Query 020387
Match_columns 327
No_of_seqs 213 out of 1230
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10787 DNA-binding ATP-depen 100.0 4.9E-41 1.1E-45 354.0 22.3 250 71-323 7-294 (784)
2 COG0466 Lon ATP-dependent Lon 100.0 1.6E-39 3.5E-44 329.2 19.5 247 74-323 9-295 (782)
3 TIGR00763 lon ATP-dependent pr 100.0 6.8E-38 1.5E-42 331.4 21.0 247 76-323 1-292 (775)
4 PF02190 LON: ATP-dependent pr 100.0 2E-29 4.3E-34 224.1 21.6 186 74-261 1-205 (205)
5 COG2802 Uncharacterized protei 99.9 3.5E-25 7.6E-30 198.4 20.5 190 70-265 7-210 (221)
6 KOG2004 Mitochondrial ATP-depe 99.8 4.4E-19 9.6E-24 180.4 15.9 249 67-316 61-376 (906)
7 KOG4159 Predicted E3 ubiquitin 99.4 1.7E-13 3.7E-18 134.2 5.9 135 43-177 143-283 (398)
8 smart00464 LON Found in ATP-de 99.3 1.3E-11 2.8E-16 97.5 9.9 88 75-258 2-92 (92)
9 KOG1400 Predicted ATP-dependen 97.9 1.4E-05 3.1E-10 76.3 5.7 217 70-312 61-346 (371)
10 PRK10865 protein disaggregatio 80.5 2 4.4E-05 47.1 4.5 62 220-287 389-460 (857)
11 PF11058 Ral: Antirestriction 34.7 19 0.00041 25.7 0.8 36 275-310 4-42 (66)
12 PF10569 Thiol-ester_cl: Alpha 21.1 45 0.00097 21.0 0.7 13 282-294 3-15 (31)
13 PF10654 DUF2481: Protein of u 20.5 1.1E+02 0.0023 25.4 2.9 44 242-285 2-53 (126)
14 COG5296 Transcription factor i 20.5 8.3E+02 0.018 24.7 9.5 36 223-258 345-380 (521)
No 1
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=100.00 E-value=4.9e-41 Score=353.95 Aligned_cols=250 Identities=18% Similarity=0.292 Sum_probs=221.0
Q ss_pred CcceeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecC-------CCCcceeeeEEEEEEeeEeCCC
Q 020387 71 DVVELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDA-------VSGTSEVGCVGEIVKHECLVDD 142 (327)
Q Consensus 71 ~~~~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~-------~~~ly~vGtla~I~~v~~l~dG 142 (327)
++..+|+||++ +|+|||+.+||+||+++|++||++|+++++.||+|++++ .+++|+|||+|+|+++.+++||
T Consensus 7 ~~~~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~~~~gvv~~k~~~~~~p~~~dLy~VGtla~I~~~~~l~DG 86 (784)
T PRK10787 7 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDG 86 (784)
T ss_pred CCceEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcccccCccEEEEEEEeeECCCC
Confidence 34589999999 999999999999999999999999999999999999854 1478999999999999999999
Q ss_pred eEEEEEEeeeeEEEEEEeecCCeEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhhhhCCCCc
Q 020387 143 RFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPT 222 (327)
Q Consensus 143 ~~~Ilv~G~~R~kI~~~~~~~p~l~A~Ve~l~d~~~~~~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~l~~~~dp~ 222 (327)
++.|+++|++||+|.++.+.+||+.|+|++++++..++.+.+++.+.+.+.+.++..+..... .+.+..+...+||.
