BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020387
         (327 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
           Escherichia Coli
 pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
           Escherichia Coli
 pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
           Escherichia Coli In Complex With
           Adenosine-5`-Diphosphate
 pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
           Escherichia Coli In Complex With
           Adenosine-5`-Diphosphate
 pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
           Escherichia Coli In Complex With Acetyl Coenzyme A
 pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
           Escherichia Coli In Complex With Acetyl Coenzyme A
          Length = 564

 Score = 32.7 bits (73), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 21/112 (18%)

Query: 212 VVDLRRNLFPTPFSFFVGSTFEGAPREQQALLEL--EDTAARLKREKETLRNTLNYLTAA 269
           + +L++N F TP  +             + +L +  +  A ++  +  T    LNY  A 
Sbjct: 330 LAELKQNTFTTPLVW-------------RDILNIHKQQNAQKMHEKLSTDTQPLNYFNAL 376

Query: 270 SAVKDVFPSSRWCIFFHYPLGCSENCLLPANVFEVSELGTPARFSDCGSWPV 321
           SAV+DV   ++      Y +    N L   N   + ++  P R  DCG+W V
Sbjct: 377 SAVRDVLRENQDI----YLVNEGANTL--DNARNIIDMYKPRRRLDCGTWGV 422


>pdb|1MHM|A Chain A, Crystal Structure Of S-Adenosylmethionine Decarboxylase
           From Potato
          Length = 288

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 228 VGSTFEGAPREQQALLELEDTAARLKREK-----ETLRNTLNYLTAASAVKDVFPSSRWC 282
           V S   G+ +    +  LE     L REK     +T  ++  ++T  S ++ + P S  C
Sbjct: 95  VYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEIC 154

Query: 283 IFFHYPLGCSENCLLPANV 301
            F   P G S N +  A V
Sbjct: 155 DFEFEPCGYSMNSIEGAAV 173


>pdb|3FIE|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin
           Serotype F Catalytic Domain With An Inhibitor (Inh1)
 pdb|3FIE|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin
           Serotype F Catalytic Domain With An Inhibitor (Inh1)
 pdb|3FII|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin
           Serotype F Catalytic Domain With An Inhibitor (Inh2)
          Length = 427

 Score = 28.1 bits (61), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 158 SVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVET--YMKDVIRLSNRLNGKPEKEVV 213
           + + T P      A LE+  S   D + L  D E   Y+K  I+L  R+N  P  EV+
Sbjct: 50  NTIGTDPSDFDPPASLENGSSAYYDPNYLTTDAEKDRYLKTTIKLFKRINSNPAGEVL 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,546,036
Number of Sequences: 62578
Number of extensions: 309294
Number of successful extensions: 710
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 4
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)