Query 020388
Match_columns 327
No_of_seqs 211 out of 1982
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0527 LysC Aspartokinases [A 100.0 3.4E-61 7.4E-66 472.4 32.7 287 29-324 104-392 (447)
2 PLN02551 aspartokinase 100.0 1.9E-60 4.2E-65 475.7 31.3 290 16-307 140-510 (521)
3 PRK09034 aspartate kinase; Rev 100.0 4.6E-56 1E-60 440.2 33.0 296 16-323 93-393 (454)
4 PRK06291 aspartate kinase; Pro 100.0 9.8E-56 2.1E-60 439.4 35.0 300 15-324 96-407 (465)
5 PRK09436 thrA bifunctional asp 100.0 2.7E-55 5.8E-60 460.4 34.3 301 14-323 92-404 (819)
6 PRK09181 aspartate kinase; Val 100.0 1.8E-55 4E-60 435.9 31.0 282 16-311 113-471 (475)
7 PRK09084 aspartate kinase III; 100.0 7.7E-55 1.7E-59 430.7 33.8 284 14-309 84-373 (448)
8 PRK09466 metL bifunctional asp 100.0 8.1E-54 1.8E-58 446.7 30.6 280 14-303 100-379 (810)
9 PRK05925 aspartate kinase; Pro 100.0 2.2E-53 4.8E-58 417.8 30.7 284 19-307 84-435 (440)
10 TIGR00656 asp_kin_monofn aspar 100.0 7.6E-52 1.6E-56 405.1 33.7 265 30-305 60-324 (401)
11 KOG0456 Aspartate kinase [Amin 100.0 2.2E-53 4.9E-58 396.0 20.4 295 14-310 165-540 (559)
12 PRK08841 aspartate kinase; Val 100.0 8.8E-52 1.9E-56 401.9 28.8 268 31-307 61-379 (392)
13 TIGR00657 asp_kinases aspartat 100.0 1.5E-50 3.2E-55 400.4 31.3 262 32-302 101-362 (441)
14 PRK08961 bifunctional aspartat 100.0 5.8E-48 1.3E-52 408.3 30.3 298 15-324 93-407 (861)
15 PRK06635 aspartate kinase; Rev 100.0 4.1E-47 8.9E-52 372.0 31.3 260 32-302 62-324 (404)
16 PRK07431 aspartate kinase; Pro 100.0 1.3E-46 2.9E-51 384.1 30.5 282 29-316 59-421 (587)
17 PRK08210 aspartate kinase I; R 100.0 3.6E-46 7.8E-51 365.3 30.5 263 31-302 66-328 (403)
18 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 1.5E-46 3.2E-51 350.8 22.2 196 16-215 93-288 (288)
19 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 7.9E-46 1.7E-50 346.5 22.4 200 15-215 87-292 (292)
20 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 7.7E-46 1.7E-50 347.5 21.7 200 14-215 90-294 (294)
21 cd04243 AAK_AK-HSDH-like AAK_A 100.0 1.7E-45 3.7E-50 345.0 21.9 200 14-215 89-293 (293)
22 PRK08373 aspartate kinase; Val 100.0 1.1E-44 2.4E-49 344.6 26.9 241 31-305 97-340 (341)
23 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 3.9E-45 8.5E-50 343.3 22.2 201 15-216 99-305 (306)
24 cd04244 AAK_AK-LysC-like AAK_A 100.0 4.7E-45 1E-49 343.1 21.5 200 14-215 91-298 (298)
25 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 2.4E-44 5.2E-49 337.4 22.1 199 15-215 85-295 (295)
26 cd04248 AAK_AK-Ectoine AAK_AK- 100.0 3.4E-42 7.3E-47 320.1 20.9 189 17-215 108-304 (304)
27 TIGR02078 AspKin_pair Pyrococc 100.0 2.9E-41 6.2E-46 319.6 24.1 231 31-304 92-326 (327)
28 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 2.8E-37 6E-42 282.5 21.2 181 31-215 59-239 (239)
29 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 5.6E-37 1.2E-41 281.3 21.3 182 30-215 63-244 (244)
30 cd04234 AAK_AK AAK_AK: Amino A 100.0 2.6E-37 5.6E-42 280.6 18.6 198 14-215 15-227 (227)
31 cd04246 AAK_AK-DapG-like AAK_A 100.0 1.4E-36 3.1E-41 277.7 21.4 180 32-215 60-239 (239)
32 cd02115 AAK Amino Acid Kinases 100.0 2.9E-29 6.4E-34 229.7 20.1 180 31-214 61-248 (248)
33 PRK14558 pyrH uridylate kinase 99.9 2.5E-25 5.3E-30 202.6 17.6 182 11-216 20-230 (231)
34 cd04242 AAK_G5K_ProB AAK_G5K_P 99.9 1.3E-24 2.7E-29 200.3 17.7 166 34-214 65-250 (251)
35 cd04239 AAK_UMPK-like AAK_UMPK 99.9 3.4E-24 7.4E-29 194.8 17.0 152 33-208 62-213 (229)
36 PF00696 AA_kinase: Amino acid 99.9 2.1E-25 4.6E-30 203.4 8.2 112 90-203 125-242 (242)
37 PRK00358 pyrH uridylate kinase 99.9 5.4E-24 1.2E-28 193.7 17.1 150 35-208 66-215 (231)
38 PRK12314 gamma-glutamyl kinase 99.9 7.5E-24 1.6E-28 196.6 17.9 169 33-216 74-264 (266)
39 PRK14557 pyrH uridylate kinase 99.9 4.4E-23 9.5E-28 189.2 16.5 162 32-217 67-239 (247)
40 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.9 4.4E-23 9.5E-28 187.8 15.9 155 36-214 67-230 (231)
41 PRK13402 gamma-glutamyl kinase 99.9 1.1E-22 2.3E-27 196.2 17.5 194 10-218 23-259 (368)
42 TIGR02075 pyrH_bact uridylate 99.9 1.8E-22 3.9E-27 184.0 15.5 155 36-214 68-232 (233)
43 COG0528 PyrH Uridylate kinase 99.9 1.6E-21 3.6E-26 173.8 18.9 181 11-215 25-237 (238)
44 PRK14556 pyrH uridylate kinase 99.9 1.7E-21 3.6E-26 177.7 15.6 181 11-215 35-247 (249)
45 TIGR01027 proB glutamate 5-kin 99.9 5.9E-21 1.3E-25 184.4 17.2 171 34-218 66-255 (363)
46 PRK05429 gamma-glutamyl kinase 99.9 6.2E-21 1.3E-25 184.9 17.2 170 34-218 74-263 (372)
47 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.8 2.5E-20 5.4E-25 168.6 16.0 139 33-207 60-204 (221)
48 cd04241 AAK_FomA-like AAK_FomA 99.8 4.6E-20 1E-24 169.9 16.1 145 49-207 83-236 (252)
49 TIGR02076 pyrH_arch uridylate 99.8 8.2E-20 1.8E-24 165.2 15.3 141 33-208 59-205 (221)
50 COG0263 ProB Glutamate 5-kinas 99.8 2.5E-19 5.3E-24 167.9 18.9 194 10-218 24-261 (369)
51 PRK14058 acetylglutamate/acety 99.8 1E-19 2.2E-24 169.3 15.6 169 33-216 68-267 (268)
52 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.8 2.2E-19 4.8E-24 167.9 14.4 151 43-208 93-263 (279)
53 TIGR00761 argB acetylglutamate 99.8 4E-19 8.7E-24 161.7 12.1 141 43-199 75-228 (231)
54 PRK00942 acetylglutamate kinas 99.8 1.3E-18 2.9E-23 163.0 14.8 160 38-216 98-282 (283)
55 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.8 9.7E-19 2.1E-23 161.2 13.5 156 34-207 67-236 (252)
56 PTZ00489 glutamate 5-kinase; P 99.8 5.5E-18 1.2E-22 156.8 17.9 170 34-216 70-259 (264)
57 cd04238 AAK_NAGK-like AAK_NAGK 99.8 2.7E-18 5.9E-23 158.6 13.3 147 43-207 77-239 (256)
58 cd04256 AAK_P5CS_ProBA AAK_P5C 99.8 7.6E-18 1.6E-22 157.7 16.3 170 34-214 92-283 (284)
59 PLN02512 acetylglutamate kinas 99.8 1.5E-17 3.2E-22 157.6 15.7 155 48-215 129-308 (309)
60 CHL00202 argB acetylglutamate 99.8 1.6E-17 3.5E-22 155.6 15.2 159 42-215 101-283 (284)
61 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.8 1.1E-17 2.3E-22 154.8 13.4 158 33-208 64-244 (257)
62 PLN02418 delta-1-pyrroline-5-c 99.8 1.4E-17 3.1E-22 173.4 15.9 169 37-217 94-284 (718)
63 cd04255 AAK_UMPK-MosAB AAK_UMP 99.7 1.8E-16 3.9E-21 146.8 17.3 186 13-214 47-261 (262)
64 COG1608 Predicted archaeal kin 99.7 1.3E-15 2.7E-20 136.2 12.5 154 48-215 83-251 (252)
65 TIGR01092 P5CS delta l-pyrroli 99.6 2.4E-15 5.3E-20 156.9 16.2 168 34-217 83-276 (715)
66 COG0548 ArgB Acetylglutamate k 99.6 3.8E-15 8.2E-20 136.6 15.2 150 42-207 80-246 (265)
67 cd04235 AAK_CK AAK_CK: Carbama 99.6 1.3E-13 2.8E-18 129.8 16.4 119 90-214 172-307 (308)
68 PRK12353 putative amino acid k 99.6 1.1E-13 2.5E-18 131.3 16.1 121 90-215 176-313 (314)
69 cd04236 AAK_NAGS-Urea AAK_NAGS 99.5 9E-14 2E-18 129.0 13.6 140 48-203 100-253 (271)
70 cd04252 AAK_NAGK-fArgBP AAK_NA 99.5 3E-13 6.6E-18 124.5 15.6 145 41-203 72-230 (248)
71 cd04915 ACT_AK-Ectoine_2 ACT d 99.5 6.5E-14 1.4E-18 102.8 8.6 66 240-306 1-66 (66)
72 KOG1154 Gamma-glutamyl kinase 99.5 1.6E-13 3.5E-18 121.9 11.0 175 23-211 76-261 (285)
73 TIGR00746 arcC carbamate kinas 99.5 9.7E-13 2.1E-17 124.3 16.5 200 11-215 23-309 (310)
74 cd04918 ACT_AK1-AT_2 ACT domai 99.5 2.3E-13 5.1E-18 99.5 8.3 63 242-305 2-64 (65)
75 cd04919 ACT_AK-Hom3_2 ACT doma 99.5 3.3E-13 7.2E-18 98.4 8.6 66 241-306 1-66 (66)
76 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.5 1.2E-12 2.5E-17 122.6 14.1 147 42-207 94-263 (280)
77 PRK05279 N-acetylglutamate syn 99.4 1.3E-12 2.8E-17 129.8 13.8 157 42-217 101-292 (441)
78 PRK12686 carbamate kinase; Rev 99.4 1.4E-12 3E-17 122.9 12.8 121 90-215 174-311 (312)
79 cd04922 ACT_AKi-HSDH-ThrA_2 AC 99.4 8.1E-13 1.8E-17 96.0 8.6 65 241-305 1-65 (66)
80 cd04921 ACT_AKi-HSDH-ThrA-like 99.4 1.6E-12 3.5E-17 98.4 10.2 79 241-319 1-79 (80)
81 cd04937 ACT_AKi-DapG-BS_2 ACT 99.4 1.5E-12 3.2E-17 94.9 8.2 63 241-305 1-63 (64)
82 TIGR01890 N-Ac-Glu-synth amino 99.4 8E-12 1.7E-16 123.7 14.7 157 42-217 93-280 (429)
83 cd04917 ACT_AKiii-LysC-EC_2 AC 99.4 2.6E-12 5.5E-17 93.5 8.1 64 241-306 1-64 (64)
84 cd04920 ACT_AKiii-DAPDC_2 ACT 99.4 2.1E-12 4.6E-17 93.9 7.4 63 242-306 1-63 (63)
85 PRK12454 carbamate kinase-like 99.4 1.8E-11 3.8E-16 115.4 15.6 121 90-215 176-312 (313)
86 cd04916 ACT_AKiii-YclM-BS_2 AC 99.4 4.5E-12 9.8E-17 92.1 8.6 65 241-305 1-65 (66)
87 PRK12354 carbamate kinase; Rev 99.3 3.4E-11 7.4E-16 113.1 15.7 122 90-217 166-301 (307)
88 cd04924 ACT_AK-Arch_2 ACT doma 99.3 1.1E-11 2.3E-16 90.0 8.6 65 241-305 1-65 (66)
89 PRK06291 aspartate kinase; Pro 99.3 1.3E-11 2.9E-16 123.3 11.1 123 183-306 336-463 (465)
90 cd04240 AAK_UC AAK_UC: Unchara 99.3 9.7E-12 2.1E-16 111.1 8.8 101 90-207 82-186 (203)
91 COG0527 LysC Aspartokinases [A 99.3 3.9E-11 8.6E-16 118.7 12.4 121 183-306 322-446 (447)
92 PRK09411 carbamate kinase; Rev 99.3 1.3E-10 2.7E-15 108.6 14.4 160 42-215 124-296 (297)
93 PRK09436 thrA bifunctional asp 99.2 4.9E-11 1.1E-15 126.4 13.0 134 184-322 331-472 (819)
94 PF13840 ACT_7: ACT domain ; P 99.2 7E-11 1.5E-15 86.4 7.2 63 237-302 2-65 (65)
95 PRK12352 putative carbamate ki 99.2 1.9E-10 4.2E-15 109.0 11.4 117 90-215 177-314 (316)
96 PRK09034 aspartate kinase; Rev 99.2 1.3E-10 2.8E-15 115.8 9.8 119 186-307 326-451 (454)
97 PRK09084 aspartate kinase III; 99.1 5.5E-10 1.2E-14 111.1 12.7 120 183-306 321-447 (448)
98 TIGR00656 asp_kin_monofn aspar 99.1 6E-10 1.3E-14 109.4 10.4 121 183-306 275-400 (401)
99 PRK04531 acetylglutamate kinas 99.1 3.6E-09 7.9E-14 103.5 14.8 114 92-217 122-250 (398)
100 cd04936 ACT_AKii-LysC-BS-like_ 99.1 9.2E-10 2E-14 78.8 8.0 62 242-305 1-62 (63)
101 cd04892 ACT_AK-like_2 ACT doma 99.0 1E-09 2.3E-14 78.3 8.2 64 242-305 1-64 (65)
102 cd04923 ACT_AK-LysC-DapG-like_ 99.0 1.3E-09 2.8E-14 78.0 8.1 62 242-305 1-62 (63)
103 TIGR00657 asp_kinases aspartat 99.0 2.8E-09 6E-14 106.0 11.2 120 184-306 317-441 (441)
104 PLN02825 amino-acid N-acetyltr 99.0 4.8E-09 1E-13 105.4 11.6 108 54-178 112-235 (515)
105 PRK09466 metL bifunctional asp 99.0 5.7E-09 1.2E-13 110.4 12.7 131 184-322 333-465 (810)
106 PRK07431 aspartate kinase; Pro 98.9 3.1E-09 6.7E-14 109.3 9.3 72 233-306 511-582 (587)
107 PRK08961 bifunctional aspartat 98.9 5.6E-09 1.2E-13 111.7 11.2 122 182-307 336-462 (861)
108 PRK08210 aspartate kinase I; R 98.9 6.7E-09 1.4E-13 102.1 10.4 137 164-305 261-401 (403)
109 PRK06635 aspartate kinase; Rev 98.9 1.3E-08 2.8E-13 100.1 11.0 120 184-305 276-402 (404)
110 cd04868 ACT_AK-like ACT domain 98.9 1E-08 2.2E-13 71.7 7.2 60 242-301 1-60 (60)
111 cd04912 ACT_AKiii-LysC-EC-like 98.7 9.6E-08 2.1E-12 71.7 9.8 64 241-306 1-67 (75)
112 cd04933 ACT_AK1-AT_1 ACT domai 98.7 7E-08 1.5E-12 73.1 8.8 62 241-304 1-68 (78)
113 COG2054 Uncharacterized archae 98.7 2.8E-08 6.1E-13 85.6 5.6 83 126-216 118-210 (212)
114 cd04932 ACT_AKiii-LysC-EC_1 AC 98.7 1.5E-07 3.3E-12 70.7 8.3 62 241-304 1-65 (75)
115 cd04934 ACT_AK-Hom3_1 CT domai 98.6 2.7E-07 5.8E-12 69.0 8.0 63 241-305 1-64 (73)
116 cd04890 ACT_AK-like_1 ACT doma 98.6 3.7E-07 8.1E-12 65.5 7.8 60 243-304 2-61 (62)
117 cd04935 ACT_AKiii-DAPDC_1 ACT 98.6 4.7E-07 1E-11 68.0 8.6 63 241-305 1-66 (75)
118 cd04913 ACT_AKii-LysC-BS-like_ 98.6 4.6E-07 1E-11 66.6 8.5 62 241-304 1-65 (75)
119 cd04891 ACT_AK-LysC-DapG-like_ 98.5 4.2E-07 9.1E-12 63.9 7.5 57 242-300 1-60 (61)
120 COG0549 ArcC Carbamate kinase 98.4 3.3E-06 7.2E-11 77.9 11.5 122 90-215 175-311 (312)
121 cd04914 ACT_AKi-DapG-BS_1 ACT 98.3 4.7E-06 1E-10 61.1 8.0 57 242-302 2-58 (67)
122 PLN02551 aspartokinase 98.2 6.6E-06 1.4E-10 83.4 10.3 64 230-295 355-418 (521)
123 cd04910 ACT_AK-Ectoine_1 ACT d 97.6 0.00027 5.9E-09 52.4 7.1 65 242-306 2-66 (71)
124 PRK05925 aspartate kinase; Pro 97.5 0.00049 1.1E-08 68.6 9.8 70 230-303 289-359 (440)
125 cd04911 ACT_AKiii-YclM-BS_1 AC 97.0 0.0021 4.6E-08 48.3 5.9 70 242-313 2-72 (76)
126 PF01842 ACT: ACT domain; Int 97.0 0.0015 3.3E-08 46.5 5.0 53 251-303 7-64 (66)
127 PRK09181 aspartate kinase; Val 96.9 0.0025 5.4E-08 64.1 7.8 90 230-324 318-411 (475)
128 COG3830 ACT domain-containing 96.9 0.0037 7.9E-08 48.2 6.3 66 240-308 2-69 (90)
129 COG3603 Uncharacterized conser 96.2 0.032 6.8E-07 45.1 7.8 71 230-303 52-122 (128)
130 cd04888 ACT_PheB-BS C-terminal 96.1 0.033 7.1E-07 40.9 7.3 53 252-304 8-63 (76)
131 KOG2436 Acetylglutamate kinase 96.1 0.013 2.7E-07 58.3 6.2 119 41-177 170-302 (520)
132 PRK08841 aspartate kinase; Val 95.9 0.025 5.3E-07 55.7 7.8 58 230-296 247-304 (392)
133 PRK04435 hypothetical protein; 95.8 0.12 2.7E-06 43.8 10.2 77 238-323 66-146 (147)
134 cd04908 ACT_Bt0572_1 N-termina 95.3 0.11 2.3E-06 37.4 7.2 53 251-303 8-60 (66)
135 PF13740 ACT_6: ACT domain; PD 94.6 0.13 2.9E-06 38.2 6.4 45 242-289 3-49 (76)
136 cd02116 ACT ACT domains are co 94.6 0.14 3E-06 33.5 5.8 48 253-300 7-59 (60)
137 CHL00100 ilvH acetohydroxyacid 94.4 0.22 4.8E-06 43.4 8.0 68 243-314 4-77 (174)
138 cd04870 ACT_PSP_1 CT domains f 94.3 0.24 5.1E-06 36.6 7.0 57 243-302 1-62 (75)
139 PRK13562 acetolactate synthase 93.8 0.26 5.7E-06 37.7 6.4 52 251-302 9-67 (84)
140 KOG0456 Aspartate kinase [Amin 93.3 0.16 3.4E-06 49.4 5.6 75 228-304 380-457 (559)
141 cd04875 ACT_F4HF-DF N-terminal 92.7 0.46 9.9E-06 34.9 6.2 33 243-278 1-33 (74)
142 PRK08178 acetolactate synthase 92.7 0.48 1E-05 37.2 6.5 45 242-289 9-57 (96)
143 PRK00194 hypothetical protein; 92.2 0.35 7.5E-06 36.9 5.3 36 241-279 3-38 (90)
144 COG4747 ACT domain-containing 92.1 0.39 8.4E-06 39.0 5.4 107 187-303 19-129 (142)
145 cd04882 ACT_Bt0572_2 C-termina 92.1 0.45 9.8E-06 33.4 5.4 52 251-302 6-59 (65)
146 cd04872 ACT_1ZPV ACT domain pr 91.9 0.88 1.9E-05 34.6 7.2 58 242-302 2-65 (88)
147 cd04893 ACT_GcvR_1 ACT domains 91.8 0.77 1.7E-05 34.2 6.6 35 242-279 2-36 (77)
148 cd04869 ACT_GcvR_2 ACT domains 91.8 1.1 2.4E-05 33.1 7.5 56 244-302 2-68 (81)
149 PRK11589 gcvR glycine cleavage 91.8 0.45 9.8E-06 42.1 6.1 49 239-290 6-56 (190)
150 cd04889 ACT_PDH-BS-like C-term 91.6 0.79 1.7E-05 31.5 6.1 50 251-300 5-55 (56)
151 cd04883 ACT_AcuB C-terminal AC 91.2 1.9 4.1E-05 30.9 8.1 53 251-303 8-64 (72)
152 PRK06737 acetolactate synthase 91.0 0.81 1.7E-05 34.4 5.9 51 252-302 10-66 (76)
153 PRK11152 ilvM acetolactate syn 90.6 1.1 2.4E-05 33.6 6.3 40 251-290 10-53 (76)
154 cd04886 ACT_ThrD-II-like C-ter 90.4 1.4 3E-05 31.1 6.7 28 251-278 5-32 (73)
155 cd04909 ACT_PDH-BS C-terminal 90.4 1.2 2.6E-05 31.9 6.3 52 251-302 8-64 (69)
156 cd04903 ACT_LSD C-terminal ACT 87.5 2.2 4.8E-05 29.9 6.0 51 252-302 7-61 (71)
157 PRK11895 ilvH acetolactate syn 87.2 2.2 4.8E-05 36.7 6.7 53 251-303 9-67 (161)
158 PRK06027 purU formyltetrahydro 86.8 3.9 8.4E-05 38.5 8.7 62 241-305 6-78 (286)
159 cd04880 ACT_AAAH-PDT-like ACT 86.4 2.5 5.3E-05 30.9 5.8 51 252-302 7-66 (75)
160 TIGR00655 PurU formyltetrahydr 86.1 2 4.4E-05 40.3 6.4 34 243-279 2-35 (280)
161 PRK13010 purU formyltetrahydro 86.0 3.5 7.7E-05 38.9 8.0 35 241-278 9-43 (289)
162 PRK13011 formyltetrahydrofolat 85.1 5.2 0.00011 37.7 8.6 36 240-278 6-41 (286)
163 cd04927 ACT_ACR-like_2 Second 84.9 7 0.00015 28.9 7.7 66 243-311 2-74 (76)
164 TIGR00119 acolac_sm acetolacta 84.7 3.4 7.5E-05 35.4 6.6 52 251-304 8-63 (157)
165 PF13291 ACT_4: ACT domain; PD 83.7 6.2 0.00014 29.1 7.0 58 242-302 7-68 (80)
166 cd04874 ACT_Af1403 N-terminal 83.0 6.2 0.00014 27.6 6.6 41 251-291 7-50 (72)
167 cd04925 ACT_ACR_2 ACT domain-c 83.0 11 0.00024 27.6 8.0 45 243-290 2-48 (74)
168 cd04879 ACT_3PGDH-like ACT_3PG 82.4 5.3 0.00011 27.8 6.0 51 251-301 6-60 (71)
169 COG1058 CinA Predicted nucleot 81.8 8.4 0.00018 35.7 8.4 69 47-141 22-90 (255)
170 cd04877 ACT_TyrR N-terminal AC 81.4 8.3 0.00018 28.1 6.8 54 244-301 3-56 (74)
171 cd04881 ACT_HSDH-Hom ACT_HSDH_ 80.8 10 0.00023 26.9 7.2 51 252-302 8-65 (79)
172 cd04900 ACT_UUR-like_1 ACT dom 80.7 13 0.00027 27.1 7.5 31 243-276 3-33 (73)
173 PRK11589 gcvR glycine cleavage 80.7 5.6 0.00012 35.2 6.6 74 242-319 96-181 (190)
174 cd04878 ACT_AHAS N-terminal AC 80.6 6.5 0.00014 27.4 5.9 40 251-290 7-50 (72)
175 cd04871 ACT_PSP_2 ACT domains 80.5 1.8 3.9E-05 32.9 3.0 34 243-278 1-34 (84)
176 PF13710 ACT_5: ACT domain; PD 80.2 3.5 7.6E-05 29.5 4.3 50 253-302 1-56 (63)
177 cd04887 ACT_MalLac-Enz ACT_Mal 79.8 10 0.00022 27.2 6.9 52 251-302 6-60 (74)
178 cd04929 ACT_TPH ACT domain of 79.5 8.9 0.00019 28.4 6.4 52 252-303 8-66 (74)
179 PF11760 CbiG_N: Cobalamin syn 79.4 4.6 9.9E-05 30.9 4.8 50 90-143 26-79 (84)
180 cd04905 ACT_CM-PDT C-terminal 78.7 10 0.00022 28.0 6.6 52 251-302 8-68 (80)
181 cd04904 ACT_AAAH ACT domain of 78.4 9.4 0.0002 28.0 6.2 51 252-302 8-65 (74)
182 cd04901 ACT_3PGDH C-terminal A 77.3 2.4 5.1E-05 30.1 2.7 52 251-302 6-59 (69)
183 PRK08577 hypothetical protein; 77.2 15 0.00032 30.3 7.8 35 240-277 55-89 (136)
184 COG0440 IlvH Acetolactate synt 77.1 5.8 0.00013 34.2 5.3 52 252-303 12-69 (163)
185 cd04873 ACT_UUR-ACR-like ACT d 75.6 20 0.00044 24.9 7.3 46 243-291 2-49 (70)
186 cd04884 ACT_CBS C-terminal ACT 75.1 15 0.00033 26.4 6.6 29 251-279 6-34 (72)
187 cd04895 ACT_ACR_1 ACT domain-c 73.7 31 0.00067 25.5 7.8 60 242-304 2-68 (72)
188 cd04931 ACT_PAH ACT domain of 73.7 14 0.0003 28.5 6.3 52 252-303 22-81 (90)
189 cd04902 ACT_3PGDH-xct C-termin 72.4 8.8 0.00019 27.3 4.7 26 251-276 6-31 (73)
190 PRK08198 threonine dehydratase 71.1 21 0.00046 35.0 8.5 54 238-294 324-384 (404)
191 cd04896 ACT_ACR-like_3 ACT dom 70.5 42 0.00091 25.0 8.4 33 243-278 2-34 (75)
192 COG4492 PheB ACT domain-contai 69.9 26 0.00056 29.2 7.2 52 251-302 79-137 (150)
193 PRK03670 competence damage-ind 69.2 22 0.00048 32.8 7.6 70 46-140 20-89 (252)
194 cd04876 ACT_RelA-SpoT ACT dom 69.1 26 0.00056 23.3 6.5 38 252-289 6-46 (71)
195 COG4747 ACT domain-containing 67.9 38 0.00083 27.7 7.7 58 243-305 5-64 (142)
196 cd00885 cinA Competence-damage 67.6 34 0.00074 29.5 8.1 69 46-140 19-87 (170)
197 cd04899 ACT_ACR-UUR-like_2 C-t 66.8 26 0.00057 24.6 6.2 34 243-279 2-35 (70)
198 PRK03673 hypothetical protein; 66.7 28 0.0006 34.4 8.2 69 46-140 21-89 (396)
199 cd05014 SIS_Kpsf KpsF-like pro 66.1 38 0.00081 26.9 7.7 80 116-204 1-82 (128)
200 cd04906 ACT_ThrD-I_1 First of 65.9 26 0.00056 26.3 6.2 51 250-302 7-64 (85)
201 cd04926 ACT_ACR_4 C-terminal 64.6 31 0.00067 25.0 6.3 40 251-290 8-49 (72)
202 PF00994 MoCF_biosynth: Probab 61.1 41 0.00089 27.7 7.2 68 46-139 17-84 (144)
203 cd04897 ACT_ACR_3 ACT domain-c 60.1 69 0.0015 23.8 8.4 48 242-292 2-51 (75)
204 cd04885 ACT_ThrD-I Tandem C-te 59.4 46 0.00099 23.7 6.3 50 251-301 5-60 (68)
205 cd04930 ACT_TH ACT domain of t 59.3 39 0.00084 27.3 6.4 26 252-277 49-74 (115)
206 PRK01215 competence damage-ind 58.7 44 0.00096 31.0 7.6 69 46-140 23-91 (264)
207 PF09413 DUF2007: Domain of un 57.8 29 0.00062 24.6 5.0 48 255-302 9-64 (67)
208 TIGR00177 molyb_syn molybdenum 57.5 67 0.0014 26.7 7.9 65 47-137 28-92 (144)
209 PRK00549 competence damage-ind 53.9 53 0.0012 32.6 7.7 70 46-141 20-89 (414)
210 PF12122 DUF3582: Protein of u 53.9 40 0.00086 26.7 5.5 58 253-313 8-66 (101)
211 cd04819 PA_2 PA_2: Protease-as 53.0 1.2E+02 0.0026 24.5 8.6 42 112-153 41-85 (127)
212 COG2716 GcvR Glycine cleavage 52.1 42 0.00092 29.2 5.8 85 239-326 3-103 (176)
213 cd04928 ACT_TyrKc Uncharacteri 51.0 95 0.0021 22.6 7.1 49 244-295 4-55 (68)
214 COG0011 Uncharacterized conser 50.3 1E+02 0.0023 24.3 7.3 61 242-307 5-67 (100)
215 smart00852 MoCF_biosynth Proba 50.2 63 0.0014 26.3 6.5 69 45-139 17-85 (135)
216 TIGR02667 moaB_proteo molybden 50.0 75 0.0016 27.1 7.1 70 45-138 21-90 (163)
217 TIGR01127 ilvA_1Cterm threonin 49.5 72 0.0016 30.9 7.8 52 238-292 302-360 (380)
218 PRK05788 cobalamin biosynthesi 47.8 24 0.00052 33.7 4.0 156 111-304 83-250 (315)
219 TIGR00200 cinA_nterm competenc 45.5 1E+02 0.0022 30.7 8.1 68 47-140 21-88 (413)
220 cd00758 MoCF_BD MoCF_BD: molyb 45.5 1.4E+02 0.003 24.2 7.9 66 46-137 19-84 (133)
221 COG2150 Predicted regulator of 45.3 1.1E+02 0.0025 26.3 7.3 63 239-302 91-157 (167)
222 COG3602 Uncharacterized protei 44.4 32 0.00069 27.9 3.6 64 236-302 65-128 (134)
223 PRK06382 threonine dehydratase 44.1 1E+02 0.0022 30.4 8.0 62 238-302 327-398 (406)
224 cd00886 MogA_MoaB MogA_MoaB fa 43.1 1.3E+02 0.0029 25.1 7.5 68 47-138 21-88 (152)
225 PRK06349 homoserine dehydrogen 42.9 74 0.0016 31.6 6.8 43 251-293 355-400 (426)
226 PRK07334 threonine dehydratase 40.7 1.2E+02 0.0027 29.7 8.0 58 242-302 327-394 (403)
227 smart00460 TGc Transglutaminas 37.2 40 0.00088 23.4 3.0 24 42-67 9-32 (68)
228 COG0303 MoeA Molybdopterin bio 37.1 1.3E+02 0.0028 29.9 7.4 71 48-146 205-275 (404)
229 PF02254 TrkA_N: TrkA-N domain 37.0 1E+02 0.0022 23.8 5.6 69 39-147 3-71 (116)
230 cd04817 PA_VapT_like PA_VapT_l 35.9 2.2E+02 0.0048 23.7 7.6 65 111-177 52-128 (139)
231 COG1778 Low specificity phosph 35.5 37 0.00081 29.2 2.9 52 143-206 10-61 (170)
232 PF09186 DUF1949: Domain of un 35.0 1.4E+02 0.003 19.9 6.7 45 258-303 8-52 (56)
233 PRK13581 D-3-phosphoglycerate 34.7 2.4E+02 0.0051 28.9 9.1 51 252-302 460-514 (526)
234 PRK03381 PII uridylyl-transfer 33.2 1.9E+02 0.0042 31.2 8.5 63 239-304 597-666 (774)
235 TIGR00719 sda_beta L-serine de 32.9 97 0.0021 27.6 5.3 46 252-297 156-205 (208)
236 PF01841 Transglut_core: Trans 32.7 40 0.00086 26.0 2.5 28 41-70 53-80 (113)
237 PRK05772 translation initiatio 32.3 4.6E+02 0.01 25.6 10.2 55 111-173 256-311 (363)
238 cd02129 PA_hSPPL_like PA_hSPPL 32.0 2.7E+02 0.0058 22.7 7.3 63 115-177 44-109 (120)
239 TIGR00393 kpsF KpsF/GutQ famil 31.5 1.7E+02 0.0037 26.4 6.9 80 116-204 1-82 (268)
240 PF06153 DUF970: Protein of un 29.4 2.5E+02 0.0055 22.5 6.6 50 257-306 12-66 (109)
241 COG0499 SAM1 S-adenosylhomocys 29.2 92 0.002 30.6 4.7 34 100-149 208-241 (420)
242 PRK03659 glutathione-regulated 29.1 2.4E+02 0.0052 29.4 8.2 114 39-192 405-523 (601)
243 PRK06545 prephenate dehydrogen 28.5 1.1E+02 0.0024 29.5 5.3 61 240-303 289-354 (359)
244 TIGR00106 uncharacterized prot 28.2 2.9E+02 0.0062 21.5 7.2 62 253-319 16-77 (97)
245 KOG2446 Glucose-6-phosphate is 28.2 1.2E+02 0.0027 30.4 5.4 37 118-154 153-194 (546)
246 PF13721 SecD-TM1: SecD export 28.1 2.2E+02 0.0048 22.3 6.1 45 259-305 49-94 (101)
247 cd02133 PA_C5a_like PA_C5a_lik 27.8 3.1E+02 0.0068 22.4 7.3 61 116-177 48-109 (143)
248 PF13511 DUF4124: Domain of un 27.3 54 0.0012 22.7 2.2 28 131-158 4-33 (60)
249 PF11823 DUF3343: Protein of u 27.2 1.9E+02 0.0041 20.9 5.2 48 256-303 12-62 (73)
250 COG0329 DapA Dihydrodipicolina 27.1 2.8E+02 0.0061 26.1 7.7 81 48-146 27-107 (299)
251 PF01514 YscJ_FliF: Secretory 26.5 2.2E+02 0.0047 25.3 6.4 45 256-303 38-82 (206)
252 PRK11790 D-3-phosphoglycerate 26.3 1.1E+02 0.0025 30.2 5.0 25 251-275 345-369 (409)
253 PF08544 GHMP_kinases_C: GHMP 24.5 2.7E+02 0.0059 20.0 5.9 48 257-304 35-83 (85)
254 COG0462 PrsA Phosphoribosylpyr 24.3 2.7E+02 0.0059 26.7 6.9 97 35-148 97-196 (314)
255 PRK14690 molybdopterin biosynt 24.2 3.3E+02 0.0071 27.1 7.8 70 47-145 221-290 (419)
256 cd00952 CHBPH_aldolase Trans-o 24.2 1.6E+02 0.0035 27.8 5.5 79 49-146 32-111 (309)
257 PRK05092 PII uridylyl-transfer 24.2 3.6E+02 0.0079 29.7 8.9 49 239-290 841-891 (931)
258 cd01452 VWA_26S_proteasome_sub 24.0 1.6E+02 0.0035 25.9 5.0 36 244-279 111-146 (187)
259 TIGR02726 phenyl_P_delta pheny 23.9 56 0.0012 28.1 2.1 49 143-205 9-59 (169)
260 PF11713 Peptidase_C80: Peptid 23.9 1.2E+02 0.0026 25.8 4.1 35 243-277 105-142 (157)
261 PRK09417 mogA molybdenum cofac 23.5 4.9E+02 0.011 22.9 8.0 71 46-138 23-93 (193)
262 PRK10872 relA (p)ppGpp synthet 23.1 3.4E+02 0.0075 29.2 8.1 69 231-302 651-728 (743)
263 PF02225 PA: PA domain; Inter 22.9 3.2E+02 0.007 20.3 7.0 50 128-177 47-98 (101)
264 PRK10680 molybdopterin biosynt 22.9 3.7E+02 0.008 26.6 7.9 71 47-146 205-275 (411)
265 cd00887 MoeA MoeA family. Memb 22.9 3.6E+02 0.0079 26.4 7.8 68 47-141 196-263 (394)
266 PRK10629 EnvZ/OmpR regulon mod 22.8 1.8E+02 0.004 23.9 4.8 47 257-305 51-98 (127)
267 TIGR01327 PGDH D-3-phosphoglyc 22.7 3.9E+02 0.0085 27.3 8.3 51 252-302 459-513 (525)
268 TIGR00691 spoT_relA (p)ppGpp s 22.7 3.2E+02 0.0069 29.1 7.8 69 231-302 595-671 (683)
269 PRK11899 prephenate dehydratas 22.6 2.1E+02 0.0046 26.8 5.8 51 252-302 202-261 (279)
270 PF13399 LytR_C: LytR cell env 22.4 2.5E+02 0.0055 20.8 5.3 52 253-304 13-64 (90)
271 PRK08526 threonine dehydratase 21.8 3.8E+02 0.0082 26.4 7.7 54 238-294 323-383 (403)
272 PF09194 Endonuc-BsobI: Restri 21.7 2.4E+02 0.0051 26.5 5.7 56 5-68 104-159 (316)
273 PRK03059 PII uridylyl-transfer 21.0 4E+02 0.0086 29.2 8.3 35 239-276 784-818 (856)
274 PRK03562 glutathione-regulated 20.9 6E+02 0.013 26.6 9.4 27 38-66 404-430 (621)
275 PF14907 NTP_transf_5: Unchara 20.6 2.4E+02 0.0051 25.1 5.7 47 257-303 59-116 (249)
276 PF01910 DUF77: Domain of unkn 20.4 3.1E+02 0.0067 21.1 5.4 61 254-319 15-75 (92)
277 cd02130 PA_ScAPY_like PA_ScAPY 20.2 4.4E+02 0.0096 20.8 7.6 63 115-177 44-109 (122)
No 1
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-61 Score=472.36 Aligned_cols=287 Identities=39% Similarity=0.587 Sum_probs=260.1
Q ss_pred CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecC
Q 020388 29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG 108 (327)
Q Consensus 29 ~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~G 108 (327)
++.+++.+|+++|+||++|+.+|+.+|+++|++|.+++++++++++++.++++.+....+...+..+++ .+.|||++|
T Consensus 104 ~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~--~~~v~Vv~G 181 (447)
T COG0527 104 GEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLE--EGKVPVVAG 181 (447)
T ss_pred cCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhc--CCcEEEecC
Confidence 678999999999999999999999999999999999999999999988888877766455443766776 889999999
Q ss_pred ceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhh
Q 020388 109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT 188 (327)
Q Consensus 109 fi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a 188 (327)
|+|.+++|+++|||||||||+|++||++|+|+++.||||||||||+|||++|+|++|++|||+||.||+++|++|+||+|
T Consensus 182 F~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHpra 261 (447)
T COG0527 182 FQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRA 261 (447)
T ss_pred ceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhC
Q 020388 189 IIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV 268 (327)
Q Consensus 189 ~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~ 268 (327)
++||++++||++|+|+++|+.+||+|..+..+. ...+++|+..+++++|++.|..|...+|+.+++|..|+++
T Consensus 262 v~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~~-------~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~ 334 (447)
T COG0527 262 VEPAMRSGIPLRIKNTFNPDAPGTLITAETESD-------EPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEA 334 (447)
T ss_pred HHHHHhcCCcEEEEecCCCCCCceEEecCCcCC-------CCceEEEEeCCCeEEEEEEccCccccccHHHHHHHHHHHc
Confidence 999999999999999999998999998875432 2578999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCc--eeEEEEeecc
Q 020388 269 GANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLS--QFSASILSQD 324 (327)
Q Consensus 269 gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~--~~~~~~~~~~ 324 (327)
||+|+||+|+.++.+++|++++.+..++.+.||+.+.....+-.+. --.++|+|..
T Consensus 335 ~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~g 392 (447)
T COG0527 335 GINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAG 392 (447)
T ss_pred CCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccc
Confidence 9999999999999999999999999999999999987655411111 1456666643
No 2
>PLN02551 aspartokinase
Probab=100.00 E-value=1.9e-60 Score=475.72 Aligned_cols=290 Identities=27% Similarity=0.427 Sum_probs=252.8
Q ss_pred HHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHH
Q 020388 16 IRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK 90 (327)
Q Consensus 16 i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (327)
+...++.|+++++ ++++++.+|+++|+||+||+++|+.+|+++|+++.+++++++++++++.++++.++ ..+.+
T Consensus 140 ~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~-~~~~~ 218 (521)
T PLN02551 140 VEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL-EATYP 218 (521)
T ss_pred HHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchh-hhhHH
Confidence 4556777777765 47789999999999999999999999999999999999999988888888877775 34445
Q ss_pred HHHHHhhc---CCCceEEecCceecC-CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEe
Q 020388 91 RLEKWFSQ---SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR 166 (327)
Q Consensus 91 ~i~~~l~~---~~~~vpVv~Gfi~~~-~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~ 166 (327)
.+++.+.. ..+.|||++||+|.+ .+|.+||||||||||+|+.+|++|+|+++.+|||||||||+||+++|+|++++
T Consensus 219 ~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~ 298 (521)
T PLN02551 219 AVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVP 298 (521)
T ss_pred HHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEec
Confidence 56555431 245899999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCC-C----------Cc---------ch--
Q 020388 167 TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV-D----------EN---------ED-- 224 (327)
Q Consensus 167 ~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~-~----------~~---------~~-- 224 (327)
+|||+||.||+++|++||||+|+.||++++||++|+|+++|+.+||+|..... + .+ .|
T Consensus 299 ~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~~~GT~I~~~~~~~~~~v~~It~~~~v~li~i~~~~m~~ 378 (521)
T PLN02551 299 YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLG 378 (521)
T ss_pred ccCHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCCCCCcEEecccccCCCcccceecCCCeEEEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999964321 0 00 00
Q ss_pred -------------------------------------hhh-------------hcCCeeeEEeecCeeEEEeecCCCCCc
Q 020388 225 -------------------------------------EQI-------------IDSPVKGFATIDNLALVNVEGTGMAGV 254 (327)
Q Consensus 225 -------------------------------------~~~-------------~~~~v~~i~~~~~la~IsIvG~~~~~~ 254 (327)
... .-..+..+.+.+++++|++||. |..+
T Consensus 379 ~~g~~arvf~~l~~~~I~Vd~IssSe~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~-~~~~ 457 (521)
T PLN02551 379 QYGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGN-VQRS 457 (521)
T ss_pred cccHHHHHHHHHHHcCCcEEEEeccCCEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEcc-CCCC
Confidence 000 0012346888899999999998 7789
Q ss_pred ccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 255 PGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 255 ~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
+++++++|++|+++||||.||+|++|+.+|||+|+++|.++++++||++|+..
