999998 378999999999999999999865543333
No 33
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.40 E-value=0.047 Score=53.81 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 158 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 158 (327)
.+.+.++....|+|.|-......-+|+||| +|+.+|++..+.....++|....+..-...+
T Consensus 206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 206 LPILMTMVAVNFAFSGTELIGIAAGETENP---AKVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 456777788899999999999999999999 3689999999999999999887654433333
No 34
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.39 E-value=0.051 Score=53.35 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 152 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 152 (327)
+...++....|+|.|-......-+|+||| +|+.+|++..+.....++|......
T Consensus 200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 200 GMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778889999999999999999999999 3679999988877778888766543
No 35
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.31 E-value=0.14 Score=50.49 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386 94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 152 (327)
Q Consensus 94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 152 (327)
..++..++....|+|.|-......-+|+||| +|+.+|++..+.....++|....+.
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANP---RKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888999999999999999999998 3789999999999999999987543
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.28 E-value=0.044 Score=53.44 Aligned_cols=54 Identities=9% Similarity=-0.031 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhh
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGC 151 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~ 151 (327)
.+++.++....|+|.|.......-+|+||| +++.+|++..+..++..+|...-.
T Consensus 191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 191 VGVFAAIPFAIWFFLAVEGVAMAAEETKNP---KRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence 367778888899999999999999999998 368999999999888888876644
No 37
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.22 E-value=0.035 Score=54.55 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhh
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCC 149 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~ 149 (327)
++..+++...|+|.|-......-+|+||| +|+.+|++..+.....+.|...
T Consensus 201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP---~r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 201 GLVMMMAIIMFSFGGLELVGITAAEADNP---EQSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHH
Confidence 55667788999999999999999999998 3679999988877777777654
No 38
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.21 E-value=0.083 Score=52.69 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=41.4
Q ss_pred HHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhh
Q 020386 98 FQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCG 150 (327)
Q Consensus 98 ~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g 150 (327)
...+..+.|+|.|-......-+|+||| +|+++|++..+..+..++|....
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHH
Confidence 334444689999999999999999999 37899999999998888887644
No 39
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.18 E-value=0.072 Score=52.49 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhc
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYA 155 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~ 155 (327)
+++.++....|+|.|-......-+|+||| +|+.+|++..+.....++|......-+.
T Consensus 212 ~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~y~l~~~~~~~ 268 (469)
T PRK11049 212 GFFAGFQIAVFAFVGIELVGTTAAETKDP---EKSLPRAINSIPIRIIMFYVFALIVIMS 268 (469)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 57888999999999999999999999998 3679999987777778888766655443
No 40
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.13 E-value=0.15 Score=50.65 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 152 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 152 (327)
+...++....|+|.|-......-+|+||| +++.+|++..+...+..+|....++
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHHH
Confidence 45666777899999999999999999998 3789999999999999999876443
No 41
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=96.99 E-value=0.14 Score=50.54 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 158 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 158 (327)
....++....|+|.|-......-+|+||| +|+.+|++..+..+..+++....+.-+...+
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555666789999999999999999998 4789999999887766554443333333333
No 42
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=96.99 E-value=0.15 Score=49.85 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 158 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 158 (327)
++..++....|+|.|-......-+|+||| +|+.+|++..+......+|...........+
T Consensus 202 ~~~~a~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 202 AVLLAILVTMFSFMGTEIVTIAAAESSNP---IKSITRATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred HHHHHHHHHHHHhccHHHHhHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 57888999999999999999999999998 3689999988888888888876544333333
No 43
>PRK10836 lysine transporter; Provisional
Probab=96.88 E-value=0.29 Score=48.50 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF 157 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f 157 (327)
..+.+.....|+|.|-......-+|+||| +|+.+|++..+...+.++|......-....