T Consensus 87 ~~~Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~~~~e~~al~~~ll~~~~~~~~l~~~~~---~e~~~~~~~~ddp~ 163 (784)
T PRK10787 87 TVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIP---PEVLTSLNSIDDPA 163 (784)
T ss_pred eEEEEEEEEEEEEEEEEEcCCCCEEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhcccCC---HHHHhhhhccccHH
Confidence 999999999999999998899999999999988654445667888889998888887654332 22234556778999
Q ss_pred hHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhccccchhhHhhCCC-------Cc
Q 020387 223 PFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAV----KDVFPSSRWCIFFHYPL-------GC 291 (327)
Q Consensus 223 ~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~l~~~I----k~~~~k~Qre~~l~~~~-------~~ 291 (327)
.++|++|+.++++.++||+|||+.|+.+|+++++.+|+++++.++++++| +++|+|+|||||||++. |-
T Consensus 164 ~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~ 243 (784)
T PRK10787 164 RLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGE 243 (784)
T ss_pred HHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccC
Confidence 99999999999999999999999999999999999999999999999999 77999999999999922 21
Q ss_pred --------------ccccCCCccccc--ccccCCCCcccC---CCCCcccC
Q 020387 292 --------------SENCLLPANVFE--VSELGTPARFSD---CGSWPVSY 323 (327)
Q Consensus 292 --------------~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~ 323 (327)
++.+.+|++|.+ .+|+.++++++. |.+.+|||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~y 294 (784)
T PRK10787 244 MDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGY 294 (784)
T ss_pred CCcchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 788999999999 999999999777 88888887
No 2
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=329.18 Aligned_cols=247 Identities=22% Similarity=0.342 Sum_probs=225.5
Q ss_pred eeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcC-CcEEEEEecC-------CCCcceeeeEEEEEEeeEeCCCeE
Q 020387 74 ELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTD-LRFGVIYSDA-------VSGTSEVGCVGEIVKHECLVDDRF 144 (327)
Q Consensus 74 ~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~-~~igvv~~~~-------~~~ly~vGtla~I~~v~~l~dG~~ 144 (327)
.+|++|++ .|+||+|++||.|+++.++++++.++.++ +.+++++|++ .+++|++||+|+|.++.++|||++
T Consensus 9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~p~~~dly~vGt~a~I~q~~~lpdg~~ 88 (782)
T COG0466 9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDDLYEVGTLAKILQILKLPDGTV 88 (782)
T ss_pred cceeEEecCceeCCCceeeEEcCChhHHHHHHHHHhCCCCEEEEEEecccccCCCChhhhhhcchheeeeeeeeCCCCcE
Confidence 79999999 99999999999999999999999999996 7899999964 258999999999999999999999
Q ss_pred EEEEEeeeeEEEEEEeecCCeEEEEEEEecCCCCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhhhhCCCCch
Q 020387 145 FLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSG-EEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTP 223 (327)
Q Consensus 145 ~Ilv~G~~R~kI~~~~~~~p~l~A~Ve~l~d~~~~-~~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~l~~~~dp~~ 223 (327)
+|+|+|++|++|.++...+.++.|+++.+++.+.. +.+.+++.+.+...|++++.++..+. ++.+..+..+++|+.
T Consensus 89 kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~---~e~l~~~~~i~~~~k 165 (782)
T COG0466 89 KVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIP---PEELQSLNSIDDPGK 165 (782)
T ss_pred EEEEEeeeeEEEEeeccCCCceEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhccCCC---HHHHHHHhcccchHH
Confidence 99999999999999999999999999999987654 56789999999999999998765432 555666778899999
Q ss_pred HHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhccccchhhHhhCC-------CCc-
Q 020387 224 FSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAV----KDVFPSSRWCIFFHYP-------LGC- 291 (327)
Q Consensus 224 Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~l~~~I----k~~~~k~Qre~~l~~~-------~~~- 291 (327)
|+|++|++++++.++||++||+.|+.+||++++.++.+|++.++++++| +++|+|+|||||||+| +|-
T Consensus 166 lad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~ 245 (782)
T COG0466 166 LADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGED 245 (782)
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999 7799999999999992 221
Q ss_pred -------------ccccCCCccccc--ccccCCCCcccC---CCCCcccC
Q 020387 292 -------------SENCLLPANVFE--VSELGTPARFSD---CGSWPVSY 323 (327)
Q Consensus 292 -------------~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~ 323 (327)
++..++|++|++ .+|+-||++++. |++.+|||
T Consensus 246 ~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnY 295 (782)
T COG0466 246 DDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNY 295 (782)
T ss_pred ccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 889999999999 999999999877 88888887
No 3
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=100.00 E-value=6.8e-38 Score=331.35 Aligned_cols=247 Identities=22% Similarity=0.339 Sum_probs=210.9
Q ss_pred eEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCCcEE-EEEecC-------CCCcceeeeEEEEEEeeEeCC---Ce
Q 020387 76 PLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFG-VIYSDA-------VSGTSEVGCVGEIVKHECLVD---DR 143 (327)
Q Consensus 76 PllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~~ig-vv~~~~-------~~~ly~vGtla~I~~v~~l~d---G~ 143 (327)
||||++ +|+|||+.+||+||+++|++||++|+.+++.|+ ++++++ .+++|.|||+|+|+++.+++| |.
