Query 020386
Match_columns 327
No_of_seqs 136 out of 1289
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 16:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020386.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020386hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mcvi_ g.3.2.1 (I:) Trypsin i 12.2 43 0.0031 16.5 1.2 18 1-18 7-24 (28)
2 d2i5nh2 f.23.10.1 (H:1-36) Pho 5.9 1.5E+02 0.011 15.2 1.7 12 24-35 19-30 (36)
3 d1nuba2 g.3.11.3 (A:53-77) Dom 4.5 70 0.0051 15.6 -0.2 14 8-21 2-16 (26)
4 d1q90r_ f.23.12.1 (R:) ISP sub 4.4 3E+02 0.022 14.9 2.5 18 266-283 18-35 (39)
5 d1v54d_ f.23.1.1 (D:) Mitochon 3.8 4.9E+02 0.036 18.3 4.0 22 118-142 65-86 (144)
6 d1nekd_ f.21.2.2 (D:) Succinat 3.4 5.9E+02 0.043 16.5 7.7 25 258-282 42-66 (113)
7 d1wfpa_ g.80.1.1 (A:) Zinc fin 3.3 2.1E+02 0.015 18.0 1.3 18 6-23 46-64 (74)
8 d1wpga4 f.33.1.1 (A:1-124,A:24 3.2 5.3E+02 0.039 21.4 4.6 19 247-265 419-437 (472)
9 d1ciya3 f.1.3.1 (A:33-255) del 3.2 4.2E+02 0.031 19.8 3.5 27 243-269 6-32 (223)
10 d1h9ii_ g.3.2.1 (I:) Trypsin i 3.0 1.7E+02 0.012 14.5 0.4 16 2-17 8-23 (30)
No 1
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=12.20 E-value=43 Score=16.53 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=13.0
Q ss_pred CcccccccceecCCCCCC
Q 020386 1 MRAIQKSNCYHREGHNAP 18 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (327)
||-.|.+.|+--+.|+++
T Consensus 7 m~c~~dsdclagcvcgpn 24 (28)
T d1mcvi_ 7 MRCKQDSDCLAGCVCGPN 24 (28)
T ss_dssp CBCSSGGGSCTTCCBCTT
T ss_pred hhccccccccccceecCC
Confidence 667788888877777653
No 2
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=5.91 E-value=1.5e+02 Score=15.19 Aligned_cols=12 Identities=8% Similarity=0.415 Sum_probs=8.5
Q ss_pred chhHHHHHHHHH
Q 020386 24 TKHMLLFGAVQV 35 (327)
Q Consensus 24 ~~~~~i~~~v~~ 35 (327)
.+|.+|++++++
T Consensus 19 aqwlviwtvvll 30 (36)
T d2i5nh2 19 AQWLVIWTVVLL 30 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467788887764
No 3
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.50 E-value=70 Score=15.57 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=9.4
Q ss_pred cce-ecCCCCCCCCC
Q 020386 8 NCY-HREGHNAPCAY 21 (327)
Q Consensus 8 ~~~-~~~~~~~~c~~ 21 (327)
-|. |+++.+-.|.+
T Consensus 2 pclnhhck~gkvcev 16 (26)
T d1nuba2 2 PCQNHHCKHGKVCEL 16 (26)
T ss_dssp TTTTCCCCTTEEEEE
T ss_pred cccccccccCcEeee
Confidence 355 77777777764
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.44 E-value=3e+02 Score=14.87 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=11.2
Q ss_pred HhhhhhhhHHHHhhHHhh
Q 020386 266 LGALNFWPLAIYFPVEMY 283 (327)
Q Consensus 266 ~Ga~~~~~l~fi~P~l~y 283 (327)
.|+.+........|-.-|
T Consensus 18 ~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeEE
Confidence 466666666666665544
No 5
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.75 E-value=4.9e+02 Score=18.26 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=12.5
Q ss_pred HhhcCCCCccccchhhHHHHHHHHH
Q 020386 118 QDTLKSPPPENKTMKMASMISIFIT 142 (327)
Q Consensus 118 ~~~M~~p~p~~~~~~~~~~~s~~~~ 142 (327)
..||+.|+ ..++.++...++.+
T Consensus 65 ~ae~~~p~---gewK~v~g~~~~~i 86 (144)
T d1v54d_ 65 FAEMNRST---NEWKTVVGAAMFFI 86 (144)
T ss_dssp HHHHTCCC---SHHHHHHHHHHHHH
T ss_pred cccccCCC---CchhHHHHHHHHHH
Confidence 57888872 45566555444333
No 6
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=3.45 E-value=5.9e+02 Score=16.46 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=14.3
Q ss_pred chHHHHHHHhhhhhhhHHHHhhHHh
Q 020386 258 YFNQVLGVLGALNFWPLAIYFPVEM 282 (327)
Q Consensus 258 ~~~~v~~l~Ga~~~~~l~fi~P~l~ 282 (327)
+.+.+.+..+......+..++=...
T Consensus 42 ~y~~~~~~~~~~~~~il~~l~l~~~ 66 (113)
T d1nekd_ 42 TYEVWIGFFASAFTKVFTLLALFSI 66 (113)
T ss_dssp CHHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhChHHHHHHHHHHHHH
Confidence 4667777776666555554444433
No 7
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.28 E-value=2.1e+02 Score=17.96 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=12.0
Q ss_pred cccce-ecCCCCCCCCCCC
Q 020386 6 KSNCY-HREGHNAPCAYGD 23 (327)
Q Consensus 6 ~~~~~-~~~~~~~~c~~~~ 23 (327)
+.||- |+--++++|+++.
T Consensus 46 ~~FC~~HR~pe~H~C~fDy 64 (74)
T d1wfpa_ 46 STFCGTHRYPESHECQFDF 64 (74)
T ss_dssp CEECTTTCSTTTSCCCSCT
T ss_pred ChhhhccCCccCcCCCCcc
Confidence 45666 7767777888653
No 8
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.21 E-value=5.3e+02 Score=21.44 Aligned_cols=19 Identities=5% Similarity=0.093 Sum_probs=10.9
Q ss_pred HHHHHHHHhccchHHHHHH
Q 020386 247 VSTTAVAIIFPYFNQVLGV 265 (327)
Q Consensus 247 ~~~~~iA~~vP~~~~v~~l 265 (327)
++..++...+|.++++++.
T Consensus 419 ~~l~~~i~yiP~l~~vf~~ 437 (472)
T d1wpga4 419 MSLHFLILYVDPLPMIFKL 437 (472)
T ss_dssp HHHHHHHHHSTTTHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHcc
Confidence 3344445668877766544
No 9
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=3.20 E-value=4.2e+02 Score=19.78 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHhhh
Q 020386 243 TAYVVSTTAVAIIFPYFNQVLGVLGAL 269 (327)
Q Consensus 243 ~~~v~~~~~iA~~vP~~~~v~~l~Ga~ 269 (327)
+.+-++.++++.++|..+.+++++|-+
T Consensus 6 i~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 6 ISLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred hHHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 344567788888999999888766544
No 10
>d1h9ii_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=2.99 E-value=1.7e+02 Score=14.47 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=9.4
Q ss_pred cccccccceecCCCCC
Q 020386 2 RAIQKSNCYHREGHNA 17 (327)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (327)
|-.|.+.|+--+.|.+
T Consensus 8 rckqdsdclagcvc~~ 23 (30)
T d1h9ii_ 8 RCKQDSDCLAGCVCTN 23 (30)
T ss_dssp BCSSGGGSCTTCEECT
T ss_pred EeccCccccceeEecC
Confidence 5566777765555443
Done!