Query 020388
Match_columns 327
No_of_seqs 211 out of 1982
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cdq_A Aspartokinase; aspartat 100.0 1.8E-55 6.3E-60 439.1 27.6 289 15-306 114-484 (510)
2 3tvi_A Aspartokinase; structur 100.0 4.2E-55 1.4E-59 430.2 28.9 266 34-310 107-443 (446)
3 3c1m_A Probable aspartokinase; 100.0 1.7E-53 5.9E-58 423.0 30.4 281 15-304 96-381 (473)
4 2j0w_A Lysine-sensitive aspart 100.0 1.5E-53 5.1E-58 420.4 26.0 271 32-305 107-448 (449)
5 3l76_A Aspartokinase; alloster 100.0 1.2E-49 4E-54 405.2 26.4 272 30-307 60-419 (600)
6 3ab4_A Aspartokinase; aspartat 100.0 1.2E-47 4.3E-52 376.1 30.8 283 31-324 61-353 (421)
7 1ybd_A Uridylate kinase; alpha 99.9 4.1E-24 1.4E-28 193.8 16.2 159 33-215 71-238 (239)
8 2a1f_A Uridylate kinase; PYRH, 99.9 6.7E-24 2.3E-28 193.6 15.9 181 11-215 28-239 (247)
9 4a7w_A Uridylate kinase; trans 99.9 2.5E-23 8.6E-28 189.1 18.4 143 42-208 81-223 (240)
10 2jjx_A Uridylate kinase, UMP k 99.9 2E-23 6.8E-28 191.4 17.8 152 42-217 85-247 (255)
11 2j4j_A Uridylate kinase; trans 99.9 2.4E-23 8.3E-28 187.3 14.9 150 32-216 60-225 (226)
12 3ek6_A Uridylate kinase; UMPK 99.9 5.3E-23 1.8E-27 187.3 16.8 182 11-216 29-241 (243)
13 2j5v_A Glutamate 5-kinase; pro 99.9 2.1E-23 7.3E-28 200.4 13.3 170 34-218 70-259 (367)
14 1z9d_A Uridylate kinase, UK, U 99.9 7.8E-23 2.7E-27 187.1 16.3 184 11-218 27-242 (252)
15 2ap9_A NAG kinase, acetylgluta 99.9 1.5E-22 5.1E-27 189.7 17.3 170 33-217 92-291 (299)
16 3ll9_A Isopentenyl phosphate k 99.9 1.5E-22 5E-27 187.1 13.6 156 49-215 92-266 (269)
17 3nwy_A Uridylate kinase; allos 99.9 8.8E-22 3E-26 182.5 17.0 181 11-215 69-280 (281)
18 2ogx_A Molybdenum storage prot 99.9 3.9E-22 1.3E-26 184.8 13.1 159 33-217 98-272 (276)
19 2egx_A Putative acetylglutamat 99.9 1.5E-21 5E-26 180.3 16.4 167 33-214 68-268 (269)
20 2brx_A Uridylate kinase; UMP k 99.9 1.6E-21 5.3E-26 177.7 15.1 149 32-215 80-243 (244)
21 2ako_A Glutamate 5-kinase; str 99.9 2.8E-22 9.7E-27 183.1 10.0 161 34-207 63-232 (251)
22 2va1_A Uridylate kinase; UMPK, 99.9 3.2E-21 1.1E-25 176.8 16.7 155 37-215 91-255 (256)
23 3d40_A FOMA protein; fosfomyci 99.9 8E-22 2.7E-26 183.6 9.6 156 38-208 93-259 (286)
24 2ij9_A Uridylate kinase; struc 99.8 2E-20 7E-25 167.3 15.3 147 32-215 58-219 (219)
25 2rd5_A Acetylglutamate kinase- 99.8 2E-20 6.9E-25 175.1 15.9 160 41-215 113-297 (298)
26 2v5h_A Acetylglutamate kinase; 99.8 3.9E-20 1.3E-24 174.9 15.6 170 33-217 116-311 (321)
27 1gs5_A Acetylglutamate kinase; 99.8 2.7E-20 9.1E-25 170.7 13.8 157 41-215 79-257 (258)
28 2ogx_B Molybdenum storage prot 99.8 7.6E-20 2.6E-24 168.9 15.0 152 39-216 104-269 (270)
29 2bty_A Acetylglutamate kinase; 99.8 1.3E-19 4.5E-24 168.2 16.1 158 41-217 98-280 (282)
30 3ll5_A Gamma-glutamyl kinase r 99.8 3E-19 1E-23 163.1 13.5 152 45-214 83-248 (249)
31 3l86_A Acetylglutamate kinase; 99.8 2.6E-19 8.9E-24 165.8 12.9 148 49-216 117-278 (279)
32 2buf_A Acetylglutamate kinase; 99.8 1.9E-18 6.6E-23 161.8 17.0 167 33-217 93-297 (300)
33 1e19_A Carbamate kinase-like c 99.8 5.7E-18 2E-22 159.5 16.8 119 90-216 177-314 (314)
34 3k4o_A Isopentenyl phosphate k 99.7 2.6E-17 9E-22 151.5 13.7 147 48-217 100-265 (266)
35 2e9y_A Carbamate kinase; trans 99.7 7.2E-17 2.4E-21 152.2 13.4 118 90-216 177-315 (316)
36 3zzh_A Acetylglutamate kinase; 99.7 2E-16 7E-21 148.1 13.9 167 33-217 113-302 (307)
37 3d2m_A Putative acetylglutamat 99.7 4.4E-16 1.5E-20 153.5 13.8 166 33-217 109-304 (456)
38 4ab7_A Protein Arg5,6, mitocho 99.6 7E-15 2.4E-19 144.5 18.3 158 42-217 123-302 (464)
39 2we5_A Carbamate kinase 1; arg 99.6 1.4E-15 4.8E-20 143.0 12.3 119 90-215 173-309 (310)
40 3kzf_A Carbamate kinase; argin 99.6 4.3E-15 1.5E-19 138.7 11.9 122 90-216 179-316 (317)
41 3s6g_A N-acetylglutamate kinas 99.6 2.2E-14 7.5E-19 141.1 15.4 158 42-217 133-311 (460)
42 4go7_X Aspartokinase; transfer 99.5 1.5E-14 5.2E-19 127.4 8.5 75 231-307 105-179 (200)
43 3mah_A Aspartokinase; aspartat 99.5 3.6E-14 1.2E-18 120.4 8.0 119 184-307 34-152 (157)
44 2dtj_A Aspartokinase; protein- 99.5 8E-14 2.7E-18 120.8 9.1 127 181-309 26-161 (178)
45 3s6k_A Acetylglutamate kinase; 99.5 4.6E-14 1.6E-18 139.0 7.4 167 33-217 126-314 (467)
46 3s1t_A Aspartokinase; ACT doma 99.5 1.3E-13 4.5E-18 119.8 8.8 125 180-307 26-160 (181)
47 3c1m_A Probable aspartokinase; 99.4 6.3E-13 2.2E-17 131.7 9.5 121 186-307 336-470 (473)
48 2dt9_A Aspartokinase; protein- 99.4 6.9E-13 2.4E-17 113.6 7.7 122 182-307 28-159 (167)
49 2re1_A Aspartokinase, alpha an 99.3 2.1E-12 7.1E-17 110.6 8.2 123 181-306 36-166 (167)
50 4axs_A Carbamate kinase; oxido 99.3 1.3E-11 4.6E-16 116.5 11.9 118 90-215 194-331 (332)
51 3l76_A Aspartokinase; alloster 99.2 1.7E-11 5.7E-16 124.7 8.7 74 233-308 519-592 (600)
52 3ab4_A Aspartokinase; aspartat 99.2 3.4E-11 1.2E-15 117.6 8.8 123 183-307 277-408 (421)
53 4go7_X Aspartokinase; transfer 99.1 1.2E-10 4.2E-15 102.4 8.3 94 228-324 22-124 (200)
54 2dt9_A Aspartokinase; protein- 99.1 4.8E-10 1.6E-14 95.8 9.4 91 230-324 5-104 (167)
55 3s1t_A Aspartokinase; ACT doma 99.0 6.5E-10 2.2E-14 96.4 9.5 93 229-324 4-105 (181)
56 2re1_A Aspartokinase, alpha an 99.0 9E-10 3.1E-14 94.1 8.1 93 229-324 13-112 (167)
57 3mah_A Aspartokinase; aspartat 98.9 1.4E-09 4.8E-14 92.0 6.9 73 228-302 5-78 (157)
58 2dtj_A Aspartokinase; protein- 98.7 2.2E-08 7.6E-13 86.3 8.1 91 230-323 4-103 (178)
59 2cdq_A Aspartokinase; aspartat 98.3 1.3E-06 4.6E-11 86.9 9.7 62 230-293 330-391 (510)
60 2j0w_A Lysine-sensitive aspart 98.1 9E-07 3.1E-11 86.9 3.5 63 229-293 296-358 (449)
61 2f06_A Conserved hypothetical 98.1 7E-06 2.4E-10 67.7 7.1 60 243-303 71-131 (144)
62 3tvi_A Aspartokinase; structur 97.4 0.00011 3.8E-09 71.9 4.6 92 231-324 288-383 (446)
63 2f06_A Conserved hypothetical 96.6 0.013 4.5E-07 47.7 9.5 55 243-302 8-64 (144)
64 1zhv_A Hypothetical protein AT 95.1 0.1 3.4E-06 42.4 8.6 67 235-304 56-122 (134)
65 1zvp_A Hypothetical protein VC 94.3 0.11 3.8E-06 42.1 7.1 64 236-302 66-129 (133)
66 1zpv_A ACT domain protein; str 93.3 0.38 1.3E-05 35.3 8.0 59 241-302 5-68 (91)
67 1u8s_A Glycine cleavage system 91.7 0.66 2.3E-05 39.3 8.5 47 241-290 6-54 (192)
68 2nyi_A Unknown protein; protei 88.5 0.63 2.2E-05 39.7 5.6 37 240-279 92-128 (195)
69 2pc6_A Probable acetolactate s 87.9 0.83 2.8E-05 38.3 5.7 51 252-302 12-68 (165)
70 2f1f_A Acetolactate synthase i 87.8 0.93 3.2E-05 37.9 6.0 57 243-302 5-67 (164)
71 2ko1_A CTR148A, GTP pyrophosph 86.3 2.8 9.6E-05 30.0 7.3 49 242-293 6-56 (88)
72 2fgc_A Acetolactate synthase, 83.8 1.8 6.2E-05 37.1 5.9 57 243-304 31-91 (193)
73 3o1l_A Formyltetrahydrofolate 80.7 2.6 8.9E-05 38.7 6.1 35 242-279 23-57 (302)
74 3kbq_A Protein TA0487; structu 79.2 6.3 0.00022 33.0 7.6 70 46-141 23-92 (172)
75 1u8s_A Glycine cleavage system 78.5 8.5 0.00029 32.2 8.4 37 240-279 92-128 (192)
76 3p96_A Phosphoserine phosphata 78.3 3.2 0.00011 39.2 6.2 38 240-280 11-48 (415)
77 2nyi_A Unknown protein; protei 78.0 3.3 0.00011 35.1 5.6 63 240-305 4-70 (195)