T Consensus 1 Pl~PLr~~VLfPg~~lpL~Ife~r~i~mV~~al~~~~~~~~vv~~k~~~~~~p~~~~ly~VGt~a~I~~~~~~~d~~dG~ 80 (775)
T TIGR00763 1 PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGLFLQKDDDNEEPEEDDIYSVGVVAQILEMLPLPSSGTAT 80 (775)
T ss_pred CeEcCCCCccCCCcceeEecCCHHHHHHHHHHHhcCCcEEEEEEecCcccCCCCcccccCCceEEEEEEeccCCCCCCCe
Confidence 899999 999999999999999999999999999888887 777753 247899999999999999555 99
Q ss_pred EEEEEEeeeeEEEEEEeecCCeEEEEEEEecCCCC--CchhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhhhhCCCC
Q 020387 144 FFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPS--GEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFP 221 (327)
Q Consensus 144 ~~Ilv~G~~R~kI~~~~~~~p~l~A~Ve~l~d~~~--~~~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~l~~~~dp 221 (327)
+.|+|+|++||+|.++.+++||+.|+|+++++++. +..+.+++.+.+.+.++++..+.... ...++.+..+...++|
T Consensus 81 ~~Ilv~G~~R~rI~~~~~~~p~~~A~V~~l~~~~~~~~~~e~~al~~~l~~~~~el~~l~~l~-~~~~e~~~~~~~~~dp 159 (775)
T TIGR00763 81 YKVVVEGLRRIRIKELSDKGGYLVVRVDNLKEEPFDKDDEEIKALTREIKETFRELISLSKLF-REQPALLSALEDIDEP 159 (775)
T ss_pred EEEEEEEEEEEEEEEEecCCCcEEEEEEEecCcCCCCCcHHHHHHHHHHHHHHHHHHHhCccc-cCCHHHHHHHhccCCH
Confidence 99999999999999999999999999999988642 34568899999999999998765410 1112333455667899
Q ss_pred chHHHHHhhcCCCC-HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhccccchhhHhhC-------CC
Q 020387 222 TPFSFFVGSTFEGA-PREQQALLELEDTAARLKREKETLRNTLNYLTAASAV----KDVFPSSRWCIFFHY-------PL 289 (327)
Q Consensus 222 ~~Lad~va~~l~l~-~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~l~~~I----k~~~~k~Qre~~l~~-------~~ 289 (327)
..++|++|+.++++ .++||+|||+.|+.+|+++++.+|.+|++.++++++| +++|+|+|||||||+ .+
T Consensus 160 ~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eL 239 (775)
T TIGR00763 160 GRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKEL 239 (775)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 9999999999999999999999999999999999999 778999999999998 12
Q ss_pred Cc--------------ccccCCCccccc--ccccCCCCcccC---CCCCcccC
Q 020387 290 GC--------------SENCLLPANVFE--VSELGTPARFSD---CGSWPVSY 323 (327)
Q Consensus 290 ~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~ 323 (327)
|- ++++.+|++|++ .+|+.++++++. |.+.+|+|
T Consensus 240 g~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~y 292 (775)
T TIGR00763 240 GIEKDDKDELEKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNY 292 (775)
T ss_pred CCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 21 788999999999 777777777655 66655554
No 4
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=99.97 E-value=2e-29 Score=224.06 Aligned_cols=186 Identities=34% Similarity=0.563 Sum_probs=133.6
Q ss_pred eeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCCc-EEEEEe---------cCCCCcceeeeEEEEEEeeEeCCC
Q 020387 74 ELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLR-FGVIYS---------DAVSGTSEVGCVGEIVKHECLVDD 142 (327)
Q Consensus 74 ~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~~-igvv~~---------~~~~~ly~vGtla~I~~v~~l~dG 142 (327)
+||+||++ .|+|||+++||+|++++|++|+++++.+++. ||+++. ...+++|.|||+|+|+++.+.+||
T Consensus 1 ~lPv~pl~~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~~I~~~~~~~dg 80 (205)
T PF02190_consen 1 ELPVFPLRNQVLFPGQTLPIHIFEPRYIALLKRALDNNNPYFGIFLVKSNKDDSDEPSIDDLYSVGTLARIIRVEELPDG 80 (205)
T ss_dssp EEEEEEESSS---TTBEEEEEE-SHHHHHHHHHHHTTTSE-EEEEEE-EBSSTSSSS-GGGB-SEEEEEEEEEEEESTTS
T ss_pred CEEEEEeCCcccCCCeeEEEEECCHHHHHHHHHHHhcCCCceeEEeecccCCcccCCcccccccceEEEEEEEEEecCCC
Confidence 58999999 9999999999999999999999999998775 888887 123568999999999999999999
Q ss_pred eEEEEEEeeeeEEEEEE---eecCCeEEEEEEEecCC-CCCc----hhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHh
Q 020387 143 RFFLICKGQERFRVTSV---VRTKPYLVAEVAWLEDR-PSGE----EDLDALANDVETYMKDVIRLSNRLNGKPEKEVVD 214 (327)
Q Consensus 143 ~~~Ilv~G~~R~kI~~~---~~~~p~l~A~Ve~l~d~-~~~~----~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~ 214 (327)
++.|.++|++||+|.++ .+++||++|+|+.++|. +... .+.+++...+.+.+.++......+. .......
