Query 020387
Match_columns 327
No_of_seqs 213 out of 1230
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljc_A ATP-dependent protease 100.0 7.1E-46 2.4E-50 343.1 22.1 221 66-289 9-241 (252)
2 3m65_A ATP-dependent protease 100.0 1.2E-39 4E-44 293.2 24.8 195 72-269 6-208 (209)
3 1zbo_A Hypothetical protein BP 100.0 4.2E-36 1.4E-40 270.2 22.2 186 73-267 2-204 (210)
4 2ane_A ATP-dependent protease 99.9 2.4E-25 8.1E-30 185.1 15.5 110 65-174 8-125 (125)
5 1wv8_A TT1413, hypothetical pr 34.2 66 0.0022 23.4 4.8 48 154-201 4-52 (73)
6 4aqz_A PILQ, type IV pilus bio 22.1 2.5E+02 0.0087 22.6 6.9 79 83-174 51-137 (138)
7 1upt_B Golgi autoantigen, golg 15.4 83 0.0028 22.0 2.1 29 223-251 25-53 (60)
8 3l9k_W Dynein intermediate cha 12.2 2.7E+02 0.0093 17.5 3.7 30 234-263 1-30 (38)
9 3n94_A Fusion protein of malto 9.9 2.6E+02 0.009 26.2 4.5 83 242-325 353-458 (475)
10 1n1i_A Merozoite surface prote 9.4 81 0.0028 24.5 0.5 15 49-63 89-103 (105)
No 1
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=100.00 E-value=7.1e-46 Score=343.11 Aligned_cols=221 Identities=17% Similarity=0.316 Sum_probs=196.9
Q ss_pred CCCCCCcceeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecC-------CCCcceeeeEEEEEEee
Q 020387 66 SPKSDDVVELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDA-------VSGTSEVGCVGEIVKHE 137 (327)
Q Consensus 66 ~~~~~~~~~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~-------~~~ly~vGtla~I~~v~ 137 (327)
.+|.-.+.++||||++ +|+|||+++||+||+++|++||++|+++++.||+|++++ .+++|+|||+|+|.++.
T Consensus 9 ~~~~~~~~~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~~~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~ 88 (252)
T 3ljc_A 9 NPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQML 88 (252)
T ss_dssp -----CCCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSSCCSSSBCSEEEEEEECCCB
T ss_pred ChhhcCCCceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCCCCccchhheeEEEEEEEEE
Confidence 3444456679999999 999999999999999999999999999998999999864 25799999999999999
Q ss_pred EeCCCeEEEEEEeeeeEEEEEEeecCCeEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhhhh
Q 020387 138 CLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRR 217 (327)
Q Consensus 138 ~l~dG~~~Ilv~G~~R~kI~~~~~~~p~l~A~Ve~l~d~~~~~~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~l~~ 217 (327)
+++||+++|+++|.+||+|.++.+.+||+.|+|++++++...+.+.+++.+.+++.|.++..++..++ .+....+..
T Consensus 89 ~lpdG~~~v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~~~~~~e~~al~~~l~~~~~~~~~l~~~~~---~e~~~~~~~ 165 (252)
T 3ljc_A 89 KLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIP---PEVLTSLNS 165 (252)
T ss_dssp CCTTSCEEEEEEEEEEEECSEEEEETTEEEEECCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCSSC---HHHHHHTTS
T ss_pred ECCCCeEEEEEEEEEEEEEEEEEcCCCcEEEEEEeecCCCCCChHHHHHHHHHHHHHHHHHHhcccCC---HHHHHHHHc
Confidence 99999999999999999999999999999999999988765556788999999999999988665443 223356777
Q ss_pred CCCCchHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhccccchhhHhhCCC
Q 020387 218 NLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAASAV----KDVFPSSRWCIFFHYPL 289 (327)
Q Consensus 218 ~~dp~~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~l~~~I----k~~~~k~Qre~~l~~~~ 289 (327)
.+||+.|+|++|++++++.++||+|||+.|+.+|+++++++|.+++++++++++| +++|+|+|||||||++.