78 3n0v_A Formyltetrahydrofolate 77.7 3.8 0.00013 37.2 6.2 35 241-278 8-42 (286)
79 3lou_A Formyltetrahydrofolate 75.6 4.5 0.00015 36.9 6.1 36 240-278 9-44 (292)
80 3nrb_A Formyltetrahydrofolate 73.6 8.2 0.00028 35.0 7.3 36 240-278 6-41 (287)
81 3obi_A Formyltetrahydrofolate 73.0 3.9 0.00013 37.2 5.0 35 241-278 6-40 (288)
82 1y7p_A Hypothetical protein AF 70.1 5.3 0.00018 34.9 4.9 58 242-302 5-69 (223)
83 2jhe_A Transcription regulator 60.0 40 0.0014 26.9 8.4 47 244-294 3-49 (190)
84 2fts_A Gephyrin; gephyrin, neu 57.1 28 0.00096 33.2 7.8 73 47-146 209-281 (419)
85 1mkz_A Molybdenum cofactor bio 55.4 27 0.00092 28.8 6.5 69 46-138 28-96 (172)
86 3iwt_A 178AA long hypothetical 54.6 30 0.001 28.4 6.7 68 46-137 40-107 (178)
87 1y5e_A Molybdenum cofactor bio 52.3 32 0.0011 28.1 6.5 69 46-138 31-99 (169)
88 3mwb_A Prephenate dehydratase; 51.3 1.4E+02 0.0048 27.1 11.2 127 160-303 127-270 (313)
89 2pjk_A 178AA long hypothetical 49.9 37 0.0013 28.2 6.5 68 47-138 41-108 (178)
90 2is8_A Molybdopterin biosynthe 43.4 38 0.0013 27.6 5.5 67 47-137 22-88 (164)
91 1g8l_A Molybdopterin biosynthe 41.8 91 0.0031 29.5 8.6 70 47-145 205-274 (411)
92 1uz5_A MOEA protein, 402AA lon 39.4 75 0.0026 30.0 7.6 70 47-145 208-277 (402)
93 3pzy_A MOG; ssgcid, seattle st 38.6 81 0.0028 25.7 6.8 66 47-138 28-93 (164)
94 3rfq_A Pterin-4-alpha-carbinol 36.2 70 0.0024 26.8 6.1 76 38-138 34-116 (185)
95 3mtj_A Homoserine dehydrogenas 35.8 82 0.0028 30.2 7.3 50 252-301 367-424 (444)
96 3m05_A Uncharacterized protein 35.8 1.1E+02 0.0038 23.6 6.7 52 254-305 14-70 (114)
97 1sc6_A PGDH, D-3-phosphoglycer 35.7 65 0.0022 30.4 6.5 36 240-278 330-365 (404)
98 2g2c_A Putative molybdenum cof 35.4 52 0.0018 26.8 5.1 66 47-137 26-95 (167)
99 1jlj_A Gephyrin; globular alph 34.4 1.1E+02 0.0038 25.4 7.2 68 46-137 34-104 (189)
100 1uuy_A CNX1, molybdopterin bio 34.3 1.2E+02 0.004 24.6 7.1 67 48-138 27-98 (167)
101 3lh2_S 4E10_1VI7A_S0_002_N (T8 30.8 83 0.0028 21.8 4.9 48 256-304 17-64 (76)
102 2pbq_A Molybdenum cofactor bio 30.7 1.6E+02 0.0054 24.1 7.4 67 47-138 26-95 (178)
103 1ygy_A PGDH, D-3-phosphoglycer 30.6 90 0.0031 30.4 6.8 52 251-302 461-516 (529)
104 1di6_A MOGA, molybdenum cofact 30.3 1.5E+02 0.0052 24.8 7.4 69 47-137 24-92 (195)
105 2xhz_A KDSD, YRBH, arabinose 5 26.0 1.1E+02 0.0037 24.5 5.6 79 117-204 51-131 (183)
106 1yj7_A ESCJ; mixed alpha/beta, 25.9 1.4E+02 0.0048 24.6 6.2 45 257-303 13-57 (171)
107 2qmx_A Prephenate dehydratase; 22.9 3.4E+02 0.012 24.1 8.6 131 160-301 120-266 (283)
108 3eeq_A Putative cobalamin bios 21.7 70 0.0024 29.5 3.8 59 90-153 69-132 (336)
109 3k5p_A D-3-phosphoglycerate de 21.5 1.7E+02 0.0058 27.7 6.6 45 240-288 342-386 (416)
110 2yxg_A DHDPS, dihydrodipicolin 21.4 2.7E+02 0.0093 24.5 7.7 78 49-146 24-103 (289)
111 2j9c_A GLNK1, hypothetical nit 21.3 2.3E+02 0.0079 21.4 6.3 52 255-306 12-85 (119)
112 2wkj_A N-acetylneuraminate lya 21.3 2.7E+02 0.0093 24.8 7.7 78 49-146 35-114 (303)
113 2hfv_A Hypothetical protein RP 21.3 74 0.0025 23.9 3.2 57 243-302 23-86 (97)
114 3ewi_A N-acylneuraminate cytid 21.1 1.4E+02 0.0047 24.1 5.2 50 143-205 11-61 (168)
115 2gqc_A Rhomboid intramembrane 20.7 92 0.0031 21.6 3.5 56 253-311 10-65 (70)
116 2ehh_A DHDPS, dihydrodipicolin 20.6 2.7E+02 0.0092 24.6 7.5 78 49-146 24-103 (294)
117 3cpr_A Dihydrodipicolinate syn 20.1 3.3E+02 0.011 24.2 8.0 78 49-146 40-119 (304)
118 1xky_A Dihydrodipicolinate syn 20.0 2.6E+02 0.0087 24.9 7.3 78 49-146 36-115 (301)
119 4dpp_A DHDPS 2, dihydrodipicol 20.0 2.9E+02 0.01 25.5 7.8 77 50-146 84-162 (360)
No 1
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=100.00 E-value=1.8e-55 Score=439.14 Aligned_cols=289 Identities=28% Similarity=0.438 Sum_probs=251.3
Q ss_pred HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCC---ch
Q 020388 15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---FS 86 (327)
Q Consensus 15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~---~~ 86 (327)
.++..++.|++++. ++.+++.+|+++|+||++|+.+++.+|+++|++++++++.++.+.+++.+++..++ +.
T Consensus 114 ~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~~ 193 (510)
T 2cdq_A 114 VILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYP 193 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHH
T ss_pred HHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHHH
Confidence 46667777777643 57889999999999999999999999999999999999999955566666655443 22
Q ss_pred HHHHHHHH-HhhcCCCceEEecCceecCC-CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388 87 ESEKRLEK-WFSQSPSNTIIATGFIASTP-DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI 164 (327)
Q Consensus 87 ~~~~~i~~-~l~~~~~~vpVv~Gfi~~~~-~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~ 164 (327)
...+.+.+ +++ .+.|||++||+|.++ +|.++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|++
T Consensus 194 ~~~~~l~~~Ll~--~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~ 271 (510)
T 2cdq_A 194 AVAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATP 271 (510)
T ss_dssp HHHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCB
T ss_pred HHHHHHHHHHHh--CCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEE
Confidence 23455554 556 789999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred EeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCC-CC-------------------cch
Q 020388 165 LRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV-DE-------------------NED 224 (327)
Q Consensus 165 i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~-~~-------------------~~~ 224 (327)
|++++|+|+.+|+++|+++|||+|+++|+++|||++|+|+++|+.+||+|.++.. +. ..|
T Consensus 272 I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~~~~~~~~~v~gIa~~~~~~~I~i~~~~m 351 (510)
T 2cdq_A 272 VPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRM 351 (510)
T ss_dssp CCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCCCTTCCEEEEEEEEEEEEEEEECGGG
T ss_pred ecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEeccccccccccccccccCCeEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999986421 00 000
Q ss_pred -------------------------------------hhh---------------hcCCeeeEEeecCeeEEEeecCCCC
Q 020388 225 -------------------------------------EQI---------------IDSPVKGFATIDNLALVNVEGTGMA 252 (327)
Q Consensus 225 -------------------------------------~~~---------------~~~~v~~i~~~~~la~IsIvG~~~~ 252 (327)
.+. ..+.+..+.+.+++|+|++||. |+
T Consensus 352 ~~~~g~~~~if~~la~~~I~vd~I~sse~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m~ 430 (510)
T 2cdq_A 352 LGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-VQ 430 (510)
T ss_dssp TTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-GG
T ss_pred CCcccHHHHHHHHHHHcCCcEEEEEeCCCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-CC
Confidence 000 0112356888999999999999 99
Q ss_pred CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
..||+++++|++|+++||||.||+||+|+.+|||+|+++|.++|+++||+.|+.