T Consensus 81 ~~~v~~~g~~R~ki~~~~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (205)
T PF02190_consen 81 TYKVLVQGLQRFKILKINNETQEDPYLVAEVEPLEDVEPPESDELDEEIKALLRELIKKIKEAYENLKELL--PWDLLLK 158 (205)
T ss_dssp -EEEEEEEEEEEEEEEEEE--ECSSCEEEEEEEE-----GCGHHHHHHHHHHHHHHHHHHH---HHHCCC---CHHHHHH
T ss_pred CEEEEEEEEEEEEEEEEecccccCCceEEEEEEecccCccchhhhHHHHHHHHHHHHHHHHHHHHhhhccc--chhhhhh
Confidence 99999999999999999 56999999999999873 3221 2334444444444442112221111 1222344
Q ss_pred hhhCCCCchHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHH
Q 020387 215 LRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRN 261 (327)
Q Consensus 215 l~~~~dp~~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~ 261 (327)
+...++|..|+||+|+.++++.++||+||++.|+.+|+++++++|++
T Consensus 159 ~~~~~~~~~l~~~~~~~l~~~~~ek~~lL~~~~~~~Rl~~l~~~L~~ 205 (205)
T PF02190_consen 159 INNPDNPPELADFVASLLPLSPEEKQELLETDDLKERLKLLIELLKK 205 (205)
T ss_dssp TTTHHHHHHHHHHHHHHS---HHHHHHHHC--SHHHHHHHHHHHHH-
T ss_pred hhccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 55666788899999999999999999999999999999999999975
No 5
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.94 E-value=3.5e-25 Score=198.45 Aligned_cols=190 Identities=34% Similarity=0.491 Sum_probs=150.1
Q ss_pred CCcceeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecCC--------CCcceeeeEEEEEEeeEeC
Q 020387 70 DDVVELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAV--------SGTSEVGCVGEIVKHECLV 140 (327)
Q Consensus 70 ~~~~~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~~--------~~ly~vGtla~I~~v~~l~ 140 (327)
+-+..||+|||+ .|+|||..+|++||+++|+.|++.|+++++.||+|..+.+ ..+..|||+|+|+++...+
T Consensus 7 ~~p~~LplFPL~~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~r~fGvv~i~~~~~~~~~~~~~ls~VGcla~I~~~~~~~ 86 (221)
T COG2802 7 DLPLELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGREVGGGLPPELSDVGCLARITEFEELG 86 (221)
T ss_pred CccceeeccccccccccCCCCCchhhccHHHHHHHHHHHhcCCceeEEEecccccccCCCcchhhccceeEEEeEeeEcC
Confidence 446789999998 9999999999999999999999999999999999997541 2578999999999999999
Q ss_pred CCeEEEEEEeeeeEEEEEEee-cCCeEEEEEEEecCCCCCc---hhHHHHHH-HHHHHHHHHHHHHhhcCCCChHHHHhh
Q 020387 141 DDRFFLICKGQERFRVTSVVR-TKPYLVAEVAWLEDRPSGE---EDLDALAN-DVETYMKDVIRLSNRLNGKPEKEVVDL 215 (327)
Q Consensus 141 dG~~~Ilv~G~~R~kI~~~~~-~~p~l~A~Ve~l~d~~~~~---~E~~aL~~-~l~~~~~~l~~l~~~l~~~~~~~~~~l 215 (327)
||++.|.++|.+||+|.++.. .+||..+.+++.+|.+... .|.+.... .+...++.+.+... ...+...
T Consensus 87 DGr~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~~~~~~~a~evdr~~~~~l~~~~r~~~~~~~-----l~~d~~~- 160 (221)
T COG2802 87 DGRYLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDGAEEVDRRLDALLMRAARAYLQRLE-----LLADWES- 160 (221)
T ss_pred CCcEEEEEEeEEEEEEEEEecccCcceeeccccCCCCccCcchHHHHHHHHHHHHHHHHHHHhhhcc-----hhhhhcc-
Confidence 999999999999999999986 8999999999999987532 23332211 12222333322111 0111111
Q ss_pred hhCCCCchHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Q 020387 216 RRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNY 265 (327)
Q Consensus 216 ~~~~dp~~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~ 265 (327)
..-.++..+++-++..+++++.+||++|+..|+..|+..++.+++.....