T Consensus 458 ~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~~Ff~~ 510 (521)
T PLN02551 458 SLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHSAFFEG 510 (521)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999864
No 3
>PRK09034 aspartate kinase; Reviewed
Probab=100.00 E-value=4.6e-56 Score=440.23 Aligned_cols=296 Identities=24% Similarity=0.394 Sum_probs=254.3
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHH
Q 020388 16 IRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKW 95 (327)
Q Consensus 16 i~~~~~~l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 95 (327)
+..+++.|..++ .+.+++.+|.++|+||+||+.+|+.+|+++|+++++++++++++++++.++++.++.. +.+.+..+
T Consensus 93 ~~~~l~~l~~~~-~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~-~~~~~~~~ 170 (454)
T PRK09034 93 IEEILEHLANLA-SRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPE-SYDNLKKL 170 (454)
T ss_pred HHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHh-hHHHHHHH
Confidence 344444555444 3577889999999999999999999999999999999999998888888887666543 45677766
Q ss_pred hhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388 96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE 175 (327)
Q Consensus 96 l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~ 175 (327)
+. .+.|||++||+|.+.+|++++||||||||+|+++|++|+|+++.+|||||||||+|||++|+|+++++|||+||.|
T Consensus 171 ~~--~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~e 248 (454)
T PRK09034 171 RD--RDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRE 248 (454)
T ss_pred Hh--cCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHH
Confidence 65 6689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcc
Q 020388 176 MSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVP 255 (327)
Q Consensus 176 l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~ 255 (327)
|+++|+++|||+|+.||++++||++|+|+++|+.+||+|....... ....+++|+..+|+++|++.|.+|.+.+
T Consensus 249 la~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~------~~~~Vk~It~~~~i~~Itv~~~~~~~~~ 322 (454)
T PRK09034 249 LSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNK------NKNPITGIAGDKGFTSIYISKYLMNREV 322 (454)
T ss_pred HHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccC------ccccceEEEecCCEEEEEEccCCCCCCc
Confidence 9999999999999999999999999999999998999997543211 1146999999999999999999899999
Q ss_pred cHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHH-HHHHHHHHhhhcCCCCce----eEEEEeec
Q 020388 256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA-EALESKFREALNAGRLSQ----FSASILSQ 323 (327)
Q Consensus 256 ~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av-~~Lh~~f~~~~~~~~~~~----~~~~~~~~ 323 (327)
++++++|+.|+++||+|+|++ +++.++||++++++.+++. +.|.++|..++....+.. ..++|+|.
T Consensus 323 g~~a~if~~la~~~I~Vd~i~--ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~ 393 (454)
T PRK09034 323 GFGRKVLQILEDHGISYEHMP--SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGE 393 (454)
T ss_pred cHHHHHHHHHHHcCCeEEEEc--CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECC
Confidence 999999999999999999996 6789999999999987765 666666655543323322 44666654
No 4
>PRK06291 aspartate kinase; Provisional
Probab=100.00 E-value=9.8e-56 Score=439.43 Aligned_cols=300 Identities=40% Similarity=0.614 Sum_probs=264.6
Q ss_pred HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCC---ch
Q 020388 15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---FS 86 (327)
Q Consensus 15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~---~~ 86 (327)
.++.+++.|++++. ++++++.+|.++|+||+||+++++.+|+++|+++.+++++++++++++.++.+.++ +.
T Consensus 96 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~ 175 (465)
T PRK06291 96 TIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYE 175 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHH
Confidence 45666777777765 36788999999999999999999999999999999999999977787777765543 34
Q ss_pred HHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEe
Q 020388 87 ESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR 166 (327)
Q Consensus 87 ~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~ 166 (327)
...+.++.+++ .+.|||++||+|.+++|.++|+||||||++|+++|.+|+|+++++||||||||++||+++|+|++++
T Consensus 176 ~~~~~~~~ll~--~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~ 253 (465)
T PRK06291 176 RVKERLEPLLK--EGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIP 253 (465)
T ss_pred HHHHHHHHHhh--cCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEcc
Confidence 44456676776 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEe
Q 020388 167 TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246 (327)
Q Consensus 167 ~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsI 246 (327)
+++|+||.+++++|++++||+|+.+|+++|||++|+|+++|+.+||+|...... ....+++|++.+++++|++
T Consensus 254 ~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~-------~~~~V~~It~~~~valIsI 326 (465)
T PRK06291 254 KISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSES-------SKRVVKAVTLIKNVALINI 326 (465)
T ss_pred ccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccc-------cCcccceEEeeCCEEEEEE
Confidence 999999999999999999999999999999999999999999899999764321 1246899999999999999
Q ss_pred ecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCce----eEEEEee
Q 020388 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ----FSASILS 322 (327)
Q Consensus 247 vG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~----~~~~~~~ 322 (327)
+|.+|.+.+++.+++|++|+++||+|+||+|++|+.+++|+|++++.+++++.||+.|..+. ...++. ..++|+|
T Consensus 327 ~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~~~-~~~i~~~~~~a~IsvvG 405 (465)
T PRK06291 327 SGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGEGL-VRDVTFDKDVCVVAVVG 405 (465)
T ss_pred eCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHHhc-CcceEEeCCEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999987431 122222 4477777
Q ss_pred cc
Q 020388 323 QD 324 (327)
Q Consensus 323 ~~ 324 (327)
..
T Consensus 406 ~g 407 (465)
T PRK06291 406 AG 407 (465)
T ss_pred CC
Confidence 53
No 5
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=100.00 E-value=2.7e-55 Score=460.38 Aligned_cols=301 Identities=39% Similarity=0.655 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388 14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88 (327)
Q Consensus 14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (327)
+.|+..|+.|++++. ++++++.+|+++|+||+||+.+++.+|+++|+++.+++++++++ +++.++++.+++..+
T Consensus 92 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~-t~~~~~~~~~~~~~~ 170 (819)
T PRK09436 92 AKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLL-ADGHYLESTVDIAES 170 (819)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEE-ecCCCCCceechHhh
Confidence 467777888888765 46789999999999999999999999999999999999999855 566777788888888
Q ss_pred HHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388 89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (327)
Q Consensus 89 ~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i 168 (327)
++.+++++.. .+.|||++||+|.+.+|.++|+||||||++|+++|.+|+|+++++|||||||||+||+.+|+|++++++
T Consensus 171 ~~~i~~~~~~-~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~i 249 (819)
T PRK09436 171 TRRIAASFIP-ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSL 249 (819)
T ss_pred HHHHHHHHhc-CCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEe
Confidence 8888888752 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeec
Q 020388 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG 248 (327)
Q Consensus 169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG 248 (327)
+|+|+.+|+++|++++||+|+.+|+++|||++|+|+++|+.+||+|+.+.. . ..+.+++|++.+|+++|+++|
T Consensus 250 sy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~-~------~~~~Vk~It~~~dvalIsV~G 322 (819)
T PRK09436 250 SYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESD-E------DSLPVKGISNLNNMAMFNVSG 322 (819)
T ss_pred cHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCc-c------cccccceEEEeCCEEEEEEEc
Confidence 999999999999999999999999999999999999999999999976421 1 234699999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCcee-------EEEEe
Q 020388 249 TGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQF-------SASIL 321 (327)
Q Consensus 249 ~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~-------~~~~~ 321 (327)
.+|...|++++++|+.|+++||+|+|++|++|+.+|||+|++++.+++++.||+.|..++....++.+ .++|+
T Consensus 323 ~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvv 402 (819)
T PRK09436 323 PGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVV 402 (819)
T ss_pred CCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999877775555443 35666
Q ss_pred ec
Q 020388 322 SQ 323 (327)
Q Consensus 322 ~~ 323 (327)
|.
T Consensus 403 G~ 404 (819)
T PRK09436 403 GD 404 (819)
T ss_pred cc
Confidence 64
No 6
>PRK09181 aspartate kinase; Validated
Probab=100.00 E-value=1.8e-55 Score=435.94 Aligned_cols=282 Identities=21% Similarity=0.343 Sum_probs=237.6
Q ss_pred HHHHHHHHHhhhc------CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHH
Q 020388 16 IRSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE 89 (327)
Q Consensus 16 i~~~~~~l~~~~~------~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (327)
++..++.+.+++. ++++++.+|.++|+||+||+++|+.+|+++|+++.++++..+.. .+ ++ .+.
T Consensus 113 ~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~-~~--------~~-~~~ 182 (475)
T PRK09181 113 ARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDD-DD--------PL-TLD 182 (475)
T ss_pred HHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccC-Cc--------cc-chH
Confidence 4677777777664 57899999999999999999999999999999999998866532 11 11 134
Q ss_pred HHHHHHhhc--CCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCC--CCCeEE
Q 020388 90 KRLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVIL 165 (327)
Q Consensus 90 ~~i~~~l~~--~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~--~~a~~i 165 (327)
+++++.+.. ..+.|||++||+ .+.+|.+||||||||||+|+.+|++|+|+++.+||||+ |||+|||++ |+|+++
T Consensus 183 ~~i~~~l~~~~~~~~v~Vv~GF~-~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i 260 (475)
T PRK09181 183 ERIKKAFKDIDVTKELPIVTGYA-KCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPI 260 (475)
T ss_pred HHHHHHHhhhccCCcEEEecCCc-CCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEc
Confidence 666666653 246899999996 57789999999999999999999999999999999997 999999999 689999
Q ss_pred eecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCC--C-C--------Cc---------ch-
Q 020388 166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP--V-D--------EN---------ED- 224 (327)
Q Consensus 166 ~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~--~-~--------~~---------~~- 224 (327)
++|||+||.||+++|++||||+|++||++++||++|+|+++|+.+||+|.... . + .+ .+
T Consensus 261 ~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~~~GT~I~~~~~~~~~~ik~It~~~~~~~i~i~~~~~~ 340 (475)
T PRK09181 261 GRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHPGTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMV 340 (475)
T ss_pred CccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCCCCCeEEecCcccccccceeEeccCCEEEEEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999996431 0 0 00 00
Q ss_pred ------------------------------------h-h-------hhcCC--eeeEEeecCeeEEEeecCCCCCcccHH
Q 020388 225 ------------------------------------E-Q-------IIDSP--VKGFATIDNLALVNVEGTGMAGVPGTA 258 (327)
Q Consensus 225 ------------------------------------~-~-------~~~~~--v~~i~~~~~la~IsIvG~~~~~~~~v~ 258 (327)
. . ..... ...+. .+++|+|++||.+|. +||++
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss~~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~-~~~~a~VsvVG~gm~-~~gv~ 418 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATNANTITHYLWGSLKTLKRVIAELEKRYPNAEVT-VRKVAIVSAIGSNIA-VPGVL 418 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEecCcEEEEEEcCChHHHHHHHHHHHHhcCCceEE-ECCceEEEEeCCCCC-cccHH
Confidence 0 0 00001 12455 389999999999995 89999
Q ss_pred HHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCC
Q 020388 259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAG 311 (327)
Q Consensus 259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~ 311 (327)
+++|++|++.||||.||+|++|+.+|||+|+++|.++|+++||++|+...+.+
T Consensus 419 ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH~~f~~~~~~~ 471 (475)
T PRK09181 419 AKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALHEALVENHNHG 471 (475)
T ss_pred HHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999998654433
No 7
>PRK09084 aspartate kinase III; Validated
Probab=100.00 E-value=7.7e-55 Score=430.65 Aligned_cols=284 Identities=29% Similarity=0.486 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHhhhcC---CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHH
Q 020388 14 EFIRSTYNFLSNVDSG---HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK 90 (327)
Q Consensus 14 ~~i~~~~~~l~~~~~~---~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (327)
+.++.+++.|++++.+ +.+++.+|.++|+||+||+++++.+|+++|+++.+++++++++ +++.++++.+++..+..
T Consensus 84 ~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~-t~~~~~~~~~~~~~~~~ 162 (448)
T PRK09084 84 EEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMR-TDDRFGRAEPDVAALAE 162 (448)
T ss_pred HHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEE-ecCCCCcccccHHHHHH
Confidence 3678889999998876 4678999999999999999999999999999999999999954 66678778888877766
Q ss_pred HHHHHhhc--CCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388 91 RLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (327)
Q Consensus 91 ~i~~~l~~--~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i 168 (327)
.+.+.+.+ ..+ |||++||+|.+.+|.++||||||||++|+++|++|+|+++++|||||||||+||+++|+|+++++|
T Consensus 163 ~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~i 241 (448)
T PRK09084 163 LAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEI 241 (448)
T ss_pred HHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccC
Confidence 65554432 245 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeec
Q 020388 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG 248 (327)
Q Consensus 169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG 248 (327)
+|+||.+|+++|++++||+++.+|++++||++|+|+++|+.+||+|..... ....+++|+..+|+++|++.|
T Consensus 242 s~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~--------~~~~v~~it~~~~i~lItv~~ 313 (448)
T PRK09084 242 SFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE--------NPPLFRAIALRRNQTLLTLHS 313 (448)
T ss_pred CHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC--------CCCeeEEEEeeCCEEEEEEec
Confidence 999999999999999999999999999999999999999989999976432 123699999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH-HHHHHHHHHHHHhhhc
Q 020388 249 TGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV-KAVAEALESKFREALN 309 (327)
Q Consensus 249 ~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~-~~av~~Lh~~f~~~~~ 309 (327)
.+|.+.+++++++|+.|+++||+|+||++ |+.+|||++++++. .++...+.+++..++.
T Consensus 314 ~~~~~~~g~~a~if~~l~~~~I~Vd~I~s--se~sIs~~i~~~~~~~~~~~~~~~~l~~el~ 373 (448)
T PRK09084 314 LNMLHARGFLAEVFGILARHKISVDLITT--SEVSVSLTLDTTGSTSTGDTLLTQALLTELS 373 (448)
T ss_pred CCCCccccHHHHHHHHHHHcCCeEEEEec--cCcEEEEEEechhhhhhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999994 68999999999884 3455555555555543
No 8
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=8.1e-54 Score=446.71 Aligned_cols=280 Identities=28% Similarity=0.441 Sum_probs=252.9
Q ss_pred HHHHHHHHHHHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHH
Q 020388 14 EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE 93 (327)
Q Consensus 14 ~~i~~~~~~l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 93 (327)
+.++..++.|++++.++++++.+|+++|+||+||+++|+.+|+++|+++.++++++++. +++. +.+.+++..++++++
T Consensus 100 ~~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~-~~~~-~~~~i~~~~~~~~l~ 177 (810)
T PRK09466 100 SRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLR-AERA-AQPQVDEGLSYPLLQ 177 (810)
T ss_pred HHHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHhee-cCCC-CCcccchhhhHHHHH
Confidence 35777888899999889999999999999999999999999999999999999999844 4333 245566666778888
Q ss_pred HHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHH
Q 020388 94 KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA 173 (327)
Q Consensus 94 ~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea 173 (327)
+++....+.|||++||+|.+.+|.++|||||||||+|+.+|++|+|+++.+|||||||||+|||++|+|+++++|||+||
T Consensus 178 ~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea 257 (810)
T PRK09466 178 QLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEA 257 (810)
T ss_pred HHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHH
Confidence 88874445899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCC
Q 020388 174 WEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253 (327)
Q Consensus 174 ~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~ 253 (327)
.||+++|++||||+|++||+++|||++|+|+|+|+.+||+|..... ....++.|+..+|+++|++.|.++.+
T Consensus 258 ~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~--------~~~~v~~It~~~~v~~i~i~~~~~~g 329 (810)
T PRK09466 258 SELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA--------SGTGARIVTSLDDVCLIELQVPASHD 329 (810)
T ss_pred HHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc--------cccceeeeeccCCEEEEEEecCCcCC
Confidence 9999999999999999999999999999999999999999975321 12357889999999999999988888
Q ss_pred cccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 254 ~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
.+++.+++|+.|+++||+|+|++|++++.+++|.++.++.+++.+.|++.
T Consensus 330 ~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~~~~~~l~~~ 379 (810)
T PRK09466 330 FKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVADSALKLLDDA 379 (810)
T ss_pred cchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHHHHHHHHHhh
Confidence 89999999999999999999999988899999999999888888888774
No 9
>PRK05925 aspartate kinase; Provisional
Probab=100.00 E-value=2.2e-53 Score=417.82 Aligned_cols=284 Identities=25% Similarity=0.384 Sum_probs=245.8
Q ss_pred HHHHHHhhh-cCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhh
Q 020388 19 TYNFLSNVD-SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFS 97 (327)
Q Consensus 19 ~~~~l~~~~-~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 97 (327)
..+.|++++ .++.+++.+|+++|+||+||+++++.+|+++|+++.++++++++ .+++.++++.+++..+.+.+..+..
T Consensus 84 ~~~~L~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i-~t~~~~~~a~~~~~~~~~~~~~~~~ 162 (440)
T PRK05925 84 WWERLEHFEDVEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVI-LTDDQYLRAVPDLALMQTAWHELAL 162 (440)
T ss_pred HHHHHHHHHHhCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhE-eecCCccccccCHHHHHHHHHHhhc
Confidence 344455555 36778889999999999999999999999999999999999984 4666788788888777766666543
Q ss_pred cCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHH
Q 020388 98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177 (327)
Q Consensus 98 ~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~ 177 (327)
..+.|||++||+|.+.+|.+++|||||||++|+++|.+|+|+.+++|||||||||+||+.+|+|+++++++|+|+.+|+
T Consensus 163 -~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela 241 (440)
T PRK05925 163 -QEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLA 241 (440)
T ss_pred -cCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHH
Confidence 2568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCC----C-C--------Cc----------------------
Q 020388 178 YFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP----V-D--------EN---------------------- 222 (327)
Q Consensus 178 ~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~----~-~--------~~---------------------- 222 (327)
++|++++||+++++|+++|||++|+|+++|+.+||+|.+.. . . .+
T Consensus 242 ~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~~~~~~ik~It~~~~~~~i~v~~~~~~~~~~~~if~~ 321 (440)
T PRK05925 242 SFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEVSYEPRIKALSLKQNQALWSVDYNSLGLVRLEDVLGI 321 (440)
T ss_pred hCCCCcCCHHHHHHHHHCCCcEEEecCCCCCCCccEEecCCccccCCCceEEEEEeCCEEEEEEecCCcchhHHHHHHHH
Confidence 99999999999999999999999999999998999996531 1 0 00
Q ss_pred -------c-h-----------hh---h----------hcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCC
Q 020388 223 -------E-D-----------EQ---I----------IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA 270 (327)
Q Consensus 223 -------~-~-----------~~---~----------~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI 270 (327)
. + .. . ..+.+..+.+.+++|+|++||.+|+. +++++++|++|++.||
T Consensus 322 l~~~~I~vd~i~s~~~sis~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~~~aL~~~~I 400 (440)
T PRK05925 322 LRSLGIVPGLVMAQNLGVYFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTFTEKLRGYQT 400 (440)
T ss_pred HHHcCCcEEEEeccCCEEEEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHHHHHHhhCCC
Confidence 0 0 00 0 01223467788999999999999987 7899999999999999
Q ss_pred CEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 271 NVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 271 ~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
||.|++| ++.+|||+|+++|.+++++.||++|+..
T Consensus 401 ni~~i~~--s~~~is~vV~~~d~~~av~~LH~~f~~~ 435 (440)
T PRK05925 401 PVFCWCQ--SDMALNLVVNEELAVAVTELLHNDYVKQ 435 (440)
T ss_pred CEEEEEC--CCceEEEEEehHHHHHHHHHHHHHHhcc
Confidence 9999986 4679999999999999999999999865
No 10
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=100.00 E-value=7.6e-52 Score=405.08 Aligned_cols=265 Identities=36% Similarity=0.558 Sum_probs=245.0
Q ss_pred CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCc
Q 020388 30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF 109 (327)
Q Consensus 30 ~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf 109 (327)
..++..+|.++++||++|+.+++.+|+++|+++.++++.+..++++.++++..++...+++.++++++ .+.|||++||
T Consensus 60 ~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVi~g~ 137 (401)
T TIGR00656 60 AITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLE--EGIIVVVAGF 137 (401)
T ss_pred CCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHh--CCCEEEecCc
Confidence 34677899999999999999999999999999999999998787777776655655556578888888 7899999999
Q ss_pred eecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhH
Q 020388 110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI 189 (327)
Q Consensus 110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~ 189 (327)
+|.+.+|.++++||||||++|+.+|.+|+|+++++|||||||||+||+++|+|+++++++|+||.+|+++|++++||+|+
T Consensus 138 ~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~ 217 (401)
T TIGR00656 138 QGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTV 217 (401)
T ss_pred ceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCC
Q 020388 190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVG 269 (327)
Q Consensus 190 ~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~g 269 (327)
.+|++++||++|+|+++|+ +||+|..... ..+.+++|++.+|+++|+++|.+|.+.+++++++|+.|++++
T Consensus 218 ~~a~~~~i~i~i~~~~~~~-~gT~I~~~~~--------~~~~v~~I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~ 288 (401)
T TIGR00656 218 EPAMRSGVPIEVRSSFDPE-EGTLITNSME--------NPPLVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERN 288 (401)
T ss_pred HHHHHCCCeEEEEECCCCC-CCeEEEeCcc--------cCCceEEEEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcC
Confidence 9999999999999999998 8999976421 123699999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 270 ANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 270 I~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
|++.|++|+.|+.+++|+|+++|.+++++.||+.|.
T Consensus 289 I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~ 324 (401)
T TIGR00656 289 INVDLISQTPSETSISLTVDETDADEAVRALKDQSG 324 (401)
T ss_pred CcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 999999998889999999999999999999999873
No 11
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-53 Score=396.02 Aligned_cols=295 Identities=27% Similarity=0.401 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388 14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88 (327)
Q Consensus 14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (327)
..+..+.+.|+++++ +|.+++.+|+++|+||.+|+++|+++|+..|+++..+|...++.++-+.+.+.+.-+ .+
T Consensus 165 ~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~-a~ 243 (559)
T KOG0456|consen 165 AVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILE-AT 243 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHH-HH
Confidence 356677888888887 599999999999999999999999999999999999999998776644444322222 22
Q ss_pred HHHHHHHhh-c--CCCceEEecCcee-cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388 89 EKRLEKWFS-Q--SPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI 164 (327)
Q Consensus 89 ~~~i~~~l~-~--~~~~vpVv~Gfi~-~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~ 164 (327)
.-...+++. . ..+.|||++||+| ....|-.+++||||+|.+|+.+|.+|+++++.+|+|||||+|+||+++|.|++
T Consensus 244 ~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~ 323 (559)
T KOG0456|consen 244 YPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARL 323 (559)
T ss_pred HHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccc
Confidence 222222322 1 3679999999999 46778899999999999999999999999999999999999999999999999
Q ss_pred EeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCC-----------C------------
Q 020388 165 LRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD-----------E------------ 221 (327)
Q Consensus 165 i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~-----------~------------ 221 (327)
+|.+|++||.||+|+|+.|+||-++.++++.+||++|+|..+|..+||.|.++.+- .
T Consensus 324 vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~m~k~~~TsI~lK~nv~mldI~Str~ 403 (559)
T KOG0456|consen 324 VPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRDMSKAGLTSIVLKRNVTMLDIASTRM 403 (559)
T ss_pred cCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchhhhhccceEEEEeccEEEEEecccch
Confidence 99999999999999999999999999999999999999999999999999876420 0
Q ss_pred ---------------------------c-----------c----hhh-------hhcCCeeeEEeecCeeEEEeecCCCC
Q 020388 222 ---------------------------N-----------E----DEQ-------IIDSPVKGFATIDNLALVNVEGTGMA 252 (327)
Q Consensus 222 ---------------------------~-----------~----~~~-------~~~~~v~~i~~~~~la~IsIvG~~~~ 252 (327)
+ . ..| .+-..+-.+...++.++||++|. |+
T Consensus 404 l~q~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~l~~a~eeL~ki~~vdll~~~sIiSLiGn-vq 482 (559)
T KOG0456|consen 404 LGQHGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGELDQAVEELEKIAVVDLLKGRSIISLIGN-VQ 482 (559)
T ss_pred hhhhhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhhHHHHHHHHHHhhhhhhhccchHHhhhhh-hh
Confidence 0 0 000 00111223344568899999997 99
Q ss_pred CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcC
Q 020388 253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNA 310 (327)
Q Consensus 253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~ 310 (327)
...+++.+.|..|+++||||.|||||+|+.+|||+|++++.++++++||+.|++....
T Consensus 483 ~ss~i~~rmF~~l~e~giNvqMISQGAskvNIS~ivne~ea~k~v~~lH~~~~e~~~~ 540 (559)
T KOG0456|consen 483 NSSGILERMFCVLAENGINVQMISQGASKVNISCIVNEKEAEKCVQALHKAFFETLDL 540 (559)
T ss_pred hhhHHHHHHHHHHHhcCcceeeeccccccceEEEEEChHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999876443
No 12
>PRK08841 aspartate kinase; Validated
Probab=100.00 E-value=8.8e-52 Score=401.93 Aligned_cols=268 Identities=22% Similarity=0.307 Sum_probs=232.3
Q ss_pred CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (327)
Q Consensus 31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi 110 (327)
.+++.+|.++|+||.+|+.+++.+|+++|++++++++.++++++++.+++..+... ..+.+.++++ .+.|||++||+
T Consensus 61 ~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~-~~~~i~~ll~--~~~vpVv~Gf~ 137 (392)
T PRK08841 61 PTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHI-DTSTITELLE--QDQIVIVAGFQ 137 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechh-hHHHHHHHHh--CCCEEEEeCCc
Confidence 35678899999999999999999999999999999999987777766654444332 2377888887 78999999999
Q ss_pred ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (327)
Q Consensus 111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~ 190 (327)
|.+++|.++|+||||||++|+.+|.+|+|+++++|||||||||+||+++|+|+++++|+|+||.+|+++|++++||+|++
T Consensus 138 g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~ 217 (392)
T PRK08841 138 GRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQ 217 (392)
T ss_pred ccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEeecCCCCCCceEEeCCCCC---------Cc---------ch----------------------------
Q 020388 191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVD---------EN---------ED---------------------------- 224 (327)
Q Consensus 191 ~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~---------~~---------~~---------------------------- 224 (327)
+|+++|||++|+|++++ .+||+|..+... .+ .+
T Consensus 218 ~a~~~~Ipi~i~n~~~~-~~GT~I~~~~~~~~i~~i~~~~~~~~i~v~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~~~v 296 (392)
T PRK08841 218 HAWKHSVPLRVLSSFEV-GEGTLIKGEAGTQAVCGIALQRDLALIEVESESLPSLTKQCQMLGIEVWNVIEEADRAQIVI 296 (392)
T ss_pred HHHHCCCeEEEEecCCC-CCCeEEEeccCCCcEEEEEEeCCeEEEEeccchHHHHHHHHHHcCCCEEEEEecCCcEEEEE
Confidence 99999999999999986 479999643210 00 00
Q ss_pred h----h-hhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHH
Q 020388 225 E----Q-IIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEA 299 (327)
Q Consensus 225 ~----~-~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~ 299 (327)
. . ........+.+.+++++|+++|.++ ||+++++|++|+++|||+.|+++ |+.+|||+|+++|.++++++
T Consensus 297 ~~~~~~~~~~~~~~~i~~~~~~a~vsvVG~~~---~gv~~~~~~aL~~~~I~i~~i~~--s~~~is~vv~~~~~~~av~~ 371 (392)
T PRK08841 297 KQDACAKLKLVFDDKIRNSESVSLLTLVGLEA---NGMVEHACNLLAQNGIDVRQCST--EPQSSMLVLDPANVDRAANI 371 (392)
T ss_pred CHHHHHHHHHhCcccEEEeCCEEEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEEC--CCcEEEEEEeHHHHHHHHHH
Confidence 0 0 0011123477788999999999874 99999999999999999999984 68999999999999999999
Q ss_pred HHHHHHhh
Q 020388 300 LESKFREA 307 (327)
Q Consensus 300 Lh~~f~~~ 307 (327)
||++|+..
T Consensus 372 lH~~f~~~ 379 (392)
T PRK08841 372 LHKTYVTS 379 (392)
T ss_pred HHHHHcCC
Confidence 99999865
No 13
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=100.00 E-value=1.5e-50 Score=400.43 Aligned_cols=262 Identities=36% Similarity=0.555 Sum_probs=239.3
Q ss_pred ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (327)
Q Consensus 32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~ 111 (327)
+++.+|.++|+||+||+.+++.+|+++|++++++++.++.+++++.+++..+......+.+..+++ .+.|||++||+|
T Consensus 101 ~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVv~G~~g 178 (441)
T TIGR00657 101 KPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLE--EGIIPVVAGFQG 178 (441)
T ss_pred CcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHh--cCCEEEEeCcEe
Confidence 367889999999999999999999999999999999998888877776544334455688888887 789999999999
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHH
Q 020388 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP 191 (327)
Q Consensus 112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~ 191 (327)
.+++|.++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|+++|++++||+|+.+
T Consensus 179 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~ 258 (441)
T TIGR00657 179 ATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEP 258 (441)
T ss_pred eCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCC
Q 020388 192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271 (327)
Q Consensus 192 a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~ 271 (327)
|++++||++|+|+++|+.+||+|.+..... ....+++++..+++++|++.|.+|.+ +++++++|+.|+++||+
T Consensus 259 ~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~------~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~if~~L~~~~I~ 331 (441)
T TIGR00657 259 AMRAKIPIVVKSTFNPEAPGTLIVASTKEM------EEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGIN 331 (441)
T ss_pred HHHcCCeEEEecCCCCCCCceEEEeCCCcc------ccCccceEEEeCCEEEEEEECCCCCC-ccHHHHHHHHHHHcCCe
Confidence 999999999999999988899997643211 12368999999999999999999988 99999999999999999
Q ss_pred EEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388 272 VIMISQASSEHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 272 V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
|++++|++|+.+|+|++++++.+++.+.|..
T Consensus 332 I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~ 362 (441)
T TIGR00657 332 VDLITQSSSETSISFTVDKEDADQAKTLLKS 362 (441)
T ss_pred EEEEEecCCCceEEEEEEHHHHHHHHHHHHH
Confidence 9999999999999999999999999888744
No 14
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=5.8e-48 Score=408.27 Aligned_cols=298 Identities=31% Similarity=0.455 Sum_probs=248.0
Q ss_pred HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC-------CCC
Q 020388 15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVD 82 (327)
Q Consensus 15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~-------~~~ 82 (327)
.+...++.|++++. ++.+++.+|.++|+||+||+.+|+.+|+++|+++.+++++++++++++.++ +..
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~ 172 (861)
T PRK08961 93 VLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVS 172 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccce
Confidence 56677777887774 577889999999999999999999999999999999999999776652111 122
Q ss_pred CCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCC
Q 020388 83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA 162 (327)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a 162 (327)
++.....+.++.++. ..+.|||++||+|.+.+|.++||||||||++|+.+|.+|+|+++++|||||||||+||+.+|+|
T Consensus 173 ~~~~~~~~~~~~~~~-~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a 251 (861)
T PRK08961 173 CQWQSDPALRERFAA-QPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDA 251 (861)
T ss_pred ecHhhHHHHHHHHhc-cCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCc
Confidence 222212234444443 2336999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCee
Q 020388 163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLA 242 (327)
Q Consensus 163 ~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la 242 (327)
+++++++|+||.+|++.|++++||+|+++|+++|||++|+|+++|+.+||+|..+.. ....+++|+..+|++
T Consensus 252 ~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~~--------~~~~v~~It~~~~v~ 323 (861)
T PRK08961 252 RLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDAE--------PVPGVKAISRKNGIV 323 (861)
T ss_pred eEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCCC--------CCCcceeEEEECCEE
Confidence 999999999999999999999999999999999999999999999989999976431 124699999999999
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHH---HHHHHHHHHHHhhhcCCCC-ce-eE
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK---AVAEALESKFREALNAGRL-SQ-FS 317 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~---~av~~Lh~~f~~~~~~~~~-~~-~~ 317 (327)
+|++.|.+|.+.+++.+++|+.|+++||+|+||+ +|+.++||++++.+.. ++++.|.+.|.. +..=.+ +. -.
T Consensus 324 lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~--sse~sis~~i~~~~~~~~~~~~~~l~~~l~~-~~~i~~~~~va~ 400 (861)
T PRK08961 324 LVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS--SSETNVTVSLDPSENLVNTDVLAALSADLSQ-ICRVKIIVPCAA 400 (861)
T ss_pred EEEEecCCccccccHHHHHHHHHHHcCCeEEEEE--cCCCEEEEEEccccccchHHHHHHHHHHHhh-cCcEEEeCCeEE
Confidence 9999999999999999999999999999999998 4689999999998753 566666666532 111111 11 45
Q ss_pred EEEeecc
Q 020388 318 ASILSQD 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
++|+|..
T Consensus 401 ISvVG~g 407 (861)
T PRK08961 401 VSLVGRG 407 (861)
T ss_pred EEEeCCC
Confidence 7777754
No 15
>PRK06635 aspartate kinase; Reviewed
Probab=100.00 E-value=4.1e-47 Score=372.00 Aligned_cols=260 Identities=32% Similarity=0.493 Sum_probs=234.2
Q ss_pred ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (327)
Q Consensus 32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~ 111 (327)
++..+|.++++||.+|+++++.+|+++|++++++++.+++++++.++++.++.. ...+.++.+++ .+.|||++||+|
T Consensus 62 ~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~--~~~ipVi~g~~~ 138 (404)
T PRK06635 62 DPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITD-IDPSRIREALD--EGDVVVVAGFQG 138 (404)
T ss_pred CHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeee-cCHHHHHHHHh--CCCEEEecCccE
Confidence 567889999999999999999999999999999999999777766665433221 12378888888 789999999999
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHH
Q 020388 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP 191 (327)
Q Consensus 112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~ 191 (327)
.+++|.++++||||||++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|++.|++++||+|+.+
T Consensus 139 ~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~ 218 (404)
T PRK06635 139 VDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEY 218 (404)
T ss_pred eCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCC
Q 020388 192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271 (327)
Q Consensus 192 a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~ 271 (327)
++++|+|++|+|++++ ..||+|....... .....+++|+..+++++|+++| |.+.||+++++|++|+++||+
T Consensus 219 ~~~~~i~~~i~~~~~~-~~gT~i~~~~~~~-----~~~~~i~~I~~~~~v~~Isv~g--~~~~~g~l~~i~~~L~~~~I~ 290 (404)
T PRK06635 219 AKKYNVPLRVRSSFSD-NPGTLITGEEEEI-----MEQPVVTGIAFDKDEAKVTVVG--VPDKPGIAAQIFGALAEANIN 290 (404)
T ss_pred HHHcCceEEEEcCCCC-CCCCEEeeCCccc-----cccCceEEEEecCCeEEEEECC--CCCCccHHHHHHHHHHHcCCe
Confidence 9999999999999987 5799997653200 0234689999999999999998 888999999999999999999
Q ss_pred EEEEEecCCc---cEEEEEeccccHHHHHHHHHH
Q 020388 272 VIMISQASSE---HSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 272 V~~Isq~~s~---~sIs~~V~~~d~~~av~~Lh~ 302 (327)
|.+++|+.++ .+++|++++++.+++++.||+
T Consensus 291 i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~ 324 (404)
T PRK06635 291 VDMIVQNVSEDGKTDITFTVPRDDLEKALELLEE 324 (404)
T ss_pred EEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHH
Confidence 9999998766 899999999999999999999
No 16
>PRK07431 aspartate kinase; Provisional
Probab=100.00 E-value=1.3e-46 Score=384.13 Aligned_cols=282 Identities=27% Similarity=0.428 Sum_probs=242.7
Q ss_pred CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecC
Q 020388 29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG 108 (327)
Q Consensus 29 ~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~G 108 (327)
.+.+...+|.++++||.+|+.+++.+|+++|++++++++.++++++++.++..++... ..+.++++++ .+.|||++|
T Consensus 59 ~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~-~~~~l~~~l~--~g~vpVv~g 135 (587)
T PRK07431 59 SNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEI-KTDRIQRHLD--AGKVVVVAG 135 (587)
T ss_pred cCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeec-cHHHHHHHHh--CCCeEEecC
Confidence 3445678899999999999999999999999999999999998877666554332221 1267888887 789999999
Q ss_pred ceecCC--CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccH
Q 020388 109 FIASTP--DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186 (327)
Q Consensus 109 fi~~~~--~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p 186 (327)
|+|.+. +|+++++||||||++|+++|.+|+|+++++||||||||++||+++|+|+++++++|+|+.+|+++|+++|||
T Consensus 136 ~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~ 215 (587)
T PRK07431 136 FQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHP 215 (587)
T ss_pred CcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhH
Confidence 998764 488999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCC-------------------------------C--------------
Q 020388 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD-------------------------------E-------------- 221 (327)
Q Consensus 187 ~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~-------------------------------~-------------- 221 (327)
+|+.+|+++|||++|+|++. +.+||+|.+.... .
T Consensus 216 ~a~~~~~~~~i~i~i~~~~~-~~~GT~i~~~~~~~~~~~~~~~~~~i~gi~~~~~~a~itl~~~~~~~g~~a~if~~l~~ 294 (587)
T PRK07431 216 RAVEIARNYGVPLVVRSSWS-DAPGTLVTSPPPRPRSLGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAA 294 (587)
T ss_pred HHHHHHHHcCCcEEEecCCC-CCCCeEEEeCCcccccccchhcccccceEEEecCceEEEEecCCCcccHHHHHHHHHHH
Confidence 99999999999999999984 4579999633100 0
Q ss_pred ---c-c-hhh---------------------------hhcCCe--eeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHh
Q 020388 222 ---N-E-DEQ---------------------------IIDSPV--KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267 (327)
Q Consensus 222 ---~-~-~~~---------------------------~~~~~v--~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~ 267 (327)
+ . ..| .....+ ..+++.+++++|+++|.+|++.+++++++|++|++
T Consensus 295 ~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~~~~~l~~l~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~ 374 (587)
T PRK07431 295 QGVNVDLIIQSIHEGNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAE 374 (587)
T ss_pred cCCcEEEEEeccCCCCCccEEEEEeHHHHHHHHHHHHHHHHHcCCCcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHH
Confidence 0 0 000 000011 34788899999999999999999999999999999
Q ss_pred CCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCcee
Q 020388 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQF 316 (327)
Q Consensus 268 ~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~ 316 (327)
.||+|.||+ +|+.+|||+|+++|.+++++.||++|+.++....+.|+
T Consensus 375 ~~I~i~~i~--sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~~~~~~~~~ 421 (587)
T PRK07431 375 AGINIRMIS--TSEVKVSCVIDAEDGDKALRAVCEAFELEDSQIEINPT 421 (587)
T ss_pred CCCcEEEEE--cCCCEEEEEEcHHHHHHHHHHHHHHhccCCcccccCcc
Confidence 999999998 78999999999999999999999999999999999997
No 17
>PRK08210 aspartate kinase I; Reviewed
Probab=100.00 E-value=3.6e-46 Score=365.26 Aligned_cols=263 Identities=27% Similarity=0.450 Sum_probs=229.1
Q ss_pred CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (327)
Q Consensus 31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi 110 (327)
.+++.+|.++++||.+|+.+++++|+++|+++.++++.++.+++++.++...+... ..+.++.+++ .+.|||++||+
T Consensus 66 ~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~-~~~~l~~~l~--~~~vpVi~G~~ 142 (403)
T PRK08210 66 ISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEV-NPDRILEALE--EGDVVVVAGFQ 142 (403)
T ss_pred CChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehh-hHHHHHHHHh--cCCEEEeeCee
Confidence 46778899999999999999999999999999999999987777666654333221 2377888887 78999999999
Q ss_pred ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (327)
Q Consensus 111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~ 190 (327)
|.+++|+++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++++|+|+|+.+|+++|++++||+|++
T Consensus 143 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~ 222 (403)
T PRK08210 143 GVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVE 222 (403)
T ss_pred ecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCC
Q 020388 191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA 270 (327)
Q Consensus 191 ~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI 270 (327)
+|++++||++|+|++++ .+||+|.+........ +.....+++|+..+|+++|++.+..+ .||+++++|+.|+++||
T Consensus 223 ~~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~~~-~~~~~~v~~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~I 298 (403)
T PRK08210 223 IAMQANIPLRIRSTYSD-SPGTLITSLGDAKGGI-DVEERLITGIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAGI 298 (403)
T ss_pred HHHHCCCeEEEEecCCC-cCCcEEEecCcccccc-ccccCceEEEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcCC
Confidence 99999999999999985 3699997653211000 00234699999999999999987554 49999999999999999
Q ss_pred CEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388 271 NVIMISQASSEHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 271 ~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
+|+|++|+ ..+++|+++.++.+++...|++
T Consensus 299 ~i~~i~~~--~~~is~~v~~~~~~~a~~~l~~ 328 (403)
T PRK08210 299 SVDFINIF--PTEVVFTVSDEDSEKAKEILEN 328 (403)
T ss_pred eEEEEEec--CceEEEEEcHHHHHHHHHHHHH
Confidence 99999976 4579999999999999888777
No 18
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=100.00 E-value=1.5e-46 Score=350.77 Aligned_cols=196 Identities=28% Similarity=0.467 Sum_probs=178.3
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHH
Q 020388 16 IRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKW 95 (327)
Q Consensus 16 i~~~~~~l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 95 (327)
+...++.+.+++. +++++.+|.++|+||+||+.+|+.+|++.|+++.+++++++++.+++.++++.+... +.+.+.+.
T Consensus 93 i~~~~~~l~~~~~-~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~-~~~~~~~~ 170 (288)
T cd04245 93 IAEILENLANLDY-ANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPE-SYQKIKKL 170 (288)
T ss_pred HHHHHHHHHHhhc-cCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchh-hHHHHHHH
Confidence 4444555555443 467899999999999999999999999999999999999998878888877766653 56778888
Q ss_pred hhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388 96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE 175 (327)
Q Consensus 96 l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~ 175 (327)
++ .+.|||++||+|.+.+|++++||||||||+|+++|.+|+|+++.+|||||||||+||+++|+|+++++|||+||.+
T Consensus 171 ~~--~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~e 248 (288)
T cd04245 171 RD--SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRE 248 (288)
T ss_pred Hh--CCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHH
Confidence 87 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388 176 MSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 176 l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
|+++|+++|||+|+.||++++||++|+|+++|+.+||+|.
T Consensus 249 la~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~ 288 (288)
T cd04245 249 LSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV 288 (288)
T ss_pred HHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence 9999999999999999999999999999999999999984
No 19
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=100.00 E-value=7.9e-46 Score=346.45 Aligned_cols=200 Identities=32% Similarity=0.576 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHH
Q 020388 15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE 89 (327)
Q Consensus 15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (327)
.|...++.|++++. ++++++.+|.++|+||+||+.+++.+|+++|+++.++++++++ .+++.++++.+++..+.
T Consensus 87 ~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i-~t~~~~~~a~~~~~~~~ 165 (292)
T cd04258 87 KLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVL-RTDSRFGRAAPDLNALA 165 (292)
T ss_pred HHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeE-EecCCCccccccHHHHH
Confidence 46677888888875 4678899999999999999999999999999999999999994 56667888889888887
Q ss_pred HHHHHHhhc-CCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388 90 KRLEKWFSQ-SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (327)
Q Consensus 90 ~~i~~~l~~-~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i 168 (327)
+.++.++.. ..+.|||++||+|.+.+|++|||||||||++|+++|.+|+|+++++|||||||||+||+++|+|++++++
T Consensus 166 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~i 245 (292)
T cd04258 166 ELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEI 245 (292)
T ss_pred HHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEecee
Confidence 777776654 2568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
+|+||.+|+++|++++||+|+.++++++||++|+|+++|+.+||+|.