T Consensus 206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 206 AMIGVAMIVGFSFQGTELIGIAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 34444555679999999999999999998 378999999999999999998765444443
No 44
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.84 E-value=0.065 Score=51.83 Aligned_cols=181 Identities=12% Similarity=0.143 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHh-----hhhhhhhhcccCCCccccc
Q 020386 91 ADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFY-----LCCGCFGYAAFGNDTPGNL 165 (327)
Q Consensus 91 ~~~~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y-----~~~g~~GY~~fG~~~~~~i 165 (327)
+....+++.++-+.+|||++.-.+=.--.|-|||+ +..+|+.+.-..=..++| .++.+.-+-.++++.++-+
T Consensus 199 P~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV 275 (462)
T COG1113 199 PNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV 275 (462)
T ss_pred CCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence 34445888999999999999999888999999992 556676654444444444 4566667777777666533
Q ss_pred --ccccCCCCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHH
Q 020386 166 --LTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRT 243 (327)
Q Consensus 166 --l~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~ 243 (327)
...++. | ....+.|..+....+.+.-=-.+..-.++..+-.+.. ..+...+-.+.+.| ..-+...+
T Consensus 276 ~~f~~iGi--~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~-APk~~~klsk~gVP--------~~ai~~s~ 343 (462)
T COG1113 276 TVFSLIGI--P-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGD-APKAFAKLSKRGVP--------VNAILLSA 343 (462)
T ss_pred HHHHHcCC--c-ccccceeEEEeechhhcccccccccchHHHHHhhcCc-ccHhHhhccccCCC--------HHHHHHHH
Confidence 333331 1 1222333322222222221111122223333221110 00111100001122 33455666
Q ss_pred HHHHHHHHHHHhccchHHHHHHHhhhhhhhHH--HHhhHHhhHhhcc
Q 020386 244 AYVVSTTAVAIIFPYFNQVLGVLGALNFWPLA--IYFPVEMYFVQKK 288 (327)
Q Consensus 244 ~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~--fi~P~l~yl~~~k 288 (327)
...++..++....| +.+..++=+.++..+. ..+=.+.|+|.+|
T Consensus 344 ~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 344 VVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778888889999 6666665555444333 3344456777776
No 45
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.40 E-value=1.4 Score=47.41 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386 97 AFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 152 (327)
Q Consensus 97 ~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 152 (327)
++..++++.+||.|-.....+-.|+|+| +++.++++..+..+++++|+++.+.
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP---~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDP---QKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5666788888999988999999999999 3789999999999999999998763
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.15 E-value=1.4 Score=42.79 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCC
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN 159 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~ 159 (327)
....++....++|.|-......-+|+||| +++.+|++..+...+.++|......-....++
T Consensus 202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 202 GILAAILLAFFAFTGFEAIATLAEEVKNP---KRTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 57788889999999999999999999998 36689999999999999999988877777765
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=95.75 E-value=2.3 Score=41.91 Aligned_cols=60 Identities=8% Similarity=-0.150 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386 96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 158 (327)
Q Consensus 96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 158 (327)
.+..+.....|+|.|-.....+-+|+||| +|+.+|++..+..+..++|...-+......+
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP---~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNP---RRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45556667789999999999999999999 4789999999998887766555444343334
No 48
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=94.75 E-value=2.3 Score=40.18 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=48.8
Q ss_pred HHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcc
Q 020386 102 GDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP 162 (327)
Q Consensus 102 gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~ 162 (327)
....++|.+.....-...++|+| ++.+|+...+..+...+|...-+..-..+|.+..
T Consensus 186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~ 242 (359)
T TIGR00912 186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVT 242 (359)
T ss_pred HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHh
Confidence 36788998888888888999987 8999999999999999999888887888876543
No 49
>PRK11375 allantoin permease; Provisional
Probab=93.91 E-value=7.4 Score=38.63 Aligned_cols=63 Identities=8% Similarity=0.231 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhcc-CchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhh----hcccCCCc
Q 020386 95 WLAFQALGDIAFAYP-YSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFG----YAAFGNDT 161 (327)
Q Consensus 95 ~~~~~~~gi~~faf~-~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G----Y~~fG~~~ 161 (327)
+.+..++...+=++. .-.+.+..-+-.|+| ++-.+.-..++.+...+...+|+.. ...||...