T Consensus 161 ~~~~~~~~l~n~L~~llp~~~~~k~~ll~a~d~~~r~~~L~~~~e~l~a~ 210 (221)
T COG2802 161 YERASNADLANRLYMLLPFDPAEKQALLEAPDLPTRAERLIRLLEQLLAR 210 (221)
T ss_pred cccccHHHHHHHHHHhCCCChhHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 12346778888888999999999999999999999999999988776554
No 6
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.4e-19 Score=180.42 Aligned_cols=249 Identities=18% Similarity=0.253 Sum_probs=191.8
Q ss_pred CCCCCcceeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcC-CcEEEEEecCC---C-------------------
Q 020387 67 PKSDDVVELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTD-LRFGVIYSDAV---S------------------- 122 (327)
Q Consensus 67 ~~~~~~~~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~-~~igvv~~~~~---~------------------- 122 (327)
+.++...++|++|++ .++|||..+++.|..++.+++|++.+... .++|+++.++. +
T Consensus 61 ~~~~~~~~l~~Lpi~~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~qpyiG~fl~kdd~~~~~~~t~~~~vyi~~~~~~~~ 140 (906)
T KOG2004|consen 61 SVPDVPPRLPALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINEVYILEVFPGKD 140 (906)
T ss_pred CCcccCcccceeeccCCCcCCCceeEEEecCHHHHHHHHHHHHhcCcccceeeeccCCCCCcceeeccccceeeeecCCc
Confidence 456777899999999 99999999999999999999999988764 58999887541 0
Q ss_pred ---------CcceeeeEEEEEEeeEeCCCeEEEEEEeeeeEEEEEEeecC--CeEEEEEEEecCCCC-CchhHHHHHHHH
Q 020387 123 ---------GTSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTK--PYLVAEVAWLEDRPS-GEEDLDALANDV 190 (327)
Q Consensus 123 ---------~ly~vGtla~I~~v~~l~dG~~~Ilv~G~~R~kI~~~~~~~--p~l~A~Ve~l~d~~~-~~~E~~aL~~~l 190 (327)
....+++++.|.+-.+...+.+.+.+.|..|++|.+...+. ..+.++|+.+.+.+. .+++.+++...+
T Consensus 141 ~~~~~l~~hRr~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~i~e~~~e~~~~vl~v~v~~v~~e~~~~~~~~ka~~~ei 220 (906)
T KOG2004|consen 141 KLRMVLYPHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFKKDEEIKALTSEI 220 (906)
T ss_pred chhhhhhhhhheeeeeeccccccccccccceeecccccccccchhhhccccCCceeeeeecccCCccCcchHHHHHHHHH
Confidence 01223333344432222346788899999999999887653 467778888776654 355699999999
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHhhhhCCCCchHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020387 191 ETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAAS 270 (327)
Q Consensus 191 ~~~~~~l~~l~~~l~~~~~~~~~~l~~~~dp~~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~l~~ 270 (327)
...+.+++..+..+...+. .+.......+|..|+|+.|+....+..+.|++|+..|+.+||++.+.+|+++++..+|++
T Consensus 221 ~~t~rdii~~n~l~r~~v~-~~~~~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ 299 (906)
T KOG2004|consen 221 LKTLRDIIAVNSLFREQVA-TLSQLIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQ 299 (906)
T ss_pred HHHHHHHHHhhHHHHHHHH-HHHHHhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887665431111 112234567899999999999999999999999999999999999999999999999999
Q ss_pred HH----hhhccccchhhHhhCCC-------C-----c----------ccccCCCccccc-----ccccCCCCcccCC
Q 020387 271 AV----KDVFPSSRWCIFFHYPL-------G-----C----------SENCLLPANVFE-----VSELGTPARFSDC 316 (327)
Q Consensus 271 ~I----k~~~~k~Qre~~l~~~~-------~-----~----------~~~~~~~~~~~~-----~~~~~~~~~~~~~ 316 (327)
+| .+++.+.||+|+|++|. | - ++...+|++|-. ++-+.+++-.+.|