T Consensus 246 sy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~ 292 (292)
T cd04258 246 SFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT 292 (292)
T ss_pred CHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999984
No 20
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=100.00 E-value=7.7e-46 Score=347.48 Aligned_cols=200 Identities=49% Similarity=0.798 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388 14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88 (327)
Q Consensus 14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (327)
+.|+..+..|++++. ++++++.+|.++|+||+||+++|+.+|+++|+++.+++++++ +++++.++++.+++..+
T Consensus 90 ~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~ 168 (294)
T cd04257 90 SALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDGGYLNAVVDIELS 168 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecCCCCceEechHhh
Confidence 356667777777776 578899999999999999999999999999999999999997 45566777778887777
Q ss_pred HHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388 89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (327)
Q Consensus 89 ~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i 168 (327)
.+.+++++... +.|||++||+|.+.+|.++++||||||++|+++|.+|+|+++++|||||||||+||+.+|+|++++++
T Consensus 169 ~~~l~~~~~~~-~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~i 247 (294)
T cd04257 169 KERIKAWFSSN-GKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSL 247 (294)
T ss_pred HHHHHHHHhcC-CCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence 88999888732 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
+|+||.+++++|++++||+|+.+|+++|||++|+|+++|+.+||+|+
T Consensus 248 s~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~ 294 (294)
T cd04257 248 SYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS 294 (294)
T ss_pred CHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence 99999999999999999999999999999999999999999999984
No 21
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=100.00 E-value=1.7e-45 Score=344.96 Aligned_cols=200 Identities=43% Similarity=0.740 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388 14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88 (327)
Q Consensus 14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (327)
+.+...++.|++++. ++++++.+|.++|+||+||+++++.+|+++|+++.++++++++. +++.++++.+++..+
T Consensus 89 ~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~-t~~~~~~~~~~~~~s 167 (293)
T cd04243 89 AALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLL-TDDGFLNAVVDLKLS 167 (293)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEE-ecCCCCcchhhhHHH
Confidence 456777888888775 46789999999999999999999999999999999999999854 555677777888777
Q ss_pred HHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388 89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (327)
Q Consensus 89 ~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i 168 (327)
.+.++.++... +.|||++||+|.+.+|+++++||||||++|+++|.+|+|+++++|||||||||+||+++|+|++++++
T Consensus 168 ~~~~~~~~~~~-~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~l 246 (293)
T cd04243 168 KERLAQLLAEH-GKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKEL 246 (293)
T ss_pred HHHHHHHHhcC-CCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence 88899888721 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
+|+|+.+|+++|++++||+|+.+|+++|||++|+|+++|+.+||+|+
T Consensus 247 s~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~ 293 (293)
T cd04243 247 SYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS 293 (293)
T ss_pred CHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence 99999999999999999999999999999999999999999999984
No 22
>PRK08373 aspartate kinase; Validated
Probab=100.00 E-value=1.1e-44 Score=344.59 Aligned_cols=241 Identities=27% Similarity=0.398 Sum_probs=208.1
Q ss_pred CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHH---HHHHHHhhcCCCceEEec
Q 020388 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE---KRLEKWFSQSPSNTIIAT 107 (327)
Q Consensus 31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~l~~~~~~vpVv~ 107 (327)
++++.+|.++|+||++|+.+++.+|+++|+++.+++++++ +.+++.++++.++...+. +.+..+++ .+.|||++
T Consensus 97 ~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a~i~~~~s~~~~~~l~~~l~--~g~VpVv~ 173 (341)
T PRK08373 97 PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDIKKSKRNVKILYELLE--RGRVPVVP 173 (341)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccceeechhhhhhhHHHHHHHHh--CCcEEEEe
Confidence 4578899999999999999999999999999999999998 456667777766654433 45666666 78999999
Q ss_pred CceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHh
Q 020388 108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (327)
Q Consensus 108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~ 187 (327)
||++ +.+|.++++||||||++|+.+|++|+|+++++||||||||++||+.+|+|+++++++|+||.+++++|++++||+
T Consensus 174 Gf~g-~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ 252 (341)
T PRK08373 174 GFIG-NLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWK 252 (341)
T ss_pred CCcc-CCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHH
Confidence 9998 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHh
Q 020388 188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267 (327)
Q Consensus 188 a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~ 267 (327)
|+++|++ +||++|+|+++|. +||+|...... ...+.++ +..|.|.|+++|. .+.|++
T Consensus 253 ai~~a~~-~Ipi~v~~t~~~~-~GT~I~~~~~~--------~~~~~~~-~~~~~~~i~~~~~--~~~~~~---------- 309 (341)
T PRK08373 253 AIEPVKG-KIPIIFGRTRDWR-MGTLVSNESSG--------MPILVHK-VGEEHAEILVVGV--EEEIGY---------- 309 (341)
T ss_pred HHHHHHc-CCcEEEecCCCCC-CCcEEecCCCC--------CceEEEE-ecCCEEEEEEecc--CCCCCC----------
Confidence 9999999 9999999999984 79999764321 2457777 8889999999983 333332
Q ss_pred CCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 268 ~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
. ... -....+++.|++++..++++.+|+..+
T Consensus 310 ---~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (341)
T PRK08373 310 ---P--VYE--EGEFWFKIKVPKEELIEALREIHRRVF 340 (341)
T ss_pred ---C--cee--cCCceEEEecCHHHHHHHHHHHHHHhh
Confidence 2 122 236889999999999999999999764
No 23
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=100.00 E-value=3.9e-45 Score=343.34 Aligned_cols=201 Identities=29% Similarity=0.512 Sum_probs=172.9
Q ss_pred HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCC-chHH
Q 020388 15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD-FSES 88 (327)
Q Consensus 15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~-~~~~ 88 (327)
.++..++.|++++. ++++++.+|.++|+||+||+++|+.+|+++|+++.++++++++. ++......... +...
T Consensus 99 ~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~-~~~~~~~~~~~~~~~~ 177 (306)
T cd04247 99 EINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVD-LDFSIEALDQTFYDEL 177 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHhee-cCCCccccccchhHHH
Confidence 55667777777775 57789999999999999999999999999999999999999854 43321011111 2233
Q ss_pred HHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388 89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (327)
Q Consensus 89 ~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i 168 (327)
.+.+...+....+.|||++||+|.+.+|.+|||||||||++|+++|..|+|+++++|||||||||+||+++|+|+++++|
T Consensus 178 ~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~i 257 (306)
T cd04247 178 AQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSI 257 (306)
T ss_pred HHHHHHHhhccCCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEeccc
Confidence 34443444323468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeC
Q 020388 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216 (327)
Q Consensus 169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~ 216 (327)
+|+||.+|+++|++|+||+|+.||+++|||++|+|+++|+.+||+|.+
T Consensus 258 s~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~ 305 (306)
T cd04247 258 TPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP 305 (306)
T ss_pred CHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence 999999999999999999999999999999999999999999999965
No 24
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=100.00 E-value=4.7e-45 Score=343.13 Aligned_cols=200 Identities=41% Similarity=0.636 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCC---c
Q 020388 14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F 85 (327)
Q Consensus 14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~---~ 85 (327)
+.|+.+++.|++++. ++.+++.+|.++|+||+||+++++.+|+++|+++.+++++++++++++.+++..++ .
T Consensus 91 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~ 170 (298)
T cd04244 91 SIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATY 170 (298)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHH
Confidence 467777888888875 46788999999999999999999999999999999999999987777766654432 3
Q ss_pred hHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388 86 SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (327)
Q Consensus 86 ~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i 165 (327)
......+..+++ .+.|||++||+|.+.+|+++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++
T Consensus 171 ~~i~~~l~~ll~--~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i 248 (298)
T cd04244 171 ERVRKRLLPMLE--DGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTI 248 (298)
T ss_pred HHHHHHHHHHhh--cCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEc
Confidence 333344555555 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388 166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 166 ~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
++++|+||.+|+++|++++||+|+.+|+++|||++|+|+++|+.+||+|.
T Consensus 249 ~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~ 298 (298)
T cd04244 249 PRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT 298 (298)
T ss_pred CccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence 99999999999999999999999999999999999999999999999984
No 25
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00 E-value=2.4e-44 Score=337.36 Aligned_cols=199 Identities=34% Similarity=0.543 Sum_probs=178.9
Q ss_pred HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCC-------CC
Q 020388 15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-------VD 82 (327)
Q Consensus 15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~-------~~ 82 (327)
.++..++.|++++. ++++++.+|.++|+||+||+.+++.+|+++|+++.++++++++++++ .+++ +.
T Consensus 85 ~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~-~~~~~~~~~~~a~ 163 (295)
T cd04259 85 LLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATP-TLGGETMNYLSAR 163 (295)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecc-cccccccccccce
Confidence 56677777777764 46889999999999999999999999999999999999999966553 4432 34
Q ss_pred CCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCC
Q 020388 83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA 162 (327)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a 162 (327)
++...+.+++.+.+.. .+.|||++||+|.+.+|.++||||||||++|+.+|.+|+|+++++||||||||++||+.+|+|
T Consensus 164 v~~~~~~~~l~~~l~~-~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a 242 (295)
T cd04259 164 CESEYADALLQKRLAD-GAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHA 242 (295)
T ss_pred ehhhhhHHHHHHHHhc-CCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCC
Confidence 4445566788887762 257999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388 163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 163 ~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
+++++++|+||.+|+++|++++||+|+++|+++|||++|+|+++|+.+||+|+
T Consensus 243 ~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~ 295 (295)
T cd04259 243 RLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT 295 (295)
T ss_pred eEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence 99999999999999999999999999999999999999999999999999984
No 26
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=100.00 E-value=3.4e-42 Score=320.06 Aligned_cols=189 Identities=20% Similarity=0.300 Sum_probs=159.5
Q ss_pred HHHHHHHHhhhc------CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHH
Q 020388 17 RSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK 90 (327)
Q Consensus 17 ~~~~~~l~~~~~------~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (327)
+.++.++..++. ++++++.+|.++|+||+||+.+++.+|+++|+++++++...+.... .. . +...+.+
T Consensus 108 ~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~--~~---t-~~~~i~~ 181 (304)
T cd04248 108 RACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSG--DM---T-LDERISE 181 (304)
T ss_pred HHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccC--CC---C-cHHHHHH
Confidence 344555555552 4789999999999999999999999999999999999987663211 11 1 1222223
Q ss_pred HHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCC--CCCeEEeec
Q 020388 91 RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVILRTL 168 (327)
Q Consensus 91 ~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~--~~a~~i~~i 168 (327)
.+..+ . ..+.|||++|| +.+.+|.++|||||||||+|+.+|++|+|++++|||||+ |||+||+++ ++|++++++
T Consensus 182 ~~~~~-~-~~~~v~IvtGF-~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~l 257 (304)
T cd04248 182 AFRDI-D-PRDELPIVTGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRT 257 (304)
T ss_pred HHHhh-c-cCCcEEEeCCc-cCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCcc
Confidence 33332 1 25689999999 567799999999999999999999999999999999996 999999999 589999999
Q ss_pred CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
||+||.||+++|++++||+|++||+++|||++|+|+|+|+.+||+|+
T Consensus 258 sY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P~~~GTlIt 304 (304)
T cd04248 258 NYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGTLIT 304 (304)
T ss_pred CHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999984
No 27
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=100.00 E-value=2.9e-41 Score=319.62 Aligned_cols=231 Identities=25% Similarity=0.392 Sum_probs=193.8
Q ss_pred CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHH---HHHhhcCCCceEEec
Q 020388 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL---EKWFSQSPSNTIIAT 107 (327)
Q Consensus 31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~l~~~~~~vpVv~ 107 (327)
++++.+|+++|+||+||+++++. |+++.++++++++ .+++.++++.+++..+...+ ..++. .+.|||++
T Consensus 92 ~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~i-~t~~~~~~a~~~~~~~~~~~~~l~~~l~--~g~IpVv~ 163 (327)
T TIGR02078 92 PKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIF-FAKGDFGNAFIDIKKSKRNAKILYEVLE--SGKIPVIP 163 (327)
T ss_pred CChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHHh-ccCCcCCceeechhhhHhhHHHHHHHHh--CCcEEEEe
Confidence 35678999999999999999886 8999999999984 46667777778865555444 44454 78999999
Q ss_pred CceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHh
Q 020388 108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (327)
Q Consensus 108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~ 187 (327)
||++ +.+|.++++||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+||.+++++|++++||+
T Consensus 164 Gf~~-~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~ 242 (327)
T TIGR02078 164 GFYG-NLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWK 242 (327)
T ss_pred CCcc-CCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHH
Confidence 9998 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecC-eeEEEeecCCCCCcccHHHHHHHHHH
Q 020388 188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN-LALVNVEGTGMAGVPGTANAIFGAVK 266 (327)
Q Consensus 188 a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~-la~IsIvG~~~~~~~~v~a~if~~L~ 266 (327)
|+++|+++|||++|+|+++|+ +||+|+.... ....+++++. ++.|++. +.+
T Consensus 243 a~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~-----------~~~~i~~~~~~i~~v~~~-~~~--------------- 294 (327)
T TIGR02078 243 AADLAKEYKIPVLFGRTRDWR-MGTLISNRSS-----------GMPLMVYKDGELLVVNVR-REI--------------- 294 (327)
T ss_pred HHHHHHHCCCeEEEEeCCCcC-CCcEEecCCC-----------CCcEEEEccCcEEEEEEe-ecc---------------
Confidence 999999999999999999986 7999976432 1223666666 7766661 111
Q ss_pred hCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388 267 DVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 267 ~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
+-..+. ..+..+++.|++++..++++.||+..
T Consensus 295 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (327)
T TIGR02078 295 ----SYPVIE--EGEFWKKYKVPKEDGIEIIRELHRKV 326 (327)
T ss_pred ----cccccc--cCCceEEEecCHHHHHHHHHHHHhhh
Confidence 111122 23678999999999999999999864
No 28
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=2.8e-37 Score=282.45 Aligned_cols=181 Identities=33% Similarity=0.481 Sum_probs=165.2
Q ss_pred CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (327)
Q Consensus 31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi 110 (327)
.+.+.++.++++||++++.++++.|+++|++++++++.++.+++++.++..++... ..+.++.+++ .+.|||++||+
T Consensus 59 ~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~~-~~~~l~~ll~--~~~ipVi~G~~ 135 (239)
T cd04261 59 PPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDI-DPDRIRELLE--EGDVVIVAGFQ 135 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceechh-hHHHHHHHHH--cCCeEEEcCcc
Confidence 45778899999999999999999999999999999999987766655543333221 2278888888 78999999999
Q ss_pred ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (327)
Q Consensus 111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~ 190 (327)
+.+++|.++++|||++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|++
T Consensus 136 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~ 215 (239)
T cd04261 136 GINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVE 215 (239)
T ss_pred ccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEeecCCCCCCceEEe
Q 020388 191 PVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 191 ~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
+|+++|||++|+|+++|+ +||+|.
T Consensus 216 ~~~~~~i~i~I~n~~~~~-~gt~i~ 239 (239)
T cd04261 216 LAKKYGVPLRVLSSFSEE-PGTLIT 239 (239)
T ss_pred HHHHcCCeEEEecCCCCC-CCcEeC
Confidence 999999999999999998 999984
No 29
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=100.00 E-value=5.6e-37 Score=281.27 Aligned_cols=182 Identities=34% Similarity=0.509 Sum_probs=164.9
Q ss_pred CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCc
Q 020388 30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF 109 (327)
Q Consensus 30 ~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf 109 (327)
..++..++.++++||.+++.+++++|+++|+++.++++.++.+++.+.++...+.... .+.++.+++ .+.|||++||
T Consensus 63 ~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~~-~~~l~~ll~--~g~VPVv~g~ 139 (244)
T cd04260 63 DISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVN-PKKILSALK--EGDVVVVAGF 139 (244)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeeccC-HHHHHHHHh--CCCEEEecCC
Confidence 4567789999999999999999999999999999999999877776655432221111 266888887 7899999999
Q ss_pred eecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhH
Q 020388 110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI 189 (327)
Q Consensus 110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~ 189 (327)
++.+++|++++++|||||++|+.+|.+|+|+++++||||||||++||+.++++++|++|+|+|+.++++.|++++||+|+
T Consensus 140 ~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~ 219 (244)
T cd04260 140 QGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAV 219 (244)
T ss_pred cccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEeecCCCCCCceEEe
Q 020388 190 IPVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 190 ~~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
++|+++++|++|+|+++|+ +||+|+
T Consensus 220 ~~~~~~~i~v~I~~~~~~~-~gt~i~ 244 (244)
T cd04260 220 EIAMQANIPIRIRSTMSEN-PGTLIT 244 (244)
T ss_pred HHHHHcCCeEEEecCCCCC-CCCEeC
Confidence 9999999999999999988 899984
No 30
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00 E-value=2.6e-37 Score=280.59 Aligned_cols=198 Identities=39% Similarity=0.655 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHhhhc------------CCCChhHHH--HhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC
Q 020388 14 EFIRSTYNFLSNVDS------------GHATESFTD--FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN 79 (327)
Q Consensus 14 ~~i~~~~~~l~~~~~------------~~~~~~~~d--~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~ 79 (327)
+.++...+.+.++ . +..+....+ .++|+||.+|+.+++++|+++|+++.++++.++++++++. +
T Consensus 15 ~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~-~ 92 (227)
T cd04234 15 ERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELALLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDN-H 92 (227)
T ss_pred HHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCc-c
Confidence 4666666666664 2 123333322 6889999999999999999999999999999998876543 2
Q ss_pred CCCCCchHHHHHHHHHhhcCC-CceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCC
Q 020388 80 QVDPDFSESEKRLEKWFSQSP-SNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158 (327)
Q Consensus 80 ~~~~~~~~~~~~i~~~l~~~~-~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~ 158 (327)
..........+.++++++ . +.|||++||++.+++|.++++||||||++|+.+|.+|+|+++++|||||||||+||+.
T Consensus 93 ~~~~~~~~~~~~l~~~l~--~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~ 170 (227)
T cd04234 93 GAARIIEISYERLKELLA--EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170 (227)
T ss_pred chhhHHHHHHHHHHHHHh--hCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence 222334455688888888 7 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 159 ~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
+|+++++++++|+|+.+++..|+++|||+|+++|.++|+|++|+|+++|+.+||+|.
T Consensus 171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~~~gT~I~ 227 (227)
T cd04234 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT 227 (227)
T ss_pred CCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999988899984
No 31
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=1.4e-36 Score=277.70 Aligned_cols=180 Identities=33% Similarity=0.513 Sum_probs=164.0
Q ss_pred ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (327)
Q Consensus 32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~ 111 (327)
+...++.++++||.+++.++++.|+++|+++.++++.++.+.+..++++.++.. ...+.++++++ .+.|||++||+|
T Consensus 60 ~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~-~~~~~l~~ll~--~g~ipVi~g~~~ 136 (239)
T cd04246 60 SPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIID-IDPKRILEALE--EGDVVVVAGFQG 136 (239)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeech-hhHHHHHHHHh--cCCEEEEcCccc
Confidence 567889999999999999999999999999999999997666655554333322 23478888888 789999999999
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHH
Q 020388 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP 191 (327)
Q Consensus 112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~ 191 (327)
.+++|.+++++||++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|+++
T Consensus 137 ~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~ 216 (239)
T cd04246 137 VNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVEL 216 (239)
T ss_pred cCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEeecCCCCCCceEEe
Q 020388 192 VMRYDIPIVIRNIFNLSVPGIMIC 215 (327)
Q Consensus 192 a~~~~I~v~I~n~~~~e~~GT~I~ 215 (327)
|+++|||++|+|+++|+ +||+|+
T Consensus 217 a~~~gi~i~i~~~~~~~-~gt~i~ 239 (239)
T cd04246 217 AKKYNVPLRVRSSFSEN-PGTLIT 239 (239)
T ss_pred HHHCCCeEEEecCCCCC-CCcEeC
Confidence 99999999999999998 999984
No 32
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.97 E-value=2.9e-29 Score=229.71 Aligned_cols=180 Identities=37% Similarity=0.498 Sum_probs=156.5
Q ss_pred CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (327)
Q Consensus 31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi 110 (327)
.++...+.+++.||.+++.++++.|+++|+++.++++.++.+.+++ ++..........+.++++++ .+.|||++||.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~~~l~--~~~ipVv~g~~ 137 (248)
T cd02115 61 ITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPN-QGHVGKITKVSTDRLKSLLE--NGILPILSGFG 137 (248)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCC-CCCcccceeeCHHHHHHHHh--CCcEEEecCeE
Confidence 4567888999999999999999999999999999999998776543 33322222223478888888 78999999998
Q ss_pred ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (327)
Q Consensus 111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~ 190 (327)
+.+.+ ...+++|++||++|+.+|.+|+|+++++||||||||++||+++++++++++|+++|+.+++..|..++||+++.
T Consensus 138 ~~~~~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~ 216 (248)
T cd02115 138 GTDEK-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAAD 216 (248)
T ss_pred eccCC-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHH
Confidence 87765 67788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEeecCC--------CCCCceEE
Q 020388 191 PVMRYDIPIVIRNIFN--------LSVPGIMI 214 (327)
Q Consensus 191 ~a~~~~I~v~I~n~~~--------~e~~GT~I 214 (327)
++.++|++++|.++++ ++..||.|
T Consensus 217 ~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I 248 (248)
T cd02115 217 PAARAGIPVRIANTENPGALALFTPDGGGTLI 248 (248)
T ss_pred HHHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence 9999999999999887 44556654
No 33
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.93 E-value=2.5e-25 Score=202.59 Aligned_cols=182 Identities=21% Similarity=0.290 Sum_probs=145.0
Q ss_pred ccHHHHHHHHHHHHhhhc----------C----------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccce
Q 020388 11 LSYEFIRSTYNFLSNVDS----------G----------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV 70 (327)
Q Consensus 11 ~~~~~i~~~~~~l~~~~~----------~----------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~ 70 (327)
+..+.|+...+.|.++.+ + +.++...|.+.+.||+||+.+++.+|.++|+++.++++.
T Consensus 20 ~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~-- 97 (231)
T PRK14558 20 FDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQI-- 97 (231)
T ss_pred cCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc--
Confidence 556677777777665532 1 234556788888899999999999999999999998852
Q ss_pred eeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCc
Q 020388 71 LIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150 (327)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~G 150 (327)
.. . .. + .....+.+..+++ .+.|||++||.+ .. .+.+|++|+++|..|+|+++++||||||
T Consensus 98 ~~-~-~~-----~-~~~~~~~i~~ll~--~g~vpV~~G~~~---~~------~~~~D~~a~~lA~~l~a~~l~~~tdVdG 158 (231)
T PRK14558 98 VN-L-PS-----V-EPINYDDIELYFR--AGYIVIFAGGTS---NP------FFTTDTAAALRAVEMKADILIKATKVDG 158 (231)
T ss_pred cc-c-ch-----h-hhhhHHHHHHHHH--CCCEEEEECCCC---CC------CCCcHHHHHHHHHHcCCCEEEEEecCCe
Confidence 11 1 11 1 1223477888888 789999999853 11 1236999999999999999999999999
Q ss_pred cccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCC---------CCceEEeC
Q 020388 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICR 216 (327)
Q Consensus 151 i~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e---------~~GT~I~~ 216 (327)
||++||+++|+|+++++++++|+.++ |+++|||+|+++|+++|+|++|.|+++|. ..||.|.+
T Consensus 159 vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 159 IYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred eEccCCCCCCCCeEcccccHHHHHHc---CcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 99999999999999999999998876 78999999999999999999999987543 35777743
No 34
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.93 E-value=1.3e-24 Score=200.31 Aligned_cols=166 Identities=17% Similarity=0.288 Sum_probs=134.8
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (327)
Q Consensus 34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~ 113 (327)
..++.++++||..+.++++..|+++|+++. ++++ +++.+.+... +....+.++.+++ .+.|||+++
T Consensus 65 ~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~-----q~l~-t~~~~~~~~~-~~~~~~~i~~ll~--~g~iPVv~~----- 130 (251)
T cd04242 65 PEKQALAAVGQSLLMALYEQLFAQYGIKVA-----QILL-TRDDFEDRKR-YLNARNTLETLLE--LGVIPIINE----- 130 (251)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-----EEEE-ehhHhcchHH-HHHHHHHHHHHHH--CCCEEEEcC-----
Confidence 556899999999999999999999999973 3333 4333322111 2223466788887 789999964
Q ss_pred CCCCeee--ecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecC--HHHHHHHH-----hcCCCcc
Q 020388 114 PDNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS--YQEAWEMS-----YFGANVL 184 (327)
Q Consensus 114 ~~g~~~~--lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is--~~ea~~l~-----~~g~~v~ 184 (327)
++.+++ ++||++|++|+++|.+|+|++++|||||||||++||+.+|++++|++++ ++|+.+++ .+|+++|
T Consensus 131 -~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm 209 (251)
T cd04242 131 -NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGM 209 (251)
T ss_pred -CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCc
Confidence 234444 7899999999999999999999999999999999999999999999999 99999985 5788999
Q ss_pred cH--hhHHHHHhCCCCEEEeecCCCC---------CCceEE
Q 020388 185 HP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMI 214 (327)
Q Consensus 185 ~p--~a~~~a~~~~I~v~I~n~~~~e---------~~GT~I 214 (327)
+| +++..+.++|++++|.|++.|+ ..||.|
T Consensus 210 ~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i 250 (251)
T cd04242 210 RTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLF 250 (251)
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEe
Confidence 99 6889999999999999987553 357765
No 35
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.92 E-value=3.4e-24 Score=194.83 Aligned_cols=152 Identities=22% Similarity=0.265 Sum_probs=130.4
Q ss_pred hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (327)
Q Consensus 33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~ 112 (327)
+...+.+.+.|+++++.+|+..|.++|+++..+++.++..++. ..+. +.+..+++ .+.|||++||.+.
T Consensus 62 ~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~------~~~~----~~l~~~l~--~g~ipVi~g~~g~ 129 (229)
T cd04239 62 RATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE------PYIR----RRAIRHLE--KGRIVIFGGGTGN 129 (229)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc------cccH----HHHHHHHh--CCCEEEEeCccCC
Confidence 4557788899999999999999999999999999987744321 1223 66888887 8899999999642
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHH
Q 020388 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV 192 (327)
Q Consensus 113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a 192 (327)
. . +.+|++|+.+|.+|+|+++++||||||||++||+.+|++++|++++++|+.+++. +++||.|++++
T Consensus 130 ~-----~----~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~ 197 (229)
T cd04239 130 P-----G----FTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLC 197 (229)
T ss_pred C-----C----CCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHH
Confidence 2 1 2479999999999999999999999999999999999999999999999988864 88999999999
Q ss_pred HhCCCCEEEeecCCCC
Q 020388 193 MRYDIPIVIRNIFNLS 208 (327)
Q Consensus 193 ~~~~I~v~I~n~~~~e 208 (327)
.++|+|++|.|++.|+
T Consensus 198 ~~~~i~v~I~~g~~~~ 213 (229)
T cd04239 198 RRNKIPIIVFNGLKPG 213 (229)
T ss_pred HHCCCeEEEECCCChh
Confidence 9999999999987653
No 36
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.92 E-value=2.1e-25 Score=203.42 Aligned_cols=112 Identities=35% Similarity=0.488 Sum_probs=107.6
Q ss_pred HHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecC
Q 020388 90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS 169 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is 169 (327)
+.++++++ .+.|||++||.+.+.+|++++++++++|++|+.||.+|+|++++|||||||||++||+.+|+++++++|+
T Consensus 125 ~~i~~~l~--~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~ 202 (242)
T PF00696_consen 125 EAIRELLE--QGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELS 202 (242)
T ss_dssp HHHHHHHH--TTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEE
T ss_pred HHHHHHHH--CCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEee
Confidence 78888998 7999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------hcCCCcccHhhHHHHHhCCCCEEEee
Q 020388 170 YQEAWEMS------YFGANVLHPRTIIPVMRYDIPIVIRN 203 (327)
Q Consensus 170 ~~ea~~l~------~~g~~v~~p~a~~~a~~~~I~v~I~n 203 (327)
++|+.+++ ..|++++||.|+++++++++|++|+|
T Consensus 203 ~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 203 YDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp HHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 99999999 78899999999999999999999986
No 37
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.92 E-value=5.4e-24 Score=193.72 Aligned_cols=150 Identities=23% Similarity=0.281 Sum_probs=124.2
Q ss_pred HHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCC
Q 020388 35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP 114 (327)
Q Consensus 35 ~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~ 114 (327)
..+.+.+.++++++.+++..|+++|+++..+++..+...++ .. ..+.+.++++ .+.|||++|+.+
T Consensus 66 ~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~~~------~~----~~~~~~~~l~--~g~vPVv~g~~~--- 130 (231)
T PRK00358 66 TADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAE------PY----IRRRAIRHLE--KGRVVIFAAGTG--- 130 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccccC------cc----cHHHHHHHHH--CCCEEEEECCCC---
Confidence 45777788999999999999999999998776654422221 01 1255678887 789999988632
Q ss_pred CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHh
Q 020388 115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR 194 (327)
Q Consensus 115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~ 194 (327)
+. .+.+|++|+.+|.+|+|+++++||||||||++||+.+|+|+++++++++|+.++ |++++|+.++++|.+
T Consensus 131 ~~------~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~ 201 (231)
T PRK00358 131 NP------FFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARD 201 (231)
T ss_pred CC------CCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHH
Confidence 11 134799999999999999999999999999999999999999999999987776 899999999999999
Q ss_pred CCCCEEEeecCCCC
Q 020388 195 YDIPIVIRNIFNLS 208 (327)
Q Consensus 195 ~~I~v~I~n~~~~e 208 (327)
+|++++|.|+++|+
T Consensus 202 ~~i~v~I~~g~~~~ 215 (231)
T PRK00358 202 NKIPIIVFNMNKPG 215 (231)
T ss_pred cCCcEEEECCCCch
Confidence 99999999987553
No 38
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.92 E-value=7.5e-24 Score=196.59 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=131.4
Q ss_pred hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (327)
Q Consensus 33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~ 112 (327)
.+.++.++|+||.++..++..+|+++|+++ +++++ +++.+.+... +....+.++.+++ .|.|||+++
T Consensus 74 ~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~ll-T~~~~~~~~~-~~~~~~~l~~ll~--~g~IPVv~~---- 140 (266)
T PRK12314 74 LAEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQILL-TRDDFDSPKS-RANVKNTFESLLE--LGILPIVNE---- 140 (266)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEEEE-ecccccchHH-HHHHHHHHHHHHH--CCCEEEEcC----
Confidence 466799999999999999999999999975 56644 4444433222 2234467888887 789999964
Q ss_pred CCCCCeeeec----CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH--HHHHHHHhc-----CC
Q 020388 113 TPDNIPTTLK----RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSYF-----GA 181 (327)
Q Consensus 113 ~~~g~~~~lg----rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~~~-----g~ 181 (327)
++.+++.+ ||++|++|+++|.+|+|+.++|||||||||++||+.+|+|++|++|++ .|..+++.. |+
T Consensus 141 --nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~t 218 (266)
T PRK12314 141 --NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGT 218 (266)
T ss_pred --CCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCccc
Confidence 23333333 788999999999999999999999999999999999999999999986 555555432 44
Q ss_pred CcccH--hhHHHHHhCCCCEEEeecCCC---------CCCceEEeC
Q 020388 182 NVLHP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR 216 (327)
Q Consensus 182 ~v~~p--~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~ 216 (327)
++|.| +|+..|.++|++++|.+++.| +..||+|.+
T Consensus 219 GGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 219 GGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAP 264 (266)
T ss_pred CchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEcc
Confidence 55555 699999999999999998654 346998865
No 39
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.90 E-value=4.4e-23 Score=189.20 Aligned_cols=162 Identities=17% Similarity=0.272 Sum_probs=127.4
Q ss_pred ChhHHHHhhhhcHHHHHHHHHHHHHHc-CCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388 32 TESFTDFVVGHGELWSAQMLAAVVRKN-GIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (327)
Q Consensus 32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~-Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi 110 (327)
+....|.+.++||++|+.++...|++. +.++. +.++..++... . +....++.+.++ .+.|||++||.
T Consensus 67 ~~~~~D~ig~~g~~lna~ll~~~l~~~~~~~~~--------i~t~~~~~~~~-~-~~~~~~~~~~l~--~g~VvV~~G~~ 134 (247)
T PRK14557 67 DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVR--------VMTSIPFNAVA-E-PYIRLRAVHHLD--NGYIVIFGGGN 134 (247)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhCCcee--------EEecccccccc-c-hhhHHHHHHHHh--CCCEEEEECCc
Confidence 345668999999999999999999984 55443 33333332211 1 112244555676 77899999987
Q ss_pred ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEee-ccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhH
Q 020388 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI 189 (327)
Q Consensus 111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~t-DV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~ 189 (327)
+. +.++ +|++|+++|.+++|+.+++|| |||||||+||+.+|+|++|++++|.|+. ..+.++|+++|+
T Consensus 135 g~---~~~s------tD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~ 202 (247)
T PRK14557 135 GQ---PFVT------TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAAL 202 (247)
T ss_pred CC---CccC------hHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHH
Confidence 63 3333 499999999999999999995 9999999999999999999999999874 457789999999
Q ss_pred HHHHhCCCCEEEeecCCCC---------CCceEEeCC
Q 020388 190 IPVMRYDIPIVIRNIFNLS---------VPGIMICRP 217 (327)
Q Consensus 190 ~~a~~~~I~v~I~n~~~~e---------~~GT~I~~~ 217 (327)
++|.++|||++|.|+.+|+ ..||+|.+.
T Consensus 203 ~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~ 239 (247)
T PRK14557 203 LLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 239 (247)
T ss_pred HHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecC
Confidence 9999999999999987543 469999764
No 40
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.90 E-value=4.4e-23 Score=187.83 Aligned_cols=155 Identities=24% Similarity=0.278 Sum_probs=130.3
Q ss_pred HHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCC
Q 020388 36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD 115 (327)
Q Consensus 36 ~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~ 115 (327)
.|.+.+.|+++++.+++..|+++|+++.++++.++..+. ..++. +.++++++ .+.|||++||.|
T Consensus 67 ~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~------~~~~~----~~l~~~l~--~g~ipV~~g~~G---- 130 (231)
T cd04254 67 ADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVA------EPYIR----RRAIRHLE--KGRVVIFAGGTG---- 130 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhh------cccCH----HHHHHHHH--CCCEEEEECCcC----
Confidence 466777899999999999999999999999998862221 11344 78888888 789999998854
Q ss_pred CCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhC
Q 020388 116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY 195 (327)
Q Consensus 116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~ 195 (327)
...+ .+|++|+++|.+|+|+++++||||||||++||+.+|+++++++++++|+.+ .|++++|+.++++|.++
T Consensus 131 -~~~~----~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d~~a~~~a~~~ 202 (231)
T cd04254 131 -NPFF----TTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMDATAFTLCRDN 202 (231)
T ss_pred -CCCC----CcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHh---cchhhhHHHHHHHHHHC
Confidence 1111 259999999999999999999999999999999999999999999998866 47889999999999999
Q ss_pred CCCEEEeecCCCC---------CCceEE
Q 020388 196 DIPIVIRNIFNLS---------VPGIMI 214 (327)
Q Consensus 196 ~I~v~I~n~~~~e---------~~GT~I 214 (327)
|++++|.|+++|+ ..||+|
T Consensus 203 gi~~~I~~g~~~~~l~~~l~g~~~GT~i 230 (231)
T cd04254 203 NLPIVVFNINEPGNLLKAVKGEGVGTLI 230 (231)
T ss_pred CCeEEEEeCCCccHHHHHHCCCCCCEEe
Confidence 9999999987543 357776
No 41
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.90 E-value=1.1e-22 Score=196.21 Aligned_cols=194 Identities=16% Similarity=0.252 Sum_probs=150.1
Q ss_pred cccHHHHHHHHHHHHhhhcC----------------------C-CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEc
Q 020388 10 ELSYEFIRSTYNFLSNVDSG----------------------H-ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66 (327)
Q Consensus 10 ~~~~~~i~~~~~~l~~~~~~----------------------~-~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~ 66 (327)
.+..+++....+.+..+... . ..-..++.+.++||.++...+...|+++|+++.
T Consensus 23 ~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~a--- 99 (368)
T PRK13402 23 GCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAA--- 99 (368)
T ss_pred CcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCccccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEE---
Confidence 45667777776666655431 0 123567889999999999999999999999984
Q ss_pred ccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeee--ecCCcchHHHHHHHHHhCCceEEE
Q 020388 67 TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVTI 144 (327)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~--lgrggsD~~A~~lA~~l~A~~l~~ 144 (327)
+++++. +.+.+ .-.|...++.+..+++ .+.|||+.. ++.+++ ++||++|++|+++|.+++|+.+++
T Consensus 100 --qvLlT~-~d~~~-~~~y~n~~~~l~~LL~--~g~IPIine------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~Lii 167 (368)
T PRK13402 100 --QLLLTH-GDLRD-RERYINIRNTINVLLE--RGILPIINE------NDAVTTDRLKVGDNDNLSAMVAALADADTLII 167 (368)
T ss_pred --EEEEec-chhhh-HHHHHHHHHHHHHHHH--CCcEEEEeC------CCcEeecccccCChHHHHHHHHHHhCCCEEEE
Confidence 333333 22211 1123344577888887 889999863 233444 788999999999999999999999
Q ss_pred eeccCccccCCCCCCCCCeEEeecCH--HHHHHHH-----hcCCCcccH--hhHHHHHhCCCCEEEeecCCC--------
Q 020388 145 WTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMS-----YFGANVLHP--RTIIPVMRYDIPIVIRNIFNL-------- 207 (327)
Q Consensus 145 ~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~-----~~g~~v~~p--~a~~~a~~~~I~v~I~n~~~~-------- 207 (327)
||||||||++||+.+|++++|+++++ +|+.+++ ..|+++|+| .|+..|.++|++++|.++..|
T Consensus 168 lTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~ 247 (368)
T PRK13402 168 LSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLK 247 (368)
T ss_pred EecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhc
Confidence 99999999999999999999999997 6777776 467899999 589999999999999998765
Q ss_pred -CCCceEEeCCC
Q 020388 208 -SVPGIMICRPP 218 (327)
Q Consensus 208 -e~~GT~I~~~~ 218 (327)
+..||+|.+..
T Consensus 248 g~~~GT~i~~~~ 259 (368)
T PRK13402 248 GQNPGTYFTPEE 259 (368)
T ss_pred CCCCceEEecCC
Confidence 34699997653
No 42
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.89 E-value=1.8e-22 Score=184.03 Aligned_cols=155 Identities=22% Similarity=0.275 Sum_probs=129.9
Q ss_pred HHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCC
Q 020388 36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD 115 (327)
Q Consensus 36 ~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~ 115 (327)
.|.+.+.++++++++|+..|+++|+++.++++.++.. .... ...+.++++++ .+.|||++|+.+.
T Consensus 68 ~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~~-~~~~---------~~~~~i~~ll~--~g~VpV~~g~~g~--- 132 (233)
T TIGR02075 68 ADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQ-ICES---------YIRRKAIKHLE--KGKVVIFSGGTGN--- 132 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCCC-Cccc---------cCHHHHHHHHH--CCCEEEEECCCCC---
Confidence 5778888999999999999999999999999988651 1111 12367777887 7899999987542
Q ss_pred CCeeeecCCcchHHHHHHHHHhCCceEEEeec-cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHh
Q 020388 116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR 194 (327)
Q Consensus 116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tD-V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~ 194 (327)
.. ..+|++|+++|..|+|+.+++||| |||||++||+++|+++++++++++|+.++ |++++|+.++++|.+
T Consensus 133 ~~------~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~ 203 (233)
T TIGR02075 133 PF------FTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARD 203 (233)
T ss_pred CC------CCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHH
Confidence 11 235999999999999999999999 99999999999999999999999998764 778999999999999
Q ss_pred CCCCEEEeecCCCC---------CCceEE
Q 020388 195 YDIPIVIRNIFNLS---------VPGIMI 214 (327)
Q Consensus 195 ~~I~v~I~n~~~~e---------~~GT~I 214 (327)
+|++++|.|+.+|+ ..||.|
T Consensus 204 ~~i~v~i~~g~~~~~l~~~l~g~~~GT~i 232 (233)
T TIGR02075 204 NNLPIVVFNIDEPGALKKVILGKGIGTLV 232 (233)
T ss_pred CCCeEEEEeCCCcchHHHHHCCCCCCEEe
Confidence 99999999986543 457766
No 43
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.88 E-value=1.6e-21 Score=173.79 Aligned_cols=181 Identities=23% Similarity=0.280 Sum_probs=146.7
Q ss_pred ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388 11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (327)
Q Consensus 11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~ 68 (327)
...++++...+.|.++.+. ..+....|++=....+++|.+|...|.+.|++++.+++.
T Consensus 25 id~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai 104 (238)
T COG0528 25 IDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAI 104 (238)
T ss_pred CCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccc
Confidence 4667888888888887741 244566788888899999999999999999999999887
Q ss_pred ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeec-
Q 020388 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD- 147 (327)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tD- 147 (327)
.+..+. .+.+.+...++++ .+.|+|..| | +.+-.+|| |++|+++|..++||-++..|+
T Consensus 105 ~~~~~~----------e~~~~~~A~~~l~--~grVvIf~g--G-tg~P~fTT------Dt~AALrA~ei~ad~ll~atn~ 163 (238)
T COG0528 105 AMPQVA----------EPYSRREAIRHLE--KGRVVIFGG--G-TGNPGFTT------DTAAALRAEEIEADVLLKATNK 163 (238)
T ss_pred cCcccc----------CccCHHHHHHHHH--cCCEEEEeC--C-CCCCCCch------HHHHHHHHHHhCCcEEEEeccC
Confidence 764222 1233466777787 889999876 2 22333343 999999999999999999995
Q ss_pred cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (327)
Q Consensus 148 V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~ 215 (327)
|||||++||+++|+|+.+++|||.|+.++ +.++|+|.|+.+|++++||++++|.+.+ +..||.|.
T Consensus 164 VDGVY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~ 237 (238)
T COG0528 164 VDGVYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE 237 (238)
T ss_pred CCceeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence 99999999999999999999999998877 5899999999999999999999997644 24577663
No 44
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.87 E-value=1.7e-21 Score=177.69 Aligned_cols=181 Identities=19% Similarity=0.251 Sum_probs=143.9
Q ss_pred ccHHHHHHHHHHHHhhhc----------------C---C----CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcc
Q 020388 11 LSYEFIRSTYNFLSNVDS----------------G---H----ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDT 67 (327)
Q Consensus 11 ~~~~~i~~~~~~l~~~~~----------------~---~----~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~ 67 (327)
++.++++...+.+.++.+ + . ......|++=..+.+++|.++...|.+.|++++.+++
T Consensus 35 ~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa 114 (249)
T PRK14556 35 INVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSA 114 (249)
T ss_pred cCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeec
Confidence 445666666666666554 1 1 3344778888899999999999999999999999887
Q ss_pred cceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeec
Q 020388 68 REVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147 (327)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tD 147 (327)
..+.- + +.+ .+.+.+.++++ ++.|+|+.|+.| ++.++ +|++|+++|..++|+.+++|||
T Consensus 115 ~~~~~-----~----~e~-~~~~~~~~~l~--~g~vvi~~gg~G---~p~~S------tD~lAallA~~l~Ad~Lii~Td 173 (249)
T PRK14556 115 KGVDG-----L----LKV-ASAHEFNQELA--KGRVLIFAGGTG---NPFVT------TDTTASLRAVEIGADALLKATT 173 (249)
T ss_pred cccCc-----C----CCC-CCHHHHHHHHh--CCCEEEEECCCC---CCcCC------cHHHHHHHHHHcCCCEEEEEeC
Confidence 55421 1 111 14477778887 788999888654 34444 3999999999999999999999
Q ss_pred cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (327)
Q Consensus 148 V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~ 215 (327)
||||||+||+++|+|+++++++|.|+.+. +..+|++.|+++|+++|+|++|.|++.| +..||+|.
T Consensus 174 VDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~ 247 (249)
T PRK14556 174 VNGVYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT 247 (249)
T ss_pred CCccCCCCCCCCCCceEeeEEchhhhccc---chHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence 99999999999999999999999988653 5689999999999999999999998654 34688874
No 45
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.86 E-value=5.9e-21 Score=184.41 Aligned_cols=171 Identities=17% Similarity=0.260 Sum_probs=133.6
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEec-Cceec
Q 020388 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT-GFIAS 112 (327)
Q Consensus 34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~-Gfi~~ 112 (327)
..++.+.++|+.++..++...|.++|+++. +++++. +.+.+ ...+...+..+..+++ .+.|||++ ++..
T Consensus 66 ~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~a-----qillt~-~d~~~-~~~~lna~~~i~~Ll~--~g~iPVi~end~v- 135 (363)
T TIGR01027 66 AEKQALAAVGQVRLMQLYEQLFSQYGIKVA-----QILLTR-ADFSD-RERYLNARNTLEALLE--LGVVPIINENDTV- 135 (363)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHcCCeEE-----EEEEec-cchhh-HHHHHHHHHHHHHHHh--CCCEEEEeCCCce-
Confidence 366889999999999999999999999963 333333 22221 1122334467788887 78999996 3211
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH--HHHHHH-----hcCCCccc
Q 020388 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMS-----YFGANVLH 185 (327)
Q Consensus 113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~--ea~~l~-----~~g~~v~~ 185 (327)
..+.+++|++|++|+++|.+++|+.++|||||||||++||+.+|+|++|+++++. +..+++ .+|+++|+
T Consensus 136 ----~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~ 211 (363)
T TIGR01027 136 ----ATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMR 211 (363)
T ss_pred ----eeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCch
Confidence 1234678899999999999999999999999999999999999999999999864 455554 47889999
Q ss_pred Hh--hHHHHHhCCCCEEEeecCCCC---------CCceEEeCCC
Q 020388 186 PR--TIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP 218 (327)
Q Consensus 186 p~--a~~~a~~~~I~v~I~n~~~~e---------~~GT~I~~~~ 218 (327)
|| |+..|.++|++++|.++..|+ ..||+|.+..
T Consensus 212 ~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 255 (363)
T TIGR01027 212 TKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQA 255 (363)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCC
Confidence 98 899999999999999987542 4699997643
No 46
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.86 E-value=6.2e-21 Score=184.92 Aligned_cols=170 Identities=19% Similarity=0.267 Sum_probs=134.0
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (327)
Q Consensus 34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~ 113 (327)
..++.+++.||..+++++...|+++|+++..+ ++ +.+.+.. ...+......+..+++ .+.|||+++
T Consensus 74 ~~~qa~aavGq~~L~~~~~~~l~~~gi~~~qi-----l~-t~~d~~~-~~~~ln~~~~i~~Ll~--~g~IPVi~~----- 139 (372)
T PRK05429 74 AEKQAAAAVGQSRLMQAYEELFARYGITVAQI-----LL-TRDDLED-RERYLNARNTLRTLLE--LGVVPIINE----- 139 (372)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHCCCCEEEE-----Ee-ehhHhhh-hhHhhhHHHHHHHHHH--CCCEEEEcC-----
Confidence 46688999999999999999999999997553 22 2222211 1112233466788887 789999963
Q ss_pred CCCCe--eeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH--HHHHHHHh-----cCCCcc
Q 020388 114 PDNIP--TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVL 184 (327)
Q Consensus 114 ~~g~~--~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~~-----~g~~v~ 184 (327)
++.+ ..+++|++|++|+++|.+|+|+.++|||||||||++||+.+|++++|+++++ +|+.+++. +|+++|
T Consensus 140 -nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM 218 (372)
T PRK05429 140 -NDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGM 218 (372)
T ss_pred -CCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCc
Confidence 1221 1257789999999999999999999999999999999999999999999998 67888763 678899
Q ss_pred cH--hhHHHHHhCCCCEEEeecCCC---------CCCceEEeCCC
Q 020388 185 HP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRPP 218 (327)
Q Consensus 185 ~p--~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~~~ 218 (327)
+| .|+..|.++|++++|.|+..| +..||.|.+..