T Consensus 431 ~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH~~f~~ 484 (510)
T 2cdq_A 431 HSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFE 484 (510)
T ss_dssp GHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHHS
T ss_pred CChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999986
No 2
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=4.2e-55 Score=430.18 Aligned_cols=266 Identities=31% Similarity=0.444 Sum_probs=230.0
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (327)
Q Consensus 34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~ 113 (327)
+.+|+++|+||+||+++|+.+| ++.++++++++++++ + ...+++.+.++++++++ .+.|||++||+|.+
T Consensus 107 ~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~l~--~~~v~Vv~Gf~g~~ 175 (446)
T 3tvi_A 107 ASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDK---S-GCFDEKKSYEKIKEKVL--SCNKAVIPGFYGSS 175 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC------CBCHHHHHHHHHHHTT--TCSSEECCCSEEEC
T ss_pred ccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCC---C-CceehHhhHHHHHHHHh--cCCeEEeeCceecC
Confidence 7789999999999999999996 589999999988776 2 23566667789999997 78999999999999
Q ss_pred CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHH
Q 020388 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193 (327)
Q Consensus 114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~ 193 (327)
++|.++|+||||||++|+++|.+|+|+++++|||||||||+||+++|+|+++++++|+|+.+|+++|+++|||+|+++|+
T Consensus 176 ~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~ 255 (446)
T 3tvi_A 176 FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVK 255 (446)
T ss_dssp TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHH
T ss_pred CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCEEEeecCCCCCCceEEeCCCCC--C--------------------cchh--------------------------
Q 020388 194 RYDIPIVIRNIFNLSVPGIMICRPPVD--E--------------------NEDE-------------------------- 225 (327)
Q Consensus 194 ~~~I~v~I~n~~~~e~~GT~I~~~~~~--~--------------------~~~~-------------------------- 225 (327)
++|||++|+|+++|+.+||+|.+.... . ..|.
T Consensus 256 ~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~ 335 (446)
T 3tvi_A 256 DSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG 335 (446)
T ss_dssp HSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE
T ss_pred HcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC
Confidence 999999999999999999999754210 0 0000
Q ss_pred ----------hhhc-------------CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCcc
Q 020388 226 ----------QIID-------------SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEH 282 (327)
Q Consensus 226 ----------~~~~-------------~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~ 282 (327)
.... -....+.+.+++|+|++||.+|+++||+++++|++|+++||||.||+|++|+.
T Consensus 336 ~~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei 415 (446)
T 3tvi_A 336 VDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEI 415 (446)
T ss_dssp TTEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTT
T ss_pred CCEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCc
Confidence 0000 01245888899999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccHHHHHHHHHHHHHhhhcC
Q 020388 283 SVCFAVPEKEVKAVAEALESKFREALNA 310 (327)
Q Consensus 283 sIs~~V~~~d~~~av~~Lh~~f~~~~~~ 310 (327)
+|||+|+++|.++|+++||+.||++...
T Consensus 416 ~Is~vV~~~d~~~Av~aLH~~ff~~~~~ 443 (446)
T 3tvi_A 416 NVIVGVETVDFEKAVKSIYNAFNEGHHH 443 (446)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHC-----
T ss_pred eEEEEEcHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999987554
No 3
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=100.00 E-value=1.7e-53 Score=423.04 Aligned_cols=281 Identities=40% Similarity=0.575 Sum_probs=258.7
Q ss_pred HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHH
Q 020388 15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE 89 (327)
Q Consensus 15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (327)
.++..++.|++++. ++++++.+|+++++||++|+.+++.+|+++|++++++++.++.++++..+++.++++....
T Consensus 96 ~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~t~~~~~~~~~~~~~~~ 175 (473)
T 3c1m_A 96 IIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVK 175 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEEECSCTTSCCEEEECHH
T ss_pred HHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEEEccCCCCccccHhhhH
Confidence 67777788777754 5889999999999999999999999999999999999999996666667776666544556
Q ss_pred HHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecC
Q 020388 90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS 169 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is 169 (327)
+.++.+++ .+.|||++||+|.+++|.++++||||||++|+.+|.+|+|+.+++||||||||++||+.+|+++++++++
T Consensus 176 ~~i~~ll~--~g~ipVv~G~~g~~~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dP~~~~~a~~i~~is 253 (473)
T 3c1m_A 176 ERLLPLLK--EGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLS 253 (473)
T ss_dssp HHHHHHHH--TTCEEEEESSEEEETTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEE
T ss_pred HHHHHHHh--CCcEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCCcceeCCCCCCCCCeEecccC
Confidence 88888887 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecC
Q 020388 170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGT 249 (327)
Q Consensus 170 ~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~ 249 (327)
|.|+.+++++|+++|||+|+.+|.++|+|++|+|+++|+.+||+|.+... . ....+++|+..+|+++|+++|.
T Consensus 254 ~~e~~~l~~~g~~~m~~~a~~~a~~~gi~v~I~~~~~~~~~GT~i~~~~~-~------~~~~v~gIa~~~~~a~Isv~g~ 326 (473)
T 3c1m_A 254 YIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDME-M------SDSIVKAISTIKNVALINIFGA 326 (473)
T ss_dssp HHHHHHHHHTTCTTSCGGGHHHHHHHTCCEEEEETTSTTSCCEEEESCCC-C------CTTSCCEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCEEEEEecCCCCCceEEEecccc-c------cccccchhhccCCeEEEEEecC
Confidence 99999999999999999999999999999999999999889999987532 1 2346899999999999999999
Q ss_pred CCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388 250 GMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 250 ~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
+|.+.||+.+++|+.|+++||+|+||+|++|+.+|||+|++++.+++++.||++|
T Consensus 327 ~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~~Is~~V~~~d~~~a~~~L~~~l 381 (473)
T 3c1m_A 327 GMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREF 381 (473)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEEEGGGHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEechHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988
No 4
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=100.00 E-value=1.5e-53 Score=420.40 Aligned_cols=271 Identities=31% Similarity=0.560 Sum_probs=234.8
Q ss_pred ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhc-CCCceEEecCce
Q 020388 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ-SPSNTIIATGFI 110 (327)
Q Consensus 32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~vpVv~Gfi 110 (327)
+++.+|.++|+||.+|+.+++.+|+++|++++++++.++ +.+++.+++..++...+.+..++.++. ..+.|||++||+
T Consensus 107 ~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~~~~~~~~~~~~~~~~~~l~~l~~~~IpVv~Gf~ 185 (449)
T 2j0w_A 107 SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVITQGFI 185 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTTSCCBCHHHHHHHHHHHTHHHHHHSEEEEESSE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCCCCccccHhHhHHHHHHHHHHHhcCCEEEEeCCe
Confidence 589999999999999999999999999999999999999 456667776667665543333322221 123599999999
Q ss_pred ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (327)
Q Consensus 111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~ 190 (327)
|.+++|.++++||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+|+.+++++|+++|||+|++
T Consensus 186 g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~ 265 (449)
T 2j0w_A 186 GSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLL 265 (449)
T ss_dssp EECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHH
T ss_pred eeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEeecCCCCCCceEEeCCCCCC----------------------cc--------------------h----
Q 020388 191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDE----------------------NE--------------------D---- 224 (327)
Q Consensus 191 ~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~----------------------~~--------------------~---- 224 (327)
+|.++|||++|+|+++|+.+||+|.++.... .. +
T Consensus 266 ~a~~~gi~v~I~~~~~p~~~GT~I~~~~~~~~~v~gIa~~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss 345 (449)
T 2j0w_A 266 PAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS 345 (449)
T ss_dssp HHHHHTCCEEEEESSCTTSCCEEEESCCSSCCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE
T ss_pred HHHHCCCeEEEEECCCCCCCeeEEecccccccccccceeeCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC
Confidence 9999999999999999988999998652100 00 0
Q ss_pred -------hhhh----c-------------CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC
Q 020388 225 -------EQII----D-------------SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS 280 (327)
Q Consensus 225 -------~~~~----~-------------~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s 280 (327)
.... . ..+..+.+.+++|+|++||.+|+..||+++++|++|++ |||.||+|++|
T Consensus 346 ~~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~S 423 (449)
T 2j0w_A 346 EVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGAS 423 (449)
T ss_dssp TTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSC
T ss_pred CCeEEEEEeccccchhhHHHHHHHHHHHhccCCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCC
Confidence 0000 0 00346888899999999999999999999999999965 99999999999
Q ss_pred ccEEEEEeccccHHHHHHHHHHHHH
Q 020388 281 EHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 281 ~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
+.+|||+|+++|.++|+++||++|+
T Consensus 424 e~~Is~vV~~~d~~~Av~~lh~~f~ 448 (449)
T 2j0w_A 424 SHNLCFLVPGEDAEQVVQKLHSNLF 448 (449)
T ss_dssp TTEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred CcEEEEEEeHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997
No 5
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=100.00 E-value=1.2e-49 Score=405.15 Aligned_cols=272 Identities=29% Similarity=0.441 Sum_probs=231.4
Q ss_pred CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCc
Q 020388 30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF 109 (327)
Q Consensus 30 ~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf 109 (327)
..+++.+|.++++||.+|+.+++.+|+++|++++++++.++.+++++.+++.++..... +.++++++ .+.|||++||
T Consensus 60 ~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~-~~i~~ll~--~g~IpVv~Gf 136 (600)