T Consensus 300 ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sE 376 (906)
T KOG2004|consen 300 KIGKEVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSE 376 (906)
T ss_pred HhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccc
Confidence 99 55788999999999922 2 1 566889998865 6666666665543
No 7
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.7e-13 Score=134.22 Aligned_cols=135 Identities=43% Similarity=0.628 Sum_probs=119.0
Q ss_pred hhccCCCccccCCCCcccccCC--CCCCCCCcceeeEeecCcccCCCceeeEEeCcHHHHHHHHHHHhc-CCcEEEEEec
Q 020387 43 HRRKKPNYLRCSASSFSEKHHT--NSPKSDDVVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQT-DLRFGVIYSD 119 (327)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~LPllpLr~VlFPg~~~pL~V~ep~~~~av~~al~~-~~~igvv~~~ 119 (327)
..++.-..|.|.+.+|+.+++. ...+++.....|+|++.+..||++..|+++++++|..|+++++.. +..|+++..+
T Consensus 143 ~~~~li~~F~~~~~~~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~~rf~i~~sd 222 (398)
T KOG4159|consen 143 LLCKLITKFLEGSSSFSPKASEKSKEEESSRECESPLFPVCTLAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICLSD 222 (398)
T ss_pred HHHHHHHHhhhhhhccchhhhhhhccccccccccCCcccccccccccccCcHHHccchHHHHHHHHHhhcceeeeeeccc
Confidence 4445667788888889999988 466677788999999889999999999999999999999999998 5789999986
Q ss_pred CCCC---cceeeeEEEEEEeeEeCCCeEEEEEEeeeeEEEEEEeecCCeEEEEEEEecCCC
Q 020387 120 AVSG---TSEVGCVGEIVKHECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRP 177 (327)
Q Consensus 120 ~~~~---ly~vGtla~I~~v~~l~dG~~~Ilv~G~~R~kI~~~~~~~p~l~A~Ve~l~d~~ 177 (327)
.... .+.+||+.+|..+..+.||+..+...|-.|+++..+..+++|..|+|++++|.+
T Consensus 223 ~~~~~~~~~e~g~i~ei~~v~~l~dgrsv~~~~gk~r~r~~~~~~~d~y~~~~ve~l~d~~ 283 (398)
T KOG4159|consen 223 SSKGSGQAAEIGCILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQTDGYPVADVEYLEDRP 283 (398)
T ss_pred ccCCcchhhhccchhhhcccccccccchhhhhhcCcceeeeeecCCCcceeeeeeeeeCcH
Confidence 5333 689999999999999999999999999999999999999999999999999854
No 8
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=99.32 E-value=1.3e-11 Score=97.51 Aligned_cols=88 Identities=28% Similarity=0.423 Sum_probs=75.8
Q ss_pred eeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCC--cEEEEEecCCCCcceeeeEEEEEEeeEeCCCeEEEEEEee
Q 020387 75 LPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDL--RFGVIYSDAVSGTSEVGCVGEIVKHECLVDDRFFLICKGQ 151 (327)
Q Consensus 75 LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~--~igvv~~~~~~~ly~vGtla~I~~v~~l~dG~~~Ilv~G~ 151 (327)
+|++|++ .|+|||+++|+.+++++++++++.+.++++ .++++++++.+ .+
T Consensus 2 lpviPl~~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~~~~~i~~~~~~~~~----~~----------------------- 54 (92)
T smart00464 2 LPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQDDPT----ET----------------------- 54 (92)
T ss_pred ceEEEcCCCccCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEEEEEccCCC----CC-----------------------
Confidence 7999999 999999999999999999999999998776 55555554321 11
Q ss_pred eeEEEEEEeecCCeEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhhhhCCCCchHHHHHhhc
Q 020387 152 ERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTPFSFFVGST 231 (327)
Q Consensus 152 ~R~kI~~~~~~~p~l~A~Ve~l~d~~~~~~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~l~~~~dp~~Lad~va~~ 231 (327)
|..++||+|+.