T Consensus 227 ~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~ 294 (484)
T PRK11375 227 FLFLVVINAVVAVWAAPAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADT 294 (484)
T ss_pred HHHHHHHHHHHHHHHHHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 344333433333333 334777888888876 5544444445555544443334332 34666543
No 50
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=92.76 E-value=0.38 Score=47.45 Aligned_cols=65 Identities=23% Similarity=0.200 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc
Q 020386 94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT 161 (327)
Q Consensus 94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~ 161 (327)
..+++.++....++|.|-......-+|.||| +|+.+|+...+.....++|.......=...|.+.
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 3478899999999999999999999999999 4789999999999999999887765555555443
No 51
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.36 E-value=6.4 Score=39.75 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386 94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 152 (327)
Q Consensus 94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 152 (327)
+.+++.++-+..|+|.|--.+-.--+|-||| +|..++++..++..++.+|....+.
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNP---RKAIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCC---cccccHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899999999999999999999998 3789999999999999999987654
No 52
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=91.92 E-value=10 Score=37.80 Aligned_cols=73 Identities=12% Similarity=-0.025 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccc
Q 020386 93 KLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTG 168 (327)
Q Consensus 93 ~~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n 168 (327)
+-|.+..++-.-+..+.|--.-..+-+|-||+ +++-+|++..+..+..++=..+-+.-..+-++|.....-.+
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~ 322 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS 322 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC
Confidence 34566666777777788888888899999997 36788888777776666655555555556665444333333
No 53
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=90.91 E-value=16 Score=35.15 Aligned_cols=45 Identities=13% Similarity=0.272 Sum_probs=32.1
Q ss_pred hhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCC
Q 020386 112 IILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND 160 (327)
Q Consensus 112 ~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~ 160 (327)
...++..+-.|+| ++..+....+..+...+-..+|...-.+.|+.
T Consensus 190 ~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 190 PLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred HHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3467777777776 76666667777777788888887776666653
No 54
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=88.66 E-value=28 Score=34.84 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=72.8
Q ss_pred CCCchhHHHHHHHHHHHh--cCCCcchhh-HHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc---ccc-ccCCCCCChhhH
Q 020386 21 YGDTKHMLLFGAVQVVMS--QIPDFHNME-WLSVIAAIMSFAYSFIGFGLGFAKVIENGRI---KGS-IAGVPTANLADK 93 (327)
Q Consensus 21 ~~~~~~~~i~~~v~~pl~--~~~~l~~L~-~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~ 93 (327)
.+...|..++.++++.+. -.|-+.+.. |+|.+=++..+.+.++.++ ....+..++.. ++- .++ .....
T Consensus 158 v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii-~~~Gg~~~~~~ig~~yw~~pg----~F~~g 232 (541)
T COG0833 158 VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGII-IICGGGPTHGYIGFNYWHDPG----AFAGG 232 (541)
T ss_pred CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCcceeeecCCC----CCCcc
Confidence 356678888888777666 456666666 4455544444443333322 12222222110 000 011 12233
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhh
Q 020386 94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLC 148 (327)
Q Consensus 94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~ 148 (327)
+.++...+-+..|+|.|.-.+----.|-+|| +|..+|+++..+.=...+|+.