T 3l76_A 60 NPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRP-DRLEHHLR--EGKVVVVAGF 136 (600)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEE-CCHHHHHT--TTCEEEEECE
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccH-HHHHHHHh--CCCEEEEECC
Confidence 34678899999999999999999999999999999999999888876665544432111 56788887 7899999999
Q ss_pred eecCCCC--CeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHh
Q 020388 110 IASTPDN--IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (327)
Q Consensus 110 i~~~~~g--~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~ 187 (327)
+|.+++| .++++||||||++|+.+|.+|+|+++++||||||||++||+++|+|+++++++|+|+.+|+++|+++|||+
T Consensus 137 ~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~ 216 (600)
T 3l76_A 137 QGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPR 216 (600)
T ss_dssp EEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHH
T ss_pred eecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHH
Confidence 9999999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCCCEEEeecCCCCCCceEEeCCCC---------CCc-----------------ch-----------------
Q 020388 188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV---------DEN-----------------ED----------------- 224 (327)
Q Consensus 188 a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~---------~~~-----------------~~----------------- 224 (327)
|+++|+++|||++|+|++++ .+||+|.++.. ... .+
T Consensus 217 a~~~a~~~gipv~I~n~~~~-~~GT~I~~~~~~~~~~~~~~~~~~v~gi~~~~~~~~i~i~~~~~~~g~~~~if~~La~~ 295 (600)
T 3l76_A 217 AVEIARNYGIPLVVRSSWSD-EPGTKVVAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALLRVPDRPGVASKLFRDIAQQ 295 (600)
T ss_dssp HHHHHHHHTCCEEEEETTCC-SCCEEEECCCCCSCCCCCCBSSCSCCEEEEECCCEEEEEEEEECSTTHHHHHHHHHHHT
T ss_pred HHHHHHHCCCeEEEEECCCC-CCCeEEecCCccccccccccccCcceEEEeeCCEEEEEEeCCCCcccHHHHHHHHHHHc
Confidence 99999999999999999984 68999975431 000 00
Q ss_pred -------hh---------------------------hhc---------CCeeeEEeecCeeEEEeecCCCCCcccHHHHH
Q 020388 225 -------EQ---------------------------IID---------SPVKGFATIDNLALVNVEGTGMAGVPGTANAI 261 (327)
Q Consensus 225 -------~~---------------------------~~~---------~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~i 261 (327)
.| ... ..+..+.+.+++|+|+++|.+|++.||+++++
T Consensus 296 ~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~i 375 (600)
T 3l76_A 296 QVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEIIVEKGIAKIAIAGAGMIGRPGIAAKM 375 (600)
T ss_dssp TCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEEEECSEEEEEEECGGGTTCTTHHHHH
T ss_pred CCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeEecCCeEEEEEECCCcccCccHHHHH
Confidence 00 000 13457888999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 262 FGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 262 f~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
|++|+++||||.||+ +|+.+|||+|+++|.++|+++||++|+.+
T Consensus 376 f~aL~~~~Ini~~is--tSe~~Is~vI~~~d~~~Av~aLh~~f~~~ 419 (600)
T 3l76_A 376 FKTLADVGVNIEMIS--TSEVKVSCVIDQRDADRAIAALSNAFGVT 419 (600)
T ss_dssp HHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCcEEEEe--cCCCEEEEEEcHHHHHHHHHHHHHhhccc
Confidence 999999999999999 67999999999999999999999999875
No 6
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=1.2e-47 Score=376.07 Aligned_cols=283 Identities=25% Similarity=0.361 Sum_probs=217.0
Q ss_pred CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (327)
Q Consensus 31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi 110 (327)
.+++..|.+++.||.+++.+++.+|+++|+++.++++.++.++++..+++..+... ..+.++++++ .+.|||++||+
T Consensus 61 ~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~-~~~~i~~~l~--~g~ipVv~g~~ 137 (421)
T 3ab4_A 61 PPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDV-TPGRVREALD--EGKICIVAGFQ 137 (421)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------------C-CHHHHHHHHH--TTCEEEC----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechh-hHHHHHHHHh--CCCEEEEeCCc
Confidence 45788999999999999999999999999999999999986666655544333221 1277888888 88999999999
Q ss_pred ecCCC-CCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhH
Q 020388 111 ASTPD-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI 189 (327)
Q Consensus 111 ~~~~~-g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~ 189 (327)
|.+++ |.++++||||||++|+.+|.+|+|+++++||||||||++||+.+|++++|++++|+|+.+|+++|++++||+|+
T Consensus 138 g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~ 217 (421)
T 3ab4_A 138 GVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSV 217 (421)
T ss_dssp --------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHH
T ss_pred CcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCC
Q 020388 190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVG 269 (327)
Q Consensus 190 ~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~g 269 (327)
.+|.++|||++|+|+++| .+||+|.++..+. . .....+++++..+|+++|++.| |.+.|++++++|+.|+++|
T Consensus 218 ~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~-~---~~~~~i~~i~~~~~~~~i~v~~--~~~~~g~~~~If~~La~~~ 290 (421)
T 3ab4_A 218 EYARAFNVPLRVRSSYSN-DPGTLIAGSMEDI-P---VEEAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAE 290 (421)
T ss_dssp HHHHHTTCCEEEEESSSC-CCCEEECSCGGGS-C---TTTCCCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEecCcCC-CCCeEEEecCccc-c---cccCccceEEeeCCEEEEEEec--cCCcccHHHHHHHHHHHcC
Confidence 999999999999999998 6899997651110 0 0234699999999999999998 7788999999999999999
Q ss_pred CCEEEEEecCCc-----cEEEEEeccccHHHHHHHHHHHHHhhhcCCCCce----eEEEEeecc
Q 020388 270 ANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ----FSASILSQD 324 (327)
Q Consensus 270 I~V~~Isq~~s~-----~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~----~~~~~~~~~ 324 (327)
|+|+||+|++++ .+|+|+|++++.+++.+.|++ +..++....++- -.++|+|..
T Consensus 291 I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~-~~~~~~~~~v~~~~~~a~vsvVG~g 353 (421)
T 3ab4_A 291 INIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKK-LQVQGNWTNVLYDDQVGKVSLVGAG 353 (421)
T ss_dssp CCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHH-HHTTTTCSEEEEECCEEEEEEECGG
T ss_pred CcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHH-HHHHcCCceEEEeCCeEEEEEEccC
Confidence 999999997664 699999999999999988876 555554322221 337777753
No 7
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.91 E-value=4.1e-24 Score=193.81 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=131.3
Q ss_pred hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (327)
Q Consensus 33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~ 112 (327)
++..+.+.++|+.+++.++..+|.+.|+++.++++.+...+.+ ++... +.+ ++++ .+.|||++|+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~--------~~~~~-~~~-~ll~--~g~ipVv~g~~g- 137 (239)
T 1ybd_A 71 RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAE--------TYARP-KAI-QYLE--EGKVVIFAAGTG- 137 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCE--------ECCHH-HHH-HHHH--TTCEEEEESTTS-
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccccc--------chhHH-HHH-HHHh--CCcEEEEECCcc-
Confidence 3445667788999999999999999999999999877643322 11111 334 6777 789999987632
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHH
Q 020388 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV 192 (327)
Q Consensus 113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a 192 (327)
. .++++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++ |.++|||+|+.+|
T Consensus 138 ----~----~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a 206 (239)
T 1ybd_A 138 ----N----PFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALC 206 (239)
T ss_dssp ----S----TTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHH
T ss_pred ----C----CCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHH
Confidence 1 2367899999999999999999999999999999999999999999999998875 8899999999999
Q ss_pred HhCCCCEEEeecCCCC---------CCceEEe
Q 020388 193 MRYDIPIVIRNIFNLS---------VPGIMIC 215 (327)
Q Consensus 193 ~~~~I~v~I~n~~~~e---------~~GT~I~ 215 (327)
.++|+|++|.|+++|+ ..||+|.
T Consensus 207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~ 238 (239)
T 1ybd_A 207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238 (239)
T ss_dssp HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEc
Confidence 9999999999987653 4588875
No 8
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.91 E-value=6.7e-24 Score=193.57 Aligned_cols=181 Identities=18% Similarity=0.208 Sum_probs=138.0
Q ss_pred ccHHHHHHHHHHHHhhhc---------C-------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388 11 LSYEFIRSTYNFLSNVDS---------G-------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (327)
Q Consensus 11 ~~~~~i~~~~~~l~~~~~---------~-------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~ 68 (327)
+..+.++...+.+..+.. + ..+++..|.+.++|+.+++.++..+|.+.|+++.++++.
T Consensus 28 ~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~ 107 (247)
T 2a1f_A 28 IDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF 107 (247)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc
Confidence 445667777766665432 1 134455677888999999999999999999999999988
Q ss_pred ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148 (327)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV 148 (327)
+...+.+ . + ....++++++ .+.|||++|+. |. .++++|++|+.+|.+|+|++++|||||
T Consensus 108 ~~~~~~~-~-------~--~~~~~~~ll~--~g~ipVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~liilTDV 166 (247)
T 2a1f_A 108 QLNGICD-T-------Y--NWSEAIKMLR--EKRVVIFSAGT-----GN----PFFTTDSTACLRGIEIEADVVLKATKV 166 (247)
T ss_dssp CCTTTSE-E-------C--CHHHHHHHHH--TTCEEEEESTT-----SC----SSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ccccccc-h-------h--hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCCcHHHHHHHHHhCCCCEEEEEeCC
Confidence 7643321 1 1 1233567787 88999999842 22 236789999999999999999999999
Q ss_pred CccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (327)
Q Consensus 149 ~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~ 215 (327)
||||++||+.+|+++++++++++|+.++ |.++|+|+|+.+|.++|+|++|.|+++| +..||+|.
T Consensus 167 dGvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~ 239 (247)
T 2a1f_A 167 DGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 239 (247)
T ss_dssp SSCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred CcccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEe
Confidence 9999999999999999999999999875 8899999999999999999999998654 35689885
No 9
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.91 E-value=2.5e-23 Score=189.15 Aligned_cols=143 Identities=21% Similarity=0.282 Sum_probs=121.9
Q ss_pred hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeee
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL 121 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~l 121 (327)
....+++.+++.+|+++|++++++++.++...+. ..+. +.+.++++ .+.|||++|+.+ ..