T Consensus 55 ---------------------------------------------------------------------~~~~~~~~a~~ 65 (92)
T smart00464 55 ---------------------------------------------------------------------PEPLSDTIAAL 65 (92)
T ss_pred ---------------------------------------------------------------------chhhhHHHhhc
Confidence 45689999999
Q ss_pred CCCCHHHHHHhhccCCHHHHHHHHHHH
Q 020387 232 FEGAPREQQALLELEDTAARLKREKET 258 (327)
Q Consensus 232 l~l~~eeKqeLLE~~dv~eRL~~ll~l 258 (327)
++++.++||+|||+.|+.+|++++++|
T Consensus 66 ~~~~~~~~q~lL~~~~~~~Rl~~~~~~ 92 (92)
T smart00464 66 MPLELHEKQELLELEGTNKRLEKVIKL 92 (92)
T ss_pred ccccHHHHHHHHhcccHHHHHHHHhcC
Confidence 999999999999999999999998764
No 9
>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]
Probab=97.93 E-value=1.4e-05 Score=76.26 Aligned_cols=217 Identities=20% Similarity=0.198 Sum_probs=133.7
Q ss_pred CCcceeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhc--CCcEEEEEecC-CCCcceeeeEEEEEEeeEeCC--C-
Q 020387 70 DDVVELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQT--DLRFGVIYSDA-VSGTSEVGCVGEIVKHECLVD--D- 142 (327)
Q Consensus 70 ~~~~~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~--~~~igvv~~~~-~~~ly~vGtla~I~~v~~l~d--G- 142 (327)
+.+.++|+++.- +|+|||.++|+.+..|+-+.+++..... ++.|++.+.-+ ......-+|.++|.....-.| |
T Consensus 61 ~t~~~~p~~~~~~~v~~PgqtLPl~~i~~~~~s~~r~lvs~ar~~~F~vl~r~~v~~re~~r~tt~evd~~R~p~d~Fgn 140 (371)
T KOG1400|consen 61 DTTNWIPICGQVMAVLFPGQTLPLKFIDPQERSIVRRLVSSARDNGFVVLFRSDVPERESLRYTTTEVDAYRVPQDNFGN 140 (371)
T ss_pred CceeeecccCceeeEecCcccCcchhcCHHHHHHHHHHHHhhcCCceEEEecccchHHhhccccceeccccccchhhhhh
Confidence 346789999988 9999999999999999888888887776 66777776533 234455566666653211122 3
Q ss_pred -eEEEEEEeeeeEEEEEEee-cCCeEEEEEEEecCCCC-----C--------------------------ch--hHHHHH
Q 020387 143 -RFFLICKGQERFRVTSVVR-TKPYLVAEVAWLEDRPS-----G--------------------------EE--DLDALA 187 (327)
Q Consensus 143 -~~~Ilv~G~~R~kI~~~~~-~~p~l~A~Ve~l~d~~~-----~--------------------------~~--E~~aL~ 187 (327)
-..+...|+.|+++.++.. ..+.-.|.|+.+|+... + .. +.-.++
T Consensus 141 ~l~~~~~~G~y~~~vl~lR~qs~g~~e~~~qL~P~~~i~~~~~Sf~~~~avq~~~~n~~~ia~~~n~~p~s~e~dm~sla 220 (371)
T KOG1400|consen 141 ALSMVKAMGRYRCKVLKLRTQSLGRGEAEVQLLPDVEIPCLLPSFIPKSAVQLPAHNKCSIATRINGYPFSAERDMTSLA 220 (371)
T ss_pred hhhhhhhhcccccceeeecccCCCcccceEEeccccccccccccccchhhheecccCcceeccCCCCCccccccchhhhh
Confidence 2445568999999999953 45555667776663211 0 00 111111
Q ss_pred H-----H---------------HHHHHHH------HHHHHhhcCCCChHHHHhhh-hCCCCchHHHHHhhcCCCCHHHHH
Q 020387 188 N-----D---------------VETYMKD------VIRLSNRLNGKPEKEVVDLR-RNLFPTPFSFFVGSTFEGAPREQQ 240 (327)
Q Consensus 188 ~-----~---------------l~~~~~~------l~~l~~~l~~~~~~~~~~l~-~~~dp~~Lad~va~~l~l~~eeKq 240 (327)
. . ...++.. .++.+..|. +..+.. ....|..|++++|..+++....++
T Consensus 221 ~f~~i~sls~~h~~~ll~~~~was~tyqSy~la~rivenarl~y-----E~lk~ds~~~kpivlSf~~a~kihv~e~~~~ 295 (371)
T KOG1400|consen 221 VFRQIGSLSGFHGDDLLSWPKWASLTYQSYFLAKRIVENARLWY-----ELLKEDSAPGKPIVLSFKYAWKIHVCERCRE 295 (371)
T ss_pred hheehhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHH-----HhccccccCCCceEeehhhhhhhhhhHHHHH
Confidence 0 0 0000000 011111010 000011 134678899999999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHhhCCCCcccccCCCcccccccccCCCCc
Q 020387 241 ALLELEDTAARLKREKETLRNTLNYLTAASAVKDVFPSSRWCIFFHYPLGCSENCLLPANVFEVSELGTPAR 312 (327)
Q Consensus 241 eLLE~~dv~eRL~~ll~lL~~eie~l~l~~~Ik~~~~k~Qre~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (327)
.|+.+.++.-|+...+..++++--.. +| -|.-........|+|+--|+++-
T Consensus 296 hL~~~g~v~tRlq~e~~~~~k~ti~f-------------Ck--------~Cqt~ia~~~d~f~msk~g~qee 346 (371)