T Consensus 166 ~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQl 241 (252)
T 3ljc_A 166 IDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQM 241 (252)
T ss_dssp CCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999 77999999999999854
No 2
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-39 Score=293.15 Aligned_cols=195 Identities=16% Similarity=0.250 Sum_probs=176.5
Q ss_pred cceeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecCC-------CCcceeeeEEEEEEeeEeCCCe
Q 020387 72 VVELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAV-------SGTSEVGCVGEIVKHECLVDDR 143 (327)
Q Consensus 72 ~~~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~~-------~~ly~vGtla~I~~v~~l~dG~ 143 (327)
+.++|+||++ +|+|||+++||+||+++|++|+++|+++++.||+|+|++. +++|+|||+|+|.++.+++||+
T Consensus 6 ~~~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~i~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~l~dG~ 85 (209)
T 3m65_A 6 KRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDEPGEDEIFTVGTYTKIKQMLKLPNGT 85 (209)
T ss_dssp EEEEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTTSEEEEEEBSSTTCSSCCGGGBCSEEEEEEEEEEEECTTSC
T ss_pred CCceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCCCCcchhhheeEEEEEEEEEECCCCe
Confidence 4579999999 9999999999999999999999999999999999998641 4789999999999999999999
Q ss_pred EEEEEEeeeeEEEEEEeecCCeEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhhhhCCCCch
Q 020387 144 FFLICKGQERFRVTSVVRTKPYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLSNRLNGKPEKEVVDLRRNLFPTP 223 (327)
Q Consensus 144 ~~Ilv~G~~R~kI~~~~~~~p~l~A~Ve~l~d~~~~~~E~~aL~~~l~~~~~~l~~l~~~l~~~~~~~~~~l~~~~dp~~ 223 (327)
++|+++|.+||+|.++.+++||+.|+|++++|+...+.+.+++.+.+++.|+++.+++..++ .+....+...+||+.
T Consensus 86 ~~v~v~G~~R~ri~~~~~~~~~~~a~v~~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~---~e~~~~~~~~~dp~~ 162 (209)
T 3m65_A 86 IRVLVEGLKRAHIVKYNEHEDYTSVDIQLIHEDDSKDTEDEALMRTLLDHFDQYIKISKKIS---AETYAAVTDIEEPGR 162 (209)
T ss_dssp EEEEEEEEEEEEEEEEEECSSSEEEEEEECCCC--CCSHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTCCCHHH
T ss_pred EEEEEEEEEEEEEEEEEcCCCcEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHccCCHHH
Confidence 99999999999999999999999999999998765556789999999999999988776543 222355678899999
Q ss_pred HHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 020387 224 FSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLTAA 269 (327)
Q Consensus 224 Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~l~ 269 (327)
|+|++|++++++.++||+|||+.|+.+|+++++++|++|+++++++
T Consensus 163 lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~l~~~L~~E~e~~~l~ 208 (209)
T 3m65_A 163 MADIVASHLPLKLKDKQDILETADVKDRLNKVIDFINNEKEVLEIE 208 (209)
T ss_dssp HHHHHHHHSCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999885
No 3
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=100.00 E-value=4.2e-36 Score=270.19 Aligned_cols=186 Identities=22% Similarity=0.275 Sum_probs=160.8
Q ss_pred ceeeEeecCcccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecCC---------CCcceeeeEEEEEEeeEeCCCe
Q 020387 73 VELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAV---------SGTSEVGCVGEIVKHECLVDDR 143 (327)
Q Consensus 73 ~~LPllpLr~VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~~---------~~ly~vGtla~I~~v~~l~dG~ 143 (327)
.++|+||+.+|+|||+++||+||+++|++||++|+++++.||+|++++. +++|.|||+|+|.++.+++||+
T Consensus 2 ~~lPl~PL~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~~glv~~~~~~~~~~~~~~~dl~~vGt~a~I~~~~~lpdG~ 81 (210)
T 1zbo_A 2 AEIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPAL 81 (210)
T ss_dssp CEEEEEEESSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTTC
T ss_pred cEeeEEecCeeecCCCceeeEECCHHHHHHHHHHHhcCCcEEEEEeCCCcccCcccccCchhceEEEEEEEEEEeCCCce
Confidence 4699999999999999999999999999999999999999999999541 3589999999999999999999
Q ss_pred EEEEEEeeeeEEEEE-EeecCCeEEEEEEEecCCCC--CchhHHHHHHHHHHHHHHHHHHH-----hhcCCCChHHHHhh
Q 020387 144 FFLICKGQERFRVTS-VVRTKPYLVAEVAWLEDRPS--GEEDLDALANDVETYMKDVIRLS-----NRLNGKPEKEVVDL 215 (327)
Q Consensus 144 ~~Ilv~G~~R~kI~~-~~~~~p~l~A~Ve~l~d~~~--~~~E~~aL~~~l~~~~~~l~~l~-----~~l~~~~~~~~~~l 215 (327)
++|+++|.+||+|.+ +.+.+||+.|+|++++|++. .+.+.+++++.+++.|.++.+++ ..+. .+
T Consensus 82 ~~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~~~~l~--------~~ 153 (210)
T 1zbo_A 82 LELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMA--------AP 153 (210)
T ss_dssp EEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBC--------SC
T ss_pred EEEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHHHHhccccccccCC--------Cc
Confidence 999999999999965 67889999999999998642 45678999999999999988764 1121 13
Q ss_pred hhCCCCchHHHHHhhcCCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Q 020387 216 RRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAARLKREKETLRNTLNYLT 267 (327)
Q Consensus 216 ~~~~dp~~Lad~va~~l~l~~eeKqeLLE~~dv~eRL~~ll~lL~~eie~l~ 267 (327)
...+||+.|+|++|++++++.++||+|||+ |+.+||++++++|++++..++
T Consensus 154 ~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~Rl~~l~~~L~~e~~~~~ 204 (210)
T 1zbo_A 154 FRLDDCGWVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVLAADGHALE 204 (210)
T ss_dssp CCTTCHHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHHC------
T ss_pred CCCCCHHHHHHHHHHhCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHhhhhh
Confidence 456799999999999999999999999999 999999999999999877653
No 4
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.93 E-value=2.4e-25 Score=185.13 Aligned_cols=110 Identities=20% Similarity=0.388 Sum_probs=96.3
Q ss_pred CCCCCCCcceeeEeecC-cccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecCC-------CCcceeeeEEEEEEe
Q 020387 65 NSPKSDDVVELPLFPLP-LVLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDAV-------SGTSEVGCVGEIVKH 136 (327)
Q Consensus 65 ~~~~~~~~~~LPllpLr-~VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~~-------~~ly~vGtla~I~~v 136 (327)
-.++.+-+.++|+||++ .|+|||+++||+|++++|++|+++|+++++.|+++++++. +++|+|||+|+|.++
T Consensus 8 ~~~~~~~p~~lPl~PLr~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~~~i~lv~~k~~~~~~p~~~dl~~vGt~a~I~~~ 87 (125)
T 2ane_A 8 MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQM 87 (125)
T ss_dssp -------CEEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEEEEEEEEE
T ss_pred cCcccCCCCeEEEEEeCCeeeCCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCccCCCccchhccEEEEEEEEE
Confidence 34566667789999999 9999999999999999999999999998889999998641 468999999999999
Q ss_pred eEeCCCeEEEEEEeeeeEEEEEEeecCCeEEEEEEEec
Q 020387 137 ECLVDDRFFLICKGQERFRVTSVVRTKPYLVAEVAWLE 174 (327)
Q Consensus 137 ~~l~dG~~~Ilv~G~~R~kI~~~~~~~p~l~A~Ve~l~ 174 (327)
.+++||+++|+++|.+||+|.++.+++||+.|+|++++
T Consensus 88 ~~lpdG~~~ilv~G~~R~rI~~~~~~~~~~~a~V~~l~ 125 (125)
T 2ane_A 88 LKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLE 125 (125)
T ss_dssp EECTTSCEEEEEEEEEEEEEEEEEECSSSEEEEEEEC-
T ss_pred eeCCCCcEEEEEEEEEEEEEEEEEcCCCcEEEEEEECC
Confidence 99999999999999999999999899999999999863
No 5
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=34.22 E-value=66 Score=23.37 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=33.9
Q ss_pred EEEEEEeecC-CeEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 020387 154 FRVTSVVRTK-PYLVAEVAWLEDRPSGEEDLDALANDVETYMKDVIRLS 201 (327)
Q Consensus 154 ~kI~~~~~~~-p~l~A~Ve~l~d~~~~~~E~~aL~~~l~~~~~~l~~l~ 201 (327)
|.|.-..+.+ +++.|++.-++-.-...+..+++.++++.....+++..