T Consensus 81 la~~~n~~l~~~~l~~~G~~av~lt~~d~~~~~~------~~~~----~~i~~lL~--~g~ipVi~~~~g-----~~--- 140 (240)
T 4a7w_A 81 LATVINAVAMQEALEHIGLDTRVQSAIEIKEICE------SYIY----RKAIRHLE--KGRVVIFGAGTG-----NP--- 140 (240)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSE------ECCH----HHHHHHHH--TTCEEEEESTTS-----CT---
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecHHHcCcccC------cCcH----HHHHHHHH--CCCEEEEeCCCC-----CC---
Confidence 4567889999999999999999999988753221 1233 66778888 899999998522 21
Q ss_pred cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEE
Q 020388 122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201 (327)
Q Consensus 122 grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I 201 (327)
.+.+|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++ |.++|+++|+.+|.++|+|++|
T Consensus 141 -~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I 216 (240)
T 4a7w_A 141 -FFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVV 216 (240)
T ss_dssp -TSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEE
T ss_pred -CCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEE
Confidence 245799999999999999999999999999999999999999999999998764 8899999999999999999999
Q ss_pred eecCCCC
Q 020388 202 RNIFNLS 208 (327)
Q Consensus 202 ~n~~~~e 208 (327)
.|++.|.
T Consensus 217 ~~g~~~~ 223 (240)
T 4a7w_A 217 CNMFKKG 223 (240)
T ss_dssp EESSSTT
T ss_pred ECCCCcc
Confidence 9997653
No 10
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.91 E-value=2e-23 Score=191.39 Aligned_cols=152 Identities=18% Similarity=0.279 Sum_probs=126.7
Q ss_pred hcHHHHHHHHHHHHHH-cCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeee
Q 020388 42 HGELWSAQMLAAVVRK-NGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT 120 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~-~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~ 120 (327)
.+..+++.+|..+|++ +|+++.++++.++..+++ ..+. ..+.++++ .+.|||++| + ++++.++
T Consensus 85 ~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~------~~~~----~~~~~lL~--~g~IpVi~g--g-~g~~~vt- 148 (255)
T 2jjx_A 85 LGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAE------PYIR----LRAVHHLD--NGYIVIFGG--G-NGQPFVT- 148 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEEEESSCCCSSSE------ECCH----HHHHHHHH--TTCEEEEES--T-TSCSSCC-
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEecHHHcCcccC------cccH----HHHHHHHh--CCcEEEEeC--C-CCCCccc-
Confidence 3447788888999999 999999999988764432 1222 33447787 889999998 3 3333333
Q ss_pred ecCCcchHHHHHHHHHhCCceEEEee-ccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCE
Q 020388 121 LKRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI 199 (327)
Q Consensus 121 lgrggsD~~A~~lA~~l~A~~l~~~t-DV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v 199 (327)
+|++|+.+|.+|+|+++++|| ||||||++||+++|+++++++++|+|+.++ |.++|+|.|+++|.++|+|+
T Consensus 149 -----tD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v 220 (255)
T 2jjx_A 149 -----TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPA 220 (255)
T ss_dssp -----SHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCE
T ss_pred -----hHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeE
Confidence 499999999999999999999 999999999999999999999999988775 88999999999999999999
Q ss_pred EEeecCCCC---------CCceEEeCC
Q 020388 200 VIRNIFNLS---------VPGIMICRP 217 (327)
Q Consensus 200 ~I~n~~~~e---------~~GT~I~~~ 217 (327)
+|.|+++|+ ..||+|.++
T Consensus 221 ~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 221 HVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp EEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred EEEeCCCchHHHHHhcCCCCceEEecC
Confidence 999998773 579999874
No 11
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.90 E-value=2.4e-23 Score=187.34 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=125.2
Q ss_pred ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (327)
Q Consensus 32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~ 111 (327)
++...+.+.+.|+.+++.+++..|+++|+++ + .+++ ++++++++ .+.|||++| +
T Consensus 60 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------------~------~~~~----~~i~~ll~--~g~ipVi~g--g 113 (226)
T 2j4j_A 60 GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH------------V------PQSL----EEFIQDWS--HGKVVVTGG--F 113 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC------------C------CSSH----HHHHHHHT--TSSBEEECC--C
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC------------C------cCCH----HHHHHHHH--CCCEEEEcC--C
Confidence 4566788899999999999999999999954 1 1234 77888888 889999998 2
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc-CCC------cc
Q 020388 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GAN------VL 184 (327)
Q Consensus 112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~-g~~------v~ 184 (327)
.. ++++|++|+.+|.+|+|+++++||||||||++||+++|+++++++++++|+.+++.. |.+ ++
T Consensus 114 -~~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~ 184 (226)
T 2j4j_A 114 -QP--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELL 184 (226)
T ss_dssp -ST--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCS
T ss_pred -CC--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccc
Confidence 11 356899999999999999999999999999999999999999999999999999644 544 77
Q ss_pred cHhhHHHHHhCCCCEEEeecCCC---------CCCceEEeC
Q 020388 185 HPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR 216 (327)
Q Consensus 185 ~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~ 216 (327)
|++|+.+|.++|+|++|.|+++| +..||+|.+
T Consensus 185 k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 185 DPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp CHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred hHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 89999999999999999998654 346898864
No 12
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.90 E-value=5.3e-23 Score=187.31 Aligned_cols=182 Identities=20% Similarity=0.186 Sum_probs=144.6
Q ss_pred ccHHHHHHHHHHHHhhhc---------C--C-----------CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388 11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (327)
Q Consensus 11 ~~~~~i~~~~~~l~~~~~---------~--~-----------~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~ 68 (327)
+..++++...+.+..+.+ + . .+....|++-....++++.++..+|.+.|++++.+++.
T Consensus 29 ~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~ 108 (243)
T 3ek6_A 29 IDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAI 108 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechh
Confidence 456778777777776543 1 1 12334454444556788888999999999999999998
Q ss_pred ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148 (327)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV 148 (327)
++..+++ ..+. +.+.++++ .|.|||++|+. |. .++++|++|+++|.+|+|+.+++||||
T Consensus 109 ~~~~v~~------~~~~----~~~~~lL~--~g~IpVv~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~li~lTdV 167 (243)
T 3ek6_A 109 KINDVCE------DFIR----RRAIRHLE--KGRIAIFAAGT-----GN----PFFTTDSGAALRAIEIGADLLLKATKV 167 (243)
T ss_dssp CBTTTBE------ECCH----HHHHHHHH--TTCEEEEESTT-----SS----TTCCHHHHHHHHHHHHTCSEEEEECSS
T ss_pred hcCcccC------cCCH----HHHHHHHH--CCcEEEEECCC-----CC----CcCChHHHHHHHHHHcCCCEEEEEeCC
Confidence 8654332 1233 67788888 89999999842 22 135689999999999999999999999
Q ss_pred CccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEeC
Q 020388 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR 216 (327)
Q Consensus 149 ~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~ 216 (327)
||||++||+++|+|+++++++++|+.+ .|.++|+++|+..|.++|+|++|.|+++| +..||+|.+
T Consensus 168 dGvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 168 DGVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SSCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred CccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999876 37889999999999999999999998754 346999875
No 13
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.90 E-value=2.1e-23 Score=200.41 Aligned_cols=170 Identities=16% Similarity=0.224 Sum_probs=105.7
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (327)
Q Consensus 34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~ 113 (327)
...+.++++||..++.++...|.++|+++. ++.++.+ .+.. ...+...++.++.+++ .+.|||+++.
T Consensus 70 ~~~qa~aavGq~~l~~~~~~~l~~~G~~~~-----qvllt~~-d~~~-~~r~~n~~~~i~~LL~--~g~IPIv~en---- 136 (367)
T 2j5v_A 70 ASKQLLAAVGQSRLIQLWEQLFSIYGIHVG-----QMLLTRA-DMED-RERFLNARDTLRALLD--NNVVPVINEN---- 136 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCEE-----EEEECGG-GGSS-HHHHHHHHHHHHHHHH--TTCEEEEEEC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCceE-----EEEEecc-cccC-ceEEEhHHHHHHHHHH--CCCEEEECCC----
Confidence 567777899999999999999999999985 3333332 2211 1223334467888888 8999999642
Q ss_pred CCCCeee--ecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH--HHHHHHHh-----cCCCcc
Q 020388 114 PDNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVL 184 (327)
Q Consensus 114 ~~g~~~~--lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~~-----~g~~v~ 184 (327)
|.+.+ +.+|++|++|+.+|.+|+|+.+++||||||||++||+.+|++++|+++++ +|+.+++. +|+++|
T Consensus 137 --d~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM 214 (367)
T 2j5v_A 137 --DAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGM 214 (367)
T ss_dssp --TTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC------------------------------------------C
T ss_pred --CceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCcc
Confidence 33333 66899999999999999999999999999999999999999999999999 89988875 478999
Q ss_pred cH--hhHHHHHhCCCCEEEeecCCCC---------CCceEEeCCC
Q 020388 185 HP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP 218 (327)
Q Consensus 185 ~p--~a~~~a~~~~I~v~I~n~~~~e---------~~GT~I~~~~ 218 (327)
+| +|+..|.++|+|++|.+++.|+ ..||+|.+..
T Consensus 215 ~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~~ 259 (367)
T 2j5v_A 215 STKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA 259 (367)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCS
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcCc
Confidence 99 5899999999999999998765 6799997653
No 14
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.89 E-value=7.8e-23 Score=187.11 Aligned_cols=184 Identities=20% Similarity=0.263 Sum_probs=144.8
Q ss_pred ccHHHHHHHHHHHHhhhc---------C--C-----------CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388 11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (327)
Q Consensus 11 ~~~~~i~~~~~~l~~~~~---------~--~-----------~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~ 68 (327)
+..+.++...+.+..+.. + . .+++..+.+.++++.++..++..+|.+.|+++.++++.