T Consensus 233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP---~K~iPkAik~vfwRIl~FYi~ 284 (541)
T COG0833 233 FKGFCSVFVIAAFSFSGTELVGLAAGESENP---RKSIPKAIKQVFWRILLFYIL 284 (541)
T ss_pred hHHHHHHHhhheeeeeceeeeeeeecccCCc---hhhhHHHHHHHHHHHHHHHHH
Confidence 4577777888999999988888888899998 367888888777777777753
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=82.36 E-value=51 Score=32.13 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=32.7
Q ss_pred cCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcc----cCCCc
Q 020386 109 PYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAA----FGNDT 161 (327)
Q Consensus 109 ~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~----fG~~~ 161 (327)
..-.+.+...+.+|+| ++-.+....++.........+|+.+-.+ +|+..
T Consensus 222 s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 222 TWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 3445778888889886 5554556666666666666777766655 77653
No 56
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=79.00 E-value=23 Score=36.87 Aligned_cols=69 Identities=9% Similarity=0.141 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhH--hhcccCchhHHH-HHHHHHHHHHHHHHHHHH
Q 020386 244 AYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYF--VQKKIGAWTRKW-IVLRTFSFICLLVTIIGL 314 (327)
Q Consensus 244 ~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl--~~~k~~~~~~~~-~~~~~~~~~g~i~~v~gt 314 (327)
++.++.+-+++.+-+++.+-.++.-++ .+||.+=-+..- -+.+.+.|.++| ..+|.+..+|+.++.+-+
T Consensus 551 lLT~~Ice~gILigslD~iApilsmFF--LMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iM 622 (1075)
T KOG2082|consen 551 LLTAIICECGILIGSLDLIAPILSMFF--LMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIM 622 (1075)
T ss_pred HHHHHHHHhhheeechhHHHHHHHHHH--HHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHH
Confidence 344566777888889988888877666 455544433222 123334444433 346888888877665433
No 57
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=67.79 E-value=1e+02 Score=29.42 Aligned_cols=32 Identities=13% Similarity=0.487 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 020386 24 TKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAI 55 (327)
Q Consensus 24 ~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v 55 (327)
..-+++.+++.+.....-=+++..+...+=.+
T Consensus 121 ~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 121 NTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 33445555566666777777777777765433
No 58
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=65.32 E-value=49 Score=30.59 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT 161 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~ 161 (327)
.+.+.+.-...+.|.+-..+.-+...+|+| ++..|....+......+|...-+..-..||.+.
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 175 KPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 355666666778888877888888999988 889999999999999988888777778888653
No 59
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=61.79 E-value=27 Score=31.03 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhccchHHHHHH---------HhhhhhhhHHHHhhHHhhHhhcccCch------hHHHHHHHHHHHHHHHH
Q 020386 245 YVVSTTAVAIIFPYFNQVLGV---------LGALNFWPLAIYFPVEMYFVQKKIGAW------TRKWIVLRTFSFICLLV 309 (327)
Q Consensus 245 ~v~~~~~iA~~vP~~~~v~~l---------~Ga~~~~~l~fi~P~l~yl~~~k~~~~------~~~~~~~~~~~~~g~i~ 309 (327)
..+.++++|..+|.++-++.. -||.+|-.++++= |..+-|.... +-+|++ |++.++|.++
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLw-wi~~vlG~ll 236 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLW-WIFLVLGLLL 236 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHH-HHHHHHHHHH
Confidence 444677788888888877765 4888888888775 5555332110 113443 6777888888
Q ss_pred HHHHHH--HHHHHHHhh
Q 020386 310 TIIGLI--GSIEGLISA 324 (327)
Q Consensus 310 ~v~gt~--~si~~li~~ 324 (327)
.+-|++ ..||++=++
T Consensus 237 ~lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEEK 253 (262)
T ss_pred HHHHHHhHHHHhhHHHH
Confidence 887775 555555443
No 60
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=58.38 E-value=1.8e+02 Score=27.98 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=21.5
Q ss_pred HHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhh
Q 020386 247 VSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQ 286 (327)
Q Consensus 247 ~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~ 286 (327)
+.+++++.. .++.++++ +...+.+++|..+-+.+
T Consensus 314 l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 314 LFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred HHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 344444443 67777774 56678888888665544
No 61
>PRK11017 codB cytosine permease; Provisional
Probab=56.38 E-value=1.9e+02 Score=27.80 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=24.9
Q ss_pred CchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCC
Q 020386 110 YSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN 159 (327)
Q Consensus 110 ~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~ 159 (327)
.-.+.+..-+..|+| ++-......++.+...+-..+|...-.+.|+
T Consensus 199 ~~~~~~DysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 199 GGTLTADFVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred hHhcCCChHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345666777777765 4433334444445555555566554455554
No 62
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=56.00 E-value=13 Score=24.05 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhcccCCCc
Q 020386 131 MKMASMISIFITTFFYLCCGCFGYAAFGNDT 161 (327)
Q Consensus 131 ~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~ 161 (327)
|..+...+..+.+++-.+.|..-|.+||+-.