T Consensus 4 f~V~~~~Deeagv~vA~s~di~Glvtea~Tleel~~~i~~~i~~lLe~n 52 (73)
T 1wv8_A 4 LKVQALWDGEAGVWVAESDDVPGLATEAATLEELLAKLAVMVPELLEEN 52 (73)
T ss_dssp EEEEEEEETTTTEEEEECSSSTTCCCEESSHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCCEEEEECCCCCceeeecCCHHHHHHHHHHHHHHHHHhc
Confidence 5565555645 99999987666443334557888888988888887754
No 6
>4aqz_A PILQ, type IV pilus biogenesis and competence protein P; transport protein, secretin, type IV PILI, type II secretion; NMR {Neisseria meningitidis}
Probab=22.06 E-value=2.5e+02 Score=22.63 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=54.2
Q ss_pred ccCCCceeeEEeCcHHHHHHHHHHHhcCCcEEEEEecC--C------CCcceeeeEEEEEEeeEeCCCeEEEEEEeeeeE
Q 020387 83 VLFPGAILPLQIFEFRYRIMMHTLLQTDLRFGVIYSDA--V------SGTSEVGCVGEIVKHECLVDDRFFLICKGQERF 154 (327)
Q Consensus 83 VlFPg~~~pL~V~ep~~~~av~~al~~~~~igvv~~~~--~------~~ly~vGtla~I~~v~~l~dG~~~Ilv~G~~R~ 154 (327)
|-|++....+.|.+ .+..+.|-..+- + -|.-++||-++-++..+..+ ..+++++....+
T Consensus 51 v~L~~~~~~vdi~q------------~g~~ivv~~~~t~lp~~L~rrlDV~DFaTPV~~I~~~~~g~-~trl~I~~~G~~ 117 (138)
T 4aqz_A 51 LAALGFAGQPDISQ------------QHDHIIVTLKNHTLPTTLQRSLDVADFKTPVQKVTLKRLNN-DTQLIITTAGNW 117 (138)
T ss_dssp EECTTCCSCCEEEE------------CSSEEEEEETTCCCCTTTCCEECCTTSSSSEEEEEEEECSS-SEEEEEEECSSE
T ss_pred EEcCCCCCCcceEE------------ECCEEEEEEcCCCCCHHHhhheeccccCCCceEEEEEEcCC-CEEEEEEeCCce
Confidence 45677777777775 344455544321 1 25578999888888766554 466777777778
Q ss_pred EEEEEeecCCeEEEEEEEec
Q 020387 155 RVTSVVRTKPYLVAEVAWLE 174 (327)
Q Consensus 155 kI~~~~~~~p~l~A~Ve~l~ 174 (327)
.-.++.+.+..+..+|.+..