T Consensus 27 ~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~ 106 (252)
T 1z9d_A 27 IDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAI 106 (252)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecc
Confidence 345667777766666532 1 1 22333455667788889998999999999999999987
Q ss_pred ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEee-c
Q 020388 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-D 147 (327)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~t-D 147 (327)
+...+.+ . + ....+.++++ .+.|||++|+. |. .++++|++|+.+|.+|+|++++||| |
T Consensus 107 ~~~~~~~-~-------~--~~~~~~~lL~--~g~IpVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~D 165 (252)
T 1z9d_A 107 PMQNVAE-P-------Y--IRGRALRHLE--KNRIVVFGAGI-----GS----PYFSTDTTAALRAAEIEADAILMAKNG 165 (252)
T ss_dssp CBTTTBE-E-------C--CHHHHHHHHH--TTCEEEEESTT-----SC----TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ccccccC-c-------c--hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCChHHHHHHHHHhcCCCEEEEecCC
Confidence 7643322 1 1 1233467887 88999999832 22 2567999999999999999999999 9
Q ss_pred cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCC---------CCceEEeCCC
Q 020388 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP 218 (327)
Q Consensus 148 V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e---------~~GT~I~~~~ 218 (327)
|||||++||+++|++++|++++++|+.+ .|.++|+++|+..|.++|+|++|.|++.|+ ..||+|.++.
T Consensus 166 VdGvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 242 (252)
T 1z9d_A 166 VDGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV 242 (252)
T ss_dssp CCSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred CCeeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence 9999999999999999999999999876 478899999999999999999999997664 5799998654
No 15
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.89 E-value=1.5e-22 Score=189.66 Aligned_cols=170 Identities=14% Similarity=0.180 Sum_probs=138.4
Q ss_pred hhHHHHh--hhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC-----------C----CCCCchHHHHHHHHH
Q 020388 33 ESFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-----------Q----VDPDFSESEKRLEKW 95 (327)
Q Consensus 33 ~~~~d~v--~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~i~~~ 95 (327)
+...+.+ ++.|+. ...+++.|++.|++++++++.+..++++..++ . ..++. +.++++
T Consensus 92 ~~~l~~~~~~~~G~l--~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~----~~i~~l 165 (299)
T 2ap9_A 92 PEVLDVARMVLFGQV--GRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNT----AAMLDL 165 (299)
T ss_dssp HHHHHHHHHHHHHTH--HHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECH----HHHHHH
T ss_pred HHHHHHHHHHHhhHH--HHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecH----HHHHHH
Confidence 4455543 446884 34479999999999999999886444322211 0 01234 778889
Q ss_pred hhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388 96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE 175 (327)
Q Consensus 96 l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~ 175 (327)
++ .+.|||++|+ +.++.|..+++ ++|++|+.+|.+|+|++++|||||||||++||+ ++++|++++++|+.+
T Consensus 166 L~--~g~IpVv~~v-~~~~~G~~~~l---~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~ 236 (299)
T 2ap9_A 166 VA--AGRIPVVSTL-APDADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQ 236 (299)
T ss_dssp HH--TTCEEEEESE-EECTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHH
T ss_pred Hh--CCCeEEECCe-eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHH
Confidence 98 8999999997 88999988887 589999999999999999999999999999998 479999999999999
Q ss_pred HHhcCCCcccHh--hHHHHHhCCCC-EEEeecCCCC----------CCceEEeCC
Q 020388 176 MSYFGANVLHPR--TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP 217 (327)
Q Consensus 176 l~~~g~~v~~p~--a~~~a~~~~I~-v~I~n~~~~e----------~~GT~I~~~ 217 (327)
++.+++++|+|| |+..|.++|+| ++|.|+..|+ ..||.|.+.
T Consensus 237 l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 237 LLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp HGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred HHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 999999999997 88899999999 9999986543 458999764
No 16
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.88 E-value=1.5e-22 Score=187.07 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=120.7
Q ss_pred HHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCC--CCeeeecCCcc
Q 020388 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD--NIPTTLKRDGS 126 (327)
Q Consensus 49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~--g~~~~lgrggs 126 (327)
..+++.|+++|++++++++.+..+++.++. ..++. +.++.+++ .+.|||++||++.+.+ |+++++ ++
T Consensus 92 ~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v--~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~~~g~~~~~---~~ 160 (269)
T 3ll9_A 92 SHVCDALLAEGIPAVSMQPSAFIRAHAGRI--SHADI----SLIRSYLE--EGMVPVVYGDVVLDSDRRLKFSVI---SG 160 (269)
T ss_dssp HHHHHHHHHTTCCEEECCGGGTEEEETTEE--EEECC----HHHHHHHH--TTCEEEEECEEEEBSCTTTSEEEE---CH
T ss_pred HHHHHHHHHCCCcEEEEcchHcCeEecCee--eeecH----HHHHHHHH--CCCEEEECCCEEecccccCcceec---ch
Confidence 357999999999999999999877653221 23455 78888998 8999999999998888 888776 48
Q ss_pred hHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh-----cCCCcccHh--hHHHHHhCCCCE
Q 020388 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVLHPR--TIIPVMRYDIPI 199 (327)
Q Consensus 127 D~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~-----~g~~v~~p~--a~~~a~~~~I~v 199 (327)
|++|+.+|.+|+|+++++||||||||++||+.+|++++++++++.|+.++.. .+.++|.|| |+..|.++|+++
T Consensus 161 D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v 240 (269)
T 3ll9_A 161 DQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVES 240 (269)
T ss_dssp HHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeE
Confidence 9999999999999999999999999999999999999999999999977653 456789996 667777899999
Q ss_pred EEeecCCC---------CCC-ceEEe
Q 020388 200 VIRNIFNL---------SVP-GIMIC 215 (327)
Q Consensus 200 ~I~n~~~~---------e~~-GT~I~ 215 (327)
+|.++..| +.. ||+|.
T Consensus 241 ~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 241 EIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp EEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred EEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 99998654 345 88875
No 17
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.88 E-value=8.8e-22 Score=182.48 Aligned_cols=181 Identities=19% Similarity=0.247 Sum_probs=138.6
Q ss_pred ccHHHHHHHHHHHHhhhc---------C-------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388 11 LSYEFIRSTYNFLSNVDS---------G-------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (327)
Q Consensus 11 ~~~~~i~~~~~~l~~~~~---------~-------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~ 68 (327)
+..++++...+.+.++.+ + ..+....|++-.+++++++.++...|+++|++++.+.+.
T Consensus 69 ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~ 148 (281)
T 3nwy_A 69 LDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAI 148 (281)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 556777777777776654 1 122344566667889999999999999999999888877
Q ss_pred ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148 (327)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV 148 (327)
+...+.+ .+ .+ .+.+ ++++ .+.|||++|+. |. .++++|++|+++|.+|+||.+++||||
T Consensus 149 ~~~~~~~-~~----~~----~~~l-~lL~--~g~IpVv~g~~-----g~----~~~~~D~~Aa~lA~~l~Ad~LiilTDV 207 (281)
T 3nwy_A 149 TMGQVAE-PY----LP----LRAV-RHLE--KGRVVIFGAGM-----GL----PYFSTDTTAAQRALEIGADVVLMAKAV 207 (281)
T ss_dssp CCGGGSE-EC----CH----HHHH-HHHH--TTCEEEEESTT-----SS----TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ccccccc-cc----ch----HHHH-HHHH--cCCeEEEECCC-----CC----CCCCHHHHHHHHHHHcCCCEEEEeecc
Confidence 7654442 11 11 1334 6777 89999999842 22 136789999999999999999999999
Q ss_pred CccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (327)
Q Consensus 149 ~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~ 215 (327)
||||++||+++|+|++++++++.|+.+ .|.++|+++|+..|.++|+|++|.|+++| +..||+|.
T Consensus 208 dGVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 208 DGVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp SSCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred CccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999999755 47889999999999999999999998754 34688874
No 18
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.87 E-value=3.9e-22 Score=184.83 Aligned_cols=159 Identities=17% Similarity=0.168 Sum_probs=127.4
Q ss_pred hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (327)
Q Consensus 33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~ 112 (327)
+...+.+...++.++..+++..+...|++++.+ ....+.++.+++ .+.|||++||++.
T Consensus 98 ~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~--------------------~~~~~~i~~lL~--~g~IpVi~~~~~~ 155 (276)
T 2ogx_A 98 VGSLAPLAASEAGQNGHILAAMLASEGVSYVEH--------------------PTVADQLAIHLS--ATRAVVGSAFPPY 155 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCH--------------------HHHHHHHHHHHH--HSSEEEEESSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--------------------cChHHHHHHHHh--CCCEEEEcCCccc
Confidence 445556666667777777777776777754211 112367888888 7899999999776
Q ss_pred CC--C-CCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCC--CCCCCeEEeecCHHHHHHHHhcCCCcccHh
Q 020388 113 TP--D-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR--KVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (327)
Q Consensus 113 ~~--~-g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~--~~~~a~~i~~is~~ea~~l~~~g~~v~~p~ 187 (327)
+. . |.. +.++++|++|+.+|.+|+|+++++||||||||++||+ .+|++++|+++++.|+.+++ |+++|+|+
T Consensus 156 ~~~e~~G~~--~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K 231 (276)
T 2ogx_A 156 HHHEFPGSR--IPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--GPLPVDRA 231 (276)
T ss_dssp GGGCCSSSS--SCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--SCCSSCHH
T ss_pred ccccccCCc--CCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--CcCChHHH
Confidence 62 2 222 2346799999999999999999999999999999999 89999999999999999987 89999999
Q ss_pred hHHHHH--hCCCCEEEeecCCC---------CCCceEEeCC
Q 020388 188 TIIPVM--RYDIPIVIRNIFNL---------SVPGIMICRP 217 (327)
Q Consensus 188 a~~~a~--~~~I~v~I~n~~~~---------e~~GT~I~~~ 217 (327)
+...+. +++++++|.|++.| +..||+|.+.