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4446666777777777777888888999754
No 63
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=52.42 E-value=1.3e+02 Score=29.26 Aligned_cols=55 Identities=22% Similarity=0.081 Sum_probs=40.8
Q ss_pred chhhHhHHHHHHHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhhccc
Q 020386 235 NILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI 289 (327)
Q Consensus 235 ~~~r~~~r~~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~ 289 (327)
+.+|...|+...+.+.++.+.+-+.+.++.+.+.+.+..+-+..+++..+..+|+
T Consensus 324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 3567778876666555555555599999999999988888888888777766554
No 64
>CHL00020 psbN photosystem II protein N
Probab=48.81 E-value=14 Score=23.49 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCCc
Q 020386 134 ASMISIFITTFFYLCCGCFGYAAFGNDT 161 (327)
Q Consensus 134 ~~~~s~~~~~~~Y~~~g~~GY~~fG~~~ 161 (327)
+...+..+.+++..+.|..-|.+||+..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4455666667777777777788998753
No 65
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=46.53 E-value=17 Score=23.21 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCCCc
Q 020386 134 ASMISIFITTFFYLCCGCFGYAAFGNDT 161 (327)
Q Consensus 134 ~~~~s~~~~~~~Y~~~g~~GY~~fG~~~ 161 (327)
+...+..+.+++-.+.|..-|.+||+..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3445666677777777888888998644
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=41.45 E-value=3.6e+02 Score=26.55 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=22.0
Q ss_pred cCCCCccccchhhHHHHHHHHHHHHhhhhhhhh---hcccCC
Q 020386 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFG---YAAFGN 159 (327)
Q Consensus 121 M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G---Y~~fG~ 159 (327)
.|++ ++.+|....+......++....+.| +..+.+
T Consensus 263 aks~----~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~ 300 (483)
T PRK09442 263 YKDS----KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD 300 (483)
T ss_pred cCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5555 8888887777666666666555555 444544
No 67
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=33.35 E-value=5e+02 Score=25.89 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=21.5
Q ss_pred HHHHHHHHhhcc-CchhhHHHHhhcCCCCccccchhhHHH
Q 020386 98 FQALGDIAFAYP-YSIILLEIQDTLKSPPPENKTMKMASM 136 (327)
Q Consensus 98 ~~~~gi~~faf~-~~~~~~~i~~~M~~p~p~~~~~~~~~~ 136 (327)
..+++...|+.+ |.+.+...-+-+|+. ++..|...
T Consensus 252 ~~A~~Q~ffsl~ig~G~~it~~Sy~~~~----~n~~~~a~ 287 (523)
T PF00209_consen 252 IAALGQVFFSLSIGFGIMITYGSYNKFK----NNIFRDAL 287 (523)
T ss_dssp HHHHHHHHHHTTTTSSHHHHHHTTS-TT----S-SHHHHH
T ss_pred HHHHHHHhhccCCCcceEEEEcCcCCCC----ccccccce
Confidence 456778888887 566666666666654 56655433
No 68
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=30.41 E-value=4.8e+02 Score=24.73 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=18.0
Q ss_pred CchhhHHHHhhcCCCCccccchhhHHHHHHHHH
Q 020386 110 YSIILLEIQDTLKSPPPENKTMKMASMISIFIT 142 (327)
Q Consensus 110 ~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~ 142 (327)
+...+.++-+|||++ +.-.+....+-++.