T Consensus 118 ey~~~yQ~d~~~~veV~P~~ 137 (138)
T 4aqz_A 118 ELVNKSAAPGYFTFQVLPKK 137 (138)
T ss_dssp EEEEEEEETTEEEEEEEECC
T ss_pred eEEeeEeeCCEEEEEEEeCC
Confidence 88787888889999988753
No 7
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=15.39 E-value=83 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.0
Q ss_pred hHHHHHhhcCCCCHHHHHHhhccCCHHHH
Q 020387 223 PFSFFVGSTFEGAPREQQALLELEDTAAR 251 (327)
Q Consensus 223 ~Lad~va~~l~l~~eeKqeLLE~~dv~eR 251 (327)
.++-.++..+.+++++.|.+|+..+-..+
T Consensus 25 ~m~kaI~avL~Fs~~e~q~il~~e~~r~~ 53 (60)
T 1upt_B 25 TMAKVITTVLKFPDDQTQKILEREDARLM 53 (60)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcccc
Confidence 46778999999999999999987665544
No 8
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=12.25 E-value=2.7e+02 Score=17.47 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=21.8
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 020387 234 GAPREQQALLELEDTAARLKREKETLRNTL 263 (327)
Q Consensus 234 l~~eeKqeLLE~~dv~eRL~~ll~lL~~ei 263 (327)
|+.++|++++...+..+=+.+-.+.+++-+
T Consensus 1 LseEEk~~I~~S~~F~~F~~rsskviERAL 30 (38)
T 3l9k_W 1 LSEEQKQMIILSENFQRFVVRAGRVIERAL 30 (38)
T ss_dssp CCHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 467899999998887776666666665544
No 9
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=9.89 E-value=2.6e+02 Score=26.16 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=42.3
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccccchh-hHhhCCCCc------------------ccccCCCccc
Q 020387 242 LLELEDTAARLKREKETLRNTLNYLTAASAV-KDVFPSSRWC-IFFHYPLGC------------------SENCLLPANV 301 (327)
Q Consensus 242 LLE~~dv~eRL~~ll~lL~~eie~l~l~~~I-k~~~~k~Qre-~~l~~~~~~------------------~~~~~~~~~~ 301 (327)
+....++++=|+.+.+-+++.+..++-+++- .+.+.+..-. =+--...|| +..-| |+-+
T Consensus 353 ~~G~~t~eeal~~~~~~~~~~l~~l~~e~~~C~~~~~~~~~~~~~~~~~~~c~~~~d~~~cw~~~~~g~~~~~~c-p~~~ 431 (475)
T 3n94_A 353 ASGRQTVDEALKDAQTNAAAEFAIFKKEQAMCLEKIQRANELMGFNDSSPGCPGMWDNITCWKPAHVGEMVLVSC-PELF 431 (475)
T ss_dssp HHTSSCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSBCCEECSSCEECCBCTTCEEEEEC-CGGG
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCcccccccCCCCCCCCeEeccc-chhh
Confidence 3344577777777777777766666555444 1111111100 000012345 11122 6555
Q ss_pred cccccc---CCCCcccCCCCCcccCCC
Q 020387 302 FEVSEL---GTPARFSDCGSWPVSYPE 325 (327)
Q Consensus 302 ~~~~~~---~~~~~~~~~~~~~~~~~~ 325 (327)
...+.. |...|.-.++||.++||.
T Consensus 432 ~~~~~~~~~~~~~r~c~~~gw~~~~~~ 458 (475)
T 3n94_A 432 RIFNPDQDMGVVSRNCTEDGWSEPFPH 458 (475)
T ss_dssp GGTCTTGGGCEEEEEEETTEECCCBSC
T ss_pred cCcCcCCCCCceeeecCcccCCCCCCC
Confidence 555543 667774346789999984
No 10
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=9.41 E-value=81 Score=24.52 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=7.9
Q ss_pred CccccCCCCcccccC
Q 020387 49 NYLRCSASSFSEKHH 63 (327)
Q Consensus 49 ~~~~~~~~~~~~~~~ 63 (327)
...-||++|||-.||
T Consensus 89 ~GvfC~~ssf~~~~~ 103 (105)
T 1n1i_A 89 EGVFCSSSSGPHHHH 103 (105)
T ss_dssp GGTEECCCCC-----
T ss_pred ceEEECCCCCCcccc
Confidence 345789999998776
Done!