T Consensus 219 ~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 263 (372)
T PRK05429 219 ATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQE 263 (372)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCC
Confidence 99 588999999999999997654 34699998653
No 47
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.85 E-value=2.5e-20 Score=168.61 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=115.6
Q ss_pred hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (327)
Q Consensus 33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~ 112 (327)
+...|.+...++.+++.++...|. .|+++..+ +. +.+.++++ .+.|||++||++
T Consensus 60 ~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~------------------~~----~~~~~~l~--~g~vpv~~G~~~- 113 (221)
T cd04253 60 EAFLDEIGIMATRLNARLLIAALG-DAYPPVPT------------------SY----EEALEAMF--TGKIVVMGGTEP- 113 (221)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCC------------------CH----HHHHHHHH--cCCeEEEECCCC-
Confidence 345677778889999999888877 77765432 12 45566776 789999999964
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc-----CC-CcccH
Q 020388 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-----GA-NVLHP 186 (327)
Q Consensus 113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~-----g~-~v~~p 186 (327)
+ .+ +|++|+++|..|+|+.+++||||||||++||+.+|+++++++++++|+.+++.. |+ .++++
T Consensus 114 ---~-~s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~ 183 (221)
T cd04253 114 ---G-QS------TDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDP 183 (221)
T ss_pred ---C-Cc------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHH
Confidence 2 22 399999999999999999999999999999999999999999999999999865 44 57899
Q ss_pred hhHHHHHhCCCCEEEeecCCC
Q 020388 187 RTIIPVMRYDIPIVIRNIFNL 207 (327)
Q Consensus 187 ~a~~~a~~~~I~v~I~n~~~~ 207 (327)
.+++++.++|++++|.|+..|
T Consensus 184 ~a~~~~~~~gi~~~I~~g~~p 204 (221)
T cd04253 184 LAAKIIERSGIKTIVVDGRDP 204 (221)
T ss_pred HHHHHHHHCCCeEEEECCCCc
Confidence 999999999999999988654
No 48
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.84 E-value=4.6e-20 Score=169.91 Aligned_cols=145 Identities=15% Similarity=0.187 Sum_probs=120.9
Q ss_pred HHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchH
Q 020388 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDF 128 (327)
Q Consensus 49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~ 128 (327)
..+.++|.++|+++.++++.+++.+..+.. ..++. +.++++++ .+.|||++|+++.+.+|.+.++ ++|+
T Consensus 83 ~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~--~~~~~----~~l~~ll~--~g~iPVi~~~~~~~~~~~~~~~---~~D~ 151 (252)
T cd04241 83 SIVVDALLEAGVPAVSVPPSSFFVTENGRI--VSFDL----EVIKELLD--RGFVPVLHGDVVLDEGGGITIL---SGDD 151 (252)
T ss_pred HHHHHHHHHCCCCeEEEChHHeEEecCCee--eeecH----HHHHHHHh--CCCEEEEcCCeEecCCCCeEEe---ChHH
Confidence 467899999999999999999866542211 23444 78888888 8999999999888888877665 3799
Q ss_pred HHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh-------cCCCcccHh--hHHHHHhCCCCE
Q 020388 129 SAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-------FGANVLHPR--TIIPVMRYDIPI 199 (327)
Q Consensus 129 ~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~-------~g~~v~~p~--a~~~a~~~~I~v 199 (327)
+|+.+|.+|+|+++++||||||||++|| |+++++++++++++.++.. ...++|.+| ++..|.++|+++
T Consensus 152 ~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v 228 (252)
T cd04241 152 IVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEV 228 (252)
T ss_pred HHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999999999999999 8899999999988888765 245789986 777777899999
Q ss_pred EEeecCCC
Q 020388 200 VIRNIFNL 207 (327)
Q Consensus 200 ~I~n~~~~ 207 (327)
+|.++..|
T Consensus 229 ~I~~g~~~ 236 (252)
T cd04241 229 YIFNGDKP 236 (252)
T ss_pred EEEeCCCH
Confidence 99988654
No 49
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.83 E-value=8.2e-20 Score=165.19 Aligned_cols=141 Identities=23% Similarity=0.248 Sum_probs=114.8
Q ss_pred hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (327)
Q Consensus 33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~ 112 (327)
+...|.+...+++++++++...|...++++...+ . ....+.+. .+.+||++||++
T Consensus 59 ~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~------------------~----~~~~~~l~--~g~ipv~~G~~~- 113 (221)
T TIGR02076 59 ETFLDEIGIDATRLNAMLLIAALGDDAYPKVPEN------------------F----EEALEAMS--LGKIVVMGGTHP- 113 (221)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCC------------------H----HHHHHHHH--cCCEEEEcCCCC-
Confidence 4456777888999999999988887787764321 1 22244555 678999999862
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh---cCCC---cccH
Q 020388 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FGAN---VLHP 186 (327)
Q Consensus 113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~---~g~~---v~~p 186 (327)
| .+ +|++|+++|.+|+|+.+++||||||||++||+++|++++|++++++|+.+++. +|.+ .+++
T Consensus 114 ---~-~s------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~ 183 (221)
T TIGR02076 114 ---G-HT------TDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDP 183 (221)
T ss_pred ---C-CC------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHH
Confidence 2 22 49999999999999999999999999999999999999999999999999876 3333 5788
Q ss_pred hhHHHHHhCCCCEEEeecCCCC
Q 020388 187 RTIIPVMRYDIPIVIRNIFNLS 208 (327)
Q Consensus 187 ~a~~~a~~~~I~v~I~n~~~~e 208 (327)
.|++.+.+.+++++|.++..|+
T Consensus 184 ~a~~~~~~~~i~v~I~~g~~~~ 205 (221)
T TIGR02076 184 LAAKIIERSKIRTIVVNGRDPE 205 (221)
T ss_pred HHHHHHHHCCCcEEEECCCCcc
Confidence 9999999999999999987553
No 50
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.83 E-value=2.5e-19 Score=167.91 Aligned_cols=194 Identities=15% Similarity=0.247 Sum_probs=155.0
Q ss_pred cccHHHHHHHHHHHHhhhcC------------------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEE
Q 020388 10 ELSYEFIRSTYNFLSNVDSG------------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWM 65 (327)
Q Consensus 10 ~~~~~~i~~~~~~l~~~~~~------------------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l 65 (327)
++...++..+...+..+.+. +..=..++.+.+.|+......+...|..+|+++
T Consensus 24 ~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v--- 100 (369)
T COG0263 24 GLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV--- 100 (369)
T ss_pred CcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee---
Confidence 45567777887777777651 223378889999999999999999999999987
Q ss_pred cccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeee--ecCCcchHHHHHHHHHhCCceEE
Q 020388 66 DTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVT 143 (327)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~--lgrggsD~~A~~lA~~l~A~~l~ 143 (327)
.+++++.++ +.+ ...|...+..+..+++ .|.|||+ |||+-+.+ +-+|++|.+++.+|...+||.|+
T Consensus 101 --~QiLLTr~D-~~~-r~ry~Nar~Tl~~Ll~--~gvVPII------NENDtva~~EikfGDND~LsA~VA~lv~ADlLv 168 (369)
T COG0263 101 --GQILLTRDD-FSD-RRRYLNARNTLSALLE--LGVVPII------NENDTVATEEIKFGDNDTLSALVAILVGADLLV 168 (369)
T ss_pred --eEEEeehhh-hhh-HHHHHHHHHHHHHHHH--CCceeee------cCCCceeeeeeeecCCchHHHHHHHHhCCCEEE
Confidence 566665432 211 1245566777888888 8999998 56666544 56788999999999999999999
Q ss_pred EeeccCccccCCCCCCCCCeEEeecCH--HHHHHHHh-----cCCCcccHh--hHHHHHhCCCCEEEeecCCCC------
Q 020388 144 IWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHPR--TIIPVMRYDIPIVIRNIFNLS------ 208 (327)
Q Consensus 144 ~~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~~-----~g~~v~~p~--a~~~a~~~~I~v~I~n~~~~e------ 208 (327)
++||+||+||+||+.+|+|++|++++- .|...++. +|+++|..| |++.|.++|++++|.++.+|.
T Consensus 169 lLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~ 248 (369)
T COG0263 169 LLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDAL 248 (369)
T ss_pred EEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHH
Confidence 999999999999999999999999863 36666664 778999996 999999999999999998653
Q ss_pred ---CCceEEeCCC
Q 020388 209 ---VPGIMICRPP 218 (327)
Q Consensus 209 ---~~GT~I~~~~ 218 (327)
..||++.+..
T Consensus 249 ~~~~~GT~F~~~~ 261 (369)
T COG0263 249 EGEAVGTLFEPQA 261 (369)
T ss_pred hCCCCccEEecCC
Confidence 4699998553
No 51
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.83 E-value=1e-19 Score=169.27 Aligned_cols=169 Identities=14% Similarity=0.199 Sum_probs=133.7
Q ss_pred hhHHHH-hhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC------------------CC-CC-CCCCchHHHHH
Q 020388 33 ESFTDF-VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT------------------SS-NQ-VDPDFSESEKR 91 (327)
Q Consensus 33 ~~~~d~-v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~------------------~~-~~-~~~~~~~~~~~ 91 (327)
++..+. ..++| .++..++ +.|+++|++++++++.++.+++.. .+ |+ ..++. +.
T Consensus 68 ~~~l~~~~~a~~-~ln~~lv-~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~----~~ 141 (268)
T PRK14058 68 RETLEVFIMAMA-LINKQLV-ERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNT----DL 141 (268)
T ss_pred HHHHHHHHHHHH-HHHHHHH-HHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECH----HH
Confidence 344444 45788 7777775 599999999999999987554211 11 11 23455 78
Q ss_pred HHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH
Q 020388 92 LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ 171 (327)
Q Consensus 92 i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ 171 (327)
++.+++ .+.|||++|+ +.+..|+.+++ ++|++|+.+|.+|+|++++|||||||||++||. +++++++++++
T Consensus 142 i~~ll~--~g~iPVi~~~-~~~~~g~~~~i---~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~ 212 (268)
T PRK14058 142 LKLLLK--AGYLPVVAPP-ALSEEGEPLNV---DGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPE 212 (268)
T ss_pred HHHHHH--CCCEEEEeCc-eECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHH
Confidence 888998 8899999997 66677887765 589999999999999999999999999999984 47899999999
Q ss_pred HHHHHHhcCCCcccHh--hHHHHHhCCC-CEEEeecCCCC-------CCceEEeC
Q 020388 172 EAWEMSYFGANVLHPR--TIIPVMRYDI-PIVIRNIFNLS-------VPGIMICR 216 (327)
Q Consensus 172 ea~~l~~~g~~v~~p~--a~~~a~~~~I-~v~I~n~~~~e-------~~GT~I~~ 216 (327)
|+.++.....++|.|| ++..+.++|+ +++|.++..|+ ..||+|.+
T Consensus 213 e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~ 267 (268)
T PRK14058 213 EAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN 267 (268)
T ss_pred HHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence 9999988788999996 6777778899 78998886553 24888853
No 52
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.81 E-value=2.2e-19 Score=167.91 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=123.0
Q ss_pred cHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCC---------------CCCCchHHHHHHHHHhhcCCCceEEec
Q 020388 43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ---------------VDPDFSESEKRLEKWFSQSPSNTIIAT 107 (327)
Q Consensus 43 GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~i~~~l~~~~~~vpVv~ 107 (327)
|+ ++..+ ++.|++.|++++++++.+..++++++++. ..++. +.++.+++ .+.|||++
T Consensus 93 g~-ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~----~~i~~ll~--~g~IPVi~ 164 (279)
T cd04250 93 GK-VNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNP----ELLETLLE--AGYIPVIA 164 (279)
T ss_pred Cc-hHHHH-HHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcH----HHHHHHHH--CCCeEEEc
Confidence 74 56655 99999999999999999876665444331 12334 78888888 78999999
Q ss_pred CceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc--CCCccc
Q 020388 108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLH 185 (327)
Q Consensus 108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~--g~~v~~ 185 (327)
| ++.++.|++++++ +|.+|+.+|.+|+|+++++||||||||++||. .++++++++++|+.+++.. ..++|.
T Consensus 165 ~-~~~~~~g~~~~~~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~ 237 (279)
T cd04250 165 P-VGVGEDGETYNIN---ADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMI 237 (279)
T ss_pred C-CccCCCCcEEEeC---HHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchH
Confidence 9 5888888888774 89999999999999999999999999999984 3789999999999999853 468898
Q ss_pred Hh--hHHHHHhCCCC-EEEeecCCCC
Q 020388 186 PR--TIIPVMRYDIP-IVIRNIFNLS 208 (327)
Q Consensus 186 p~--a~~~a~~~~I~-v~I~n~~~~e 208 (327)
++ ++..+.+.|++ ++|.++..|+
T Consensus 238 ~Kl~~a~~a~~~g~~~v~I~~g~~~~ 263 (279)
T cd04250 238 PKVEACIEALEGGVKAAHIIDGRVPH 263 (279)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 85 66667778886 9998876553
No 53
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.80 E-value=4e-19 Score=161.67 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=114.6
Q ss_pred cHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC-----C----CCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388 43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-----Q----VDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (327)
Q Consensus 43 GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~-----~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~ 113 (327)
++.++..+ .+.|+++|++++++++.+..+++..+++ + ..++. +.++++++ .+.|||++|+ +.+
T Consensus 75 ~g~~~~~i-~~~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~----~~i~~~l~--~g~IPVi~~~-~~~ 146 (231)
T TIGR00761 75 IGQVNKEL-VALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNK----ALLEALLK--AGYIPVISSL-ALT 146 (231)
T ss_pred hcchHHHH-HHHHHhCCCCcccccCCCCCEEEEEECCCccCCcccceEEEcH----HHHHHHHH--CCCeEEECCC-ccC
Confidence 44566555 5699999999999999987454432221 1 22344 78888998 7899999995 888
Q ss_pred CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccHh--hH
Q 020388 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TI 189 (327)
Q Consensus 114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p~--a~ 189 (327)
..|++++++ +|++|+.+|.+|+|++++|||||||||++||+ +++++++++|+.+++..| .++|.|| ++
T Consensus 147 ~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a 218 (231)
T TIGR00761 147 AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAA 218 (231)
T ss_pred CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHH
Confidence 889998884 89999999999999999999999999999874 699999999999999876 6889996 67
Q ss_pred HHHHhCCCCE
Q 020388 190 IPVMRYDIPI 199 (327)
Q Consensus 190 ~~a~~~~I~v 199 (327)
..|.++|++-
T Consensus 219 ~~a~~~gv~~ 228 (231)
T TIGR00761 219 LEALRGGVKS 228 (231)
T ss_pred HHHHHcCCCE
Confidence 7777788874
No 54
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.79 E-value=1.3e-18 Score=162.97 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=126.0
Q ss_pred HhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCC---------CC-CCCCchHHHHHHHHHhhcCCCceEEec
Q 020388 38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS---------NQ-VDPDFSESEKRLEKWFSQSPSNTIIAT 107 (327)
Q Consensus 38 ~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~---------~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~ 107 (327)
.+++ | .++. .+.+.|+++|+++.++++.+..++++.++ |. ..++. +.++.+++ .|.|||++
T Consensus 98 ~a~~-G-~l~~-~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~----~~l~~ll~--~g~vpVv~ 168 (283)
T PRK00942 98 MVLA-G-KVNK-ELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNP----ALLEALLE--AGYIPVIS 168 (283)
T ss_pred HHHc-C-chHH-HHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECH----HHHHHHHH--CCCEEEEc
Confidence 3344 7 4554 45699999999999999998766665333 11 22344 78888888 88999999
Q ss_pred CceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCccc
Q 020388 108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLH 185 (327)
Q Consensus 108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~ 185 (327)
+ ++.+++|++++++ +|++|+.+|.+|+|++++|||||||||++ +++++++++++|+.+++..+ .++|.
T Consensus 169 ~-~~~~~~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~ 238 (283)
T PRK00942 169 P-IGVGEDGETYNIN---ADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMI 238 (283)
T ss_pred C-cEECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchH
Confidence 7 5889889988874 89999999999999999999999999986 37899999999999998764 47888
Q ss_pred Hh--hHHHHHhCCC-CEEEeecCCC----------CCCceEEeC
Q 020388 186 PR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICR 216 (327)
Q Consensus 186 p~--a~~~a~~~~I-~v~I~n~~~~----------e~~GT~I~~ 216 (327)
|+ ++..+.++|+ +++|.++..| +..||.|.+
T Consensus 239 ~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 282 (283)
T PRK00942 239 PKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence 85 5666667887 5999886543 346888864
No 55
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.79 E-value=9.7e-19 Score=161.22 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=121.0
Q ss_pred hHHHHhhh-hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC-------C-CCCCchHHHHHHHHHhhcCCCceE
Q 020388 34 SFTDFVVG-HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------Q-VDPDFSESEKRLEKWFSQSPSNTI 104 (327)
Q Consensus 34 ~~~d~v~s-~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~-------~-~~~~~~~~~~~i~~~l~~~~~~vp 104 (327)
...+.+.. .++.++..+++..+ ++|++++++++.+..+++..+++ + ..++. +.++.+++ .+.||
T Consensus 67 ~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~----~~l~~ll~--~g~ip 139 (252)
T cd04249 67 EQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDP----SLLNDLLK--AGFLP 139 (252)
T ss_pred HHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEcH----HHHHHHHH--CCCEE
Confidence 34444433 36677777766665 89999999999987666543332 1 23444 78888888 88999
Q ss_pred EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CC
Q 020388 105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--AN 182 (327)
Q Consensus 105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~ 182 (327)
|++| ++.++.|++++++ +|++|+.+|.+|+|+ +++||||||||+.|| +++++++++|+.++...| .+
T Consensus 140 Vi~~-~g~~~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~g 208 (252)
T cd04249 140 IISS-IGADDQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITD 208 (252)
T ss_pred EECC-CEECCCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcC
Confidence 9998 4889899998885 799999999999999 689999999998765 688999999999998655 36
Q ss_pred cccHh---hHHHHHhCCCCEEEeecCCC
Q 020388 183 VLHPR---TIIPVMRYDIPIVIRNIFNL 207 (327)
Q Consensus 183 v~~p~---a~~~a~~~~I~v~I~n~~~~ 207 (327)
+|.++ |++.+.+.+++++|.++..|
T Consensus 209 Gm~~kl~~a~~~~~~~~~~v~I~~g~~~ 236 (252)
T cd04249 209 GMIVKVNAALDAAQSLRRGIDIASWQYP 236 (252)
T ss_pred CcHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 67664 66677777789999987654
No 56
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.79 E-value=5.5e-18 Score=156.83 Aligned_cols=170 Identities=18% Similarity=0.211 Sum_probs=128.2
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (327)
Q Consensus 34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~ 113 (327)
..++.+.++|+.....++...|.++|+++.. +.++.. .+. ....+....+.++++++ .+.|||++|.-. .
T Consensus 70 ~~~qa~aaiGq~~L~~~y~~~f~~~~~~~aq-----iLlt~~-d~~-~~~~~~n~~~~l~~lL~--~g~VPIinend~-~ 139 (264)
T PTZ00489 70 PNKQALASMGQPLLMHMYYTELQKHGILCAQ-----MLLAAY-DLD-SRKRTINAHNTIEVLIS--HKVIPIINENDA-T 139 (264)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhCCCeEEE-----eeeecc-ccc-cchhhHHHHHHHHHHHH--CCCEEEECCCCC-c
Confidence 3567788899988899999999999998743 333222 111 12234556788899998 899999988411 1
Q ss_pred CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE---EeecCHHHHHHHH----hcCCCcccH
Q 020388 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI---LRTLSYQEAWEMS----YFGANVLHP 186 (327)
Q Consensus 114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~---i~~is~~ea~~l~----~~g~~v~~p 186 (327)
..++.. +|++|.+|+++|..++|+.++++|||||||++||+.+|+|++ ++++++++..... ..|.++|.+
T Consensus 140 ~~~e~~---~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~ 216 (264)
T PTZ00489 140 ALHELV---FGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVT 216 (264)
T ss_pred ccceeE---eCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHH
Confidence 112322 357899999999999999999999999999999999999997 7788887664332 256789988
Q ss_pred h--hHHHHHhCCCCEEEeecCCCC-----------CCceEEeC
Q 020388 187 R--TIIPVMRYDIPIVIRNIFNLS-----------VPGIMICR 216 (327)
Q Consensus 187 ~--a~~~a~~~~I~v~I~n~~~~e-----------~~GT~I~~ 216 (327)
| |+..|.++|++++|.++..|+ ..||+|.+
T Consensus 217 Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~ 259 (264)
T PTZ00489 217 KLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYP 259 (264)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEee
Confidence 5 889999999999999875432 25888864
No 57
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.77 E-value=2.7e-18 Score=158.59 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCC----------CC-CCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388 43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS----------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (327)
Q Consensus 43 GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~----------~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~ 111 (327)
| +++..+ ++.|+++|++++++++.+..++++.++ |. ..++. +.++.+++ .+.|||++| ++
T Consensus 77 g-~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~----~~l~~ll~--~g~ipVv~~-~~ 147 (256)
T cd04238 77 G-KVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNP----ELLETLLE--AGYIPVIAP-IA 147 (256)
T ss_pred C-chHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECH----HHHHHHHH--CCCEEEECC-cE
Confidence 7 555555 999999999999999999766654332 22 23445 78888888 889999999 58
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh--cCCCcccHh--
Q 020388 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--FGANVLHPR-- 187 (327)
Q Consensus 112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~--~g~~v~~p~-- 187 (327)
.++.|++++++ +|++|+++|.+|+|++++|||||+|||++ +++++++++++|+.++.. ...++|.|+
T Consensus 148 ~~~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~ 218 (256)
T cd04238 148 VDEDGETYNVN---ADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVE 218 (256)
T ss_pred ECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHH
Confidence 88889988874 89999999999999999999999999987 268999999999999875 335788885
Q ss_pred hHHHHHhCCC-CEEEeecCCC
Q 020388 188 TIIPVMRYDI-PIVIRNIFNL 207 (327)
Q Consensus 188 a~~~a~~~~I-~v~I~n~~~~ 207 (327)
++..+.+.|+ +++|.++..|
T Consensus 219 ~a~~~~~~g~~~v~I~~g~~~ 239 (256)
T cd04238 219 AALEALEGGVRKVHIIDGRVP 239 (256)
T ss_pred HHHHHHHhCCCEEEEeCCCCC
Confidence 5566666776 5999987644
No 58
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.77 E-value=7.6e-18 Score=157.66 Aligned_cols=170 Identities=17% Similarity=0.196 Sum_probs=128.3
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecC-ceec
Q 020388 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIAS 112 (327)
Q Consensus 34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~G-fi~~ 112 (327)
..+..+.+.|+.....++...|.++|+++ .+++++. +.+.+.. .+....+.++.+++ .+.|||++| +...
T Consensus 92 ~~~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~llt~-~d~~~~~-~~~~~~~~l~~lL~--~g~iPVi~~nD~v~ 162 (284)
T cd04256 92 LDGRACAAVGQSGLMALYEAMFTQYGITV-----AQVLVTK-PDFYDEQ-TRRNLNGTLEELLR--LNIIPIINTNDAVS 162 (284)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCCcH-----HHeeeec-cccccHH-HHHHHHHHHHHHHH--CCCEEEEeCCCccc
Confidence 45678999999999999999999999876 6665543 3343211 12244567788887 889999996 3222
Q ss_pred C-----CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh-----cCCC
Q 020388 113 T-----PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGAN 182 (327)
Q Consensus 113 ~-----~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~-----~g~~ 182 (327)
+ ++|+.. ...+++|++|+++|..++|+.++++|||||||++||+ .|+++++++++..+..++.. .|.+
T Consensus 163 ~~~~~~~~~~~~-~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtG 240 (284)
T cd04256 163 PPPEPDEDLQGV-ISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTG 240 (284)
T ss_pred cccccccccccc-ccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccC
Confidence 2 112221 1235789999999999999999999999999999997 68999999999877766532 4578
Q ss_pred cccHh--hHHHHHhCCCCEEEeecCCC---------CCCceEE
Q 020388 183 VLHPR--TIIPVMRYDIPIVIRNIFNL---------SVPGIMI 214 (327)
Q Consensus 183 v~~p~--a~~~a~~~~I~v~I~n~~~~---------e~~GT~I 214 (327)
+|.|| |+..|.++|++++|.++..| +..||+|
T Consensus 241 GM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~ 283 (284)
T cd04256 241 GMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF 283 (284)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence 99995 88889999999999987654 3457776
No 59
>PLN02512 acetylglutamate kinase
Probab=99.76 E-value=1.5e-17 Score=157.63 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=122.6
Q ss_pred HHHHHHHHHHcCCceeEEcccceeeccCCCCC---------C-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCC
Q 020388 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN---------Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI 117 (327)
Q Consensus 48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~---------~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~ 117 (327)
...+++.|+++|++++++++.+..+++..+++ + ..++. +.++.+++ .+.|||++|+ +.++.|+
T Consensus 129 n~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~----~~i~~lL~--~g~IPVi~~~-~~d~~g~ 201 (309)
T PLN02512 129 NKSLVSLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDP----TVLRPLVD--DGHIPVIATV-AADEDGQ 201 (309)
T ss_pred HHHHHHHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCH----HHHHHHHh--CCCEEEEeCc-eECCCCC
Confidence 55678999999999999999886444433221 1 23455 78888888 8899999996 8888888
Q ss_pred eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc--CCCcccHh--hHHHHH
Q 020388 118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLHPR--TIIPVM 193 (327)
Q Consensus 118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~--g~~v~~p~--a~~~a~ 193 (327)
..++ ++|.+|+.+|.+|+|++++|||||||||++|| ++++++++++++|+.++... ..++|.|| ++..+.
T Consensus 202 ~~~i---~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~ 275 (309)
T PLN02512 202 AYNI---NADTAAGEIAAALGAEKLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSL 275 (309)
T ss_pred Eecc---CHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 8776 48999999999999999999999999999864 34789999999999998754 36889996 555666
Q ss_pred hCCCC-EEEeecCCC----------CCCceEEe
Q 020388 194 RYDIP-IVIRNIFNL----------SVPGIMIC 215 (327)
Q Consensus 194 ~~~I~-v~I~n~~~~----------e~~GT~I~ 215 (327)
+.|++ ++|.++..| +..||.|.
T Consensus 276 ~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~ 308 (309)
T PLN02512 276 AQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT 308 (309)
T ss_pred HcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence 78996 888886543 23477774
No 60
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.75 E-value=1.6e-17 Score=155.64 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=125.4
Q ss_pred hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCC-----CC---C-CCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----SN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~-----~~---~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~ 112 (327)
.|+. ...+.+.|++.|++++++++.+..+++..+ ++ . ..++. +.++.+++ .+.|||++|+ +.
T Consensus 101 ~g~l--n~~lv~~L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~----~~i~~ll~--~g~iPVi~~~-~~ 171 (284)
T CHL00202 101 AGKV--NKDLVGSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDP----QLIDMLLE--KNYIPVIASV-AA 171 (284)
T ss_pred hhHH--HHHHHHHHHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCH----HHHHHHHH--CCCEEEECCC-cc
Confidence 3665 777899999999999999999876554221 12 1 24555 88898998 8899999995 88
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccHh--h
Q 020388 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--T 188 (327)
Q Consensus 113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p~--a 188 (327)
+..|++++++ +|++|+.+|.+|+|++++|||||||||+.+ . .| .+++++++++|+.++...| .++|.|| +
T Consensus 172 ~~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~-~-d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~a 245 (284)
T CHL00202 172 DHDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGILADI-N-DP-NSLISTLNIKEARNLASTGIISGGMIPKVNC 245 (284)
T ss_pred CCCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhhcCCC-C-CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHH
Confidence 8889888774 799999999999999999999999999842 1 12 2799999999999998764 5789996 6
Q ss_pred HHHHHhCCCC-EEEeecCCCC----------CCceEEe
Q 020388 189 IIPVMRYDIP-IVIRNIFNLS----------VPGIMIC 215 (327)
Q Consensus 189 ~~~a~~~~I~-v~I~n~~~~e----------~~GT~I~ 215 (327)
+..|.++|++ ++|.++..|. ..||.|.
T Consensus 246 a~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 246 CIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 6677788987 7888876543 3588774
No 61
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.75 E-value=1.1e-17 Score=154.77 Aligned_cols=158 Identities=14% Similarity=0.184 Sum_probs=123.2
Q ss_pred hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCC-------------------CC-CCCCchHHHHHH
Q 020388 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS-------------------NQ-VDPDFSESEKRL 92 (327)
Q Consensus 33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~-------------------~~-~~~~~~~~~~~i 92 (327)
++..+.+....+.++..+ .+.|+++|++++++++.+..+++.+.. |. ..++. +.+
T Consensus 64 ~~~l~~~~~a~~~ln~~i-v~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~----~~i 138 (257)
T cd04251 64 KETLEVFVMVMGLINKKI-VARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNS----DLI 138 (257)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcH----HHH
Confidence 444455554447777775 559999999999999988654432111 11 23444 888
Q ss_pred HHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHH
Q 020388 93 EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE 172 (327)
Q Consensus 93 ~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~e 172 (327)
+.+++ .+.|||++++ +.+.+|+++++ ++|++|+.+|.+|+|++++|||||||||++ ++++++++++|
T Consensus 139 ~~ll~--~g~vpVi~~~-~~~~~G~~~~i---~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e 205 (257)
T cd04251 139 EALLD--AGYLPVVSPV-AYSEEGEPLNV---DGDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSD 205 (257)
T ss_pred HHHHh--CCCeEEEeCc-EECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHH
Confidence 98998 8899999986 66788888887 489999999999999999999999999963 68999999999
Q ss_pred HHHHHhcCCCcccHh--hHHHHHhCCCC-EEEeecCCCC
Q 020388 173 AWEMSYFGANVLHPR--TIIPVMRYDIP-IVIRNIFNLS 208 (327)
Q Consensus 173 a~~l~~~g~~v~~p~--a~~~a~~~~I~-v~I~n~~~~e 208 (327)
+.++...-.++|.|| ++..+.++|++ ++|.++..|+
T Consensus 206 ~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~ 244 (257)
T cd04251 206 AESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADS 244 (257)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence 999986667889885 77777788884 7888776553
No 62
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.75 E-value=1.4e-17 Score=173.42 Aligned_cols=169 Identities=14% Similarity=0.191 Sum_probs=126.1
Q ss_pred HHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC-CC
Q 020388 37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST-PD 115 (327)
Q Consensus 37 d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~-~~ 115 (327)
..++|+||.+++.++..+|+++|+++ .++++ +++.+++... +....+.|+.+++ .+.|||++|.-..+ ..
T Consensus 94 qa~aa~Gq~~l~~~~~~~f~~~g~~~-----~qill-T~~~~~~~~~-~~~~~~~l~~ll~--~g~iPVv~~nd~v~~~~ 164 (718)
T PLN02418 94 KACAAVGQSELMALYDTLFSQLDVTA-----SQLLV-TDSDFRDPDF-RKQLSETVESLLD--LRVIPIFNENDAVSTRR 164 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCeE-----EEEEe-cHhHhcchhH-hHhHHHHHHHHHH--CCCEEEEcCCCCccccc
Confidence 38899999999999999999999954 55544 4344432221 2345577888887 78999998742222 11
Q ss_pred CC----eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH-HH-----hcCCCccc
Q 020388 116 NI----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MS-----YFGANVLH 185 (327)
Q Consensus 116 g~----~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~-l~-----~~g~~v~~ 185 (327)
+. ... .+++|++|+++|.+++|+.+++||||||||++||+ .++++++++++..+... +. ..++++|.
T Consensus 165 ~~~~~~~~~--~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~ 241 (718)
T PLN02418 165 APYEDSSGI--FWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMT 241 (718)
T ss_pred cccccccCe--ecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcH
Confidence 10 011 24689999999999999999999999999999998 58999999997654332 22 23578999
Q ss_pred Hh--hHHHHHhCCCCEEEeecCCC---------CCCceEEeCC
Q 020388 186 PR--TIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP 217 (327)
Q Consensus 186 p~--a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~~ 217 (327)
|| |+..|.++|++++|.++..| +..||+|.+.
T Consensus 242 ~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 284 (718)
T PLN02418 242 AKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQD 284 (718)
T ss_pred HHHHHHHHHHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 94 88899999999999997644 3469999653
No 63
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.73 E-value=1.8e-16 Score=146.77 Aligned_cols=186 Identities=15% Similarity=0.192 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEc------ccc-eeeccC--CCCCCCC-
Q 020388 13 YEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD------TRE-VLIVNP--TSSNQVD- 82 (327)
Q Consensus 13 ~~~i~~~~~~l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~------~~~-~~~~~~--~~~~~~~- 82 (327)
.+.++...+.|.++.++ .+.++.+|.-..++....+....|++....+ ... .++..+ ..++...
T Consensus 47 ~~~i~~la~~i~~~~~~------~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i 120 (262)
T cd04255 47 AEAVLPLVEEIVALRPE------HKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSKV 120 (262)
T ss_pred HHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 46788888888877541 2445555554445432233334555443332 111 001100 0112111
Q ss_pred --CCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc------chHHHHHHHHHhCCceEEEeeccCccccC
Q 020388 83 --PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG------SDFSAAIMGALLRAHQVTIWTDVDGVYSA 154 (327)
Q Consensus 83 --~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg------sD~~A~~lA~~l~A~~l~~~tDV~Gi~t~ 154 (327)
.+. ..++++++ .+.|||++|+.+.+ ..++.+|+| +|++|+++|.+|+|+.+++||||||||++
T Consensus 121 ~~~~~----~~l~~lL~--~g~vPVi~g~~~~~---~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~ 191 (262)
T cd04255 121 GHGDL----LQLPTFLK--AGRAPVISGMPPYG---LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTA 191 (262)
T ss_pred ccccH----HHHHHHHH--CCCeEEEeCCcCCC---eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECC
Confidence 223 56888888 89999999986533 223444444 89999999999999999999999999999
Q ss_pred CCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhC--CCCEEEeecCCCC---------CCceEE
Q 020388 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY--DIPIVIRNIFNLS---------VPGIMI 214 (327)
Q Consensus 155 dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~--~I~v~I~n~~~~e---------~~GT~I 214 (327)
||+.+|+++++++++++|+.++.. +..+|...+...++.+ .++++|.++..|+ ..||+|
T Consensus 192 dP~~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i 261 (262)
T cd04255 192 DPKKNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII 261 (262)
T ss_pred CCCCCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEe
Confidence 999999999999999998877752 3335666666665533 3699999986553 357776
No 64
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.65 E-value=1.3e-15 Score=136.24 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=115.9
Q ss_pred HHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (327)
Q Consensus 48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD 127 (327)
+..++..|.+.|+++++..|..+. +.+++. .+ ..-+.++.+++ .+.|||++|++..+.++.+..++ | |
T Consensus 83 ~~~V~~~l~~~Gv~av~~~P~s~~-~~~gr~-----~~-~~l~~i~~~l~--~gfvPvl~GDVv~d~~~g~~IiS-G--D 150 (252)
T COG1608 83 NSIVVDALLDAGVRAVSVVPISFS-TFNGRI-----LY-TYLEAIKDALE--KGFVPVLYGDVVPDDDNGYEIIS-G--D 150 (252)
T ss_pred HHHHHHHHHhcCCccccccCccee-ecCCce-----ee-chHHHHHHHHH--cCCEeeeecceEEcCCCceEEEe-c--c
Confidence 446689999999999998888886 333332 22 11277888888 89999999999998764444443 3 9
Q ss_pred HHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC----CCcccHh--hHHHHHhCCCCEEE
Q 020388 128 FSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG----ANVLHPR--TIIPVMRYDIPIVI 201 (327)
Q Consensus 128 ~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g----~~v~~p~--a~~~a~~~~I~v~I 201 (327)
..+.+||+.|++++++|+|||||||+.||.++|+++.++++....+ +...+ +++|.-| ++..+.+++.++++
T Consensus 151 dIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~--~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi 228 (252)
T COG1608 151 DIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVA--LGGSGGTDVTGGIAKKLEALLEIARYGKEVYI 228 (252)
T ss_pred HHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhh--hcCcCcccchhhHHHHHHHHHHHHhcCceEEE
Confidence 9999999999999999999999999999999999998887755422 22222 3566653 55555667788999
Q ss_pred eecCCC---------CCCceEEe
Q 020388 202 RNIFNL---------SVPGIMIC 215 (327)
Q Consensus 202 ~n~~~~---------e~~GT~I~ 215 (327)
+|++.| +..||.|.
T Consensus 229 ~ng~~~~ni~~~l~G~~vGT~I~ 251 (252)
T COG1608 229 FNGNKPENIYRALRGENVGTRID 251 (252)
T ss_pred ECCCCHHHHHHHhcCCCCceEec
Confidence 998643 45688874
No 65
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.65 E-value=2.4e-15 Score=156.92 Aligned_cols=168 Identities=12% Similarity=0.151 Sum_probs=123.5
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (327)
Q Consensus 34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~ 113 (327)
..+..+.+.|+.....++...|.+.++.+ .+++++. +.+.+... +....+.++.+++ .|.|||++|.
T Consensus 83 ~~~qa~aa~gq~~L~~~y~~~f~~~~i~~-----aQ~Llt~-~d~~~~~~-~~~~~~~l~~lL~--~g~iPVin~n---- 149 (715)
T TIGR01092 83 LDGKACAAVGQSGLMALYETMFTQLDITA-----AQILVTD-LDFRDEQF-RRQLNETVHELLR--MNVVPVVNEN---- 149 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCee-----EEEEech-hhcccHHH-HHHHHHHHHHHHH--CCCEEEEcCC----
Confidence 45666778888877777788888887765 5665543 33322111 2334577888887 8899999751
Q ss_pred CCCCeeeecC---------CcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHH-HHH-----h
Q 020388 114 PDNIPTTLKR---------DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-EMS-----Y 178 (327)
Q Consensus 114 ~~g~~~~lgr---------ggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~-~l~-----~ 178 (327)
+.+++.++ +++|++|+++|.+|+|+.++++|||||||++||+ .|++++|++++..+.. ++. .
T Consensus 150 --D~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~ 226 (715)
T TIGR01092 150 --DAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSR 226 (715)
T ss_pred --CcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccc
Confidence 23333332 3579999999999999999999999999999996 6899999999875444 332 2
Q ss_pred cCCCcccH--hhHHHHHhCCCCEEEeecCCC---------CCCceEEeCC
Q 020388 179 FGANVLHP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP 217 (327)
Q Consensus 179 ~g~~v~~p--~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~~ 217 (327)
.++++|.+ .|+..|.++|++++|.++..+ +..||.|.+.
T Consensus 227 ~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~ 276 (715)
T TIGR01092 227 LGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHED 276 (715)
T ss_pred cCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 45688999 488899999999999987644 3469999643
No 66
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.65 E-value=3.8e-15 Score=136.61 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=124.2
Q ss_pred hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCC--------CCC----CCCCchHHHHHHHHHhhcCCCceEEecCc
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS--------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGF 109 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~--------~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf 109 (327)
.|+. .+-+++.|+++|.+++++++.|-.+++..+ +|. ..+|. +.++.+++ .+.|||+++.
T Consensus 80 ~G~v--Nk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~----~~i~~ll~--~~~IpViapi 151 (265)
T COG0548 80 GGTV--NKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNP----ELIERLLD--NGAIPVIAPI 151 (265)
T ss_pred HHHH--HHHHHHHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECH----HHHHHHHh--CCCceEEecc
Confidence 4565 778899999999999999998855553222 221 24555 78888888 8899999995
Q ss_pred eecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccHh
Q 020388 110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR 187 (327)
Q Consensus 110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p~ 187 (327)
+.+++|++.++. +|++|+.+|.+|+|++++++|||+||++.+|. ..++++++.+|+.++...| ..+|.|+
T Consensus 152 -a~~~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~----~s~i~~~~~~~~~~li~~~~i~~GMi~K 223 (265)
T COG0548 152 -AVDEDGETLNVN---ADTAAGALAAALKAEKLILLTDVPGVLDDKGD----PSLISELDAEEAEELIEQGIITGGMIPK 223 (265)
T ss_pred -eECCCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeCCcccccCCCC----ceeeccCCHHHHHHHHhcCCccCccHHH
Confidence 889999999985 89999999999999999999999999998654 2689999999999999988 6899995
Q ss_pred --hHHHHHhCCCC-EEEeecCCC
Q 020388 188 --TIIPVMRYDIP-IVIRNIFNL 207 (327)
Q Consensus 188 --a~~~a~~~~I~-v~I~n~~~~ 207 (327)
++..|.+.|++ ++|.++..+
T Consensus 224 v~~a~~A~~~Gv~~v~ii~g~~~ 246 (265)
T COG0548 224 VEAALEALESGVRRVHIISGRVP 246 (265)
T ss_pred HHHHHHHHHhCCCeEEEecCCCc
Confidence 77888889994 889887543
No 67
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.55 E-value=1.3e-13 Score=129.80 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=91.2
Q ss_pred HHHHHHhhcCCCceEEecCc----eecCCCCCeeee-cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388 90 KRLEKWFSQSPSNTIIATGF----IASTPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI 164 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gf----i~~~~~g~~~~l-grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~ 164 (327)
+.++.+++ .+.|||++|. +.. .+|..... ...++|++|+++|..|+|+.++++|||||||+.+| .|++++
T Consensus 172 ~~I~~Ll~--~g~IpI~~GggGiPv~~-~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~ 246 (308)
T cd04235 172 EAIKTLVD--NGVIVIAAGGGGIPVVR-EGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKA 246 (308)
T ss_pred HHHHHHHH--CCCEEEEECCCccCEEE-cCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeE
Confidence 56777887 8999999986 222 23432221 12456999999999999999999999999999654 478999
Q ss_pred EeecCHHHHHHHHh---cCCCcccHh---hHHHHHhCCCCEEEeecC------CCCCCceEE
Q 020388 165 LRTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIF------NLSVPGIMI 214 (327)
Q Consensus 165 i~~is~~ea~~l~~---~g~~v~~p~---a~~~a~~~~I~v~I~n~~------~~e~~GT~I 214 (327)
+++++++|+.++.. +++++|.|| |++.+.+.+.+++|.+.. +.+ .||.|
T Consensus 247 i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~-~GT~I 307 (308)
T cd04235 247 LEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGK-AGTVI 307 (308)
T ss_pred cCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCC-CCeEE
Confidence 99999999999885 567899997 667777777888887643 223 58876
No 68
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.55 E-value=1.1e-13 Score=131.25 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=92.6
Q ss_pred HHHHHHhhcCCCceEEecCc--eec-CCCCCeeee-cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388 90 KRLEKWFSQSPSNTIIATGF--IAS-TPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gf--i~~-~~~g~~~~l-grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i 165 (327)
+.++.+++ .+.|||++|+ ++. ++++.+.+. ..+++|.+|+++|.+|+|++++++|||||||++|| .|+++++
T Consensus 176 ~~i~~lL~--~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~i 251 (314)
T PRK12353 176 EAIKTLVD--AGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKKL 251 (314)
T ss_pred HHHHHHHH--CCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeEC
Confidence 77888888 8999999987 222 334433220 13568999999999999999999999999999766 3889999
Q ss_pred eecCHHHHHHHHh---cCCCcccHh--hH-HHH-HhCCCCEEEeecC------CCCCCceEEe
Q 020388 166 RTLSYQEAWEMSY---FGANVLHPR--TI-IPV-MRYDIPIVIRNIF------NLSVPGIMIC 215 (327)
Q Consensus 166 ~~is~~ea~~l~~---~g~~v~~p~--a~-~~a-~~~~I~v~I~n~~------~~e~~GT~I~ 215 (327)
++++++|+.++.. .+.++|.|| ++ +.+ .+.|++++|.+.. +++ .||.|.