T Consensus 194 ~~avLv~lg~~~~~~----~~~~~g~l~gglIl 222 (349)
T COG3949 194 AVAVLVPLGGRMESR----KVSGIGGLIGGLIL 222 (349)
T ss_pred HhHhhhhhccccccc----chhhhhhhhhhHHH
Confidence 455677788999997 65555444443333
No 69
>PRK10484 putative transporter; Provisional
Probab=28.17 E-value=6.1e+02 Score=25.26 Aligned_cols=31 Identities=10% Similarity=0.273 Sum_probs=19.0
Q ss_pred cchhhHHHHHHHHHHHHh---hhhhhhhhcccCC
Q 020386 129 KTMKMASMISIFITTFFY---LCCGCFGYAAFGN 159 (327)
Q Consensus 129 ~~~~~~~~~s~~~~~~~Y---~~~g~~GY~~fG~ 159 (327)
|+.+|....+.......+ ...|+.++..|++
T Consensus 274 k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~ 307 (523)
T PRK10484 274 AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD 307 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777666544333333 3457778877766
No 70
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=27.13 E-value=2.3e+02 Score=23.50 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=45.1
Q ss_pred ccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHHHHHHHHHHHHHHHhhhhccccH
Q 020386 128 NKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPV 200 (327)
Q Consensus 128 ~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~ 200 (327)
+++.+|.+....-....+..++|+..-..+-++. ++ .|+-+ --+|+=....+++.+|.+..+..+.+|.
T Consensus 43 ~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~-~~fyS-lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 43 SKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI-PNMYS-LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-Ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3667777888877777777778876555554442 22 23321 2356555666778889999888877775
No 71
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=27.09 E-value=1.6e+02 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.253 Sum_probs=21.3
Q ss_pred HHhhhhhhhHHHHhhHHhhHhhccc
Q 020386 265 VLGALNFWPLAIYFPVEMYFVQKKI 289 (327)
Q Consensus 265 l~Ga~~~~~l~fi~P~l~yl~~~k~ 289 (327)
+.|++.+..+..++|+.+.+.++|+
T Consensus 49 ~f~Gi~GgGlmvl~pa~~~l~~~~~ 73 (195)
T PF05805_consen 49 YFGGIIGGGLMVLLPAIVFLAAGKR 73 (195)
T ss_pred ecCccccchHHHHHHHHHHHHhCCC
Confidence 4588888889999999999998765
No 72
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=26.57 E-value=6.1e+02 Score=24.74 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=16.7
Q ss_pred cchhhHHHHHHHHHHHHhhhhhhhhhc
Q 020386 129 KTMKMASMISIFITTFFYLCCGCFGYA 155 (327)
Q Consensus 129 ~~~~~~~~~s~~~~~~~Y~~~g~~GY~ 155 (327)
++.+|....+......++....+.|..
T Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~G~~ 292 (471)
T TIGR02119 266 KAMHRAMIIGTIVVGIIMLGMHLAGVL 292 (471)
T ss_pred HHHhhhHhHHHHHHHHHHHHHHHHHHh
Confidence 778888777766555555544444433
No 73
>PRK01844 hypothetical protein; Provisional
Probab=26.33 E-value=1.5e+02 Score=21.24 Aligned_cols=26 Identities=8% Similarity=-0.044 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020386 301 TFSFICLLVTIIGLIGSIEGLISAKL 326 (327)
Q Consensus 301 ~~~~~g~i~~v~gt~~si~~li~~~~ 326 (327)
.+.++++++|++|...-.|...+++.