T KOG1400|consen 296 HLLWEGSVMTRLQREFFGIQKETITF-------------CK--------ECQTDIAENWDHFPMSKNGPQEE 346 (371)
T ss_pred HHHhhcccccchheeeecccchhhhh-------------hH--------hhchhhhhhhcccccccCCchHh
Confidence 99999999999988877766654332 00 12223355667778888888776
No 10
>PRK10865 protein disaggregation chaperone; Provisional
Probab=80.55 E-value=2 Score=47.06 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=50.6
Q ss_pred CCchHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhccccchhhH-hhC
Q 020387 220 FPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAAS---------AVKDVFPSSRWCIF-FHY 287 (327)
Q Consensus 220 dp~~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~l~~---------~Ik~~~~k~Qre~~-l~~ 287 (327)
....+.|.+++.+.++.+.+++.| +|++..+..|..+++.++.++ ++++.+++.|++|+ |++
T Consensus 389 kAi~LiD~aaa~~rl~~~~kp~~L------~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~e 460 (857)
T PRK10865 389 KAIDLIDEAASSIRMQIDSKPEEL------DRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEE 460 (857)
T ss_pred HHHHHHHHHhcccccccccChHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344689999999999999999888 788999999999888887764 44677889999998 554
No 11
>PF11058 Ral: Antirestriction protein Ral ; InterPro: IPR022759 Ral alleviates restriction and enhances modification by the E.coli restriction and modification system [].
Probab=34.66 E-value=19 Score=25.70 Aligned_cols=36 Identities=33% Similarity=0.629 Sum_probs=30.9
Q ss_pred hccccchhhHhhCCCCc---ccccCCCcccccccccCCC
Q 020387 275 VFPSSRWCIFFHYPLGC---SENCLLPANVFEVSELGTP 310 (327)
Q Consensus 275 ~~~k~Qre~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 310 (327)
-++-||+|--+..-.|| +|+.--|+..|.++|-||.
T Consensus 4 tidtnqwc~~f~~c~gckl~~ecmvkpeem~~v~edgk~ 42 (66)
T PF11058_consen 4 TIDTNQWCSQFKRCNGCKLQSECMVKPEEMFPVMEDGKY 42 (66)
T ss_pred eecchhHHHhhhcccCcccchhhccCHHHhceecccCch
Confidence 36779999888888999 8888889999999998885
No 12
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=21.14 E-value=45 Score=20.98 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=8.3
Q ss_pred hhHhhCCCCcccc
Q 020387 282 CIFFHYPLGCSEN 294 (327)
Q Consensus 282 e~~l~~~~~~~~~ 294 (327)
+.++|+|.||.|.
T Consensus 3 ~~Li~~P~GCgEQ 15 (31)
T PF10569_consen 3 DSLIRYPYGCGEQ 15 (31)
T ss_dssp GGGSSS--SSTTH
T ss_pred HHHHhcCCCcHHH
Confidence 4578889999774
No 13
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.49 E-value=1.1e+02 Score=25.41 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=28.9
Q ss_pred hhccCCHHHHHHHHHHHHHHH----HHHHHHHHHH----hhhccccchhhHh
Q 020387 242 LLELEDTAARLKREKETLRNT----LNYLTAASAV----KDVFPSSRWCIFF 285 (327)
Q Consensus 242 LLE~~dv~eRL~~ll~lL~~e----ie~l~l~~~I----k~~~~k~Qre~~l 285 (327)
++|+..-++|-+.++.+|.++ -+...|++++ ++.-++.||-|+=
T Consensus 2 vme~t~NKerQreIIsyl~n~dl~~~~~k~LqkeLn~Lm~~nTEeK~kt~~~ 53 (126)
T PF10654_consen 2 VMEITENKERQREIISYLVNNDLSFSKRKELQKELNQLMNENTEEKMKTYWT 53 (126)
T ss_pred hhhhhhhHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 467777788888888887753 3445566666 4444566666653
No 14
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=20.45 E-value=8.3e+02 Score=24.74 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=21.8
Q ss_pred hHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHH
Q 020387 223 PFSFFVGSTFEGAPREQQALLELEDTAARLKREKET 258 (327)
Q Consensus 223 ~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~l 258 (327)
..++.|+....+.+.-.-.+++-+-+.+|++..+++
T Consensus 345 eis~~V~~k~e~~~k~sNvi~eKt~Lrqkrq~A~e~ 380 (521)
T COG5296 345 EISKMVACKDEVHPKRSNVIHEKTELRQKRQRAIEL 380 (521)
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHc
Confidence 445566665555555555566666666776666554
Done!