T Consensus 252 ~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~-~GT~i~ 313 (314)
T PRK12353 252 DEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGK-AGTVIV 313 (314)
T ss_pred cCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCC-CCeEec
Confidence 9999999988874 456789995 44 455 4778999998742 233 688874
No 69
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.54 E-value=9e-14 Score=128.98 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=113.7
Q ss_pred HHHHHHHHHHcCCceeEEcccceeecc----C-CCCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeee
Q 020388 48 AQMLAAVVRKNGIDCKWMDTREVLIVN----P-TSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL 121 (327)
Q Consensus 48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~----~-~~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~l 121 (327)
...++..|++.|++++++++.+.++.. + ...|+ ..+|. +.|+.+++ .|.|||+++ ++.+..|++.++
T Consensus 100 n~~Lv~~L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~----~~I~~lL~--~g~IPVisp-lg~~~~G~~~Ni 172 (271)
T cd04236 100 CKTLVEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDT----ELLQWCLG--SGHIPLVCP-IGETSSGRSVSL 172 (271)
T ss_pred HHHHHHHHHhCCCCeeeecCccceEEEEEcccCCccceEEEECH----HHHHHHHh--CCCeEEECC-ceECCCCCEEEE
Confidence 566789999999999999987533321 1 11233 35677 88999998 899999999 689999999998
Q ss_pred cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH-HHHHHHHhcC--CCcc---cHh--hHHHHH
Q 020388 122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVL---HPR--TIIPVM 193 (327)
Q Consensus 122 grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~-~ea~~l~~~g--~~v~---~p~--a~~~a~ 193 (327)
+ +|..|+.+|.+|+|++++|+||++|||+. +.+++++++. +|+.+|...| .++| .|+ ++..+.
T Consensus 173 N---aD~~A~~lA~aL~A~KLIfltd~~GV~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l 243 (271)
T cd04236 173 D---SSEVTTAIAKALQPIKVIFLNRSGGLRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNAL 243 (271)
T ss_pred C---HHHHHHHHHHHcCCCEEEEEeCCcceECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhc
Confidence 5 89999999999999999999999999963 2578999995 9999999877 4778 563 666777
Q ss_pred hCCCCEEEee
Q 020388 194 RYDIPIVIRN 203 (327)
Q Consensus 194 ~~~I~v~I~n 203 (327)
..|++++|.+
T Consensus 244 ~~g~sv~I~~ 253 (271)
T cd04236 244 PSMSSAVITS 253 (271)
T ss_pred ccCCeEEEeC
Confidence 8899988876
No 70
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.52 E-value=3e-13 Score=124.46 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=107.8
Q ss_pred hhcHHHHHHHHHHHHHHcCCceeEEcccceeec--cCCCCC---C-CCCCchHHHHHHHHHhhcCCCceEEecCceecCC
Q 020388 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV--NPTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP 114 (327)
Q Consensus 41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~--~~~~~~---~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~ 114 (327)
++++. ...+.+.|.++|++++++++..+... +...++ . ..+|. +.++.+++ .+.|||++|. +.+.
T Consensus 72 al~~v--n~~iv~~l~~~g~~a~~l~~~~~~a~~~~~~d~g~~G~v~~i~~----~~i~~~L~--~g~IPVi~p~-~~~~ 142 (248)
T cd04252 72 VFLEE--NLKLVEALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNK----APIEAAIR--AGYLPILTSL-AETP 142 (248)
T ss_pred HHHHH--HHHHHHHHHhCCCCcccccCceEEEEECcCccCCccCceeeECH----HHHHHHHH--CCCeEEECCc-eECC
Confidence 44543 55567889999999999998643211 011122 2 34666 88899998 8999999995 7788
Q ss_pred CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH-HHHHHHHhcC--CCcccHh--hH
Q 020388 115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVLHPR--TI 189 (327)
Q Consensus 115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~-~ea~~l~~~g--~~v~~p~--a~ 189 (327)
.|++.+++ +|..|+.+|.+|+|++++|+|||+|||+. +.+++++++. +++.++...| +++|.|| ++
T Consensus 143 ~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~ 213 (248)
T cd04252 143 SGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEI 213 (248)
T ss_pred CCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHH
Confidence 88888875 79999999999999999999999999964 2578999986 5777777655 4789886 55
Q ss_pred HHHHhC--CC-CEEEee
Q 020388 190 IPVMRY--DI-PIVIRN 203 (327)
Q Consensus 190 ~~a~~~--~I-~v~I~n 203 (327)
..+.++ ++ .++|.+
T Consensus 214 ~~~~~~~~~~~~v~i~~ 230 (248)
T cd04252 214 KELLDTLPRSSSVSITS 230 (248)
T ss_pred HHHHHhCCCceEEEEEC
Confidence 555555 33 466665
No 71
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=99.52 E-value=6.5e-14 Score=102.84 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=62.9
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
.+++|+++|.+|. .|++.+++|++|++.||++.|++|++|+.+|||+|+++|.+++++.||+.|++
T Consensus 1 ~~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f~~ 66 (66)
T cd04915 1 RVAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAALVE 66 (66)
T ss_pred CEEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHHhC
Confidence 3789999999995 89999999999999999999999999999999999999999999999999974
No 72
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.50 E-value=1.6e-13 Score=121.95 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=119.2
Q ss_pred HHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCc
Q 020388 23 LSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSN 102 (327)
Q Consensus 23 l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 102 (327)
.++.++++..-......++.|+-=...++-..|.++|+.+ .+++++.. .+-+ +-.+.....-|.+++. .+.
T Consensus 76 ~r~~l~~~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~i-----AQvLvT~~-Di~d-~~~r~Nl~~Ti~eLL~--m~v 146 (285)
T KOG1154|consen 76 MRQTLKPQSELAEKRACAAVGQSGLMALYETLFTQYGITI-----AQVLVTRN-DILD-EQQRKNLQNTISELLS--MNV 146 (285)
T ss_pred HHHhhCCccchhhHHHHHHhCcchHHHHHHHHHHHhccch-----heeeecCc-chhh-HHHHHHHHHHHHHHHh--CCc
Confidence 4444544333345556788888666677788999999886 55555432 2210 0001122244566666 789
Q ss_pred eEEecCceecCCCCCeeeecCCc---chHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHH-----
Q 020388 103 TIIATGFIASTPDNIPTTLKRDG---SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW----- 174 (327)
Q Consensus 103 vpVv~Gfi~~~~~g~~~~lgrgg---sD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~----- 174 (327)
|||+.-.-+.. +.-+-+|+ +|.+|+.+|..++||.++++|||||+||..|.. ..++++++.+..+..
T Consensus 147 iPIvNeNDavs----~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tf 221 (285)
T KOG1154|consen 147 IPIVNENDAVS----PREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTF 221 (285)
T ss_pred eeeecCCCccC----CcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCcccc
Confidence 99985421211 11133455 899999999999999999999999999965543 346888888766443
Q ss_pred -HHHhcCCCcccHh--hHHHHHhCCCCEEEeecCCCCCCc
Q 020388 175 -EMSYFGANVLHPR--TIIPVMRYDIPIVIRNIFNLSVPG 211 (327)
Q Consensus 175 -~l~~~g~~v~~p~--a~~~a~~~~I~v~I~n~~~~e~~G 211 (327)
+-+..|.++|..| |+..|...|++++|.++..|+..+
T Consensus 222 G~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I~ 261 (285)
T KOG1154|consen 222 GSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENIT 261 (285)
T ss_pred CccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHHH
Confidence 3456788999985 899999999999999999887433
No 73
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.49 E-value=9.7e-13 Score=124.34 Aligned_cols=200 Identities=15% Similarity=0.154 Sum_probs=130.9
Q ss_pred ccHHHHHHHHHHHHhhhcC---------------------C-----CChhHHHHhhhhcHHHHHHHHHHHHH----HcCC
Q 020388 11 LSYEFIRSTYNFLSNVDSG---------------------H-----ATESFTDFVVGHGELWSAQMLAAVVR----KNGI 60 (327)
Q Consensus 11 ~~~~~i~~~~~~l~~~~~~---------------------~-----~~~~~~d~v~s~GE~~s~~l~~~~L~----~~Gi 60 (327)
.+.+.++.....|.++... + .++.-.|.+.+.|+-+.+.+|...|+ ++|+
T Consensus 23 ~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A~~qg~lg~~~~~~l~~~l~~~g~ 102 (310)
T TIGR00746 23 AQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGAMSQGMIGYMLQQALNNELPKRGM 102 (310)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHHhhHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777777777777741 0 11122588889999888999998888 8887
Q ss_pred ceeEEcc-cceeeccCC-CCCC-------------------------------------CCCCchH--HHHHHHHHhhcC
Q 020388 61 DCKWMDT-REVLIVNPT-SSNQ-------------------------------------VDPDFSE--SEKRLEKWFSQS 99 (327)
Q Consensus 61 ~a~~l~~-~~~~~~~~~-~~~~-------------------------------------~~~~~~~--~~~~i~~~l~~~ 99 (327)
+...... .++.+..++ .|.+ +.+.+.. -.+.|+.+++
T Consensus 103 ~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~-- 180 (310)
T TIGR00746 103 EKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRRVVPSPRPKDIVEAETIKTLVE-- 180 (310)
T ss_pred CccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceEeecCCCchhhccHHHHHHHHH--
Confidence 5532221 222222111 1111 0111100 1257788888
Q ss_pred CCceEEecCc--eec-CCCCCeeee-cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388 100 PSNTIIATGF--IAS-TPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE 175 (327)
Q Consensus 100 ~~~vpVv~Gf--i~~-~~~g~~~~l-grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~ 175 (327)
.|.|+|.+|- ++. +++|.+... -.+++|.+|+++|.+|+||.|+++|||||||++ | ..|+++++++++++|+.+
T Consensus 181 ~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~-~~p~a~~i~~it~~e~~~ 258 (310)
T TIGR00746 181 NGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN-Y-GKPDEKALREVTVEELED 258 (310)
T ss_pred CCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-C-CCCCCcCCcCcCHHHHHH
Confidence 7777666653 222 344443211 125689999999999999999999999999996 4 357899999999999998
Q ss_pred HHh---cCCCcccHh---hHHHHHhCCCCEEEeecC------CCCCCceEEe
Q 020388 176 MSY---FGANVLHPR---TIIPVMRYDIPIVIRNIF------NLSVPGIMIC 215 (327)
Q Consensus 176 l~~---~g~~v~~p~---a~~~a~~~~I~v~I~n~~------~~e~~GT~I~ 215 (327)
+.. +++++|.|| |++.+.+.+++++|.+.. +.+ .||+|.
T Consensus 259 ~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 259 YYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRVT 309 (310)
T ss_pred HHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEEe
Confidence 874 556889885 446666667889988743 334 688874
No 74
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.47 E-value=2.3e-13 Score=99.49 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=60.6
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
++|+++|. +...+++++++|++|++.||+|.||+|++|+.++||+|+++|.+++++.||++|+
T Consensus 2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~ 64 (65)
T cd04918 2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFF 64 (65)
T ss_pred cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHh
Confidence 68999999 7778999999999999999999999999999999999999999999999999996
No 75
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.46 E-value=3.3e-13 Score=98.36 Aligned_cols=66 Identities=27% Similarity=0.424 Sum_probs=63.5
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
+++|+++|.++.+.|++.+++|+.|++.||+++|++|++|+.+++|++++++.+++++.||+.|++
T Consensus 1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~~a~~~lh~~~~~ 66 (66)
T cd04919 1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLLE 66 (66)
T ss_pred CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999999998999999999999999999999999974
No 76
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.45 E-value=1.2e-12 Score=122.61 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=110.6
Q ss_pred hcHHHHHHHHHHHHHHcCCceeEEcccceeec-----cCC--------CC---CC-CCCCchHHHHHHHHHhhcCCCceE
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIV-----NPT--------SS---NQ-VDPDFSESEKRLEKWFSQSPSNTI 104 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~-----~~~--------~~---~~-~~~~~~~~~~~i~~~l~~~~~~vp 104 (327)
.|+. ...+.+.|++ |++++++++..+... ... .+ |. ..++. +.|+.+++ .+.||
T Consensus 94 ~g~v--~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~----~~i~~lL~--~g~ip 164 (280)
T cd04237 94 AGAV--RLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDA----DAIRRQLD--QGSIV 164 (280)
T ss_pred HHHH--HHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcH----HHHHHHHH--CCCEE
Confidence 4666 5667777755 888876554322111 110 11 11 23455 88899998 88999
Q ss_pred EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC---C
Q 020388 105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG---A 181 (327)
Q Consensus 105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g---~ 181 (327)
|+++ ++.+.+|+..+++ +|..|+.||.+|+|++++|+|||||||+. +++++++++.+|+.++...| .
T Consensus 165 v~~~-~g~~~~g~~lnvn---aD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ 234 (280)
T cd04237 165 LLSP-LGYSPTGEVFNLS---MEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLT 234 (280)
T ss_pred EECC-ceECCCCCEEeeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCC
Confidence 9998 5888889988775 69999999999999999999999999963 36799999999999998765 4
Q ss_pred CcccHh--hHHHHHhCCC-CEEEeecCCC
Q 020388 182 NVLHPR--TIIPVMRYDI-PIVIRNIFNL 207 (327)
Q Consensus 182 ~v~~p~--a~~~a~~~~I-~v~I~n~~~~ 207 (327)
++|.|| ++..+.+.|+ +++|.++..|
T Consensus 235 ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~ 263 (280)
T cd04237 235 NDTARLLQAAIEACRGGVPRVHLISYAED 263 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 789996 6666677899 5999887544
No 77
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.44 E-value=1.3e-12 Score=129.80 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=116.8
Q ss_pred hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC-------------CCCC----CCCCchHHHHHHHHHhhcCCCceE
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-------------SSNQ----VDPDFSESEKRLEKWFSQSPSNTI 104 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~i~~~l~~~~~~vp 104 (327)
.|+. ...+.+.|+ .|++++++.+..+...+.. .+|. ..++. +.++.+++ .|.||
T Consensus 101 ~g~v--~~~l~~~l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~----~~i~~ll~--~g~ip 171 (441)
T PRK05279 101 AGEL--RLDIEARLS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDA----EAIRRQLD--SGAIV 171 (441)
T ss_pred HHHH--HHHHHHHHh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeH----HHHHHHHH--CCCeE
Confidence 4533 556677774 5999888766554332210 1121 22445 78888988 88999
Q ss_pred EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh---cC-
Q 020388 105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FG- 180 (327)
Q Consensus 105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~---~g- 180 (327)
|+++ ++.+.+|++.+++ +|.+|+.||.+|+|++++|+|||||||+. +++++++++.+|+.++.. .|
T Consensus 172 V~~~-i~~~~~g~~~ni~---~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~ 241 (441)
T PRK05279 172 LLSP-LGYSPTGESFNLT---MEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGD 241 (441)
T ss_pred EECC-ceECCCCCEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCC
Confidence 9965 6888889888774 79999999999999999999999999953 368999999999988875 44
Q ss_pred -CCcccHh--hHHHHHhCCC-CEEEeecCCC----------CCCceEEeCC
Q 020388 181 -ANVLHPR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP 217 (327)
Q Consensus 181 -~~v~~p~--a~~~a~~~~I-~v~I~n~~~~----------e~~GT~I~~~ 217 (327)
.++|.|| ++..+.+.|+ +++|.++..| +..||.|...
T Consensus 242 ~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 242 YNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME 292 (441)
T ss_pred CCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence 4789996 5556667899 5888887543 2469999865
No 78
>PRK12686 carbamate kinase; Reviewed
Probab=99.43 E-value=1.4e-12 Score=122.92 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=91.7
Q ss_pred HHHHHHhhcCCCceEEecCcee---cCCCCCeeeec-CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388 90 KRLEKWFSQSPSNTIIATGFIA---STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~---~~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i 165 (327)
+.|+.+++ .+.|||.+|.-| .++++.+.... .+++|.+|++||.+|+|++++|+|||||||+ ||+ .|++++|
T Consensus 174 ~~I~~Ll~--~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~I 249 (312)
T PRK12686 174 DTIRTLVD--GGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQKL 249 (312)
T ss_pred HHHHHHHH--CCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeEC
Confidence 67888888 899999988622 23455443331 4578999999999999999999999999999 465 4789999
Q ss_pred eecCHHHHHHHHh---cCCCcccHh--hHHHHHh--CCCCEEEeecC------CCCCCceEEe
Q 020388 166 RTLSYQEAWEMSY---FGANVLHPR--TIIPVMR--YDIPIVIRNIF------NLSVPGIMIC 215 (327)
Q Consensus 166 ~~is~~ea~~l~~---~g~~v~~p~--a~~~a~~--~~I~v~I~n~~------~~e~~GT~I~ 215 (327)
++++.+|+.++.. +++++|.|| |+..+.+ .+.+++|.+.. +.+ .||+|.
T Consensus 250 ~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 250 DDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGN-AGTHIT 311 (312)
T ss_pred CccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCC-CCeEEe
Confidence 9999999998874 446889996 5555443 35788887743 222 588874
No 79
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=99.42 E-value=8.1e-13 Score=96.04 Aligned_cols=65 Identities=31% Similarity=0.556 Sum_probs=62.8
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
+++|+++|.++.+.|++.+++|++|++.||+++|++|+.++.+++|++++++.++++++||+.|+
T Consensus 1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999998899999999999999999999999986
No 80
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=99.42 E-value=1.6e-12 Score=98.42 Aligned_cols=79 Identities=49% Similarity=0.764 Sum_probs=75.9
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCceeEEE
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSAS 319 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~ 319 (327)
+++|+++|.++.+.+++.+++|+.|++++|+++|++|++++.+++|++++++..++++.||+.|+.+++++.++|+.++
T Consensus 1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (80)
T cd04921 1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEFALEIKAGLIKPIEVE 79 (80)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHHhhhhhCcccceEee
Confidence 5899999999999999999999999999999999999988999999999999999999999999999999999999875
No 81
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=99.39 E-value=1.5e-12 Score=94.87 Aligned_cols=63 Identities=30% Similarity=0.524 Sum_probs=59.9
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
+++|+++|.+|...|++++|+|++|++.||++.++++ |+.+|||+|+++|.++++++||++|+
T Consensus 1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~--Se~~is~~v~~~~~~~av~~Lh~~f~ 63 (64)
T cd04937 1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD--SHTTISCLVSEDDVKEAVNALHEAFE 63 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc--CccEEEEEEcHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999998874 79999999999999999999999985
No 82
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.37 E-value=8e-12 Score=123.71 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=113.9
Q ss_pred hcHHHHHHHHHHHHHHcCCceeE-----Ecccceeecc-------C-CCCCC----CCCCchHHHHHHHHHhhcCCCceE
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKW-----MDTREVLIVN-------P-TSSNQ----VDPDFSESEKRLEKWFSQSPSNTI 104 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~-----l~~~~~~~~~-------~-~~~~~----~~~~~~~~~~~i~~~l~~~~~~vp 104 (327)
.|+. .+-+.+.|++. +++.+ +++.+..++. + ..+|. ..++. +.++.+++ .+.||
T Consensus 93 ~g~v--n~~l~~~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~----~~l~~ll~--~g~ip 163 (429)
T TIGR01890 93 AGTL--RLAIEARLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDT----EGIRRQLD--AGSIV 163 (429)
T ss_pred hChH--HHHHHHHHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcH----HHHHHHHH--CCCeE
Confidence 4555 56677888776 54433 3333322221 0 01222 34566 88899998 88999
Q ss_pred EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCc-
Q 020388 105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANV- 183 (327)
Q Consensus 105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v- 183 (327)
|+++ ++.+.+|+..+++ +|..|+.||.+|+|++++|+|||||||+. +.+++++|+.+|+.++.......
T Consensus 164 vi~p-i~~~~~g~~~nvn---aD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~ 233 (429)
T TIGR01890 164 LLSP-LGHSPTGETFNLD---MEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSET 233 (429)
T ss_pred EECC-cccCCCCCEEEeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCC
Confidence 9998 5888889998885 79999999999999999999999999963 25799999999998887643334
Q ss_pred ccHh--hHHHHHhCCC-CEEEeecCCC----------CCCceEEeCC
Q 020388 184 LHPR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP 217 (327)
Q Consensus 184 ~~p~--a~~~a~~~~I-~v~I~n~~~~----------e~~GT~I~~~ 217 (327)
|.|+ ++..|.+.|+ +++|.++..| +..||.|...
T Consensus 234 ~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d 280 (429)
T TIGR01890 234 TRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKE 280 (429)
T ss_pred cHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEecc
Confidence 4775 6667778897 5899887533 3469999754
No 83
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.37 E-value=2.6e-12 Score=93.48 Aligned_cols=64 Identities=38% Similarity=0.613 Sum_probs=60.7
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
+++|+++|.+|++.|++.+++|++|++ ++|.+++|++|+.+++|+|+++|.+++++.||++|+.
T Consensus 1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f~~ 64 (64)
T cd04917 1 LALVALIGNDISETAGVEKRIFDALED--INVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRLFE 64 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999975 8999999999999999999999999999999999973
No 84
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.36 E-value=2.1e-12 Score=93.86 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=58.2
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
|+|+++|.+|...|++.+++|++|++. +|.+++|++|+.+|||+|+++|.++++++||++|++
T Consensus 1 a~VsvVG~g~~~~~gv~~~~~~~L~~~--~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~~f~~ 63 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKK--PVHLVSQAANDLNLTFVVDEDQADGLCARLHFQLIE 63 (63)
T ss_pred CEEEEECCCcccCccHHHHHHHHHhcC--CceEEEEeCCCCeEEEEEeHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999886 556678889999999999999999999999999974
No 85
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.36 E-value=1.8e-11 Score=115.36 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=91.9
Q ss_pred HHHHHHhhcCCCceEEecCce---ecCCCCCeeeec-CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388 90 KRLEKWFSQSPSNTIIATGFI---ASTPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi---~~~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i 165 (327)
+.|+.+++ .+.|||++|.- ..+++|.+.++. -.+.|.+|+++|..|+||+++++|||||||++ |+ .|+++++
T Consensus 176 ~aI~~LLe--~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i 251 (313)
T PRK12454 176 EVIKALVE--NGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPL 251 (313)
T ss_pred HHHHHHHH--CCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEc
Confidence 78888898 89999999862 135566554322 23569999999999999999999999999986 44 4789999
Q ss_pred eecCHHHHHHHHh---cCCCcccHh--h-HHHHHhCCCCEEEeecC------CCCCCceEEe
Q 020388 166 RTLSYQEAWEMSY---FGANVLHPR--T-IIPVMRYDIPIVIRNIF------NLSVPGIMIC 215 (327)
Q Consensus 166 ~~is~~ea~~l~~---~g~~v~~p~--a-~~~a~~~~I~v~I~n~~------~~e~~GT~I~ 215 (327)
++++++|+.++.. ++.+.|.|| + ++.+.+.+.+++|.+.. +++ .||+|.
T Consensus 252 ~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~-~GT~I~ 312 (313)
T PRK12454 252 DKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGK-TGTRII 312 (313)
T ss_pred cccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCC-CCeEeC
Confidence 9999999988774 345789995 4 45555556788887542 233 589885
No 86
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.35 E-value=4.5e-12 Score=92.09 Aligned_cols=65 Identities=32% Similarity=0.452 Sum_probs=62.6
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
+++|+++|.++...|++.+++|+.|++.||+++|++|+.++.+++|+++++|..++++.||++|+
T Consensus 1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~ 65 (66)
T cd04916 1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFF 65 (66)
T ss_pred CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999998889999999999999999999999996
No 87
>PRK12354 carbamate kinase; Reviewed
Probab=99.34 E-value=3.4e-11 Score=113.12 Aligned_cols=122 Identities=20% Similarity=0.158 Sum_probs=89.4
Q ss_pred HHHHHHhhcCCCceEEecCceec----CCCCCeeeec-CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388 90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI 164 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~----~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~ 164 (327)
+.|+.+++ .+.|||.+|.=|. +.++...... ..++|.+|+.||..|+|+.++|+|||||||+++ . .|++++
T Consensus 166 ~~I~~Ll~--~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~-~-~p~~k~ 241 (307)
T PRK12354 166 RPIRWLLE--KGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDW-G-KPTQRA 241 (307)
T ss_pred HHHHHHHH--CCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCC-C-CCCCeE
Confidence 77888888 7888777643121 1223322211 346899999999999999999999999999974 3 478999
Q ss_pred EeecCHHHHHHHHhcCCCcccHh--h-HHHHHhCCCCEEEeecC------CCCCCceEEeCC
Q 020388 165 LRTLSYQEAWEMSYFGANVLHPR--T-IIPVMRYDIPIVIRNIF------NLSVPGIMICRP 217 (327)
Q Consensus 165 i~~is~~ea~~l~~~g~~v~~p~--a-~~~a~~~~I~v~I~n~~------~~e~~GT~I~~~ 217 (327)
+++++.+|+.++ .++++.|.|| | ++.+.+.+.+++|.+.. ..+ .||+|...
T Consensus 242 i~~it~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 242 IAQATPDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAGE-AGTRISPE 301 (307)
T ss_pred CCCCCHHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCC-CceEEecC
Confidence 999999999888 6788899996 4 45555556678775432 222 69999753
No 88
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.31 E-value=1.1e-11 Score=90.03 Aligned_cols=65 Identities=46% Similarity=0.718 Sum_probs=62.2
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
+++|+++|.++.+.+++.+++|+.|++.||+++|++|+.++.+++|+++++|.+++.+.||+.|.
T Consensus 1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~~ 65 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEFG 65 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999998889999999999999999999999883
No 89
>PRK06291 aspartate kinase; Provisional
Probab=99.30 E-value=1.3e-11 Score=123.32 Aligned_cols=123 Identities=24% Similarity=0.343 Sum_probs=94.2
Q ss_pred cccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchh-----hhhcCCeeeEEeecCeeEEEeecCCCCCcccH
Q 020388 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDE-----QIIDSPVKGFATIDNLALVNVEGTGMAGVPGT 257 (327)
Q Consensus 183 v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~-----~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v 257 (327)
++-.+.+..+.++||++...+....+..=+...+.. +.+... ......++.+++.+++++|+++|.+|++.+++
T Consensus 336 g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~-d~~~av~~L~~~~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gv 414 (465)
T PRK06291 336 GTAARIFSALAEEGVNVIMISQGSSESNISLVVDEA-DLEKALKALRREFGEGLVRDVTFDKDVCVVAVVGAGMAGTPGV 414 (465)
T ss_pred cHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHH-HHHHHHHHHHHHHHHhcCcceEEeCCEEEEEEEcCCccCCcCh
Confidence 444567788889999987776443221112222221 111000 01112357799999999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 258 ~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
.+|+|++|++.||+|.||+|++|+.+|||+|+++|.++++++||++|+.
T Consensus 415 ~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~~f~~ 463 (465)
T PRK06291 415 AGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEFIL 463 (465)
T ss_pred HHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999953
No 90
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.29 E-value=9.7e-12 Score=111.15 Aligned_cols=101 Identities=22% Similarity=0.236 Sum_probs=80.0
Q ss_pred HHHHHHhhcCCCceEEecCceec----CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388 90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~----~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i 165 (327)
..+...+. .+.|||+.++ +. ++.++..++ .+|+.|+.+|..|+|++++++|||||||++| ++++
T Consensus 82 ~~~~~~~~--~g~ipV~~P~-~~~~~~~~~~~~~~~---ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i 149 (203)
T cd04240 82 AELTDVLE--RGKIAILLPY-RLLLDTDPLPHSWEV---TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLV 149 (203)
T ss_pred HHHHHHHH--CCCcEEEeCc-hhhcccCCCCccccc---CHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCc
Confidence 56677776 7899999886 33 223333332 3799999999999999999999999999865 7899
Q ss_pred eecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC
Q 020388 166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207 (327)
Q Consensus 166 ~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~ 207 (327)
+++++.|+.. ..++++.+.+.+.++|++++|.++..|
T Consensus 150 ~~i~~~e~~~-----~~~id~~~~~~~~~~gi~v~I~~g~~~ 186 (203)
T cd04240 150 NEIAAAELLG-----ETSVDPAFPRLLTKYGIRCYVVNGDDP 186 (203)
T ss_pred cccCHHHhCC-----CCeehhhHHHHHHhCCCeEEEECCCCc
Confidence 9999987643 666777677888999999999998755
No 91
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.26 E-value=3.9e-11 Score=118.70 Aligned_cols=121 Identities=26% Similarity=0.257 Sum_probs=89.2
Q ss_pred cccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcc---hhhhh-cCCeeeEEeecCeeEEEeecCCCCCcccHH
Q 020388 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENE---DEQII-DSPVKGFATIDNLALVNVEGTGMAGVPGTA 258 (327)
Q Consensus 183 v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~---~~~~~-~~~v~~i~~~~~la~IsIvG~~~~~~~~v~ 258 (327)
++..+-+..+.++||++........+..-+...+..+ .+. .++.. ......+.+.+++|+|++||.||..+||++
T Consensus 322 g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~-~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~~~~gva 400 (447)
T COG0527 322 GFAARVFGILAEAGINVDLITQSISEVSISFTVPESD-APRALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGVA 400 (447)
T ss_pred cHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhh-HHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccccCcCHH
Confidence 4445667788889999755543322211122223221 110 01111 111226888999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
+++|++|++.+||+.||+ +|+.+|||+|+++|.++|+++||+.|+.
T Consensus 401 a~~f~aL~~~~ini~~is--sSe~~Is~vV~~~~~~~av~~LH~~~~~ 446 (447)
T COG0527 401 ARIFQALAEENINIIMIS--SSEISISFVVDEKDAEKAVRALHEAFFL 446 (447)
T ss_pred HHHHHHHHhCCCcEEEEE--cCCceEEEEEccHHHHHHHHHHHHHHhc
Confidence 999999999999999999 7899999999999999999999999974
No 92
>PRK09411 carbamate kinase; Reviewed
Probab=99.25 E-value=1.3e-10 Score=108.57 Aligned_cols=160 Identities=17% Similarity=0.165 Sum_probs=104.3
Q ss_pred hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCc--ee--cCCCCC
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF--IA--STPDNI 117 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf--i~--~~~~g~ 117 (327)
+|-.++..--.....+.|- ..-.+++-+..+-.+......++. +.|+.+++ .+.|||.+|. ++ .+.+|.
T Consensus 124 iG~~y~~e~a~~l~~e~g~-~~~~dg~g~rrVVpSP~P~~iVe~----~~I~~Ll~--~G~IVI~~gGGGIPV~~~~~G~ 196 (297)
T PRK09411 124 IGPVYQPEEQEALEAAYGW-QMKRDGKYLRRVVASPQPRKILDS----EAIELLLK--EGHVVICSGGGGVPVTEDGAGS 196 (297)
T ss_pred cCCccCHHHHHHHHHhcCC-EEEecCCceEEEccCCCCcceECH----HHHHHHHH--CCCEEEecCCCCCCeEEcCCCe
Confidence 5555555553333334454 333444434332211111123445 78889998 7888888753 12 222344
Q ss_pred eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHh---hHHHHHh
Q 020388 118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR---TIIPVMR 194 (327)
Q Consensus 118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~---a~~~a~~ 194 (327)
..+ .+.|.+|+.||.+|+|++++|+|||||||..+ . .|+++++++++.+|+.++.. ..+.|.|| |++.+.+
T Consensus 197 e~v---IDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~-~-~p~~~~I~~it~~e~~~~~~-~~GgM~pKVeAA~~~v~~ 270 (297)
T PRK09411 197 EAV---IDKDLAAALLAEQINADGLVILTDADAVYENW-G-TPQQRAIRHATPDELAPFAK-ADGAMGPKVTAVSGYVRS 270 (297)
T ss_pred EEe---cCHHHHHHHHHHHhCCCEEEEEeCchhhccCC-C-CCCCcCCCCcCHHHHHHhcc-CCCCcHHHHHHHHHHHHh
Confidence 333 35799999999999999999999999999864 2 57789999999999977765 46779996 4566666
Q ss_pred CCCCEEEeecC------CCCCCceEEe
Q 020388 195 YDIPIVIRNIF------NLSVPGIMIC 215 (327)
Q Consensus 195 ~~I~v~I~n~~------~~e~~GT~I~ 215 (327)
.+.+++|.+.. ..+ .||+|.
T Consensus 271 ~g~~a~I~~l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 271 RGKPAWIGALSRIEETLAGE-AGTCIS 296 (297)
T ss_pred CCCeEEECChhHHHHHHCCC-CCeEEe
Confidence 77888886542 222 588874
No 93
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.25 E-value=4.9e-11 Score=126.45 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=100.4
Q ss_pred ccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCc--------chhhhhcCCeeeEEeecCeeEEEeecCCCCCcc
Q 020388 184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN--------EDEQIIDSPVKGFATIDNLALVNVEGTGMAGVP 255 (327)
Q Consensus 184 ~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~--------~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~ 255 (327)
+-.+.+..+.++||++...+....+..=+.+.+...-.. +..+...+.++.+++.+++++|+++|.+|+..|
T Consensus 331 ~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvvG~gm~~~~ 410 (819)
T PRK09436 331 MASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVVGDGMRTHP 410 (819)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEEccCcccCc
Confidence 444678888899999877765432222222222211000 000111235778999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCceeEEEEee
Q 020388 256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSASILS 322 (327)
Q Consensus 256 ~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~ 322 (327)
++++|+|++|++.||||.||+|++|+++|||+|+++|.++++++||++|+.+. +.+++-|.|
T Consensus 411 gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~~f~~~~-----~~~~i~l~G 472 (819)
T PRK09436 411 GIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQSFFLSD-----QVLDVFVIG 472 (819)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHHHHhccc-----ccccEEEEe
Confidence 99999999999999999999999999999999999999999999999997542 345555554
No 94
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=99.18 E-value=7e-11 Score=86.42 Aligned_cols=63 Identities=38% Similarity=0.588 Sum_probs=58.5
Q ss_pred eecCeeEEEeecCCCCC-cccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388 237 TIDNLALVNVEGTGMAG-VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 237 ~~~~la~IsIvG~~~~~-~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
+.++++.|+++|.+|.. .||+.+++|++|+++||+|.+++ |+.+++++|+++|.++|+++||+
T Consensus 2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is---S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS---SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE---ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE---EeeeEEEEEeHHHHHHHHHHhcC
Confidence 46799999999999976 99999999999999999999998 69999999999999999999995
No 95
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.17 E-value=1.9e-10 Score=109.00 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=85.5
Q ss_pred HHHHHHhhcCCCceEEec-----CceecCCCCC----eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCC
Q 020388 90 KRLEKWFSQSPSNTIIAT-----GFIASTPDNI----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS 160 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~-----Gfi~~~~~g~----~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~ 160 (327)
+.|+.+++ .+.|+|.+ +. +.+..|+ ..++ +.|.+|+.+|.+|+|++|+|+|||+|||.++|+ |
T Consensus 177 ~~I~~ll~--~g~iVi~~ggggiPv-~~~~~g~~~n~~~nI---naD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~ 248 (316)
T PRK12352 177 PAIKALIQ--QGFVVIGAGGGGIPV-VRTDAGDYQSVDAVI---DKDLSTALLAREIHADILVITTGVEKVCIHFGK--P 248 (316)
T ss_pred HHHHHHHH--CCCEEEecCCCCCCE-EeCCCCCccCceeee---cHHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--C
Confidence 77888888 78895554 21 2233333 2223 379999999999999999999999999987654 6
Q ss_pred CCeEEeecCHHHHHHHHhcC---CCcccHh--hHHHHHhCCC-CEEEeecC------CCCCCceEEe
Q 020388 161 EAVILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMIC 215 (327)
Q Consensus 161 ~a~~i~~is~~ea~~l~~~g---~~v~~p~--a~~~a~~~~I-~v~I~n~~------~~e~~GT~I~ 215 (327)
+++++++++..|+.++...| .++|.|| |+..+.+.|+ +++|.+.. +.+ .||+|.
T Consensus 249 ~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~~~~i~~al~g~-~GT~I~ 314 (316)
T PRK12352 249 QQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGE-TGTHII 314 (316)
T ss_pred CcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcchHHHHHHHcCC-CCeEEE
Confidence 67899999999999998754 4689995 4444445555 68887642 233 688885
No 96
>PRK09034 aspartate kinase; Reviewed
Probab=99.15 E-value=1.3e-10 Score=115.82 Aligned_cols=119 Identities=23% Similarity=0.243 Sum_probs=90.9
Q ss_pred HhhHHHHHhCCCCEEEeecCCCCCCceEEe-CCCC-CC---cchh-hhh-cCCeeeEEeecCeeEEEeecCCCCCcccHH
Q 020388 186 PRTIIPVMRYDIPIVIRNIFNLSVPGIMIC-RPPV-DE---NEDE-QII-DSPVKGFATIDNLALVNVEGTGMAGVPGTA 258 (327)
Q Consensus 186 p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~-~~~~-~~---~~~~-~~~-~~~v~~i~~~~~la~IsIvG~~~~~~~~v~ 258 (327)
.+.+....++||++.+.... + ..-.+. .+.. +. .... +.. .-.+.++++.+|+++|+++|.+|++.|++.
T Consensus 326 a~if~~la~~~I~Vd~i~ss--~-~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv~ 402 (454)
T PRK09034 326 RKVLQILEDHGISYEHMPSG--I-DDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVA 402 (454)
T ss_pred HHHHHHHHHcCCeEEEEcCC--C-cEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccHH
Confidence 35677888999998776421 1 122222 2211 10 0000 111 113578999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
+++|++|+++||||.||+|++|+.+|||+|+++|.+++++.||++|+.+
T Consensus 403 arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~~f~~~ 451 (454)
T PRK09034 403 AKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYNAFFKE 451 (454)
T ss_pred HHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999753
No 97
>PRK09084 aspartate kinase III; Validated
Probab=99.12 E-value=5.5e-10 Score=111.14 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=90.1
Q ss_pred cccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCc-----chhh--hhcCCeeeEEeecCeeEEEeecCCCCCcc
Q 020388 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN-----EDEQ--IIDSPVKGFATIDNLALVNVEGTGMAGVP 255 (327)
Q Consensus 183 v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~-----~~~~--~~~~~v~~i~~~~~la~IsIvG~~~~~~~ 255 (327)
++-.+.+....+++|++....... ..-|....+..... .... ..-..+..+.+.+++++|+++|.+|+++|
T Consensus 321 g~~a~if~~l~~~~I~Vd~I~sse--~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~i~~~~~va~IsvvG~gm~~~~ 398 (448)
T PRK09084 321 GFLAEVFGILARHKISVDLITTSE--VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEVEEGLALVALIGNNLSKAC 398 (448)
T ss_pred cHHHHHHHHHHHcCCeEEEEeccC--cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCeEEEECCeEEEEEECCCcccCc
Confidence 444567788889999987776432 11122222221010 0000 01123567888999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 256 ~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
++++|+|++|++ +||.||+|++|+.+|||+|+++|.++++++||++|++
T Consensus 399 gv~arif~aL~~--~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~~f~~ 447 (448)
T PRK09084 399 GVAKRVFGVLEP--FNIRMICYGASSHNLCFLVPESDAEQVVQALHQNLFE 447 (448)
T ss_pred ChHHHHHHHHHh--CCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHHHHhc
Confidence 999999999986 6899999999999999999999999999999999975
No 98
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.07 E-value=6e-10 Score=109.36 Aligned_cols=121 Identities=25% Similarity=0.384 Sum_probs=91.2
Q ss_pred cccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhh-----cCCeeeEEeecCeeEEEeecCCCCCcccH
Q 020388 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQII-----DSPVKGFATIDNLALVNVEGTGMAGVPGT 257 (327)
Q Consensus 183 v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~-----~~~v~~i~~~~~la~IsIvG~~~~~~~~v 257 (327)
++-.+.+..+.+++|++...+....+..=+.+.... +.....+.. ...+..+.+.+++++|+++|.+|++.||+
T Consensus 275 g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~-d~~~a~~~L~~~~~~~~~~~i~~~~~~a~IsvVG~~~~~~~g~ 353 (401)
T TIGR00656 275 GFLARIFGALAERNINVDLISQTPSETSISLTVDET-DADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGAPGV 353 (401)
T ss_pred cHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHH-HHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcccCccH
Confidence 344467788889999988776643322222223221 111111101 11246788899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 258 ~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
++++|++|+++|||+.+++ +|+.+++|+|+++|.++++++||++|+.
T Consensus 354 ~a~i~~~L~~~gIni~~i~--~s~~~is~vv~~~d~~~av~~Lh~~f~~ 400 (401)
T TIGR00656 354 ASEIFSALEEKNINILMIG--SSETNISFLVDEKDAEKAVRKLHEVFEE 400 (401)
T ss_pred HHHHHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcc
Confidence 9999999999999999987 7899999999999999999999999964
No 99
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.05 E-value=3.6e-09 Score=103.49 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=82.5
Q ss_pred HHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH-
Q 020388 92 LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY- 170 (327)
Q Consensus 92 i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~- 170 (327)
++.+++ .|.|||++++ |.+..|++.+++ +|..|+.+|.+|+|++++++|||+|||+.| ++++++++.
T Consensus 122 I~~~L~--~g~IPVlspl-g~~~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~ 189 (398)
T PRK04531 122 VESSLR--AGSIPVIASL-GETPSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLS 189 (398)
T ss_pred HHHHHH--CCCEEEEeCc-EECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHH
Confidence 556666 8999999985 777889987775 799999999999999999999999999743 678999996
Q ss_pred HHHHHHHhcC--CCcccHh--hHHHHHhCCCCEEEeec----------CCCCCCceEEeCC
Q 020388 171 QEAWEMSYFG--ANVLHPR--TIIPVMRYDIPIVIRNI----------FNLSVPGIMICRP 217 (327)
Q Consensus 171 ~ea~~l~~~g--~~v~~p~--a~~~a~~~~I~v~I~n~----------~~~e~~GT~I~~~ 217 (327)
+|...+...| .++|.|+ ++..|.+..-.+.+... +.....||.|...
T Consensus 190 ~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g 250 (398)
T PRK04531 190 TEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRG 250 (398)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecC
Confidence 5777776544 4778885 44444433112332222 2223469999743
No 100
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=99.05 E-value=9.2e-10 Score=78.78 Aligned_cols=62 Identities=34% Similarity=0.554 Sum_probs=58.2
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
++|+++|.++.+.+++.+++|+.|++.||+++|+++ ++.+++|+|+++|.+++++.||+.|+
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~d~~~~~~~l~~~~~ 62 (63)
T cd04936 1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST--SEIKISCLIDEDDAEKAVRALHEAFE 62 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc--cCceEEEEEeHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999984 57999999999999999999999984
No 101
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=99.05 E-value=1e-09 Score=78.32 Aligned_cols=64 Identities=47% Similarity=0.733 Sum_probs=60.5
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
++|+++|.++.+.+++.+++|+.|++.+|++.+++|+.++.+++|++++++.+++++.||+.|+
T Consensus 1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~~~~~l~~~~~ 64 (65)
T cd04892 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALHEEFF 64 (65)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999987777999999999999999999999885
No 102
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.03 E-value=1.3e-09 Score=77.98 Aligned_cols=62 Identities=35% Similarity=0.554 Sum_probs=58.2
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
++|+++|.++.+.+++.+++|+.|++++|+++++++ ++.+++|++++++.+++++.||++|+
T Consensus 1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~~~~~~~~~l~~~l~ 62 (63)
T cd04923 1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST--SEIKISCLVDEDDAEKAVRALHEAFE 62 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc--cCCeEEEEEeHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999984 58999999999999999999999984
No 103
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=98.98 E-value=2.8e-09 Score=106.01 Aligned_cols=120 Identities=26% Similarity=0.336 Sum_probs=90.4
Q ss_pred ccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhh-----hhcCCeeeEEeecCeeEEEeecCCCCCcccHH
Q 020388 184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQ-----IIDSPVKGFATIDNLALVNVEGTGMAGVPGTA 258 (327)
Q Consensus 184 ~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~-----~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~ 258 (327)
+-.+.+..+.++||++........+. .-.+.-+..+...... .....++++++.+++++|+++|.+|++.|++.