T Consensus 232 ~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 232 LLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp HHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred HHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 998888 66889999998866 4679999764
No 19
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.87 E-value=1.5e-21 Score=180.32 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=131.5
Q ss_pred hhHHHHhhhh--cHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCC----------------CC----CCCCchHHHH
Q 020388 33 ESFTDFVVGH--GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS----------------NQ----VDPDFSESEK 90 (327)
Q Consensus 33 ~~~~d~v~s~--GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~----------------~~----~~~~~~~~~~ 90 (327)
+...+.+.+. |+. ...+.+.|+++|+++..+++.+..+++.... +. ..++. +
T Consensus 68 ~~~l~~~~~~~~G~i--~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~----~ 141 (269)
T 2egx_A 68 RKTLEIFEMVYCGLV--NKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNK----A 141 (269)
T ss_dssp HHHHHHHHHHHHTHH--HHHHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECH----H
T ss_pred HHHHHHHHHHHHhHH--HHHHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECH----H
Confidence 4555666665 666 7888999999999999999988543332221 11 12333 7
Q ss_pred HHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH
Q 020388 91 RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY 170 (327)
Q Consensus 91 ~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~ 170 (327)
.++.+++ .+.|||+++ ++.+++|++++ +++|++|+.+|.+|+|+++++||||||||+ || .|++++++++++
T Consensus 142 ~i~~ll~--~g~ipVi~~-v~~~~~g~~~~---~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp--~~~a~~i~~i~~ 212 (269)
T 2egx_A 142 LLDLLLQ--AGYLPVLTP-PALSYENEAIN---TDGDQIAALLATLYGAEALVYLSNVPGLLA-RY--PDEASLVREIPV 212 (269)
T ss_dssp HHHHHHH--TTCEEEEEC-CEEETTSCEEE---ECHHHHHHHHHHHHTCSEEEEEESSSSCBC---------CBCCEECH
T ss_pred HHHHHHH--CCCEEEEcC-cEECCCCCEEE---eCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC--CCCccccccCCH
Confidence 7888888 899999996 57788888763 569999999999999999999999999999 99 378999999999
Q ss_pred HHHH--HHHhcCCCcccHh--hHHHHHhCCC-CEEEeecCCCC-------CCceEE
Q 020388 171 QEAW--EMSYFGANVLHPR--TIIPVMRYDI-PIVIRNIFNLS-------VPGIMI 214 (327)
Q Consensus 171 ~ea~--~l~~~g~~v~~p~--a~~~a~~~~I-~v~I~n~~~~e-------~~GT~I 214 (327)
+|+. +++.++.++|+|| |+..|.++|+ +++|.|+..|+ ..||.|
T Consensus 213 ~e~~~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g~GT~i 268 (269)
T 2egx_A 213 ERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSGEGTVV 268 (269)
T ss_dssp HHHHCHHHHTTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTTCSEEE
T ss_pred HHhhHHHhcCCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCCCCeEE
Confidence 9999 9987889999994 8899999999 99999988764 358877
No 20
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.87 E-value=1.6e-21 Score=177.69 Aligned_cols=149 Identities=25% Similarity=0.290 Sum_probs=123.3
Q ss_pred ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (327)
Q Consensus 32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~ 111 (327)
++...+.+.+.|+.+++.++...|.++|++. + .++. +.+.++++ .+.|||++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~------------~~~~----~~i~~lL~--~g~IpVi~g--- 132 (244)
T 2brx_A 80 SETFKDFIGIQITRANAMLLIAALREKAYPV------V------------VEDF----WEAWKAVQ--LKKIPVMGG--- 132 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C------------BCSH----HHHHHHHH--TTCBCEECC---
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C------------cCCH----HHHHHHHh--CCCEEEEcC---
Confidence 4566677788899999999999999999754 0 1233 66778888 899999998
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc-CC-----Cccc
Q 020388 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH 185 (327)
Q Consensus 112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~-g~-----~v~~ 185 (327)
|.. ++++|++|+.+|.+|+|+++++||||||||++||+++|++++++++++.|+.+++.. |. .+++
T Consensus 133 ----g~~----~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~ 204 (244)
T 2brx_A 133 ----THP----GHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVID 204 (244)
T ss_dssp ----CST----TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSC
T ss_pred ----CCC----CCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchH
Confidence 221 246899999999999999999999999999999999999999999999999998543 43 7889
Q ss_pred HhhHHHHHhCCCCEEEeecCC---------CCCCceEEe
Q 020388 186 PRTIIPVMRYDIPIVIRNIFN---------LSVPGIMIC 215 (327)
Q Consensus 186 p~a~~~a~~~~I~v~I~n~~~---------~e~~GT~I~ 215 (327)
+.|++.+.+.+++++|.|++. .+..||+|.
T Consensus 205 ~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~ 243 (244)
T 2brx_A 205 PLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 243 (244)
T ss_dssp HHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEEC
T ss_pred HHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEec
Confidence 999999999999999998753 334689885
No 21
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.87 E-value=2.8e-22 Score=183.10 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=122.2
Q ss_pred hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (327)
Q Consensus 34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~ 113 (327)
...+.+.+.||....+++..+|.++|+++..+ .. +...+.. ...+....+.++.+++ .+.|||++|+-+..
T Consensus 63 ~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i-----~~-~~~~~~~-~~~~~~~~~~i~~ll~--~g~ipVi~~~d~v~ 133 (251)
T 2ako_A 63 INKQVLAAIGQPFLISVYNELLAKFNKLGGQI-----LL-TGKDFDS-RKATKHAKNAIDMMIN--LGILPIINENDATA 133 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE-----EE-CTGGGGC-HHHHHHHHHHHHHHHH--TTCEEEEEECTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE-----Ee-ccchhcC-cceEehHHHHHHHHHH--CCCEEEEeCCCcee
Confidence 44567889999999999999999999998643 22 2211211 0111223367788888 88999998652221
Q ss_pred CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH--HHHHHHh-----cCCCcccH
Q 020388 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMSY-----FGANVLHP 186 (327)
Q Consensus 114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~--ea~~l~~-----~g~~v~~p 186 (327)
. ++. .++++|++|+.+|.+|+|+++++||||||||++||+++|++++++++++. |+.+++. +|+++|.|
T Consensus 134 ~-~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~ 209 (251)
T 2ako_A 134 I-EEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVT 209 (251)
T ss_dssp C-HHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHH
T ss_pred e-cce---eecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHH
Confidence 1 111 36789999999999999999999999999999999999999999999998 9988865 67787887
Q ss_pred h--hHHHHHhCCCCEEEeecCCC
Q 020388 187 R--TIIPVMRYDIPIVIRNIFNL 207 (327)
Q Consensus 187 ~--a~~~a~~~~I~v~I~n~~~~ 207 (327)
+ |+..|.++|+|++|.|++.|
T Consensus 210 k~~aa~~a~~~gv~v~I~~g~~~ 232 (251)
T 2ako_A 210 KLKAAKFLLEHNKKMFLASGFDL 232 (251)
T ss_dssp HHHHHHHHHHTTCEEEEEESSSC
T ss_pred HHHHHHHHHHCCCeEEEEeCCCh
Confidence 4 89999999999999987654
No 22
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.86 E-value=3.2e-21 Score=176.78 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=116.5
Q ss_pred HHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCC
Q 020388 37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN 116 (327)
Q Consensus 37 d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g 116 (327)
+..-..+..+++.++...|.++|+++..+.+.+...+. +. + ....+..+++ .+.|||++|+ .|
T Consensus 91 ~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~~~~~-----~~---~--~~~~~~~lL~--~g~IpVi~~~-----~g 153 (256)
T 2va1_A 91 DNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLV-----HE---S--SANNIKKAIE--KEQVMIFVAG-----TG 153 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCCTTTC-----EE---C--CHHHHHHHHH--TTCEEEEEST-----TS
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeccccc-----ch---h--hHHHHHHHHh--CCcEEEEECC-----CC
Confidence 33444556778888899999999999988866542211 11 1 2233367887 8999999982 23
Q ss_pred CeeeecCCcchHHHHHHHHHhCCceEEEeec-cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhC
Q 020388 117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY 195 (327)
Q Consensus 117 ~~~~lgrggsD~~A~~lA~~l~A~~l~~~tD-V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~ 195 (327)
. .++++|++|+.+|.+|+|+++++||| |||||++||+++|+++++++++++|+.++ +.++|+++|+..|.++
T Consensus 154 ~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~ 226 (256)
T 2va1_A 154 F----PYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQEN 226 (256)
T ss_dssp S----SSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHT
T ss_pred C----CCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHC
Confidence 2 24678999999999999999999999 99999999999999999999999999887 4678899999999999
Q ss_pred CCCEEEeecCCCC---------CCceEEe
Q 020388 196 DIPIVIRNIFNLS---------VPGIMIC 215 (327)
Q Consensus 196 ~I~v~I~n~~~~e---------~~GT~I~ 215 (327)
|+|++|.|+++|+ ..||+|.
T Consensus 227 gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 227 NINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp TCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred CCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 9999999987543 4588874
No 23
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.85 E-value=8e-22 Score=183.64 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=124.0
Q ss_pred HhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCC
Q 020388 38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI 117 (327)
Q Consensus 38 ~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~ 117 (327)
..++.|+-.....+...|.++|+++..+.+.+..++.++ ...++. +.++.+++ .+.|||++||++.+++|.