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~l 33 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777766666666666653
No 74
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=24.85 E-value=1.7e+02 Score=21.79 Aligned_cols=56 Identities=9% Similarity=0.159 Sum_probs=34.0
Q ss_pred HHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386 99 QALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 158 (327)
Q Consensus 99 ~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 158 (327)
...|++..+-.|...+.+..++=.+| +...++.....+++. .+-+.+|++.|..||
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~s~~--~~~~wRalSii~FIl--G~vl~lGilifs~y~ 70 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNTSNV--TDYVWRALSVTCFIV--GAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCC--cchhHHHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 34677777777777777777655454 223333333344433 334567889999998
No 75
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.04 E-value=3.4e+02 Score=20.79 Aligned_cols=15 Identities=7% Similarity=0.198 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 020386 301 TFSFICLLVTIIGLI 315 (327)
Q Consensus 301 ~~~~~g~i~~v~gt~ 315 (327)
.++++|+++|....|
T Consensus 79 ~~lllGv~~G~~n~w 93 (100)
T TIGR02230 79 TMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666655443
No 76
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=22.12 E-value=4.5e+02 Score=24.31 Aligned_cols=26 Identities=4% Similarity=0.060 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020386 300 RTFSFICLLVTIIGLIGSIEGLISAK 325 (327)
Q Consensus 300 ~~~~~~g~i~~v~gt~~si~~li~~~ 325 (327)
..+.+.|+++|.+|.+.++++.+...
T Consensus 281 ~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 281 LLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888999999999998877653
No 77
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=21.12 E-value=1.5e+02 Score=19.70 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=18.8
Q ss_pred hHHHHhhcCCCC-ccccchhhHHHHHHHHH
Q 020386 114 LLEIQDTLKSPP-PENKTMKMASMISIFIT 142 (327)
Q Consensus 114 ~~~i~~~M~~p~-p~~~~~~~~~~~s~~~~ 142 (327)
+-++.+|||+=+ |++++..+........+
T Consensus 5 ~~~~~~ElkkV~WPt~~e~~~~t~~Vi~~~ 34 (55)
T TIGR00964 5 FKEVKAELKKVVWPSRKELITYTIVVIVFV 34 (55)
T ss_pred HHHHHHHHhcCcCcCHHHHHhHHHHHHHHH
Confidence 456789998754 78888777554443333
No 78
>PRK12488 acetate permease; Provisional
Probab=21.06 E-value=8.6e+02 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 020386 28 LLFGAVQVVMSQIPDFHNMEWLSVIAAI 55 (327)
Q Consensus 28 ~i~~~v~~pl~~~~~l~~L~~~S~~~~v 55 (327)
++.+++..-....-=+++..|...+=.+
T Consensus 185 ii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 185 VIVGALMVLYVTFGGMLATTWVQIIKAV 212 (549)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4445555666667777777777765433
No 79
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=20.85 E-value=3.5e+02 Score=25.04 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020386 300 RTFSFICLLVTIIGLIGSIEGLISAK 325 (327)
Q Consensus 300 ~~~~~~g~i~~v~gt~~si~~li~~~ 325 (327)
..+..+|+++|.+|.+.++++-+...
T Consensus 281 ~~l~~~g~~lg~lgs~~s~~r~Lr~~ 306 (309)
T TIGR00439 281 GLLLGFCIALGVVGAWLATTQHLLCF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999877654
No 80
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=20.67 E-value=6.2e+02 Score=22.70 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCc
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEP 174 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~ 174 (327)
..++.-+|-+. -|+...=+|+.-++ ++|+.+|.+....=++.....++|+..-..+-++.. ..|+-+ ..