T Consensus 317 ~la~if~~L~~~~I~I~~i~q~~se~-sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~ 395 (441)
T TIGR00657 317 FLARVFGALAEAGINVDLITQSSSET-SISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVA 395 (441)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCc-eEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchH
Confidence 33467788889999987765332221 1122211111110110 11345788999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
+++|+.|+++||||.||+ +|+.+++|+|+++|.+++++.||++|++
T Consensus 396 a~if~~La~~~Inv~~i~--~se~~Is~vV~~~d~~~a~~~Lh~~f~~ 441 (441)
T TIGR00657 396 SKIFEALAQNGINIEMIS--SSEINISFVVDEKDAEKAVRLLHNALFE 441 (441)
T ss_pred HHHHHHHHHCCCCEEEEE--ecCCcEEEEEeHHHHHHHHHHHHHHhhC
Confidence 999999999999999998 4689999999999999999999999963
No 104
>PLN02825 amino-acid N-acetyltransferase
Probab=98.95 E-value=4.8e-09 Score=105.44 Aligned_cols=108 Identities=9% Similarity=0.103 Sum_probs=84.1
Q ss_pred HHHHcCCce----eEEcccceeeccCC--------CCCC----CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCC
Q 020388 54 VVRKNGIDC----KWMDTREVLIVNPT--------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI 117 (327)
Q Consensus 54 ~L~~~Gi~a----~~l~~~~~~~~~~~--------~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~ 117 (327)
.|+++|.++ ..++..+-..++.. .+|. ..+|. +.|+.+++ .|.|||+++ +|.+.+|+
T Consensus 112 ~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~----~~i~~~L~--~g~Ipvisp-lg~s~~Ge 184 (515)
T PLN02825 112 NLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDV----SRIKERLD--SNCIVLLSN-LGYSSSGE 184 (515)
T ss_pred HHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcH----HHHHHHHh--CCCeEEECC-ceECCCCC
Confidence 469999998 56655443222211 2332 35666 88888998 899999999 59999999
Q ss_pred eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh
Q 020388 118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178 (327)
Q Consensus 118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~ 178 (327)
+.+++ +|..|+.+|.+|+|++|+|+||++ +++. +.+++++++.+|+.++..
T Consensus 185 ~~Nin---aD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~ 235 (515)
T PLN02825 185 VLNCN---TYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIR 235 (515)
T ss_pred EEeeC---HHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHH
Confidence 99985 899999999999999999999987 5543 356899999999988865
No 105
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.95 E-value=5.7e-09 Score=110.38 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=93.5
Q ss_pred ccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhh--cCCeeeEEeecCeeEEEeecCCCCCcccHHHHH
Q 020388 184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQII--DSPVKGFATIDNLALVNVEGTGMAGVPGTANAI 261 (327)
Q Consensus 184 ~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~--~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~i 261 (327)
+..+-+....+++|++.+.+....+. ...+.-...+.+...... ......+.+.+++++|++||.+|+..+++++++
T Consensus 333 ~~~~if~~l~~~~I~v~~i~~~~s~~-sis~~i~~~~~~~~~~~l~~~~~~~~i~v~~~~a~VsvVG~gm~~~~gv~~~~ 411 (810)
T PRK09466 333 AQKELDQLLKRAQLRPLAVGVHPDRQ-LLQLAYTSEVADSALKLLDDAALPGELKLREGLALVALVGAGVTRNPLHCHRF 411 (810)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCc-EEEEEEeHHHHHHHHHHHHhhcCCCcEEEeCCeEEEEEeCCCcccCccHHHHH
Confidence 34567788889999987775443221 222322211111001100 012367888999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCceeEEEEee
Q 020388 262 FGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSASILS 322 (327)
Q Consensus 262 f~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~ 322 (327)
|++|++.||++.+ |++|+.+|||+|+++|.++|+++||++|+... ..+++-+.|
T Consensus 412 f~aL~~~~I~ii~--~~~s~~sis~vV~~~d~~~av~~LH~~f~~~~-----~~i~i~l~G 465 (810)
T PRK09466 412 YQQLKDQPVEFIW--QSEDGLSLVAVLRQGPTESLIQGLHQSLFRAE-----KRIGLVLFG 465 (810)
T ss_pred HHHHHhCCCcEEE--EeCCCcEEEEEEehHHHHHHHHHHHHHHhCcC-----ceEEEEEEe
Confidence 9999999777655 55789999999999999999999999997532 356666665
No 106
>PRK07431 aspartate kinase; Provisional
Probab=98.93 E-value=3.1e-09 Score=109.31 Aligned_cols=72 Identities=31% Similarity=0.449 Sum_probs=67.8
Q ss_pred eeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 233 ~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
..+.+.+++|+|++||.+|+.+||+++|+|++|+++||++.+++ +|+.+|||+|+++|.++|+++||++|..
T Consensus 511 ~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~S~~~Is~vV~~~~~~~av~~Lh~~f~~ 582 (587)
T PRK07431 511 AEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--TSEIRTSCVVAEDDGVKALQAVHQAFGL 582 (587)
T ss_pred ceEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--ccceEEEEEEeHHHHHHHHHHHHHHhcc
Confidence 44678899999999999999999999999999999999999998 6899999999999999999999999943
No 107
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=98.92 E-value=5.6e-09 Score=111.75 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=90.7
Q ss_pred CcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCC--cchhh---hhcCCeeeEEeecCeeEEEeecCCCCCccc
Q 020388 182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE--NEDEQ---IIDSPVKGFATIDNLALVNVEGTGMAGVPG 256 (327)
Q Consensus 182 ~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~--~~~~~---~~~~~v~~i~~~~~la~IsIvG~~~~~~~~ 256 (327)
.++..+-+..+.+++|++.+..... ..=|......... +...+ .....+..+.+.+++|+|++||.+|++.++
T Consensus 336 ~g~~a~if~~la~~~I~Vd~I~sse--~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~~~~~va~ISvVG~gm~~~~g 413 (861)
T PRK08961 336 VGFLADVFTLFKKHGLSVDLISSSE--TNVTVSLDPSENLVNTDVLAALSADLSQICRVKIIVPCAAVSLVGRGMRSLLH 413 (861)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEcCC--CEEEEEEccccccchHHHHHHHHHHHhhcCcEEEeCCeEEEEEeCCCcccCcC
Confidence 3455567888899999987775432 1122222221110 00111 111234567888999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 257 v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
+++++|++|++. +|.|++|++|+.+|||+|+++|.++|++.||++|+..
T Consensus 414 v~arif~aL~~~--~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~~f~~~ 462 (861)
T PRK08961 414 KLGPAWATFGAE--RVHLISQASNDLNLTFVIDESDADGLLPRLHAELIES 462 (861)
T ss_pred hHHHHHHHHhhc--CeEEEECCCccccEEEEEeHHHHHHHHHHHHHHHhcC
Confidence 999999999985 5778999999999999999999999999999999765
No 108
>PRK08210 aspartate kinase I; Reviewed
Probab=98.90 E-value=6.7e-09 Score=102.12 Aligned_cols=137 Identities=19% Similarity=0.283 Sum_probs=95.6
Q ss_pred EEeecCHHHHHHHHh-cCC---CcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeec
Q 020388 164 ILRTLSYQEAWEMSY-FGA---NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATID 239 (327)
Q Consensus 164 ~i~~is~~ea~~l~~-~g~---~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~ 239 (327)
.+.-|++.+-..+.. .+. .+...+-+..+.++||++....... + .++....... .+.........-..+.+.+
T Consensus 261 ~v~~It~~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~is~~v~~~~-~~~a~~~l~~~~~~v~~~~ 337 (403)
T PRK08210 261 LITGIAHVSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-EVVFTVSDED-SEKAKEILENLGLKPSVRE 337 (403)
T ss_pred ceEEEEEcCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-eEEEEEcHHH-HHHHHHHHHHhCCcEEEeC
Confidence 566666554322222 111 3444466778889999987776553 2 2433333211 1111110111111578889
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
++++|+++|.+|++.|++++++|++|+++||++.+++ +|+.+++|+|+++|.++|+++||++|+
T Consensus 338 ~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~--~s~~~is~vv~~~~~~~a~~~Lh~~f~ 401 (403)
T PRK08210 338 NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSA--DSHTTIWVLVKEEDMEKAVNALHDAFE 401 (403)
T ss_pred CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEe--cCCCEEEEEEcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998866 589999999999999999999999984
No 109
>PRK06635 aspartate kinase; Reviewed
Probab=98.87 E-value=1.3e-08 Score=100.10 Aligned_cols=120 Identities=23% Similarity=0.296 Sum_probs=90.0
Q ss_pred ccHhhHHHHHhCCCCEEEeecCCCCC--CceEEeCCCCCCcchhh---hh--cCCeeeEEeecCeeEEEeecCCCCCccc
Q 020388 184 LHPRTIIPVMRYDIPIVIRNIFNLSV--PGIMICRPPVDENEDEQ---II--DSPVKGFATIDNLALVNVEGTGMAGVPG 256 (327)
Q Consensus 184 ~~p~a~~~a~~~~I~v~I~n~~~~e~--~GT~I~~~~~~~~~~~~---~~--~~~v~~i~~~~~la~IsIvG~~~~~~~~ 256 (327)
+-.+.+..+.++||++...+...++. ..-.+.-...+.+...+ .. .-.++.+++.+++++|+++|.+|++.|+
T Consensus 276 ~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~ia~isvvG~~~~~~~g 355 (404)
T PRK06635 276 IAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHPG 355 (404)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCeEEEEEECCCCCCCch
Confidence 33467788889999988777654331 11222211111111111 01 1136779999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388 257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 257 v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
+++++|++|+++||||.+++ +|+.+++|+|+++|.+++++.||++|.
T Consensus 356 ~~a~i~~~La~~~Ini~~i~--ss~~~is~vv~~~d~~~a~~~Lh~~f~ 402 (404)
T PRK06635 356 VAAKMFEALAEEGINIQMIS--TSEIKISVLIDEKYLELAVRALHEAFG 402 (404)
T ss_pred HHHHHHHHHHHCCCCEEEEE--ecCCeEEEEEcHHHHHHHHHHHHHHHC
Confidence 99999999999999999998 478999999999999999999999984
No 110
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=98.85 E-value=1e-08 Score=71.66 Aligned_cols=60 Identities=43% Similarity=0.680 Sum_probs=55.9
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh 301 (327)
++|+++|.+|.+.+++.+++|+.|++++|++++++++.++.+++|++++++.+++++.||
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~~~~~~~~lh 60 (60)
T cd04868 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH 60 (60)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHHHHHHHHHhC
Confidence 478999999989999999999999999999999998877799999999999999999887
No 111
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=98.75 E-value=9.6e-08 Score=71.65 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=56.0
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH---HHHHHHHHHHHHh
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV---KAVAEALESKFRE 306 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~---~~av~~Lh~~f~~ 306 (327)
+++|+++|.++.+.+++.+++|++|+++||++++++ +|+.++||++++++. +..++.|-++|..
T Consensus 1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSEVSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCCcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 478999999999999999999999999999999998 468999999999986 5577777776643
No 112
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.74 E-value=7e-08 Score=73.07 Aligned_cols=62 Identities=16% Similarity=0.327 Sum_probs=54.2
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHH------HHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK------AVAEALESKF 304 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~------~av~~Lh~~f 304 (327)
+++|+|.+.++.+.|++.+++|+.|+++||+|+||+| ++.++||++++++.. .+++.|.++|
T Consensus 1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~sd~~~~~~~~~~l~~~~~~~ 68 (78)
T cd04933 1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEEL 68 (78)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEhhhhhhhhhHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999996 579999999999984 4666666655
No 113
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.68 E-value=2.8e-08 Score=85.57 Aligned_cols=83 Identities=25% Similarity=0.350 Sum_probs=69.8
Q ss_pred chHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecC
Q 020388 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205 (327)
Q Consensus 126 sD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~ 205 (327)
||..++.+|+.++|.++++.|||||||+.+|+ ++++++|+..|... |-..++|-+=.++.++++.+++.|+.
T Consensus 118 SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k~~m~~~Vvng~ 189 (212)
T COG2054 118 SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVKYKMNCRVVNGK 189 (212)
T ss_pred ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHHcCCceEEECCC
Confidence 69999999999999999999999999999765 58888887765533 66778888888899999999999987
Q ss_pred CCC----------CCceEEeC
Q 020388 206 NLS----------VPGIMICR 216 (327)
Q Consensus 206 ~~e----------~~GT~I~~ 216 (327)
.|+ .+||.|.+
T Consensus 190 ~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 190 EPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred CHHHHHHHHhccccceEEEeC
Confidence 664 35777754
No 114
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.65 E-value=1.5e-07 Score=70.73 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=51.7
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHH--HHHH-HHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK--AVAE-ALESKF 304 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~--~av~-~Lh~~f 304 (327)
+++|++.|.++.+.||+.+++|+.|+++||+|+||+| ++.++||+++.++.. ++++ +|-++|
T Consensus 1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~--s~~~iSftv~~~d~~~~~~~~~~l~~~l 65 (75)
T cd04932 1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT--SEISVALTLDNTGSTSDQLLTQALLKEL 65 (75)
T ss_pred CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee--cCCEEEEEEeccccchhHHHHHHHHHHH
Confidence 4789998888999999999999999999999999996 569999999998843 2443 454444
No 115
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=98.59 E-value=2.7e-07 Score=69.00 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=55.5
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHH-HHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA-VAEALESKFR 305 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~-av~~Lh~~f~ 305 (327)
++.|++.+.+|...|++.+++|+.|+++||+++||+| ++.++||++++++... .++.|.+++.
T Consensus 1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~isftv~~~~~~~~~l~~l~~el~ 64 (73)
T cd04934 1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVHVSMALHMENAEDTNLDAAVKDLQ 64 (73)
T ss_pred CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEehhhcChHHHHHHHHHHH
Confidence 4689999999999999999999999999999999996 5699999999987755 7777777764
No 116
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=98.55 E-value=3.7e-07 Score=65.50 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=53.9
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
.|++.|.+|.+.+++.+++|+.|+++||+++||++ ++.++||+++.++.++.++.|-+++
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEehhhhhHHHHHHHHhh
Confidence 57899999999999999999999999999999985 6799999999999888887776654
No 117
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.55 E-value=4.7e-07 Score=68.03 Aligned_cols=63 Identities=27% Similarity=0.384 Sum_probs=54.0
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEecccc--HHH-HHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKE--VKA-VAEALESKFR 305 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d--~~~-av~~Lh~~f~ 305 (327)
+.+|++.+.++.+.|++.+++|+.|+++||+|+||+| ++.++||++++++ ... .++.|-+++.
T Consensus 1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~~~~~~~~~~~~~~l~~el~ 66 (75)
T cd04935 1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLDPDPNGLDPDVLDALLDDLN 66 (75)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEeCcccccchHHHHHHHHHHH
Confidence 3689999999999999999999999999999999996 5699999999998 233 6666666654
No 118
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=98.55 E-value=4.6e-07 Score=66.58 Aligned_cols=62 Identities=34% Similarity=0.523 Sum_probs=54.8
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccccHHHHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
+++|+++| +.+.|++.+++|+.|+++||++++++|+.+ ..+++|++++++.+.+++.||+..
T Consensus 1 ~~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~~~~~~~l~~~~ 65 (75)
T cd04913 1 QAKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLEKLK 65 (75)
T ss_pred CeEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHHHHHHHHHHHHH
Confidence 46889987 678899999999999999999999998765 357999999999999999999943
No 119
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.53 E-value=4.2e-07 Score=63.94 Aligned_cols=57 Identities=35% Similarity=0.599 Sum_probs=50.7
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc---cEEEEEeccccHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEAL 300 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~---~sIs~~V~~~d~~~av~~L 300 (327)
++|+++| +.+.+++.+++|+.|+++||++++++|+.+. .+++|++++++.+++++.|
T Consensus 1 ~~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~~~~~~~~l 60 (61)
T cd04891 1 AQVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLEKALAIL 60 (61)
T ss_pred CEEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHHHHHHHHHh
Confidence 4688887 5788999999999999999999999997765 8899999999999988765
No 120
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=98.40 E-value=3.3e-06 Score=77.86 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=85.7
Q ss_pred HHHHHHhhcCCCceEEecCceec----CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388 90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~----~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i 165 (327)
+.|+.+++ .+.++|..|-=|. +.+|..-.=.--+-|.+++.||..++||.++|+||||+||-.= + -|+.+.+
T Consensus 175 ~~Ik~L~~--~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~-g-kp~q~~L 250 (312)
T COG0549 175 EAIKALLE--SGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNF-G-KPNQQAL 250 (312)
T ss_pred HHHHHHHh--CCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecC-C-Cccchhh
Confidence 66888888 7888888773121 1121100000013599999999999999999999999999752 2 2567899
Q ss_pred eecCHHHHHHHHhcC---CCcccHh---hHHHHHhCCCCEEEeecCCC-----CCCceEEe
Q 020388 166 RTLSYQEAWEMSYFG---ANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMIC 215 (327)
Q Consensus 166 ~~is~~ea~~l~~~g---~~v~~p~---a~~~a~~~~I~v~I~n~~~~-----e~~GT~I~ 215 (327)
++++.+|+++....| .+=|-|| |+....+.|=+.+|.+..+. -..||.|.
T Consensus 251 ~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~ 311 (312)
T COG0549 251 DRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIV 311 (312)
T ss_pred cccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEec
Confidence 999999998887643 5678896 66777777778888765321 13588874
No 121
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=98.28 E-value=4.7e-06 Score=61.15 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=48.0
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
++|+|.|. .+.|++.+++|+.|+++||+|+||++. ++ +++|+++.+|.+++...|.+
T Consensus 2 ~~vtv~~~--~~~~~~~a~if~~La~~~InvDmI~~~-~~-~isFtv~~~d~~~~~~il~~ 58 (67)
T cd04914 2 TQIKVKAK--DNENDLQQRVFKALANAGISVDLINVS-PE-EVIFTVDGEVAEKAVDILEK 58 (67)
T ss_pred eEEEEecC--CCCccHHHHHHHHHHHcCCcEEEEEec-CC-CEEEEEchhhHHHHHHHHHH
Confidence 67888874 456999999999999999999999876 34 79999999999998666544
No 122
>PLN02551 aspartokinase
Probab=98.22 E-value=6.6e-06 Score=83.37 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=59.4
Q ss_pred CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHH
Q 020388 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA 295 (327)
Q Consensus 230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~ 295 (327)
..+++|+..+|+++|+|.|.+|.+.+++++++|+.|+++||+|+||+ +|+.+|||++++.+...
T Consensus 355 ~~v~~It~~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe~sIs~~v~~~~~~~ 418 (521)
T PLN02551 355 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSISLTLDPSKLWS 418 (521)
T ss_pred CcccceecCCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccCCEEEEEEehhHhhh
Confidence 35899999999999999999999999999999999999999999998 46899999999998755
No 123
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=97.61 E-value=0.00027 Score=52.39 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=58.3
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
..|.+.+.+|.+.+|+.+++|+.|+++++++.+...++.+.+.++..+.+..++++..|.+.|..
T Consensus 2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~ 66 (71)
T cd04910 2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFPN 66 (71)
T ss_pred eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCcc
Confidence 45788999999999999999999999999999998877788888888888999999999998853
No 124
>PRK05925 aspartate kinase; Provisional
Probab=97.53 E-value=0.00049 Score=68.58 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH-HHHHHHHHHH
Q 020388 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV-KAVAEALESK 303 (327)
Q Consensus 230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~-~~av~~Lh~~ 303 (327)
..+++|+..+|+++|++.+.. ..+++++++|+.|+++||+|++++ +++.++||++++++. +.+++.|..+
T Consensus 289 ~~ik~It~~~~~~~i~v~~~~--~~~~~~~~if~~l~~~~I~vd~i~--s~~~sis~~i~~~~~~~~~~~~l~~~ 359 (440)
T PRK05925 289 PRIKALSLKQNQALWSVDYNS--LGLVRLEDVLGILRSLGIVPGLVM--AQNLGVYFTIDDDDISEEYPQHLTDA 359 (440)
T ss_pred CceEEEEEeCCEEEEEEecCC--cchhHHHHHHHHHHHcCCcEEEEe--ccCCEEEEEEechhccHHHHHHHHHH
Confidence 358999999999999997643 347788999999999999999986 346899999999876 4456655544
No 125
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0021 Score=48.28 Aligned_cols=70 Identities=10% Similarity=0.219 Sum_probs=54.1
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHH-HHHHHHHHHHhhhcCCCC
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA-VAEALESKFREALNAGRL 313 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~-av~~Lh~~f~~~~~~~~~ 313 (327)
+.|+|.-..|....|+..|+++.|.++||+++++. ++-.++|++++++++.. .++.+-.++..+++.+.+
T Consensus 2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~P--SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMP--SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred ceEehhHhhccchhcHHHHHHHHHHHcCCCEeeec--CCCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence 45666677787888999999999999999999997 56889999999997766 555555555555544443
No 126
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.98 E-value=0.0015 Score=46.49 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=44.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCCc-----cEEEEEeccccHHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~-----~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
+.+.||+++++++.|+++|+||.++.+..+. ..+.+..+..+.+++++.|++.
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEAL 64 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcc
Confidence 5688999999999999999999999987753 3455557778899999999874
No 127
>PRK09181 aspartate kinase; Validated
Probab=96.94 E-value=0.0025 Score=64.13 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=72.8
Q ss_pred CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccc--cHHHHHHHHHHHHHhh
Q 020388 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK--EVKAVAEALESKFREA 307 (327)
Q Consensus 230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~--d~~~av~~Lh~~f~~~ 307 (327)
..+++|+..+++++|++.|.+|.+.+++.+++|+.|+++||+|+|++ +++.++||+++.+ +.+++++.|++.|..+
T Consensus 318 ~~ik~It~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~--ss~~sis~~v~~~~~~~~~~~~~L~~~~~~~ 395 (475)
T PRK09181 318 PRVEIIAGSDKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKA--TNANTITHYLWGSLKTLKRVIAELEKRYPNA 395 (475)
T ss_pred ccceeEeccCCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEE--ecCcEEEEEEcCChHHHHHHHHHHHHhcCCc
Confidence 34789999999999999999999999999999999999999999997 4589999999988 3677788888777422
Q ss_pred -hcCCCCce-eEEEEeecc
Q 020388 308 -LNAGRLSQ-FSASILSQD 324 (327)
Q Consensus 308 -~~~~~~~~-~~~~~~~~~ 324 (327)
+. .+. -.++++|..
T Consensus 396 ~i~---~~~~a~VsvVG~g 411 (475)
T PRK09181 396 EVT---VRKVAIVSAIGSN 411 (475)
T ss_pred eEE---ECCceEEEEeCCC
Confidence 21 122 447777753
No 128
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=96.86 E-value=0.0037 Score=48.18 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=54.7
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEeccccHHHHHHHHHHHHHhhh
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKEVKAVAEALESKFREAL 308 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~~d~~~av~~Lh~~f~~~~ 308 (327)
..++|++.|. ++||+.+.+++.|+++|+||.=|||+.- -.++-++|.-.+......++.+++..+.
T Consensus 2 ~~avITV~Gk---Dr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~ 69 (90)
T COG3830 2 MRAVITVIGK---DRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEG 69 (90)
T ss_pred ceEEEEEEcC---CCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHH
Confidence 4689999994 6899999999999999999999998763 4678888888877777888888775543
No 129
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.032 Score=45.14 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
+....|....+-....+.|.---+-+|+++.+.+.|+++||.|..+|.- ..=-++|+++|+++|+++|.+.
T Consensus 52 ~vp~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavSty---dtDhiLVr~~dLekAv~~L~ea 122 (128)
T COG3603 52 RVPDVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTY---DTDHILVREEDLEKAVKALEEA 122 (128)
T ss_pred cCCcceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEec---cCceEEEehhhHHHHHHHHHHc
Confidence 4556778888999999999766678999999999999999999999844 2234789999999999999774
No 130
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.08 E-value=0.033 Score=40.87 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=43.0
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccccHHHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
.+.||+++++++.|++.|+++.++++... ...++|.++..+.+..++.|.+.+
T Consensus 8 ~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L 63 (76)
T cd04888 8 EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEEL 63 (76)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHH
Confidence 46799999999999999999999987432 366999998888876666666655
No 131
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=96.06 E-value=0.013 Score=58.34 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=83.7
Q ss_pred hhcHHHHHHHHHHHHHHcCCceeEEccccee--eccCC--------CCCC----CCCCchHHHHHHHHHhhcCCCceEEe
Q 020388 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPT--------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIA 106 (327)
Q Consensus 41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~--~~~~~--------~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv 106 (327)
-.||.--. +...|.++|-.+++.+..... .++.+ .|+. .++|. ++++.+++ .|.+|++
T Consensus 170 ~~~E~n~~--lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~----d~i~~l~~--~G~mp~L 241 (520)
T KOG2436|consen 170 VSLEANLN--LVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDV----DRIRHLLD--AGSMPLL 241 (520)
T ss_pred chhhhhhH--HHHHHHHhhceeccccccccccceeecccccccccceeeeecccceech----hhhhhhhh--CCCchhe
Confidence 35776333 778899999999887766332 11111 1221 34555 77888887 8899998
Q ss_pred cCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHH
Q 020388 107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177 (327)
Q Consensus 107 ~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~ 177 (327)
.. .+.+..|++++++ +|..|..+|..|+|+++++.+|+ |..-. .+.+.+..++.+|...+.
T Consensus 242 ~s-la~TaSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~-g~~l~-----e~ge~~S~l~l~~e~~~l 302 (520)
T KOG2436|consen 242 RS-LAATASGQVLNVN---ADEVAGELALALGPDKLILLMDK-GRILK-----ENGEDISSLILQEEDAGL 302 (520)
T ss_pred hh-hcccCccceEEee---HHHHhhHHHhccCcceeEEeccc-ccccc-----cCcccccccccchhHhhh
Confidence 87 4888999999885 89999999999999999999997 44432 234556666655554443
No 132
>PRK08841 aspartate kinase; Validated
Probab=95.95 E-value=0.025 Score=55.69 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=50.0
Q ss_pred CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHH
Q 020388 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAV 296 (327)
Q Consensus 230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~a 296 (327)
..+++|+..+|+++|++.|. ..+++|+.|+++||+++++++ +..+++|++++.+.+++
T Consensus 247 ~~i~~i~~~~~~~~i~v~~~-------~~~~i~~~l~~~~i~v~~i~~--~~~~~~~~v~~~~~~~~ 304 (392)
T PRK08841 247 QAVCGIALQRDLALIEVESE-------SLPSLTKQCQMLGIEVWNVIE--EADRAQIVIKQDACAKL 304 (392)
T ss_pred CcEEEEEEeCCeEEEEeccc-------hHHHHHHHHHHcCCCEEEEEe--cCCcEEEEECHHHHHHH
Confidence 46999999999999999762 368999999999999999985 56889999998877664
No 133
>PRK04435 hypothetical protein; Provisional
Probab=95.75 E-value=0.12 Score=43.75 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=55.0
Q ss_pred ecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc---cEEEEEeccccHHHHHHHHHHHHHhhhcCCCCc
Q 020388 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEALESKFREALNAGRLS 314 (327)
Q Consensus 238 ~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~---~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~ 314 (327)
....+.+.+.. .+.||+++++++.+++.|+||..|+|+.+. .+++|.++-.+....++.|-+.+. .++
T Consensus 66 ~~r~vtL~i~l---~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~------~i~ 136 (147)
T PRK04435 66 KGKIITLSLLL---EDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLR------NLD 136 (147)
T ss_pred CCcEEEEEEEE---ecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHH------cCC
Confidence 34566677764 567999999999999999999999986532 568888888887755666655552 222
Q ss_pred e-eEEEEeec
Q 020388 315 Q-FSASILSQ 323 (327)
Q Consensus 315 ~-~~~~~~~~ 323 (327)
- .+++|+|+
T Consensus 137 gV~~V~i~~~ 146 (147)
T PRK04435 137 GVEKVELIGM 146 (147)
T ss_pred CcEEEEEEec
Confidence 2 35666664
No 134
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=95.26 E-value=0.11 Score=37.40 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=39.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
+.+.||.++++.+.|+++|+||..+.....+....+-+.-++.+++.+.|.+.
T Consensus 8 v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~ 60 (66)
T cd04908 8 LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEA 60 (66)
T ss_pred EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHC
Confidence 67889999999999999999998766433333455555567777888887653
No 135
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=94.64 E-value=0.13 Score=38.21 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=33.6
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEec
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVP 289 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~ 289 (327)
.+|++.|. +.||+.+++++.|+++|.||.-+.|..- ..++.+.|.
T Consensus 3 ~vItv~G~---DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~ 49 (76)
T PF13740_consen 3 LVITVVGP---DRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVS 49 (76)
T ss_dssp EEEEEEEE-----TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEec---CCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEE
Confidence 57999994 6899999999999999999999888764 344444443
No 136
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.55 E-value=0.14 Score=33.51 Aligned_cols=48 Identities=25% Similarity=0.450 Sum_probs=37.8
Q ss_pred CcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccc-cHHHHHHHH
Q 020388 253 GVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK-EVKAVAEAL 300 (327)
Q Consensus 253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~-d~~~av~~L 300 (327)
+.++..+++++.|+++++++..+.+... ...+++.++.. +.+.+++.|
T Consensus 7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred CCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence 4689999999999999999999986543 36788888877 566665554
No 137
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=94.36 E-value=0.22 Score=43.42 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=49.7
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC----CccEEEEEeccc--cHHHHHHHHHHHHHhhhcCCCCc
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS----SEHSVCFAVPEK--EVKAVAEALESKFREALNAGRLS 314 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~----s~~sIs~~V~~~--d~~~av~~Lh~~f~~~~~~~~~~ 314 (327)
.+++.+ .+.||+++|+.+.|+.+|+||..++.+. ...+++++++.. ..+++.+.|++ +.+.++-+.+.
T Consensus 4 ~isvlv---~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~K-LidVl~V~~~~ 77 (174)
T CHL00100 4 TLSVLV---EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYK-LVNILKVQDIT 77 (174)
T ss_pred EEEEEE---eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHH-HhHhhEEEecC
Confidence 366775 4789999999999999999999999765 245788889875 35666777766 34444444433
No 138
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.27 E-value=0.24 Score=36.65 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=39.2
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEE--eccc-cHHHHHHHHHH
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFA--VPEK-EVKAVAEALES 302 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~--V~~~-d~~~av~~Lh~ 302 (327)
+|++.| .+.||+.+++.+.|+++|+||.-++|..- ...+.+. +++. +...+.+.|..
T Consensus 1 ~vtv~G---~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~ 62 (75)
T cd04870 1 LITVTG---PDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLF 62 (75)
T ss_pred CEEEEc---CCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHH
Confidence 378888 47899999999999999999999875542 2344444 4443 44444444444
No 139
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=93.77 E-value=0.26 Score=37.69 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=39.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEec-cc--cHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVP-EK--EVKAVAEALES 302 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~-~~--d~~~av~~Lh~ 302 (327)
..+.||+++|+...|+..|.||..++-+.++ .++++++. .+ ..+++.+.|++
T Consensus 9 VeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~K 67 (84)
T PRK13562 9 VADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQ 67 (84)
T ss_pred EECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999999988764 37888885 22 22444444444
No 140
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=93.34 E-value=0.16 Score=49.37 Aligned_cols=75 Identities=16% Similarity=0.329 Sum_probs=65.7
Q ss_pred hcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHH--HHH-HHHHHHH
Q 020388 228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK--AVA-EALESKF 304 (327)
Q Consensus 228 ~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~--~av-~~Lh~~f 304 (327)
.+...+.|+.++|+.++.|-...|....|+++++|..|.+.||.|+.|+ +||.+||..++.++.. +++ +.||+.+
T Consensus 380 ~k~~~TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvva--TSEV~iSltL~~~~~~sreliq~~l~~a~ 457 (559)
T KOG0456|consen 380 SKAGLTSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVA--TSEVSISLTLDPSKLDSRELIQGELDQAV 457 (559)
T ss_pred hhccceEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEE--eeeEEEEEecChhhhhhHHHHHhhHHHHH
Confidence 3457899999999999999999999999999999999999999999998 7899999999887665 344 6777765
No 141
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.69 E-value=0.46 Score=34.86 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.2
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
+|++.| .+.||+.+++.+.|+++|+||.-+++.
T Consensus 1 ii~v~g---~D~~Giv~~it~~l~~~g~nI~~~~~~ 33 (74)
T cd04875 1 ILTLSC---PDRPGIVAAVSGFLAEHGGNIVESDQF 33 (74)
T ss_pred CEEEEc---CCCCCHHHHHHHHHHHcCCCEEeeeee
Confidence 367887 468999999999999999999999876
No 142
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=92.66 E-value=0.48 Score=37.19 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=36.2
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEec
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVP 289 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~ 289 (327)
..|++. ..+.||+++|+...|+..|.||+.++-+.++ .++++++.
T Consensus 9 ~tisvl---v~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~ 57 (96)
T PRK08178 9 VILELT---VRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN 57 (96)
T ss_pred EEEEEE---EECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc
Confidence 445655 3578999999999999999999999877653 56777776
No 143
>PRK00194 hypothetical protein; Validated
Probab=92.23 E-value=0.35 Score=36.95 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=31.4
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS 279 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~ 279 (327)
...|++.|. +.||+.+++.+.|+++|+||.-+++..
T Consensus 3 ~~~ltv~g~---DrpGiva~vt~~la~~g~nI~~~~~~~ 38 (90)
T PRK00194 3 KAIITVIGK---DKVGIIAGVSTVLAELNVNILDISQTI 38 (90)
T ss_pred eEEEEEEcC---CCCCHHHHHHHHHHHcCCCEEehhhHh
Confidence 357888884 689999999999999999999998765
No 144
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=92.11 E-value=0.39 Score=39.03 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=69.1
Q ss_pred hhHHHHHhCCCCEEEeecCCCCCCce--EEeCCCCCCcchhh-hhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHH
Q 020388 187 RTIIPVMRYDIPIVIRNIFNLSVPGI--MICRPPVDENEDEQ-IIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFG 263 (327)
Q Consensus 187 ~a~~~a~~~~I~v~I~n~~~~e~~GT--~I~~~~~~~~~~~~-~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~ 263 (327)
.++..+.++||.++-.+..+...-|. .|..++. . ..+ ... .+++++. -.+++-.|.+.||-++++.+
T Consensus 19 ~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d--~-A~~~Lee---~gF~Vr~----~dVlaVEmeD~PG~l~~I~~ 88 (142)
T COG4747 19 SVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD--E-AHSVLEE---AGFTVRE----TDVLAVEMEDVPGGLSRIAE 88 (142)
T ss_pred HHHHHHHHcCCceEEEEeccccCcceEEEEcCChH--H-HHHHHHH---CCcEEEe----eeEEEEEecCCCCcHHHHHH
Confidence 46677788999988776654322342 2223221 0 000 011 1223221 12344458899999999999
Q ss_pred HHHhCCCCEEEEEecCCc-cEEEEEeccccHHHHHHHHHHH
Q 020388 264 AVKDVGANVIMISQASSE-HSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 264 ~L~~~gI~V~~Isq~~s~-~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
.|.+++||++.|-...++ ..--++++-+|.+++..+|.+.
T Consensus 89 vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~ 129 (142)
T COG4747 89 VLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDA 129 (142)
T ss_pred HHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHc
Confidence 999999999998755553 5556778889999999999875
No 145
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.05 E-value=0.45 Score=33.38 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=35.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCCc--cEEEEEeccccHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~--~sIs~~V~~~d~~~av~~Lh~ 302 (327)
+.+.||.++++.+.|+++|+||..+.+.... ....+.+.-++.+++.+.|.+
T Consensus 6 ~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 6 VPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred eCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH
Confidence 5688999999999999999999877543322 223334444446667666655
No 146
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.88 E-value=0.88 Score=34.60 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=40.1
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc--ccHHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE--KEVKAVAEALES 302 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~--~d~~~av~~Lh~ 302 (327)
.+|++.|. +.||+.+++.+.|+++|+||.-++|..- ...+.+-++. .+...+...|..
T Consensus 2 ~vl~i~g~---D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGK---DRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEE 65 (88)
T ss_pred EEEEEEcC---CCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 46788884 6899999999999999999999987653 1234444554 234444444433
No 147
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=91.83 E-value=0.77 Score=34.15 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=30.7
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS 279 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~ 279 (327)
-+|++.| ++.||+.+++.+.|+++|.||.-++|..
T Consensus 2 ~iltv~g---~Dr~GiVa~vs~~la~~g~nI~d~~q~~ 36 (77)
T cd04893 2 LVISALG---TDRPGILNELTRAVSESGCNILDSRMAI 36 (77)
T ss_pred EEEEEEe---CCCChHHHHHHHHHHHcCCCEEEceeeE
Confidence 3678888 4789999999999999999999988765
No 148
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=91.79 E-value=1.1 Score=33.15 Aligned_cols=56 Identities=23% Similarity=0.365 Sum_probs=39.1
Q ss_pred EEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc----------cEEEEEeccc-cHHHHHHHHHH
Q 020388 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----------HSVCFAVPEK-EVKAVAEALES 302 (327)
Q Consensus 244 IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----------~sIs~~V~~~-d~~~av~~Lh~ 302 (327)
|++.|. +.||+.+++.+.|+++|+||.-+++.+.+ ..+.+-+++. +..+..+.|+.
T Consensus 2 l~v~g~---D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~ 68 (81)
T cd04869 2 VEVVGN---DRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEE 68 (81)
T ss_pred EEEEeC---CCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHH
Confidence 567773 58999999999999999999999874433 2444556643 44555544544
No 149
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=91.77 E-value=0.45 Score=42.11 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=39.0
Q ss_pred cCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEecc
Q 020388 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPE 290 (327)
Q Consensus 239 ~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~ 290 (327)
....+|+++|. +.||+.+++.+.|+++|.||.=+++..- ++.+.++|..
T Consensus 6 ~~~lviTviG~---DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~ 56 (190)
T PRK11589 6 QHYLVITALGA---DRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG 56 (190)
T ss_pred ccEEEEEEEcC---CCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC
Confidence 35688999994 6899999999999999999998876543 5566666644
No 150
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=91.63 E-value=0.79 Score=31.48 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCCc-cEEEEEeccccHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASSE-HSVCFAVPEKEVKAVAEAL 300 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~-~sIs~~V~~~d~~~av~~L 300 (327)
+.+.||.++++.+.|.++|+||..+.-.... ..-.+.+.=++.++|.+.|
T Consensus 5 ~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 5 VENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred eCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 5678999999999999999999776643332 2222223334467776654
No 151
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.19 E-value=1.9 Score=30.94 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=39.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
+.+.||.++++.+.|+++|+|+..+..... ...+.|-++..+.+.+.+.|.+.
T Consensus 8 ~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~ 64 (72)
T cd04883 8 VPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred ECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence 678899999999999999999987753322 23456666666766777777654
No 152
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=91.05 E-value=0.81 Score=34.37 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=36.7
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEecc--ccHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPE--KEVKAVAEALES 302 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~--~d~~~av~~Lh~ 302 (327)
.+.||+++|+...++..|.||..++-+.++ .++.+++.. ...+++.+.|++
T Consensus 10 ~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~K 66 (76)
T PRK06737 10 HNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKK 66 (76)
T ss_pred ecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhC
Confidence 578999999999999999999999977643 356666543 334444444443
No 153
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=90.62 E-value=1.1 Score=33.61 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=33.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE 290 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~ 290 (327)
..+.||+++|+.+.++..|.||..++-+.. -.++++++.+
T Consensus 10 v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~ 53 (76)
T PRK11152 10 ARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS 53 (76)
T ss_pred EECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC
Confidence 357899999999999999999999997763 2578888853
No 154
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.42 E-value=1.4 Score=31.11 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=24.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
+.+.||.++++.+.+++.|++|..+.+.
T Consensus 5 ~~d~~G~L~~i~~~i~~~~~nI~~i~~~ 32 (73)
T cd04886 5 LPDRPGQLAKLLAVIAEAGANIIEVSHD 32 (73)
T ss_pred eCCCCChHHHHHHHHHHcCCCEEEEEEE
Confidence 4578999999999999999999877654
No 155
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.35 E-value=1.2 Score=31.87 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=36.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc-ccHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE-KEVKAVAEALES 302 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~-~d~~~av~~Lh~ 302 (327)
+.+.||.++++.+.|+++|+++..+..... ...+.+.++. ++.+++.+.|.+
T Consensus 8 ~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 8 VPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred cCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 568899999999999999999987654332 3345566652 356666666654
No 156
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.54 E-value=2.2 Score=29.88 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
.+.||.++++.+.|+++|+++..+.+... ...+.+.++..+..++++.|.+
T Consensus 7 ~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~ 61 (71)
T cd04903 7 KDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKK 61 (71)
T ss_pred CCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHc
Confidence 47899999999999999999988764431 2235677777777777766654
No 157
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=87.23 E-value=2.2 Score=36.72 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=41.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEec--cccHHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVP--EKEVKAVAEALESK 303 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~--~~d~~~av~~Lh~~ 303 (327)
..+.||+++++...|+++|+||..++-+.++ ..+.+.+. +..++++.+.|++.
T Consensus 9 veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KL 67 (161)
T PRK11895 9 VENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKL 67 (161)
T ss_pred EcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhcc
Confidence 4578999999999999999999988866553 34667775 34567777777774
No 158
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=86.76 E-value=3.9 Score=38.52 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=43.3
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC--C--ccEEEEEecc-------ccHHHHHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS--S--EHSVCFAVPE-------KEVKAVAEALESKFR 305 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~--s--~~sIs~~V~~-------~d~~~av~~Lh~~f~ 305 (327)
..+|+++|. +.||+.+++.+.|+++|+||.-+++.. . ...+.+.+.- ++++++++.|-+++.
T Consensus 6 ~~vitv~G~---DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK06027 6 RYVLTLSCP---DRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFE 78 (286)
T ss_pred eEEEEEECC---CCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 467899984 689999999999999999999988765 1 2333333433 344555555555544
No 159
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=86.39 E-value=2.5 Score=30.93 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=33.9
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEec------cccHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVP------EKEVKAVAEALES 302 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~------~~d~~~av~~Lh~ 302 (327)
.+.||.++++++.|+++|+|+..|..-.. .-...|.++ +.+.+++++.|.+
T Consensus 7 ~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 7 KNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999953221 222333332 3345556666554
No 160
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=86.14 E-value=2 Score=40.33 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=30.9
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS 279 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~ 279 (327)
+|+++| .+.||+.+++.+.|+++|+||.-++|..
T Consensus 2 ~itv~g---~D~~GIVA~Vt~~La~~g~NI~d~sq~~ 35 (280)
T TIGR00655 2 ILLVSC---PDQKGLVAAISTFIAKHGANIISNDQHT 35 (280)
T ss_pred EEEEEC---CCCCChHHHHHHHHHHCCCCEEeeeEEE
Confidence 578888 4789999999999999999999999876
No 161
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=86.03 E-value=3.5 Score=38.88 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=31.7
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
-++|+++| .+.||+.+++.+.|+++|+||.-++|.
T Consensus 9 ~~iitv~G---~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLAC---PSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEEC---CCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 46899998 478999999999999999999999984
No 162
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=85.08 E-value=5.2 Score=37.71 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=32.0
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
+-..|+++| .+.||+.+++.+.|+++|+||.-++|.
T Consensus 6 ~~~vitv~G---~DrpGIVa~VT~~La~~~vNI~dls~~ 41 (286)
T PRK13011 6 DTFVLTLSC---PSAAGIVAAVTGFLAEHGCYITELHSF 41 (286)
T ss_pred ceEEEEEEe---CCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence 346789998 478999999999999999999999974
No 163
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.93 E-value=7 Score=28.93 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=41.2
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--c-cEEEEEecccc----HHHHHHHHHHHHHhhhcCC
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--E-HSVCFAVPEKE----VKAVAEALESKFREALNAG 311 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~-~sIs~~V~~~d----~~~av~~Lh~~f~~~~~~~ 311 (327)
++.|.+ ++.||+++++..+|+.+|++|....-.+. + .-=+|.|.+.+ .++-.+.+.+.+...+...
T Consensus 2 ~~ei~~---~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~ 74 (76)
T cd04927 2 LLKLFC---SDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDS 74 (76)
T ss_pred EEEEEE---CCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchh
Confidence 456665 47899999999999999999988543321 1 22245554433 2244455666555555443
No 164
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=84.69 E-value=3.4 Score=35.39 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=37.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccccHHHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
..+.||+++++.+.|+++|+||..++-+.++ ..+++.+.. + ++.++.|.+.+
T Consensus 8 ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-d-~~~i~qi~kQl 63 (157)
T TIGR00119 8 VENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-D-DKVLEQITKQL 63 (157)
T ss_pred EcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-C-HHHHHHHHHHH
Confidence 4578999999999999999999988866553 246777765 2 44555555544
No 165
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=83.66 E-value=6.2 Score=29.07 Aligned_cols=58 Identities=16% Similarity=0.332 Sum_probs=40.1
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
+.+.|.+ .+.||+++++.+.+++.|+||..++.... ...+.|.+.-.+.+.+-..+++
T Consensus 7 ~~l~i~~---~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~ 68 (80)
T PF13291_consen 7 VRLRIEA---EDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRK 68 (80)
T ss_dssp EEEEEEE---E--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEE---EcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHH
Confidence 4566665 46899999999999999999999987653 2356666666666655555544
No 166
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.04 E-value=6.2 Score=27.64 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=30.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccc
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEK 291 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~ 291 (327)
+.+.||.++++.+.|+++++++..+.+... ...+.+.++..
T Consensus 7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~ 50 (72)
T cd04874 7 AEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV 50 (72)
T ss_pred eCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc
Confidence 357899999999999999999987765432 23355556554
No 167
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.98 E-value=11 Score=27.62 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=33.3
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEecc
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPE 290 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~ 290 (327)
+|.|.|. +.||+++++..+|+.+|+||......+. ..--.|.|.+
T Consensus 2 ~~~v~~~---Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d 48 (74)
T cd04925 2 AIELTGT---DRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD 48 (74)
T ss_pred EEEEEEC---CCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc
Confidence 5778874 6899999999999999999988543332 3445566643
No 168
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=82.40 E-value=5.3 Score=27.76 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALE 301 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh 301 (327)
..+.+|.++++.+.|+++|+++..+..... ...+.|.++.....++++.|.
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~ 60 (71)
T cd04879 6 HKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELK 60 (71)
T ss_pred ecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHH
Confidence 357899999999999999999987764432 223555665544444444443
No 169
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=81.84 E-value=8.4 Score=35.70 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++..++..|.++|++..... ++-| +...+.+.++...+ .-++.|++|-+|.+.+
T Consensus 22 Na~~la~~L~~~G~~v~~~~-----~VgD--------~~~~I~~~l~~a~~--r~D~vI~tGGLGPT~D----------- 75 (255)
T COG1058 22 NAAFLADELTELGVDLARIT-----TVGD--------NPDRIVEALREASE--RADVVITTGGLGPTHD----------- 75 (255)
T ss_pred hHHHHHHHHHhcCceEEEEE-----ecCC--------CHHHHHHHHHHHHh--CCCEEEECCCcCCCcc-----------
Confidence 46678999999999876643 2222 24456677777776 4678888887776665
Q ss_pred hHHHHHHHHHhCCce
Q 020388 127 DFSAAIMGALLRAHQ 141 (327)
Q Consensus 127 D~~A~~lA~~l~A~~ 141 (327)
|.|+-.+|++|+-+.
T Consensus 76 DiT~e~vAka~g~~l 90 (255)
T COG1058 76 DLTAEAVAKALGRPL 90 (255)
T ss_pred HhHHHHHHHHhCCCc
Confidence 999999999999544
No 170
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=81.39 E-value=8.3 Score=28.08 Aligned_cols=54 Identities=7% Similarity=0.169 Sum_probs=38.1
Q ss_pred EEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHH
Q 020388 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301 (327)
Q Consensus 244 IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh 301 (327)
+.|.+ .+.+|+++.+...+++.|+|+..+...+. ..+.+.+.-.+...+-..++
T Consensus 3 l~I~~---~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~~~~~L~~li~ 56 (74)
T cd04877 3 LEITC---EDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTIEFEKLQTLMP 56 (74)
T ss_pred EEEEE---EccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEecCHHHHHHHHH
Confidence 34554 36799999999999999999999986543 33666666666665444443
No 171
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.82 E-value=10 Score=26.88 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=35.1
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccH---HHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEV---KAVAEALES 302 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~---~~av~~Lh~ 302 (327)
.+.||.++++.+.|++.|+++.-+.+... ...+.+++...+. +.+++.|++
T Consensus 8 ~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~ 65 (79)
T cd04881 8 KDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEA 65 (79)
T ss_pred CCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHc
Confidence 47899999999999999999998875432 2346665554444 444444443
No 172
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.68 E-value=13 Score=27.06 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=26.3
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEE
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Is 276 (327)
.|.|.+ ++.||+++++.++|+.+|++|....
T Consensus 3 ~i~v~~---~Dr~gLl~~i~~~l~~~~l~I~~A~ 33 (73)
T cd04900 3 EVFIYT---PDRPGLFARIAGALDQLGLNILDAR 33 (73)
T ss_pred EEEEEe---cCCCCHHHHHHHHHHHCCCCeEEeE
Confidence 456665 4789999999999999999999854
No 173
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=80.66 E-value=5.6 Score=35.18 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=46.4
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC----------ccEEEEEeccc-cHHHHHHHHHHHHHhhhcC
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS----------EHSVCFAVPEK-EVKAVAEALESKFREALNA 310 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----------~~sIs~~V~~~-d~~~av~~Lh~~f~~~~~~ 310 (327)
..|+++|. +.||+..++-+.|+++||||.-.+.... ...+.+-+|.. +...+-..|.+ |..+++-
T Consensus 96 ~~v~v~G~---DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~-l~~eL~v 171 (190)
T PRK11589 96 VWVQVEVA---DSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKA-LCTELNA 171 (190)
T ss_pred EEEEEEEC---CCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHH-HHHHhCc
Confidence 67889984 6899999999999999999987663321 23455556654 23333333332 3344443
Q ss_pred C-CCceeEEE
Q 020388 311 G-RLSQFSAS 319 (327)
Q Consensus 311 ~-~~~~~~~~ 319 (327)
+ .+++++++
T Consensus 172 d~~l~~~~~~ 181 (190)
T PRK11589 172 QGSINVVNYS 181 (190)
T ss_pred eEEEEEeecc
Confidence 3 45666553
No 174
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=80.63 E-value=6.5 Score=27.41 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=30.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE 290 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~ 290 (327)
..+.||.++++...|+++++++..+.+... ...+.|.+..
T Consensus 7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 7 VENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 347899999999999999999998876432 2346666655
No 175
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=80.49 E-value=1.8 Score=32.87 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=29.1
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
+|+++|..+ .++..+++-+.|+++|+||.-|++=
T Consensus 1 ivtvlg~~~--~a~~ia~Vs~~lA~~~~NI~~I~~l 34 (84)
T cd04871 1 IVTLLGRPL--TAEQLAAVTRVVADQGLNIDRIRRL 34 (84)
T ss_pred CEEEEcCcC--CHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 478998644 6899999999999999999988863
No 176
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=80.15 E-value=3.5 Score=29.53 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc--ccHHHHHHHHHH
Q 020388 253 GVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE--KEVKAVAEALES 302 (327)
Q Consensus 253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~--~d~~~av~~Lh~ 302 (327)
+.||++.|+...+...|.||..++-+.+ -..+++++.. ...+.+.+.|++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhc
Confidence 4689999999999999999999987663 3566666665 344555555544
No 177
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.84 E-value=10 Score=27.16 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=37.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccccHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
..+.||.++++.+.+++.|+||..+..... ...+.|.+.-.+.+.+-+.+++
T Consensus 6 ~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~ 60 (74)
T cd04887 6 LPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAA 60 (74)
T ss_pred eCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHH
Confidence 357899999999999999999987764331 3346666766666666655554
No 178
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.51 E-value=8.9 Score=28.41 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=35.3
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCCc---cEEEEEe----ccccHHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAV----PEKEVKAVAEALESK 303 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~---~sIs~~V----~~~d~~~av~~Lh~~ 303 (327)
.+.||.++++++.|+.+|||+..|-.-++. -...|.| ..++++++++.|++.
T Consensus 8 ~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~~ 66 (74)
T cd04929 8 KNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKRE 66 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHHh
Confidence 467999999999999999999999743331 2233333 334556666666553
No 179
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=79.40 E-value=4.6 Score=30.94 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=26.3
Q ss_pred HHHHHHhhcCCCceEEecCceecCCCCCeee--ec--CCcchHHHHHHHHHhCCceEE
Q 020388 90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LK--RDGSDFSAAIMGALLRAHQVT 143 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~--lg--rggsD~~A~~lA~~l~A~~l~ 143 (327)
+.+..++..+...=+| ++.+++|.... +| +||++.+|-.+|..|++..++
T Consensus 26 R~iap~l~dK~~DPaV----vvvde~g~~vIplL~GH~GGan~lA~~iA~~lga~~Vi 79 (84)
T PF11760_consen 26 RAIAPLLKDKDTDPAV----VVVDEDGRFVIPLLGGHRGGANELARQIAELLGAQPVI 79 (84)
T ss_dssp HHHHHH---TTT--EE----EEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT-EE--
T ss_pred HHhChhhcccCCCCCE----EEEeCCCCEEEEeccCCcchHHHHHHHHHHHhCCEEEe
Confidence 5556666543334445 36688887433 44 888999999999999996543
No 180
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=78.73 E-value=10 Score=28.05 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=34.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEec------cccHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVP------EKEVKAVAEALES 302 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~------~~d~~~av~~Lh~ 302 (327)
+.+.||.++++.+.|+++|||+..+..-.. ...+.|.|+ .++..+++..|.+
T Consensus 8 ~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 8 LPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred ECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 346799999999999999999987753322 233555543 2344455555544
No 181
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=78.40 E-value=9.4 Score=28.01 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCCc---cEEEEEe----ccccHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAV----PEKEVKAVAEALES 302 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~---~sIs~~V----~~~d~~~av~~Lh~ 302 (327)
.+.||.++++++.++.+|||+--|..-++. -.-.|.| ..++++++++.|.+
T Consensus 8 ~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 8 KEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 457999999999999999999998633322 2233333 33444555555544
No 182
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=77.34 E-value=2.4 Score=30.07 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEeccccHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
..+.||+++++.+.|+++|+|+..+...+. ...+.+.+...+.+.+++.|.+
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~~l~~li~~l~~ 59 (69)
T cd04901 6 HKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSEVSEELLEALRA 59 (69)
T ss_pred ecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCCCCHHHHHHHHc
Confidence 357899999999999999999877654331 2334555666677777776654
No 183
>PRK08577 hypothetical protein; Provisional
Probab=77.21 E-value=15 Score=30.34 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=29.6
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEe
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq 277 (327)
+.+.+.+.+ .+.||+++++.+.|+++++++..+++
T Consensus 55 ~~~~I~V~~---~Dr~GvLa~I~~~l~~~~inI~~i~~ 89 (136)
T PRK08577 55 KLVEIELVV---EDRPGVLAKITGLLAEHGVDILATEC 89 (136)
T ss_pred cEEEEEEEE---cCCCCHHHHHHHHHHHCCCCEEEEEE
Confidence 467788885 47899999999999999999987654
No 184
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=77.09 E-value=5.8 Score=34.17 Aligned_cols=52 Identities=13% Similarity=0.261 Sum_probs=43.4
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc--ccHHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE--KEVKAVAEALESK 303 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~--~d~~~av~~Lh~~ 303 (327)
.+.||+++++...|+..|.|+.+++-+.. ..++++++.. ...+++.+.||+.
T Consensus 12 ~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kL 69 (163)
T COG0440 12 ENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKL 69 (163)
T ss_pred ECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhh
Confidence 47899999999999999999999987765 3578888877 3388888888885
No 185
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=75.60 E-value=20 Score=24.93 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=32.4
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEeccc
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEK 291 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~~ 291 (327)
.|.|.+ .+.||+++++...|+++|++|..+...+. .....|.+...
T Consensus 2 ~l~i~~---~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~ 49 (70)
T cd04873 2 VVEVYA---PDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS 49 (70)
T ss_pred EEEEEe---CCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC
Confidence 355664 47899999999999999999987665443 33445555443
No 186
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.15 E-value=15 Score=26.39 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=25.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQAS 279 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~ 279 (327)
+.+.||.++++.+.|+++|+||..+.+..
T Consensus 6 ~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 6 LEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 67899999999999999999998776543
No 187
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.73 E-value=31 Score=25.50 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=39.9
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEeccccH-----HHHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKEV-----KAVAEALESKF 304 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~~d~-----~~av~~Lh~~f 304 (327)
.+|.|.+ .+.||+++++.++|.+.|++|....-++. ...=.|.|.+.+. ++..+.|.+.+
T Consensus 2 Tviev~a---~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 2 TLVKVDS---ARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEEE---CCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 3566665 57899999999999999999998765443 2233466655542 34455555543
No 188
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.65 E-value=14 Score=28.52 Aligned_cols=52 Identities=12% Similarity=0.202 Sum_probs=35.2
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCCc---cEEEEEec-----cccHHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVP-----EKEVKAVAEALESK 303 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~---~sIs~~V~-----~~d~~~av~~Lh~~ 303 (327)
.+.||.+.++++.|+++|||+..|..-++. -...|.|+ +..+.+++..|++.
T Consensus 22 ~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~ 81 (90)
T cd04931 22 KEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRND 81 (90)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHH
Confidence 457999999999999999999999743331 22344443 33445566666553
No 189
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=72.36 E-value=8.8 Score=27.27 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEE
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMIS 276 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Is 276 (327)
..+.||..+++.+.|+++|+|+..+.
T Consensus 6 ~~d~~G~l~~i~~~l~~~~inI~~~~ 31 (73)
T cd04902 6 NTDRPGVIGKVGTILGEAGINIAGMQ 31 (73)
T ss_pred eCCCCCHHHHHHHHHHHcCcChhheE
Confidence 35789999999999999999997553
No 190
>PRK08198 threonine dehydratase; Provisional
Probab=71.14 E-value=21 Score=35.03 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=41.5
Q ss_pred ecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC-------CccEEEEEeccccHH
Q 020388 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS-------SEHSVCFAVPEKEVK 294 (327)
Q Consensus 238 ~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~-------s~~sIs~~V~~~d~~ 294 (327)
....+.+.+. +.+.||.++++++.+++.|+||.-|.|.. ....+++.++-.+.+
T Consensus 324 ~gr~~~l~v~---l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~ 384 (404)
T PRK08198 324 AGRYLKLRVR---LPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE 384 (404)
T ss_pred cCCEEEEEEE---eCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH
Confidence 4566677776 78999999999999999999999888852 245677777665533
No 191
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.49 E-value=42 Score=25.01 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=27.1
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
++.|.+ .+.||+++++.++|.+.|++|.+.--+
T Consensus 2 vlev~a---~DRpGLL~~i~~~l~~~~l~i~~AkI~ 34 (75)
T cd04896 2 LLQIRC---VDQKGLLYDILRTSKDCNIQISYGRFS 34 (75)
T ss_pred EEEEEe---CCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence 345554 578999999999999999999887644
No 192
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=69.91 E-value=26 Score=29.23 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=36.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEecc----ccHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPE----KEVKAVAEALES 302 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~----~d~~~av~~Lh~ 302 (327)
+.+..|.+++++..+++.++||.-|.|+.+ .-++++.++- .++++.++.|.+
T Consensus 79 ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k 137 (150)
T COG4492 79 LEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRK 137 (150)
T ss_pred EhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhc
Confidence 457789999999999999999999999875 2344444443 344555555443
No 193
>PRK03670 competence damage-inducible protein A; Provisional
Probab=69.16 E-value=22 Score=32.82 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|.+.|++.... .++.| |.+.+.+.++..+.. ...+.|++|-+|.+.+
T Consensus 20 tN~~~la~~L~~~G~~v~~~-----~iV~D--------d~~~I~~~l~~a~~~-~~DlVIttGGlGpt~d---------- 75 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRI-----TTVGD--------DVEEIKSVVLEILSR-KPEVLVISGGLGPTHD---------- 75 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEE-----EEcCC--------CHHHHHHHHHHHhhC-CCCEEEECCCccCCCC----------
Confidence 35667899999999886443 23333 234455666666541 2478888886554443
Q ss_pred chHHHHHHHHHhCCc
Q 020388 126 SDFSAAIMGALLRAH 140 (327)
Q Consensus 126 sD~~A~~lA~~l~A~ 140 (327)
|.|.-.+|.+++-+
T Consensus 76 -D~T~eava~a~g~~ 89 (252)
T PRK03670 76 -DVTMLAVAEALGRE 89 (252)
T ss_pred -CchHHHHHHHhCCC
Confidence 89999999999853
No 194
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=69.13 E-value=26 Score=23.34 Aligned_cols=38 Identities=11% Similarity=0.288 Sum_probs=28.0
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCCc---cEEEEEec
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVP 289 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~---~sIs~~V~ 289 (327)
.+.|+.++++.+.|+++++++..+.+..+. ..+.+.+.
T Consensus 6 ~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 6 IDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred eccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 367899999999999999999887654332 33455554
No 195
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=67.94 E-value=38 Score=27.71 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=42.0
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC-cc-EEEEEeccccHHHHHHHHHHHHH
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-EH-SVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s-~~-sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
.||+. ..+.||-++.+...|+++|||+...+-..+ +. -+..+|++.| .|-++||+.=|
T Consensus 5 QISvF---lENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d--~A~~~Lee~gF 64 (142)
T COG4747 5 QISVF---LENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD--EAHSVLEEAGF 64 (142)
T ss_pred EEEEE---ecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH--HHHHHHHHCCc
Confidence 46666 457899999999999999999999875432 32 3566777764 46666776533
No 196
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=67.56 E-value=34 Score=29.50 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|++.|+++... .++.| +.+.+.+.++.+++ ...+.|++|-.|.+ .
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~-----~~v~D--------d~~~I~~~l~~~~~--~~dlVIttGG~G~t-----------~ 72 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRV-----TVVGD--------DEDRIAEALRRASE--RADLVITTGGLGPT-----------H 72 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHHHh--CCCEEEECCCCCCC-----------C
Confidence 35668899999999886442 22333 23445566776665 45777887754433 3
Q ss_pred chHHHHHHHHHhCCc
Q 020388 126 SDFSAAIMGALLRAH 140 (327)
Q Consensus 126 sD~~A~~lA~~l~A~ 140 (327)
-|.+.-.++.+++-+
T Consensus 73 ~D~t~ea~~~~~~~~ 87 (170)
T cd00885 73 DDLTREAVAKAFGRP 87 (170)
T ss_pred CChHHHHHHHHhCCC
Confidence 499999999999853
No 197
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.75 E-value=26 Score=24.61 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=27.4
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS 279 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~ 279 (327)
+|.|.+ .+.||+++++.+.|+++|++|..+...+
T Consensus 2 ~l~v~~---~d~~gll~~i~~~l~~~~~~I~~~~~~~ 35 (70)
T cd04899 2 VLELTA---LDRPGLLADVTRVLAELGLNIHSAKIAT 35 (70)
T ss_pred EEEEEE---cCCccHHHHHHHHHHHCCCeEEEEEEEe
Confidence 466665 4789999999999999999997765443
No 198
>PRK03673 hypothetical protein; Provisional
Probab=66.71 E-value=28 Score=34.42 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|++.|++..... ++.| |.+...+.++..+. ..++.|++|-+|.+.+
T Consensus 21 tN~~~la~~L~~~G~~v~~~~-----~v~D--------~~~~i~~~l~~a~~--~~DlVI~tGGlGpt~d---------- 75 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRN-----TVGD--------NLDALVAILRERSQ--HADVLIVNGGLGPTSD---------- 75 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEE-----EcCC--------CHHHHHHHHHHHhc--cCCEEEEcCCCCCCCc----------
Confidence 356788999999999865432 2333 24455566666665 5678888886554433
Q ss_pred chHHHHHHHHHhCCc
Q 020388 126 SDFSAAIMGALLRAH 140 (327)
Q Consensus 126 sD~~A~~lA~~l~A~ 140 (327)
|.+.-.+|.+++-.
T Consensus 76 -D~t~~avA~a~g~~ 89 (396)
T PRK03673 76 -DLSALAAATAAGEG 89 (396)
T ss_pred -ccHHHHHHHHcCCC
Confidence 99999999999953
No 199
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=66.12 E-value=38 Score=26.93 Aligned_cols=80 Identities=13% Similarity=0.025 Sum_probs=43.4
Q ss_pred CCeeeecCCcchHHHHHHHHHhC--CceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHH
Q 020388 116 NIPTTLKRDGSDFSAAIMGALLR--AHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193 (327)
Q Consensus 116 g~~~~lgrggsD~~A~~lA~~l~--A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~ 193 (327)
|.+..+|.|+|...|.+++..|. -..+.++.+...++..-....++.-.+ - ++..|..----++++.|+
T Consensus 1 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi-~--------iS~sG~t~~~~~~~~~a~ 71 (128)
T cd05014 1 GKVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVI-A--------ISNSGETDELLNLLPHLK 71 (128)
T ss_pred CeEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEE-E--------EeCCCCCHHHHHHHHHHH
Confidence 45677899999999999998885 224444444333322111111111111 1 111222222235788999
Q ss_pred hCCCCEEEeec
Q 020388 194 RYDIPIVIRNI 204 (327)
Q Consensus 194 ~~~I~v~I~n~ 204 (327)
+.|++++....
T Consensus 72 ~~g~~vi~iT~ 82 (128)
T cd05014 72 RRGAPIIAITG 82 (128)
T ss_pred HCCCeEEEEeC
Confidence 99999766544
No 200
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.92 E-value=26 Score=26.35 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=35.7
Q ss_pred CCCCcccHHHHHHHHHHhCCCCEEEEEecC---CccEEEEEecccc----HHHHHHHHHH
Q 020388 250 GMAGVPGTANAIFGAVKDVGANVIMISQAS---SEHSVCFAVPEKE----VKAVAEALES 302 (327)
Q Consensus 250 ~~~~~~~v~a~if~~L~~~gI~V~~Isq~~---s~~sIs~~V~~~d----~~~av~~Lh~ 302 (327)
.+++.||-+.++.+.|+..+|+ .+.+.. ....+.+.+.-.+ .+++++.|.+
T Consensus 7 ~ipD~PG~L~~ll~~l~~anI~--~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 7 TIPERPGSFKKFCELIGPRNIT--EFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred ecCCCCcHHHHHHHHhCCCcee--EEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 3789999999999999966555 444432 3566777777555 7777776655
No 201
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.65 E-value=31 Score=24.95 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=28.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEecc
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPE 290 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~ 290 (327)
+.+.||+++++...|+++|+||......+. ..-..|.|.+
T Consensus 8 ~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~ 49 (72)
T cd04926 8 TEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD 49 (72)
T ss_pred ECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC
Confidence 457899999999999999999976443333 2335555543
No 202
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=61.08 E-value=41 Score=27.74 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|++.|+...... ++.| |.+...+.++..++ ..++.|++|-.+.+ .
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~-----~v~D--------d~~~i~~~l~~~~~--~~D~VittGG~g~~-----------~ 70 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYG-----IVPD--------DPDAIKEALRRALD--RADLVITTGGTGPG-----------P 70 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE-----EEES--------SHHHHHHHHHHHHH--TTSEEEEESSSSSS-----------T
T ss_pred hHHHHHHHHHHHcCCeeeEEE-----EECC--------CHHHHHHHHHhhhc--cCCEEEEcCCcCcc-----------c
Confidence 456788999999998765432 3333 34556677777776 56888888744432 2
Q ss_pred chHHHHHHHHHhCC
Q 020388 126 SDFSAAIMGALLRA 139 (327)
Q Consensus 126 sD~~A~~lA~~l~A 139 (327)
.|++.-.++...+-
T Consensus 71 ~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 71 DDVTPEALAEAGGR 84 (144)
T ss_dssp TCHHHHHHHHHSSE
T ss_pred CCcccHHHHHhcCc
Confidence 38888888877763
No 203
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.14 E-value=69 Score=23.84 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=34.3
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc--cEEEEEecccc
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAVPEKE 292 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~--~sIs~~V~~~d 292 (327)
.+|.|.+ ++.||++.++..+|.+.|++|....-++.. ..=.|.|...+
T Consensus 2 TvveV~~---~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~ 51 (75)
T cd04897 2 SVVTVQC---RDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD 51 (75)
T ss_pred EEEEEEe---CCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC
Confidence 4567775 578999999999999999999987655432 22235554443
No 204
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.38 E-value=46 Score=23.67 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=35.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccc---cHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEK---EVKAVAEALE 301 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~---d~~~av~~Lh 301 (327)
+++.||-+.++.+.+++ |.||..+.+.-+ ...+.+.+.-. +.+++++.|.
T Consensus 5 ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~ 60 (68)
T cd04885 5 FPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLE 60 (68)
T ss_pred CCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHH
Confidence 67899999999999999 999999887542 34455555543 3444444443
No 205
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.27 E-value=39 Score=27.31 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=23.4
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEe
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQ 277 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq 277 (327)
.+.||.+.+++..|+++|||+..|..
T Consensus 49 ~~~pGsL~~iL~~Fa~~gINLt~IES 74 (115)
T cd04930 49 KEGFSSLSRILKVFETFEAKIHHLES 74 (115)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEC
Confidence 45799999999999999999999973
No 206
>PRK01215 competence damage-inducible protein A; Provisional
Probab=58.73 E-value=44 Score=31.04 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|++.|++..... ++.| |.+.+.+.++..++ ...+.|++|-.|.+.
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~-----~v~D--------d~~~I~~~l~~a~~--~~DlVIttGG~g~t~----------- 76 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRIT-----VVMD--------DIEEIVSAFREAID--RADVVVSTGGLGPTY----------- 76 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-----EeCC--------CHHHHHHHHHHHhc--CCCEEEEeCCCcCCh-----------
Confidence 456788999999999865432 2333 23445566777665 457888887544333
Q ss_pred chHHHHHHHHHhCCc
Q 020388 126 SDFSAAIMGALLRAH 140 (327)
Q Consensus 126 sD~~A~~lA~~l~A~ 140 (327)
.|.+.-.+|.+++-+
T Consensus 77 dD~t~eaia~~~g~~ 91 (264)
T PRK01215 77 DDKTNEGFAKALGVE 91 (264)
T ss_pred hhhHHHHHHHHhCCC
Confidence 399999999999854
No 207
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=57.79 E-value=29 Score=24.64 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHhCCCCEEEEEecCCcc--------EEEEEeccccHHHHHHHHHH
Q 020388 255 PGTANAIFGAVKDVGANVIMISQASSEH--------SVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 255 ~~v~a~if~~L~~~gI~V~~Isq~~s~~--------sIs~~V~~~d~~~av~~Lh~ 302 (327)
+--+.-+-..|.++||+...-....+.. -+.+.|+++|.++|.+.|+.
T Consensus 9 ~~ea~~i~~~L~~~gI~~~v~~~~~~~~~g~~g~~~~~~v~V~~~d~~~A~~il~~ 64 (67)
T PF09413_consen 9 PIEAELIKGLLEENGIPAFVKNEHMSGYAGEPGTGGQVEVYVPEEDYERAREILEE 64 (67)
T ss_dssp HHHHHHHHHHHHHTT--EE--S----SS---S--SSSEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEECCccchhhcccCccCceEEEECHHHHHHHHHHHHH
Confidence 3345667788999999877654332221 18899999999999999976
No 208
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=57.55 E-value=67 Score=26.65 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++.++.+.|++.|+++... .++.| |.+...+.++++++ ...+.|++|-.+. |..
T Consensus 28 n~~~l~~~l~~~G~~v~~~-----~~v~D--------d~~~i~~~l~~~~~--~~DliIttGG~g~-----------g~~ 81 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRL-----GIVPD--------DPEEIREILRKAVD--EADVVLTTGGTGV-----------GPR 81 (144)
T ss_pred cHHHHHHHHHHCCCeEEEE-----eecCC--------CHHHHHHHHHHHHh--CCCEEEECCCCCC-----------CCC
Confidence 4567889999999876443 22233 23445566666665 5577888774332 334
Q ss_pred hHHHHHHHHHh
Q 020388 127 DFSAAIMGALL 137 (327)
Q Consensus 127 D~~A~~lA~~l 137 (327)
|++...++...
T Consensus 82 D~t~~ai~~~g 92 (144)
T TIGR00177 82 DVTPEALEELG 92 (144)
T ss_pred ccHHHHHHHhC
Confidence 88888888776
No 209
>PRK00549 competence damage-inducible protein A; Provisional
Probab=53.93 E-value=53 Score=32.58 Aligned_cols=70 Identities=24% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|++.|++.... .++.| |.+.+.+.++..++ ...+.|++|-+|.+.
T Consensus 20 tN~~~L~~~L~~~G~~v~~~-----~~v~D--------d~~~I~~~l~~a~~--~~DlVItTGGlGpt~----------- 73 (414)
T PRK00549 20 TNAQFLSEKLAELGIDVYHQ-----TVVGD--------NPERLLSALEIAEE--RSDLIITTGGLGPTK----------- 73 (414)
T ss_pred hhHHHHHHHHHHCCCeEEEE-----EEeCC--------CHHHHHHHHHHhcc--CCCEEEECCCCCCCC-----------
Confidence 35667899999999987543 23333 23445566665544 557888888555443
Q ss_pred chHHHHHHHHHhCCce
Q 020388 126 SDFSAAIMGALLRAHQ 141 (327)
Q Consensus 126 sD~~A~~lA~~l~A~~ 141 (327)
-|.+.-.+|.+++.+.
T Consensus 74 dD~t~ea~a~~~g~~l 89 (414)
T PRK00549 74 DDLTKETVAKFLGREL 89 (414)
T ss_pred CccHHHHHHHHhCCCC
Confidence 3999999999998643
No 210
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=53.86 E-value=40 Score=26.67 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=35.8
Q ss_pred CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEe-ccccHHHHHHHHHHHHHhhhcCCCC
Q 020388 253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV-PEKEVKAVAEALESKFREALNAGRL 313 (327)
Q Consensus 253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V-~~~d~~~av~~Lh~~f~~~~~~~~~ 313 (327)
++|..+..+..-|+..||.+.+-.++ ...+.+.+ ++++.+++...|.+ |.......+-
T Consensus 8 ~n~r~AqaF~DYl~sqgI~~~i~~~~--~~~~~lwl~de~~~~~a~~el~~-Fl~nP~~~rY 66 (101)
T PF12122_consen 8 NNPRAAQAFIDYLASQGIELQIEPEG--QGQFALWLHDEEHLEQAEQELEE-FLQNPNDPRY 66 (101)
T ss_dssp SSHHHHHHHHHHHHHTT--EEEE-SS--SE--EEEES-GGGHHHHHHHHHH-HHHS-SS---
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEECC--CCceEEEEeCHHHHHHHHHHHHH-HHHCCCCHHH
Confidence 57899999999999999999987633 22244444 66788888877765 7655544443
No 211
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=53.05 E-value=1.2e+02 Score=24.53 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=29.8
Q ss_pred cCCCCCeeeecCCcc-h--HHHHHHHHHhCCceEEEeeccCcccc
Q 020388 112 STPDNIPTTLKRDGS-D--FSAAIMGALLRAHQVTIWTDVDGVYS 153 (327)
Q Consensus 112 ~~~~g~~~~lgrggs-D--~~A~~lA~~l~A~~l~~~tDV~Gi~t 153 (327)
.+-.|.+..+.||+. + ..-+..|...+|.-++++.+.+|.+.
T Consensus 41 ~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~ 85 (127)
T cd04819 41 LDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLP 85 (127)
T ss_pred CCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCc
Confidence 344566666666644 1 23577899999999999999988653
No 212
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=52.13 E-value=42 Score=29.19 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=51.8
Q ss_pred cCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhc---------
Q 020388 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN--------- 309 (327)
Q Consensus 239 ~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~--------- 309 (327)
++.-+|+++|. +.||+...+.++..++|-|+.----+.-...+++++.=+---.++..|...|..--.
T Consensus 3 ~~~LvItavg~---d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav~~le~~l~~l~~~~~L~v~m~ 79 (176)
T COG2716 3 EHYLVITAVGA---DRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAVTLLEATLPLLGAELDLLVVMK 79 (176)
T ss_pred ccEEEEEEecC---CCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHHHHHHHHhhcccccCCeEEEEe
Confidence 45678999994 679999999999999999976411000122333333322223344455554432222
Q ss_pred -------CCCCceeEEEEeeccCC
Q 020388 310 -------AGRLSQFSASILSQDKS 326 (327)
Q Consensus 310 -------~~~~~~~~~~~~~~~~~ 326 (327)
...-.++.+++.++|+.
T Consensus 80 rt~~~~~~a~~~~v~v~v~a~Drp 103 (176)
T COG2716 80 RTGAHPTPANPAPVWVYVDANDRP 103 (176)
T ss_pred ecCCCccCCCCceEEEEEEecCCc
Confidence 33455689999999874
No 213
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.02 E-value=95 Score=22.64 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=32.6
Q ss_pred EEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--c-cEEEEEeccccHHH
Q 020388 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--E-HSVCFAVPEKEVKA 295 (327)
Q Consensus 244 IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~-~sIs~~V~~~d~~~ 295 (327)
|.|.. ++.|++++++..+|+.+|.||....-.++ . .-=+|.|.+.+.+.
T Consensus 4 I~V~~---~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~ 55 (68)
T cd04928 4 ITFAA---GDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE 55 (68)
T ss_pred EEEEE---CCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc
Confidence 45664 47899999999999999999987443322 2 12345555554443
No 214
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=50.29 E-value=1e+02 Score=24.34 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=38.3
Q ss_pred eEEEeecCC--CCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 242 ALVNVEGTG--MAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 242 a~IsIvG~~--~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
+-++++-.| ..+-..+.+++.+.|++.|++-..- +-+..|-- +-+++-.+++.+|+..+..
T Consensus 5 v~~sviP~gt~~~svs~yVa~~i~~lk~~glky~~~---pm~T~iEg--~~del~~~ik~~~Ea~~~~ 67 (100)
T COG0011 5 VELSVIPLGTGGPSVSKYVAEAIEILKESGLKYQLG---PMGTVIEG--ELDELMEAVKEAHEAVFEK 67 (100)
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHcCCceeec---CcceEEEe--cHHHHHHHHHHHHHHHHhc
Confidence 334555443 3344678999999999999986662 33333322 5566666677777765433
No 215
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=50.17 E-value=63 Score=26.30 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCC
Q 020388 45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD 124 (327)
Q Consensus 45 ~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrg 124 (327)
-.++..+++.|++.|....... ++.| |.+...+.++++++ ...+.|++|-.+. |
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~-----~v~D--------d~~~I~~~l~~~~~--~~dliittGG~g~-----------g 70 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYV-----IVPD--------DKEAIKEALREALE--RADLVITTGGTGP-----------G 70 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEE-----EeCC--------CHHHHHHHHHHHHh--CCCEEEEcCCCCC-----------C
Confidence 4456788999999998764432 2222 34455566777765 4577787774332 2
Q ss_pred cchHHHHHHHHHhCC
Q 020388 125 GSDFSAAIMGALLRA 139 (327)
Q Consensus 125 gsD~~A~~lA~~l~A 139 (327)
..|++-..++..++.
T Consensus 71 ~~D~t~~~l~~~~~~ 85 (135)
T smart00852 71 PDDVTPEAVAEALGK 85 (135)
T ss_pred CCcCcHHHHHHHhCC
Confidence 338888888887764
No 216
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=49.96 E-value=75 Score=27.11 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCC
Q 020388 45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD 124 (327)
Q Consensus 45 ~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrg 124 (327)
--++..+++.|++.|.++..+ .++.| |.+...+.++++++.....+.|++|-.+.+
T Consensus 21 d~n~~~l~~~L~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~~~~~~~~DlVIttGGtg~g----------- 76 (163)
T TIGR02667 21 DTSGQYLVERLTEAGHRLADR-----AIVKD--------DIYQIRAQVSAWIADPDVQVILITGGTGFT----------- 76 (163)
T ss_pred CCcHHHHHHHHHHCCCeEEEE-----EEcCC--------CHHHHHHHHHHHHhcCCCCEEEECCCcCCC-----------
Confidence 345667888999999875432 23343 344556777776532245788888743332
Q ss_pred cchHHHHHHHHHhC
Q 020388 125 GSDFSAAIMGALLR 138 (327)
Q Consensus 125 gsD~~A~~lA~~l~ 138 (327)
.-|++.-.++..++
T Consensus 77 ~~D~t~eal~~l~~ 90 (163)
T TIGR02667 77 GRDVTPEALEPLFD 90 (163)
T ss_pred CCCCcHHHHHHHHC
Confidence 23777777777664
No 217
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=49.47 E-value=72 Score=30.93 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=38.1
Q ss_pred ecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec---C----CccEEEEEecccc
Q 020388 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA---S----SEHSVCFAVPEKE 292 (327)
Q Consensus 238 ~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~---~----s~~sIs~~V~~~d 292 (327)
......+.+. +.+.||.++++.+.+++.|.||.-|.+. . ....+.+.++-.+
T Consensus 302 ~gr~~~l~v~---l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~ 360 (380)
T TIGR01127 302 SGRKVRIETV---LPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG 360 (380)
T ss_pred CCCEEEEEEE---eCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC
Confidence 3455566665 7889999999999999999999888543 1 2345667776543
No 218
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=47.83 E-value=24 Score=33.75 Aligned_cols=156 Identities=14% Similarity=0.095 Sum_probs=83.9
Q ss_pred ecCCCCCeee--ec--CCcchHHHHHHHHHhCCceEE-EeeccCccccCCCCCCCCCeEEeecCHHHHHHHH-hcCCCcc
Q 020388 111 ASTPDNIPTT--LK--RDGSDFSAAIMGALLRAHQVT-IWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS-YFGANVL 184 (327)
Q Consensus 111 ~~~~~g~~~~--lg--rggsD~~A~~lA~~l~A~~l~-~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~-~~g~~v~ 184 (327)
+.|+.|.... +| .||+..+|-.+|..|+|..++ =.||+.|.+.-| .++ .+|..+-
T Consensus 83 vvDe~G~~vIsLLsGH~GGAN~LA~~iA~~lga~pVITTAtd~~g~~avD-------------------~la~~~g~~i~ 143 (315)
T PRK05788 83 VVDEKGKFVISLLSGHHGGANELARDLAKILGAVPVITTATDVNGKAAVD-------------------TIAKQLNAKIV 143 (315)
T ss_pred EEeCCCCEEEEcccCCcccHHHHHHHHHHHhCCEEEEeCCccccCCccHH-------------------HHHHhcCCEec
Confidence 6678887533 33 688999999999999997654 455777776532 111 1343333
Q ss_pred cHh---hHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCc---ccHH
Q 020388 185 HPR---TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGV---PGTA 258 (327)
Q Consensus 185 ~p~---a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~---~~v~ 258 (327)
.++ .+..+.-.|=++.+..-. ..+..+.....+.. ......+.+.... -++|-|.+.. ..+.
T Consensus 144 ~~~~~k~i~a~ll~g~~v~~~~~~---~~~~i~i~~~~~~~------~~~~~~l~l~P~~---l~vGIGcrrg~~~e~i~ 211 (315)
T PRK05788 144 NRESTKKVNAALVNGEKVGLWGDE---LDPVIRVSLRNDVP------ELPKVTVKLRPKN---VVLGIGCRKGVSAEEIA 211 (315)
T ss_pred CHHHHHHHHHHHHCCCceEEEccC---CCceEEEecccccc------CCCCceEEEecCe---EEEeeccCCCCCHHHHH
Confidence 332 333444455555544221 12222222111000 0001123333333 2556666543 3478
Q ss_pred HHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388 259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
..+-++|+++|+....|. .-.+++.+.-+..+..+.+.|
T Consensus 212 ~ai~~~L~~~~i~~~~i~-------~iatid~K~~E~gL~~~a~~l 250 (315)
T PRK05788 212 EAVERALEALNIDPRAVK-------AIASITLKKDEPGLLQLAEEL 250 (315)
T ss_pred HHHHHHHHHcCCCHHHcc-------EEeeeeccCCCHHHHHHHHHh
Confidence 888899999998755543 334455555566777777765
No 219
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=45.51 E-value=1e+02 Score=30.71 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++..+++.|++.|++.... .++.| |.+...+.++..++ ..++.|++|-++.+. .
T Consensus 21 N~~~l~~~L~~~G~~v~~~-----~~v~D--------d~~~i~~~l~~a~~--~~DlVIttGGlgpt~-----------d 74 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRR-----TTVGD--------NPERLKTIIRIASE--RADVLIFNGGLGPTS-----------D 74 (413)
T ss_pred hHHHHHHHHHHCCCeEEEE-----EEeCC--------CHHHHHHHHHHHhc--CCCEEEEcCCCCCCC-----------c
Confidence 4567889999999986543 22233 23445566666665 567888888555433 3
Q ss_pred hHHHHHHHHHhCCc
Q 020388 127 DFSAAIMGALLRAH 140 (327)
Q Consensus 127 D~~A~~lA~~l~A~ 140 (327)
|.+.-.+|.+++-+
T Consensus 75 D~t~eava~~~g~~ 88 (413)
T TIGR00200 75 DLTAETIATAKGEP 88 (413)
T ss_pred ccHHHHHHHHhCCC
Confidence 88999999998854
No 220
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=45.46 E-value=1.4e+02 Score=24.24 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++.++.+.|++.|.+.... .++.| |.+...+.++++++ ...+.|++|-.+.+ .
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~-----~~v~D--------d~~~i~~~i~~~~~--~~DlvittGG~g~g-----------~ 72 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYA-----GVVPD--------DADSIRAALIEASR--EADLVLTTGGTGVG-----------R 72 (133)
T ss_pred chHHHHHHHHHHCCCEEEEe-----eecCC--------CHHHHHHHHHHHHh--cCCEEEECCCCCCC-----------C
Confidence 35678889999999765432 12232 34456677777776 46788888744433 3
Q ss_pred chHHHHHHHHHh
Q 020388 126 SDFSAAIMGALL 137 (327)
Q Consensus 126 sD~~A~~lA~~l 137 (327)
.|.+.-.++...
T Consensus 73 ~D~t~~ai~~~g 84 (133)
T cd00758 73 RDVTPEALAELG 84 (133)
T ss_pred CcchHHHHHHhc
Confidence 488888887765
No 221
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=45.34 E-value=1.1e+02 Score=26.27 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=43.3
Q ss_pred cCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHHH
Q 020388 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 239 ~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
-+...|.+.-. ....||+.+.+++.++++||+|..+-.... +-.+.++....==.+++..|.+
T Consensus 91 lG~gViei~~~-~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~ 157 (167)
T COG2150 91 LGLGVIEIYPE-DARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKK 157 (167)
T ss_pred cCCeEEEEEec-cCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCCHHHHHHHhc
Confidence 35555666543 346899999999999999999988863333 4567777766655555555543
No 222
>COG3602 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.36 E-value=32 Score=27.91 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=47.8
Q ss_pred EeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388 236 ATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 236 ~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
.+.--+++|++--..-..-.|+.+.+-.+|+++||...+++ .-..=-++|+.++.++++..|..
T Consensus 65 ~~~~~~~lITL~VhSsLeaVGltAA~ataLa~aGis~Nvva---ayyHDHlFVp~e~a~~A~~~L~~ 128 (134)
T COG3602 65 SYSAVCRLITLNVHSSLEAVGLTAAFATALAEAGISCNVVA---AYYHDHLFVPAERAKEALVVLQG 128 (134)
T ss_pred CccceeeeEEeehhhhhhhhhHHHHHHHHHHHcCcccchhh---hhhcceeeeeHHHHHHHHHHHHH
Confidence 34445667776544444567899999999999999998875 22334578899999999998865
No 223
>PRK06382 threonine dehydratase; Provisional
Probab=44.09 E-value=1e+02 Score=30.38 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=42.7
Q ss_pred ecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec----C---CccEEEEEeccc---cHHHHHHHHHH
Q 020388 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA----S---SEHSVCFAVPEK---EVKAVAEALES 302 (327)
Q Consensus 238 ~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~----~---s~~sIs~~V~~~---d~~~av~~Lh~ 302 (327)
.+....+.+. +.+.||.++++.+.+.++|+||..+.+. . ....+.|-|+.. +.+++++.|.+
T Consensus 327 ~~~~~rl~v~---v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECN---IPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEE---cCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3455666675 7899999999999999999999876653 1 134577777664 22344444433
No 224
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=43.07 E-value=1.3e+02 Score=25.07 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++.++.+.|++.|.+.... .++.| |.+...+.+++.++.....+.|++|-.+.+. -
T Consensus 21 n~~~l~~~l~~~G~~v~~~-----~~v~D--------d~~~i~~~l~~~~~~~~~DlVittGG~s~g~-----------~ 76 (152)
T cd00886 21 SGPALVELLEEAGHEVVAY-----EIVPD--------DKDEIREALIEWADEDGVDLILTTGGTGLAP-----------R 76 (152)
T ss_pred hHHHHHHHHHHcCCeeeeE-----EEcCC--------CHHHHHHHHHHHHhcCCCCEEEECCCcCCCC-----------C
Confidence 4567888999999865432 23333 3444556666665421347788877444333 3
Q ss_pred hHHHHHHHHHhC
Q 020388 127 DFSAAIMGALLR 138 (327)
Q Consensus 127 D~~A~~lA~~l~ 138 (327)
|++...++..++
T Consensus 77 D~t~~al~~~~~ 88 (152)
T cd00886 77 DVTPEATRPLLD 88 (152)
T ss_pred cCcHHHHHHHhC
Confidence 777777777764
No 225
>PRK06349 homoserine dehydrogenase; Provisional
Probab=42.88 E-value=74 Score=31.63 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=34.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccccH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEV 293 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~d~ 293 (327)
..+.||+++++-..|++++|++..+.|... ...+.+++.....