T Consensus 58 HP~lMviGfI~----l~GeAiL~YR~~r~---~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~NfyS-LH 126 (245)
T KOG1619|consen 58 HPVLMVIGFIY----LQGEAILIYRVFRY---TSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFYS-LH 126 (245)
T ss_pred chHHHHHHHHH----hccceeeeeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ccceee-HH
Confidence 35666565333 24444445665342 448899999888888888888888887777766555 233311 24
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccc
Q 020386 175 YWLIDLANACIVLHLVGGYQIFSQP 199 (327)
Q Consensus 175 ~~~~~~~~~~~~l~~~~sypl~~~p 199 (327)
+|.=..+-.++..|-+.+|-.+.+|
T Consensus 127 SWlGl~~v~ly~~Q~v~GF~tfl~p 151 (245)
T KOG1619|consen 127 SWLGLCVVILYSLQWVFGFFTFLFP 151 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6755566667778888877555554
No 81
>PLN02680 carbon-monoxide oxygenase
Probab=20.41 E-value=6.2e+02 Score=22.56 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCc
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEP 174 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~ 174 (327)
..+++.+|.+.+ + ++..+. ++..+.+ ++.+|.+....=....+..++|+..-..+.++ .++-+-++ -.
T Consensus 50 HPlLM~~Gfi~l-~-geAIL~--yr~~~~~----k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfyS--lH 117 (232)
T PLN02680 50 HPVLMVIGLVLL-N-GEAMLA--YKTVPGT----KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYS--LH 117 (232)
T ss_pred hHHHHHHHHHHH-H-HHHHhc--ccccccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccccc--HH
Confidence 356666664442 2 222222 3444433 77788888888888888888888664444443 33333333 24
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccc
Q 020386 175 YWLIDLANACIVLHLVGGYQIFSQP 199 (327)
Q Consensus 175 ~~~~~~~~~~~~l~~~~sypl~~~p 199 (327)
+|+=..+..++.+|.+..+..+..|
T Consensus 118 SWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 118 SWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5655556667778888887666555
No 82
>PRK00523 hypothetical protein; Provisional
Probab=20.24 E-value=2.6e+02 Score=20.01 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 020386 301 TFSFICLLVTIIGLIGSIEGLISAK 325 (327)
Q Consensus 301 ~~~~~g~i~~v~gt~~si~~li~~~ 325 (327)
.++++++++|++|...-.|...+++
T Consensus 9 ~l~i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777766666666666655
No 83
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.15 E-value=5.5e+02 Score=21.89 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCc
Q 020386 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEP 174 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~ 174 (327)
..++..+|.+.. .+...-+|+..++- +..++.+|.+....=....+..++|+..-..|-++. .+-+.++ -.
T Consensus 38 HP~lMv~Gfi~L----~geAiL~Yr~~~~~-~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlyS--lH 108 (179)
T cd08762 38 HPVLMVTGMVVL----YGNAALVYRIPLTW-GGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYS--LH 108 (179)
T ss_pred hHHHHHHHHHHH----HHHHHHhhcccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cccchhh--HH
Confidence 356665654433 23333344433310 112667788888888888888888876655555443 3433333 24
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccc
Q 020386 175 YWLIDLANACIVLHLVGGYQIFSQP 199 (327)
Q Consensus 175 ~~~~~~~~~~~~l~~~~sypl~~~p 199 (327)
+|+=..+-.++.+|.+..+..+..|
T Consensus 109 SWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 109 SWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5654455556777888877665555
No 84
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.10 E-value=3.1e+02 Score=22.40 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=41.6
Q ss_pred cchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHHHHHHHHHHHHHHHhhhhccccH
Q 020386 129 KTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPV 200 (327)
Q Consensus 129 ~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~ 200 (327)
++.+|.+....-....+..++|+..-..+-++. .+-+-++ --+|+=..+.+++.++.+..+..+..|-
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~S--lHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYS--LHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--Ccccccc--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 666777888887888888888874444443332 2322222 2356555566677778887775556663
Done!