T Consensus 355 v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e 400 (426)
T PRK06349 355 VADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSE 400 (426)
T ss_pred ecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCH
Confidence 457899999999999999999999988653 2467777765443
No 226
>PRK07334 threonine dehydratase; Provisional
Probab=40.66 E-value=1.2e+02 Score=29.68 Aligned_cols=58 Identities=21% Similarity=0.351 Sum_probs=40.0
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC-------CccEEEEEeccccHH---HHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS-------SEHSVCFAVPEKEVK---AVAEALES 302 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~-------s~~sIs~~V~~~d~~---~av~~Lh~ 302 (327)
+.|.|.. .+.+|+++++...|++.++||..++... ....+.|.+.-.+.+ ++++.|.+
T Consensus 327 v~l~I~~---~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDI---RDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEe---CCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 6677774 5789999999999999999999887432 123355555544544 55555544
No 227
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=37.20 E-value=40 Score=23.43 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.1
Q ss_pred hcHHHHHHHHHHHHHHcCCceeEEcc
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKWMDT 67 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~ 67 (327)
+.+. |.++++.|+..|||++.+.+
T Consensus 9 C~~~--a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 9 CGEF--AALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eHHH--HHHHHHHHHHCCCCeEEEee
Confidence 4555 88899999999999998764
No 228
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=37.08 E-value=1.3e+02 Score=29.87 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (327)
Q Consensus 48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD 127 (327)
...+++.|++.|.....+ .+..| |.+..++.+++.++ ..++.|++|-.+ . |..|
T Consensus 205 ~~~l~a~l~~~G~e~~~~-----giv~D--------d~~~l~~~i~~a~~--~~DviItsGG~S---------v--G~~D 258 (404)
T COG0303 205 SYMLAALLERAGGEVVDL-----GIVPD--------DPEALREAIEKALS--EADVIITSGGVS---------V--GDAD 258 (404)
T ss_pred HHHHHHHHHHcCCceeec-----cccCC--------CHHHHHHHHHHhhh--cCCEEEEeCCcc---------C--cchH
Confidence 457788999999865332 33333 45566677777776 568888887322 1 3459
Q ss_pred HHHHHHHHHhCCceEEEee
Q 020388 128 FSAAIMGALLRAHQVTIWT 146 (327)
Q Consensus 128 ~~A~~lA~~l~A~~l~~~t 146 (327)
++-..+...++ .+.||.
T Consensus 259 ~v~~~l~~~lG--~v~~~g 275 (404)
T COG0303 259 YVKAALERELG--EVLFHG 275 (404)
T ss_pred hHHHHHHhcCC--cEEEEe
Confidence 99888887788 677764
No 229
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=37.03 E-value=1e+02 Score=23.84 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=40.4
Q ss_pred hhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCe
Q 020388 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP 118 (327)
Q Consensus 39 v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~ 118 (327)
++++|+. ++.++..|++.+.+.+.++. |. +.++++.+ .+ ++++.|+.
T Consensus 3 I~G~g~~--~~~i~~~L~~~~~~vvvid~----------------d~----~~~~~~~~--~~-~~~i~gd~-------- 49 (116)
T PF02254_consen 3 IIGYGRI--GREIAEQLKEGGIDVVVIDR----------------DP----ERVEELRE--EG-VEVIYGDA-------- 49 (116)
T ss_dssp EES-SHH--HHHHHHHHHHTTSEEEEEES----------------SH----HHHHHHHH--TT-SEEEES-T--------
T ss_pred EEcCCHH--HHHHHHHHHhCCCEEEEEEC----------------Cc----HHHHHHHh--cc-cccccccc--------
Confidence 4577776 88889999998756554431 22 44555554 34 67777751
Q ss_pred eeecCCcchHHHHHHHHHhCCceEEEeec
Q 020388 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTD 147 (327)
Q Consensus 119 ~~lgrggsD~~A~~lA~~l~A~~l~~~tD 147 (327)
.|.-...-|..-+|+.++++++
T Consensus 50 -------~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 50 -------TDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp -------TSHHHHHHTTGGCESEEEEESS
T ss_pred -------hhhhHHhhcCccccCEEEEccC
Confidence 1333444445556777777665
No 230
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=35.89 E-value=2.2e+02 Score=23.73 Aligned_cols=65 Identities=9% Similarity=0.155 Sum_probs=42.0
Q ss_pred ecCCCCCeeeecCCcc------hHHHHHHHHHhCCceEEEeecc--CccccCCCCCCC-C-CeEEe--ecCHHHHHHHH
Q 020388 111 ASTPDNIPTTLKRDGS------DFSAAIMGALLRAHQVTIWTDV--DGVYSADPRKVS-E-AVILR--TLSYQEAWEMS 177 (327)
Q Consensus 111 ~~~~~g~~~~lgrggs------D~~A~~lA~~l~A~~l~~~tDV--~Gi~t~dP~~~~-~-a~~i~--~is~~ea~~l~ 177 (327)
+.+-.|++..+.||+- -.--+..|..-+|..++++.+. +|.+. |.... + ...|| .|++++..+|.
T Consensus 52 ~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~--~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 52 CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQN--PFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCccc--ccccCCCCCceEeEEEeeHHHHHHHH
Confidence 3355688888889853 2345777899999999999999 88542 11111 1 23455 45666666554
No 231
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=35.50 E-value=37 Score=29.25 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=31.0
Q ss_pred EEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCC
Q 020388 143 TIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206 (327)
Q Consensus 143 ~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~ 206 (327)
.+.+||||++|+ .+++-.-.-+|. . -..+.+--.+++.+++||.+-|..+.+
T Consensus 10 Lli~DVDGvLTD-------G~ly~~~~Gee~---K--aFnv~DG~Gik~l~~~Gi~vAIITGr~ 61 (170)
T COG1778 10 LLILDVDGVLTD-------GKLYYDENGEEI---K--AFNVRDGHGIKLLLKSGIKVAIITGRD 61 (170)
T ss_pred EEEEeccceeec-------CeEEEcCCCcee---e--eeeccCcHHHHHHHHcCCeEEEEeCCC
Confidence 356899999985 344332111211 1 123344456788888999888877654
No 232
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=35.02 E-value=1.4e+02 Score=19.88 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388 258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 258 ~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
..++-..|..+++.+.-..++. ...+.+.|+.++.+.....|...
T Consensus 8 ~~~v~~~l~~~~~~i~~~~y~~-~V~~~v~v~~~~~~~f~~~l~~~ 52 (56)
T PF09186_consen 8 YGKVERLLEQNGIEIVDEDYTD-DVTLTVAVPEEEVEEFKAQLTDL 52 (56)
T ss_dssp HHHHHHHHHHTTTEEEEEEECT-TEEEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEcceecc-eEEEEEEECHHHHHHHHHHHHHH
Confidence 5678888999999999988865 59999999999999998888664
No 233
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=34.71 E-value=2.4e+02 Score=28.93 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecC---CccEEE-EEeccccHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQAS---SEHSVC-FAVPEKEVKAVAEALES 302 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~---s~~sIs-~~V~~~d~~~av~~Lh~ 302 (327)
.+.||+.+++-..|++++|||-..+.+- ....+. +-+++.--+++++.|++
T Consensus 460 ~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~ 514 (526)
T PRK13581 460 RDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRA 514 (526)
T ss_pred CCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhc
Confidence 5789999999999999999997766432 123343 44555555777777765
No 234
>PRK03381 PII uridylyl-transferase; Provisional
Probab=33.22 E-value=1.9e+02 Score=31.20 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=44.2
Q ss_pred cCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEecc-----ccHHHHHHHHHHHH
Q 020388 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPE-----KEVKAVAEALESKF 304 (327)
Q Consensus 239 ~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~-----~d~~~av~~Lh~~f 304 (327)
.+...|+|+| ++.||+++++...|...|.||.-....+. ..--+|.|.+ .+.+++.+.|.+.+
T Consensus 597 ~~~~~V~V~~---~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 597 PHMVEVTVVA---PDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred CCeEEEEEEe---cCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 4778899997 46899999999999999999987765442 2334556655 22344555555544
No 235
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=32.91 E-value=97 Score=27.58 Aligned_cols=46 Identities=9% Similarity=0.072 Sum_probs=31.8
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEE-eccccHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFA-VPEKEVKAVA 297 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~-V~~~d~~~av 297 (327)
.+.||+..++-+.|.+++|||-..+-+-. ...+.++ +++.=-++++
T Consensus 156 ~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl 205 (208)
T TIGR00719 156 NDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIK 205 (208)
T ss_pred CCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHH
Confidence 57899999999999999999977765432 3445444 4443334333
No 236
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=32.71 E-value=40 Score=25.97 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=20.8
Q ss_pred hhcHHHHHHHHHHHHHHcCCceeEEcccce
Q 020388 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREV 70 (327)
Q Consensus 41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~ 70 (327)
.|.+. |.++++.|+..|||++.+.+...
T Consensus 53 ~C~~~--a~l~~allr~~Gipar~v~g~~~ 80 (113)
T PF01841_consen 53 DCEDY--ASLFVALLRALGIPARVVSGYVK 80 (113)
T ss_dssp SHHHH--HHHHHHHHHHHT--EEEEEEEEE
T ss_pred ccHHH--HHHHHHHHhhCCCceEEEEEEcC
Confidence 46676 88999999999999998865443
No 237
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=32.29 E-value=4.6e+02 Score=25.65 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=31.8
Q ss_pred ecCCCCCeee-ecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHH
Q 020388 111 ASTPDNIPTT-LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA 173 (327)
Q Consensus 111 ~~~~~g~~~~-lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea 173 (327)
+...||.+.+ +| -+..+.+|+..+.-- +++.. .|+-||+...+.-.+.+-+.+|.
T Consensus 256 ~I~~NG~v~NKiG----Ty~lA~~Ak~~~vPf-yV~ap---~~k~d~~~~~~~i~ieer~p~ev 311 (363)
T PRK05772 256 RILRDGHVFNKIG----TFKEAVIAHELGIPF-YALAP---TSTFDLKSDVNDVKIEERDPNEV 311 (363)
T ss_pred EEecCCCEeehhh----hHHHHHHHHHhCCCE-EEEcc---ccccCccccccccccccCCHHHh
Confidence 4456777654 44 667788888888654 44432 45666664333345555555544
No 238
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=32.01 E-value=2.7e+02 Score=22.68 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=37.0
Q ss_pred CCCeeeecCCcc-hHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCe--EEeecCHHHHHHHH
Q 020388 115 DNIPTTLKRDGS-DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV--ILRTLSYQEAWEMS 177 (327)
Q Consensus 115 ~g~~~~lgrggs-D~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~--~i~~is~~ea~~l~ 177 (327)
.|.+..+-||+- =..=+..|...||..++++.|.+++...+........ +.-.|++++...|.
T Consensus 44 ~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 44 KGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred CCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 466666777752 2223667999999999999998753211111001111 34456777776663
No 239
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=31.45 E-value=1.7e+02 Score=26.44 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=44.8
Q ss_pred CCeeeecCCcchHHHHHHHHHhCC--ceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHH
Q 020388 116 NIPTTLKRDGSDFSAAIMGALLRA--HQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193 (327)
Q Consensus 116 g~~~~lgrggsD~~A~~lA~~l~A--~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~ 193 (327)
|.+..+|.|.|...|-.++..|-- ..+.++.+....+.. +......-++=-+|+ .|..----.+++.|+
T Consensus 1 ~rI~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~d~~i~iS~--------sG~t~~~~~~~~~a~ 71 (268)
T TIGR00393 1 GKLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGD-LGMVEPNDVVLMISY--------SGESLELLNLIPHLK 71 (268)
T ss_pred CcEEEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcc-cCCCCCCCEEEEEeC--------CCCCHHHHHHHHHHH
Confidence 566778889899999999877632 345566665554422 221111112222222 122211135688999
Q ss_pred hCCCCEEEeec
Q 020388 194 RYDIPIVIRNI 204 (327)
Q Consensus 194 ~~~I~v~I~n~ 204 (327)
+.|++++....
T Consensus 72 ~~g~~ii~iT~ 82 (268)
T TIGR00393 72 RLSHKIIAFTG 82 (268)
T ss_pred HcCCcEEEEEC
Confidence 99999665544
No 240
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=29.37 E-value=2.5e+02 Score=22.52 Aligned_cols=50 Identities=18% Similarity=0.344 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCEEEEEecCC-----ccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 257 TANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 257 v~a~if~~L~~~gI~V~~Isq~~s-----~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
-..++.++|.++|+.+--++.+.. +..+-+-+++++.++++..+++....
T Consensus 12 Da~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~ 66 (109)
T PF06153_consen 12 DADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKK 66 (109)
T ss_dssp HHHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHCCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcC
Confidence 377899999999999888874332 67777789999999999999998653
No 241
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=29.24 E-value=92 Score=30.58 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=26.4
Q ss_pred CCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccC
Q 020388 100 PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVD 149 (327)
Q Consensus 100 ~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~ 149 (327)
.|...||.|| |. .||| .+..++.++|+ ++.|+||
T Consensus 208 aGK~vVV~GY------G~---vGrG-----~A~~~rg~GA~--ViVtEvD 241 (420)
T COG0499 208 AGKNVVVAGY------GW---VGRG-----IAMRLRGMGAR--VIVTEVD 241 (420)
T ss_pred cCceEEEecc------cc---cchH-----HHHHhhcCCCe--EEEEecC
Confidence 7888999987 43 5778 77888999996 5667775
No 242
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=29.07 E-value=2.4e+02 Score=29.39 Aligned_cols=114 Identities=14% Similarity=0.127 Sum_probs=59.8
Q ss_pred hhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCe
Q 020388 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP 118 (327)
Q Consensus 39 v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~ 118 (327)
+.++|.. ++.++..|.++|++.+.++. |. ++++..-+ . ..+++.|+..
T Consensus 405 I~G~Gr~--G~~va~~L~~~g~~vvvID~----------------d~----~~v~~~~~--~-g~~v~~GDat------- 452 (601)
T PRK03659 405 IVGFGRF--GQVIGRLLMANKMRITVLER----------------DI----SAVNLMRK--Y-GYKVYYGDAT------- 452 (601)
T ss_pred EecCchH--HHHHHHHHHhCCCCEEEEEC----------------CH----HHHHHHHh--C-CCeEEEeeCC-------
Confidence 4667776 88899999999998766541 22 34444432 2 4578877622
Q ss_pred eeecCCcchHHHHHHHHHhCCceEEEeeccCcc--ccC--CCCCCCCCeEEeec-CHHHHHHHHhcCCCcccHhhHHHH
Q 020388 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV--YSA--DPRKVSEAVILRTL-SYQEAWEMSYFGANVLHPRTIIPV 192 (327)
Q Consensus 119 ~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi--~t~--dP~~~~~a~~i~~i-s~~ea~~l~~~g~~v~~p~a~~~a 192 (327)
|.-.-.-|..-+|+.++..+|-|-. ... -=+..|+.+.+-+. +.+++.+|-..|+..+.|.+++.+
T Consensus 453 --------~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~ 523 (601)
T PRK03659 453 --------QLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSA 523 (601)
T ss_pred --------CHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHH
Confidence 2222222333355555555543210 000 00012334444333 456677777778776666544433
No 243
>PRK06545 prephenate dehydrogenase; Validated
Probab=28.55 E-value=1.1e+02 Score=29.50 Aligned_cols=61 Identities=10% Similarity=0.153 Sum_probs=40.0
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC-C---ccEEEEEecc-ccHHHHHHHHHHH
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS-S---EHSVCFAVPE-KEVKAVAEALESK 303 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~-s---~~sIs~~V~~-~d~~~av~~Lh~~ 303 (327)
...-+.|. +.+.||.+++++..|++.|||+.-|.--. . .--+.+.+.+ ++.+++...|.+.
T Consensus 289 ~~~~~~v~---v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 354 (359)
T PRK06545 289 SFYDLYVD---VPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKNEEDRERAKALLEEF 354 (359)
T ss_pred cceEEEEe---CCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCCHHHHHHHHHHHHhc
Confidence 44555554 67899999999999999999987554211 1 1224455555 4566666666554
No 244
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=28.24 E-value=2.9e+02 Score=21.51 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=38.4
Q ss_pred CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCceeEEE
Q 020388 253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSAS 319 (327)
Q Consensus 253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~ 319 (327)
+...+.+++.+.|.+.|++..+- +-+..|- -+-+++-.+++.+|+..+..-..+.+..+++-
T Consensus 16 s~s~yVa~~i~~l~~sGl~y~~~---pm~T~IE--Ge~dev~~~i~~~~e~~~~~G~~Rv~t~ikid 77 (97)
T TIGR00106 16 SVSSYVAAAIEVLKESGLKYELH---PMGTLIE--GDLDELFEAIKAIHEAVLEKGSDRVYTSIKID 77 (97)
T ss_pred cHHHHHHHHHHHHHHcCCCeEec---CCccEEe--cCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEE
Confidence 34568889999999999998873 2233332 23455666677777766544344444445443
No 245
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=28.17 E-value=1.2e+02 Score=30.42 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=31.9
Q ss_pred eeeecCCcchHHHHHHHHHhCCc-----eEEEeeccCccccC
Q 020388 118 PTTLKRDGSDFSAAIMGALLRAH-----QVTIWTDVDGVYSA 154 (327)
Q Consensus 118 ~~~lgrggsD~~A~~lA~~l~A~-----~l~~~tDV~Gi~t~ 154 (327)
+.++|-||||+--..++.+|+.+ ++.|.+++||...+
T Consensus 153 VvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia 194 (546)
T KOG2446|consen 153 VVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIA 194 (546)
T ss_pred EEEecccccccchHHHHHhhccCCCCCceEEEEecCCchhHH
Confidence 67799999999999999999754 68899999997654
No 246
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=28.15 E-value=2.2e+02 Score=22.29 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCCEEEEEecCCccEEEEEeccc-cHHHHHHHHHHHHH
Q 020388 259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEK-EVKAVAEALESKFR 305 (327)
Q Consensus 259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~-d~~~av~~Lh~~f~ 305 (327)
.++-+.|+++||.+..|.+. +.++-+.+++. +.-+|...|.+.+.
T Consensus 49 ~~v~~~L~~~~I~~k~i~~~--~~~llirf~~~~~Ql~Ak~~L~~~L~ 94 (101)
T PF13721_consen 49 FQVEQALKAAGIAVKSIEQE--GDSLLIRFDSTDQQLKAKDVLSKALG 94 (101)
T ss_pred HHHHHHHHHCCCCcceEEee--CCEEEEEECCHHHHHHHHHHHHHHcC
Confidence 59999999999999999854 56666666665 55566777777653
No 247
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=27.78 E-value=3.1e+02 Score=22.43 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=35.1
Q ss_pred CCeeeecCCcch-HHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHH
Q 020388 116 NIPTTLKRDGSD-FSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177 (327)
Q Consensus 116 g~~~~lgrggsD-~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~ 177 (327)
|.+..+.||+.. ..-+.-|...+|..++++.+.+|...-.+.. ...-+.-.|++++..+|.
T Consensus 48 GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~-~~~iP~v~Is~~dG~~L~ 109 (143)
T cd02133 48 GKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE-AVFIPVVFISKEDGEALK 109 (143)
T ss_pred ceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC-CCeEeEEEecHHHHHHHH
Confidence 444444454422 2345567778999999999887743222111 112344566788777664
No 248
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=27.34 E-value=54 Score=22.65 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=20.6
Q ss_pred HHHHHHhCCceEEEeeccCcc--ccCCCCC
Q 020388 131 AIMGALLRAHQVTIWTDVDGV--YSADPRK 158 (327)
Q Consensus 131 ~~lA~~l~A~~l~~~tDV~Gi--~t~dP~~ 158 (327)
..++...-+..+.=|+|-+|. |+..|..
T Consensus 4 l~l~~~a~aa~vYk~~D~~G~v~ysd~P~~ 33 (60)
T PF13511_consen 4 LLLAASAAAAEVYKWVDENGVVHYSDTPPP 33 (60)
T ss_pred HHHhHHHhhccEEEEECCCCCEEECccCCC
Confidence 344555555689999999996 8888764
No 249
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.23 E-value=1.9e+02 Score=20.90 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHhCCCCEEEEEecC---CccEEEEEeccccHHHHHHHHHHH
Q 020388 256 GTANAIFGAVKDVGANVIMISQAS---SEHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 256 ~v~a~if~~L~~~gI~V~~Isq~~---s~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
.-+-+.-+.|.++|++..++.... +...+++-++.+|.+.+.+.|.+.
T Consensus 12 ~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~ 62 (73)
T PF11823_consen 12 HDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEEN 62 (73)
T ss_pred HHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHC
Confidence 345567788999999999986322 257899999999999999988774
No 250
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=27.13 E-value=2.8e+02 Score=26.11 Aligned_cols=81 Identities=16% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (327)
Q Consensus 48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD 127 (327)
-+-+...|.+.|++...+.+..- + + .....++-.+.++...+...+.+||+.|- +.+ .|- .=
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttG-----E-~--~~Ls~eEr~~v~~~~v~~~~grvpviaG~-g~~-----~t~----ea 88 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTG-----E-S--PTLTLEERKEVLEAVVEAVGGRVPVIAGV-GSN-----STA----EA 88 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCc-----c-c--hhcCHHHHHHHHHHHHHHHCCCCcEEEec-CCC-----cHH----HH
Confidence 44567888999999887765331 1 1 22334444455566655557899999884 311 110 01
Q ss_pred HHHHHHHHHhCCceEEEee
Q 020388 128 FSAAIMGALLRAHQVTIWT 146 (327)
Q Consensus 128 ~~A~~lA~~l~A~~l~~~t 146 (327)
.--+..|+.+|||.+...+
T Consensus 89 i~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 89 IELAKHAEKLGADGILVVP 107 (299)
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 1245667777887666544
No 251
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=26.47 E-value=2.2e+02 Score=25.33 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388 256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 256 ~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
.=..++...|.+.||+-.....+. . .++.|++++..++...|...
T Consensus 38 ~da~~i~~~L~~~gI~y~~~~~g~--~-~~I~Vp~~~~~~ar~~La~~ 82 (206)
T PF01514_consen 38 EDANEIVAALDENGIPYKLSDDGG--T-WTILVPEDQVARARMLLASQ 82 (206)
T ss_dssp HHHHHHHHHHHHTT--EEEEE-TT--S-EEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCcEecCCCC--e-eEEEeCHHHHHHHHHHHHHc
Confidence 337899999999999988765332 2 88999999999998887763
No 252
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=26.27 E-value=1.1e+02 Score=30.15 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEE
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMI 275 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~I 275 (327)
..+.||..+++.+.|+++||||..+
T Consensus 345 h~d~pG~ia~it~~l~~~~iNI~~m 369 (409)
T PRK11790 345 HENRPGVLAAINQIFAEQGINIAAQ 369 (409)
T ss_pred eCCCCCHHHHHHHHHHhcCCCHHHh
Confidence 4578999999999999999999544
No 253
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.45 E-value=2.7e+02 Score=19.96 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCCEEEEEecCCccEEEEEe-ccccHHHHHHHHHHHH
Q 020388 257 TANAIFGAVKDVGANVIMISQASSEHSVCFAV-PEKEVKAVAEALESKF 304 (327)
Q Consensus 257 v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V-~~~d~~~av~~Lh~~f 304 (327)
-+.++.+.+.+.|+-.-.+|.+...-++-.++ ++.+.+++.+.|.+.|
T Consensus 35 ~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 35 EIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEALREHY 83 (85)
T ss_dssp HHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 46688889999996666666332277888888 7788899999998765
No 254
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=24.30 E-value=2.7e+02 Score=26.68 Aligned_cols=97 Identities=15% Similarity=0.064 Sum_probs=55.8
Q ss_pred HHHHhhhhcHHHHHHHHHHHHHHcCCce-eEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcC--CCceEEecCcee
Q 020388 35 FTDFVVGHGELWSAQMLAAVVRKNGIDC-KWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS--PSNTIIATGFIA 111 (327)
Q Consensus 35 ~~d~v~s~GE~~s~~l~~~~L~~~Gi~a-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--~~~vpVv~Gfi~ 111 (327)
.+|..-..||-++|++++..|...|.+- ..+|...--+ . +-| ..-++.......+.+++... .....|+.++.|
T Consensus 97 RQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qi-q-gfF-dipvdnl~a~p~l~~~~~~~~~~~d~vVVSPD~G 173 (314)
T COG0462 97 RQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQI-Q-GFF-DIPVDNLYAAPLLAEYIREKYDLDDPVVVSPDKG 173 (314)
T ss_pred ccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhh-c-ccC-CCccccccchHHHHHHHHHhcCCCCcEEECCCcc
Confidence 3444557899999999999999999975 3455443211 0 111 11122222334445544421 113455554422
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148 (327)
Q Consensus 112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV 148 (327)
+=.-|-.+|..|+++--+|.+.=
T Consensus 174 --------------gv~RAr~~A~~L~~~~a~i~K~R 196 (314)
T COG0462 174 --------------GVKRARALADRLGAPLAIIDKRR 196 (314)
T ss_pred --------------HHHHHHHHHHHhCCCEEEEEEee
Confidence 23348999999998877766654
No 255
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=24.25 E-value=3.3e+02 Score=27.10 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++.++.+.|++.|.++..+ .+..| |.+...+.++++++ ...+.|++|-.+ .|.-
T Consensus 221 N~~~L~a~l~~~G~~v~~~-----~~v~D--------d~~~i~~~l~~a~~--~~DlIItTGG~S-----------~G~~ 274 (419)
T PRK14690 221 NRPMLLALARRWGHAPVDL-----GRVGD--------DRAALAARLDRAAA--EADVILTSGGAS-----------AGDE 274 (419)
T ss_pred HHHHHHHHHHHCCCEEEEE-----eeeCC--------CHHHHHHHHHHhCc--cCCEEEEcCCcc-----------CCCc
Confidence 5668899999999876432 23333 33445566666664 567888877322 2334
Q ss_pred hHHHHHHHHHhCCceEEEe
Q 020388 127 DFSAAIMGALLRAHQVTIW 145 (327)
Q Consensus 127 D~~A~~lA~~l~A~~l~~~ 145 (327)
|++-..+..+ + ++++|
T Consensus 275 D~v~~~l~~~-G--~~~~~ 290 (419)
T PRK14690 275 DHVSALLREA-G--AMQSW 290 (419)
T ss_pred chHHHHHHhc-C--CEEEc
Confidence 8888777754 5 45554
No 256
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.24 E-value=1.6e+02 Score=27.83 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchH
Q 020388 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDF 128 (327)
Q Consensus 49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~ 128 (327)
+.+...|.+.|++...+.+..- .+ .....++-.+.++...+...+.+||+.|- + .++ + .|.
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstG------E~--~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv-~--~~~--t------~~a 92 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFG------EC--ATLTWEEKQAFVATVVETVAGRVPVFVGA-T--TLN--T------RDT 92 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccc------cc--hhCCHHHHHHHHHHHHHHhCCCCCEEEEe-c--cCC--H------HHH
Confidence 4457778889999888765421 01 22334444455565655456789999773 2 111 1 022
Q ss_pred -HHHHHHHHhCCceEEEee
Q 020388 129 -SAAIMGALLRAHQVTIWT 146 (327)
Q Consensus 129 -~A~~lA~~l~A~~l~~~t 146 (327)
-.+..|..+||+.+.+..
T Consensus 93 i~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 93 IARTRALLDLGADGTMLGR 111 (309)
T ss_pred HHHHHHHHHhCCCEEEECC
Confidence 256778889998877665
No 257
>PRK05092 PII uridylyl-transferase; Provisional
Probab=24.20 E-value=3.6e+02 Score=29.75 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=36.2
Q ss_pred cCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc--cEEEEEecc
Q 020388 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAVPE 290 (327)
Q Consensus 239 ~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~--~sIs~~V~~ 290 (327)
.+.+.|.|.+ .+.||+++++.++|++.|++|......+.. .-=.|.|..
T Consensus 841 ~~~t~i~I~~---~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d 891 (931)
T PRK05092 841 NRFTVIEVNG---RDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD 891 (931)
T ss_pred CCeEEEEEEE---CCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC
Confidence 3567888887 468999999999999999999987654432 223455533
No 258
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=24.02 E-value=1.6e+02 Score=25.85 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=28.9
Q ss_pred EEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS 279 (327)
Q Consensus 244 IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~ 279 (327)
|-++|+....+++-+.++.+.|++.||.|..|..|.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 446777767778778888899999999999988764
No 259
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=23.93 E-value=56 Score=28.13 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=26.5
Q ss_pred EEeeccCccccCCCCCC--CCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecC
Q 020388 143 TIWTDVDGVYSADPRKV--SEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205 (327)
Q Consensus 143 ~~~tDV~Gi~t~dP~~~--~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~ 205 (327)
.+..|+|||+|.. +.. ++.......+.. +--++..+++.|+++.|.+..
T Consensus 9 ~~v~d~dGv~tdg-~~~~~~~g~~~~~~~~~-------------D~~~~~~L~~~Gi~laIiT~k 59 (169)
T TIGR02726 9 LVILDVDGVMTDG-RIVINDEGIESRNFDIK-------------DGMGVIVLQLCGIDVAIITSK 59 (169)
T ss_pred EEEEeCceeeECC-eEEEcCCCcEEEEEecc-------------hHHHHHHHHHCCCEEEEEECC
Confidence 3578999999863 211 122223332221 122466667778887665543
No 260
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=23.91 E-value=1.2e+02 Score=25.79 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=28.7
Q ss_pred EEEeecCCCCCc---ccHHHHHHHHHHhCCCCEEEEEe
Q 020388 243 LVNVEGTGMAGV---PGTANAIFGAVKDVGANVIMISQ 277 (327)
Q Consensus 243 ~IsIvG~~~~~~---~~v~a~if~~L~~~gI~V~~Isq 277 (327)
.|+++|..|.+. +++..++...|.+.||+.....+
T Consensus 105 ~IsLvGC~l~~~~~~~~fa~~f~~~L~~~gi~~~V~A~ 142 (157)
T PF11713_consen 105 KISLVGCSLADNNKQESFALQFAQALKKQGINASVSAY 142 (157)
T ss_dssp EEEEESSS-S-TTGGGSHHHHHHHHHHHHHHCEEEEEE
T ss_pred EEEEEEecccCCcccccHHHHHHHHHHhcCCcceEEEE
Confidence 778899888776 78999999999999998888765
No 261
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=23.53 E-value=4.9e+02 Score=22.94 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|++.|.....+. ..++.| |.+.+.+.++++++.....+.|++|-.+.+.
T Consensus 23 ~ng~~L~~~L~~~G~~g~~v~---~~iVpD--------d~~~I~~aL~~a~~~~~~DlIITTGGtg~g~----------- 80 (193)
T PRK09417 23 KGIPALEEWLASALTSPFEIE---TRLIPD--------EQDLIEQTLIELVDEMGCDLVLTTGGTGPAR----------- 80 (193)
T ss_pred chHHHHHHHHHHcCCCCceEE---EEECCC--------CHHHHHHHHHHHhhcCCCCEEEECCCCCCCC-----------
Confidence 356778888999876432221 123333 2345667777776422357888887444333
Q ss_pred chHHHHHHHHHhC
Q 020388 126 SDFSAAIMGALLR 138 (327)
Q Consensus 126 sD~~A~~lA~~l~ 138 (327)
-|.+.-.+...++
T Consensus 81 rDvTpeAv~~l~~ 93 (193)
T PRK09417 81 RDVTPEATLAVAD 93 (193)
T ss_pred CCcHHHHHHHHhC
Confidence 3777766666654
No 262
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=23.12 E-value=3.4e+02 Score=29.23 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=45.2
Q ss_pred CeeeEEeecC-----eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccccHHHHHHHHH
Q 020388 231 PVKGFATIDN-----LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKEVKAVAEALE 301 (327)
Q Consensus 231 ~v~~i~~~~~-----la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~d~~~av~~Lh 301 (327)
.+-.+.|..+ -+.|.|.+ .+.+|+++.+.+.+++.++||..++..+.. ..+.|.+.=.+...+-..+.
T Consensus 651 R~I~V~W~~~~~~~~~v~I~I~~---~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~ 727 (743)
T PRK10872 651 RIVDAVWGESYSSGYSLVVRVTA---NDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLG 727 (743)
T ss_pred eEEEeEecCCCCceeEEEEEEEE---cCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHH
Confidence 3556677542 24566664 478999999999999999999988743321 34566665555555444443
Q ss_pred H
Q 020388 302 S 302 (327)
Q Consensus 302 ~ 302 (327)
+
T Consensus 728 ~ 728 (743)
T PRK10872 728 K 728 (743)
T ss_pred H
Confidence 3
No 263
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=22.91 E-value=3.2e+02 Score=20.27 Aligned_cols=50 Identities=10% Similarity=-0.004 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCceEEEeeccCcc--ccCCCCCCCCCeEEeecCHHHHHHHH
Q 020388 128 FSAAIMGALLRAHQVTIWTDVDGV--YSADPRKVSEAVILRTLSYQEAWEMS 177 (327)
Q Consensus 128 ~~A~~lA~~l~A~~l~~~tDV~Gi--~t~dP~~~~~a~~i~~is~~ea~~l~ 177 (327)
..-+..|...||.-++++.+-+.. ....+...+..-+.-.|++++..+|.
T Consensus 47 ~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 47 DDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp HHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 456678889999999999911111 11111111223355666888777765
No 264
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=22.86 E-value=3.7e+02 Score=26.64 Aligned_cols=71 Identities=14% Similarity=0.280 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++.++.+.|++.|..+..+ .+..| |.+...+.+++..+ ..++.|++|-.+. |.-
T Consensus 205 n~~~l~a~l~~~G~~~~~~-----~~v~D--------d~~~i~~~l~~a~~--~~DlvIttGG~S~-----------G~~ 258 (411)
T PRK10680 205 NRLAVHLMLEQLGCEVINL-----GIIRD--------DPHALRAAFIEADS--QADVVISSGGVSV-----------GEA 258 (411)
T ss_pred HHHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHhcc--CCCEEEEcCCCCC-----------CCc
Confidence 4557889999999876443 23333 23344556655543 5578888774322 334
Q ss_pred hHHHHHHHHHhCCceEEEee
Q 020388 127 DFSAAIMGALLRAHQVTIWT 146 (327)
Q Consensus 127 D~~A~~lA~~l~A~~l~~~t 146 (327)
|++.-.+.. ++ +++||.
T Consensus 259 D~~~~al~~-lG--~~~f~~ 275 (411)
T PRK10680 259 DYTKTILEE-LG--EIAFWK 275 (411)
T ss_pred chHHHHHHh-cC--cEEEEE
Confidence 888777764 46 666654
No 265
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=22.85 E-value=3.6e+02 Score=26.38 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++.++.+.|++.|..+..+ .++.| |.+...+.+++.++ ...+.|++|-.+. |..
T Consensus 196 n~~~l~~~l~~~G~~~~~~-----~~v~D--------d~~~i~~~l~~a~~--~~DliittGG~s~-----------g~~ 249 (394)
T cd00887 196 NSYMLAALLRELGAEVVDL-----GIVPD--------DPEALREALEEALE--EADVVITSGGVSV-----------GDY 249 (394)
T ss_pred hHHHHHHHHHHCCCEEEEe-----ceeCC--------CHHHHHHHHHHHhh--CCCEEEEeCCCCC-----------Ccc
Confidence 4567888899999876433 22333 34556677777765 4678888774332 334
Q ss_pred hHHHHHHHHHhCCce
Q 020388 127 DFSAAIMGALLRAHQ 141 (327)
Q Consensus 127 D~~A~~lA~~l~A~~ 141 (327)
|++...+... +++.
T Consensus 250 D~~~~al~~~-g~~~ 263 (394)
T cd00887 250 DFVKEVLEEL-GGEV 263 (394)
T ss_pred hhHHHHHHhC-CCeE
Confidence 8888877754 5543
No 266
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.77 E-value=1.8e+02 Score=23.87 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccc-cHHHHHHHHHHHHH
Q 020388 257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK-EVKAVAEALESKFR 305 (327)
Q Consensus 257 v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~-d~~~av~~Lh~~f~ 305 (327)
...++-+.|.++||.+..|.+. +.++-+.+++. +.-+|.+.|.+.+.
T Consensus 51 ~~~~v~~~L~~~gI~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~L~ 98 (127)
T PRK10629 51 DGFYVYQHLDANGIHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRTLP 98 (127)
T ss_pred hHHHHHHHHHHCCCCcceEEee--CCEEEEEECCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999864 45666666664 44566777777653
No 267
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=22.74 E-value=3.9e+02 Score=27.33 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEE-EEeccccHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASS---EHSVC-FAVPEKEVKAVAEALES 302 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs-~~V~~~d~~~av~~Lh~ 302 (327)
.+.||+.+++-+.|.+++|||-..+-+-. ...+. +-+++.=-+.+++.|.+
T Consensus 459 ~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 459 LDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKA 513 (525)
T ss_pred cCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhc
Confidence 57899999999999999999966553221 23444 33555545666666654
No 268
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=22.70 E-value=3.2e+02 Score=29.11 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=46.4
Q ss_pred CeeeEEeecC-----eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc---cEEEEEeccccHHHHHHHHHH
Q 020388 231 PVKGFATIDN-----LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 231 ~v~~i~~~~~-----la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~---~sIs~~V~~~d~~~av~~Lh~ 302 (327)
.+-.+.+..+ .+.|.|.+ .+.+|+++.+...+++.++||..++..... ..+.|.|.=.+...+-..+.+
T Consensus 595 r~I~v~W~~~~~~~f~v~I~I~~---~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~~L~~ii~~ 671 (683)
T TIGR00691 595 KIIEVEWNASKPRRFIVDINIEA---VDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNYKHLLKIMLK 671 (683)
T ss_pred cEEEEEecCCCCceeEEEEEEEE---ecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCHHHHHHHHHH
Confidence 3445666543 35566664 478999999999999999999998854332 335566665666555555544
No 269
>PRK11899 prephenate dehydratase; Provisional
Probab=22.59 E-value=2.1e+02 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=34.6
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEec------cccHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVP------EKEVKAVAEALES 302 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~------~~d~~~av~~Lh~ 302 (327)
.+.||.+.++++.|+.+|||.-.|..-+. --.-.|.++ +..+.++++.|.+
T Consensus 202 ~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~ 261 (279)
T PRK11899 202 RNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRF 261 (279)
T ss_pred CCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998863222 123455544 2334556666654
No 270
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=22.38 E-value=2.5e+02 Score=20.81 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=36.7
Q ss_pred CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388 253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
..+|+.+++-..|...|..+.-+....+...-+.++.........+.|.+.|
T Consensus 13 ~~~GlA~~~a~~L~~~Gf~v~~~~n~~~~~~~t~I~y~~~~~~~A~~la~~l 64 (90)
T PF13399_consen 13 GVSGLAARVADALRNRGFTVVEVGNAPSSDETTTIYYGPGDEAAARELAAAL 64 (90)
T ss_pred CCcCHHHHHHHHHHHCCCceeecCCCCCCCCCEEEEECCCCHHHHHHHHHHC
Confidence 4589999999999999999977765443334455544544466667777766
No 271
>PRK08526 threonine dehydratase; Provisional
Probab=21.80 E-value=3.8e+02 Score=26.42 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=39.8
Q ss_pred ecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC-------CccEEEEEeccccHH
Q 020388 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS-------SEHSVCFAVPEKEVK 294 (327)
Q Consensus 238 ~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~-------s~~sIs~~V~~~d~~ 294 (327)
......+.+. +++.||-++++...+.+.+.||.-+.+.- .+..+.+.+.-.+.+
T Consensus 323 ~~r~~~~~~~---~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~ 383 (403)
T PRK08526 323 SYRKMKLHVT---LVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKE 383 (403)
T ss_pred cCCEEEEEEE---cCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHH
Confidence 3455566665 78999999999999999999999888732 245666777654443
No 272
>PF09194 Endonuc-BsobI: Restriction endonuclease BsobI; InterPro: IPR015277 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represent AvaI and BsoBI restriction endonucleases, both of which recognise the double-stranded sequence CYCGRG (where Y = T/C, and R = A/G) and cleave after C-1 []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1DC1_A.
Probab=21.71 E-value=2.4e+02 Score=26.55 Aligned_cols=56 Identities=18% Similarity=0.377 Sum_probs=41.5
Q ss_pred ccccccccHHHHHHHHHHHHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388 5 RNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (327)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~ 68 (327)
.+|+.||++.++=.+=+.|... +|..+-+.+|+..++.+.+.|.-+|+.-.+++.+
T Consensus 104 ~~fVeELv~RfLLtrGDsLGGs--------MRNigG~lAQ~KltR~Iis~L~i~gi~y~wl~~~ 159 (316)
T PF09194_consen 104 ENFVEELVFRFLLTRGDSLGGS--------MRNIGGSLAQRKLTRAIISTLSIAGISYKWLHSK 159 (316)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHTT--EEEEETT
T ss_pred hhHHHHHHHHHHHhcccccchh--------hhhhhHHHHHHHHHHHHHHHHHHcCCChhhhccc
Confidence 4667777777666555555544 4567777889999999999999999999999865
No 273
>PRK03059 PII uridylyl-transferase; Provisional
Probab=21.02 E-value=4e+02 Score=29.19 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=30.3
Q ss_pred cCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEE
Q 020388 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (327)
Q Consensus 239 ~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Is 276 (327)
.+...|.|.. .+.||+++++..+|+..|++|....
T Consensus 784 ~~~T~i~V~a---~DrpGLLa~Ia~~L~~~~l~I~~Ak 818 (856)
T PRK03059 784 GQYYILSVSA---NDRPGLLYAIARVLAEHRVSVHTAK 818 (856)
T ss_pred CCEEEEEEEe---CCcchHHHHHHHHHHHCCCeEEEEE
Confidence 3677888986 4789999999999999999999854
No 274
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=20.86 E-value=6e+02 Score=26.59 Aligned_cols=27 Identities=19% Similarity=0.541 Sum_probs=21.4
Q ss_pred HhhhhcHHHHHHHHHHHHHHcCCceeEEc
Q 020388 38 FVVGHGELWSAQMLAAVVRKNGIDCKWMD 66 (327)
Q Consensus 38 ~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~ 66 (327)
.++++|.. ++.++..|+++|++.+.++
T Consensus 404 II~G~Gr~--G~~va~~L~~~g~~vvvID 430 (621)
T PRK03562 404 IIAGFGRF--GQIVGRLLLSSGVKMTVLD 430 (621)
T ss_pred EEEecChH--HHHHHHHHHhCCCCEEEEE
Confidence 36777887 8899999999999875553
No 275
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=20.64 E-value=2.4e+02 Score=25.08 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCEEEEE-------ecC----CccEEEEEeccccHHHHHHHHHHH
Q 020388 257 TANAIFGAVKDVGANVIMIS-------QAS----SEHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 257 v~a~if~~L~~~gI~V~~Is-------q~~----s~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
.+.++.+.|.++||++..+= ++. ....|-++|+++|.+++...|.+.
T Consensus 59 ~~~~i~~~l~~~gI~~~~lKG~~l~~~Y~~~~~R~~~DiDlLV~~~d~~~a~~~L~~~ 116 (249)
T PF14907_consen 59 ELQEILAALNANGIPVILLKGAALAQLYPDPGLRPMGDIDLLVPPEDLERAVELLEEL 116 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEchHHHHHhCCCCCCCCCCCeEEEEeCCcHHHHHHHHHHc
Confidence 46788889999999887762 111 147899999999999999999664
No 276
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=20.41 E-value=3.1e+02 Score=21.07 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCceeEEE
Q 020388 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSAS 319 (327)
Q Consensus 254 ~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~ 319 (327)
.....+++.+.|++.|++...- +.+..| =-+-+++-++++.+|+..+..-....+..+++.
T Consensus 15 ~~~~V~~~i~~i~~sgl~y~v~---pm~T~i--EGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikId 75 (92)
T PF01910_consen 15 VSAYVAEAIEVIKESGLKYEVG---PMGTTI--EGELDEVMALIKEAHEALFEAGAKRVVTVIKID 75 (92)
T ss_dssp HHHHHHHHHHHHHTSSSEEEEE---TTEEEE--EEEHHHHHHHHHHHHHHHHCTTSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCceEEc---CCccEE--EecHHHHHHHHHHHHHHHHHcCCCeEEEEEEEE
Confidence 4567889999999999997773 333333 222445555566666655443333344444443
No 277
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=20.20 E-value=4.4e+02 Score=20.81 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=35.3
Q ss_pred CCCeeeecCCc-chHHHHHHHHHhCCceEEEeecc-CccccC-CCCCCCCCeEEeecCHHHHHHHH
Q 020388 115 DNIPTTLKRDG-SDFSAAIMGALLRAHQVTIWTDV-DGVYSA-DPRKVSEAVILRTLSYQEAWEMS 177 (327)
Q Consensus 115 ~g~~~~lgrgg-sD~~A~~lA~~l~A~~l~~~tDV-~Gi~t~-dP~~~~~a~~i~~is~~ea~~l~ 177 (327)
.|.+..+.||+ +...-...|...+|..++++.+. +|.+.. .+.......+.-.|+.++...|.
T Consensus 44 ~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 44 AGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 34455455543 22335777889999999999887 564321 11101111233456777666663
Done!