T Consensus 93 ~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~dg---~~~~~~----~~i~~lL~--~g~IpVi~gd~~~~~~g~ 163 (286)
T 3d40_A 93 AGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNG---IPQLRS----EVLRDVLD--HGALPVLAGDALFDEHGK 163 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETT---EEEECC----SHHHHHHH--TTCEEEEECEEEEBTTSC
T ss_pred hcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccCC---eEEehH----HHHHHHHH--CcCEEEEcCCeEEcCCCC
Confidence 456777777788999999999999999988766543221 122333 67888888 899999999888888887
Q ss_pred eeeecCCcchHHHHHHHHH-hCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh--------cCCCcccH--
Q 020388 118 PTTLKRDGSDFSAAIMGAL-LRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHP-- 186 (327)
Q Consensus 118 ~~~lgrggsD~~A~~lA~~-l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~--------~g~~v~~p-- 186 (327)
+ .++++|++|+.+|.+ |+|++|+|||||||||++||+ ++++|+++++.|+.++.. ++.++|+|
T Consensus 164 ~---~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl 237 (286)
T 3d40_A 164 L---WAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKL 237 (286)
T ss_dssp E---EEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHH
T ss_pred E---EeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHH
Confidence 5 346799999999999 999999999999999999998 799999999988766632 46789999
Q ss_pred hhHHHHHhCCCCEEEeecCCCC
Q 020388 187 RTIIPVMRYDIPIVIRNIFNLS 208 (327)
Q Consensus 187 ~a~~~a~~~~I~v~I~n~~~~e 208 (327)
+|+..|.++|+|++|.|+..|+
T Consensus 238 ~Aa~~a~~~gv~v~I~~g~~p~ 259 (286)
T 3d40_A 238 DALVTCARRGAECFIMRGDPGS 259 (286)
T ss_dssp HHHHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHHHCCCcEEEEeCCCCC
Confidence 5899999999999999987654
No 24
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.84 E-value=2e-20 Score=167.33 Aligned_cols=147 Identities=25% Similarity=0.301 Sum_probs=118.6
Q ss_pred ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (327)
Q Consensus 32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~ 111 (327)
++...+.+.+.++.+++.++...|+.. +. . ..++. +.++++++ .+.|||++|
T Consensus 58 ~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~-------------~-----~~~~~----~~i~~ll~--~g~ipVi~~--- 109 (219)
T 2ij9_A 58 SETFCDYIGIAATRLNAMLLISAIPSA-AK-------------K-----VPVDF----MEAEELSK--LYRVVVMGG--- 109 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCTTB-CS-------------S-----CCSSH----HHHHHHHT--TCSEEEECC---
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHh-cC-------------C-----CcCCH----HHHHHHHH--CCCEEEEeC---
Confidence 456667778888899999988766543 10 0 11344 67888888 899999998
Q ss_pred cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc-CC-----Cccc
Q 020388 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH 185 (327)
Q Consensus 112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~-g~-----~v~~ 185 (327)
|.. ++++|++|+.+|.+|+|+++++||||||||++||+++|++++++++++.|+.+++.. |. .+++
T Consensus 110 ----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~ 181 (219)
T 2ij9_A 110 ----TFP----GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVID 181 (219)
T ss_dssp ----CSS----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSC
T ss_pred ----CCC----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchH
Confidence 222 356899999999999999999999999999999999999999999999999999765 44 7889
Q ss_pred HhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388 186 PRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (327)
Q Consensus 186 p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~ 215 (327)
+.|++.+.+.++|++|.|+ +| +..||.|.
T Consensus 182 ~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 182 LLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp HHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred HHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 9999999999999999986 43 34688873
No 25
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.84 E-value=2e-20 Score=175.10 Aligned_cols=160 Identities=15% Similarity=0.171 Sum_probs=129.0
Q ss_pred hhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCC------CCC----CCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (327)
Q Consensus 41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~------~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi 110 (327)
+.|+. ...++..|.+.|++++++++.+..+..... +++ ..++. +.++++++ .+.|||++|+
T Consensus 113 ~~G~~--n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g~IpVi~~v- 183 (298)
T 2rd5_A 113 LVGKV--NKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDP----SVLRPLVD--YGYIPVIASV- 183 (298)
T ss_dssp HHHTH--HHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECG----GGHHHHHH--TTCEEEEESE-
T ss_pred HhchH--HHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECH----HHHHHHHh--CCCEEEEcCe-
Confidence 35887 457899999999999999987543322111 221 12344 67888888 8999999997
Q ss_pred ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccHh-
Q 020388 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR- 187 (327)
Q Consensus 111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p~- 187 (327)
+.++.|+.+++ ++|++|+.+|.+|+|+++++||||||||++||+ | +++|++++++|+.+++..| .++|+||
T Consensus 184 ~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl 257 (298)
T 2rd5_A 184 AADDSGQAYNI---NADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKV 257 (298)
T ss_dssp EECTTSCEEEE---CHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHH
T ss_pred eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHH
Confidence 88888988877 489999999999999999999999999999998 4 8999999999999998754 5789995
Q ss_pred -hHHHHHhCCCC-EEEeecCCCC----------CCceEEe
Q 020388 188 -TIIPVMRYDIP-IVIRNIFNLS----------VPGIMIC 215 (327)
Q Consensus 188 -a~~~a~~~~I~-v~I~n~~~~e----------~~GT~I~ 215 (327)
|+..|.++|++ ++|.|+..|+ ..||.|.
T Consensus 258 ~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~ 297 (298)
T 2rd5_A 258 KCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMIT 297 (298)
T ss_dssp HHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEE
T ss_pred HHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEe
Confidence 88888999998 9999886543 3588875
No 26
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.83 E-value=3.9e-20 Score=174.89 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=132.7
Q ss_pred hhHHHHh--hhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC-----CCCC----CCCCchHHHHHHHHHhhcCCC
Q 020388 33 ESFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----SSNQ----VDPDFSESEKRLEKWFSQSPS 101 (327)
Q Consensus 33 ~~~~d~v--~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~-----~~~~----~~~~~~~~~~~i~~~l~~~~~ 101 (327)
+...+.+ ++.|+. ...++..|++.|++++++++.+..+.... .+++ ..++. +.|+++++ .|
T Consensus 116 ~~~l~~~~~~~~G~i--n~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g 187 (321)
T 2v5h_A 116 ADTMEVVEMVLVGRV--NKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNS----EVIEPLLE--RG 187 (321)
T ss_dssp HHHHHHHHHHHHHTH--HHHHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECG----GGTHHHHH--TT
T ss_pred HHHHHHHHHHHhChH--HHHHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecH----HHHHHHHH--CC
Confidence 4445544 346876 55688999999999999987753222211 2332 12344 67788888 89
Q ss_pred ceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC-
Q 020388 102 NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG- 180 (327)
Q Consensus 102 ~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g- 180 (327)
.|||+++ ++.++.|...++ ++|++|+.+|.+|+|++++|+|||||||++||+ ++++|++++++|+.+++..|
T Consensus 188 ~IpVi~~-v~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~ 260 (321)
T 2v5h_A 188 YIPVISS-VAADENGQSFNI---NADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGI 260 (321)
T ss_dssp CEEEEES-EEECTTSCEEEC---CHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTS
T ss_pred CeEEEeC-ceECCCCCEEEe---CHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCC
Confidence 9999996 488888876533 589999999999999999999999999999998 58999999999999998754
Q ss_pred -CCcccH--hhHHHHHhCCCC-EEEeecCCC----------CCCceEEeCC
Q 020388 181 -ANVLHP--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP 217 (327)
Q Consensus 181 -~~v~~p--~a~~~a~~~~I~-v~I~n~~~~----------e~~GT~I~~~ 217 (327)
+++|+| +|+..|.++|++ ++|.|+..| +..||+|.+.
T Consensus 261 ~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 261 VGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp SCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred CcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 688999 488999999999 999987544 3469999764
No 27
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.83 E-value=2.7e-20 Score=170.71 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=124.4
Q ss_pred hhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC-------CCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-------SSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (327)
Q Consensus 41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~-------~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~ 112 (327)
+.++.+++.++. .|+++|+++..+++.+..++++. ..|+ ..++. +.++.+++ .+.|||++|+ +.
T Consensus 79 ~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~----~~i~~ll~--~g~ipVi~~~-g~ 150 (258)
T 1gs5_A 79 ALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GV 150 (258)
T ss_dssp HHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EE
T ss_pred HHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECH----HHHHHHHH--CCCEEEEeCC-cC
Confidence 345567777764 67999999999999886444331 1122 23556 77888888 8999999998 88
Q ss_pred CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCC--Cccc---Hh
Q 020388 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA--NVLH---PR 187 (327)
Q Consensus 113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~--~v~~---p~ 187 (327)
+..|+++++ ++|++|+.+|.+|+|+ +++||||||||++| ++++++++++|+.+++..|. .+|. +.
T Consensus 151 ~~~g~~~~~---~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~ 220 (258)
T 1gs5_A 151 TDEGQLMNV---NADQAATALAATLGAD-LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNA 220 (258)
T ss_dssp CTTSCEEEC---CHHHHHHHHHHHHTCE-EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHH
T ss_pred CCCCcEEEe---cHHHHHHHHHHHhCCc-EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHH
Confidence 889998876 5899999999999999 99999999999975 57899999999999986543 4454 45
Q ss_pred hHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388 188 TIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (327)
Q Consensus 188 a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~ 215 (327)
|++.+.+.++|++|.|++.| +..||.|.
T Consensus 221 a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 221 ALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred HHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 88888888999999997654 34688874
No 28
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.82 E-value=7.6e-20 Score=168.89 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=115.0
Q ss_pred hhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCe
Q 020388 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP 118 (327)
Q Consensus 39 v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~ 118 (327)
..+.|. +..++...|.++|++. ++ ..|+ +.++++++ .+.|||++|+.+.+.....
T Consensus 104 ~~a~G~--~~l~~~~~l~~~G~~~----------vt-------~~d~----~~i~~lL~--~g~ipVi~g~~g~~~~~~~ 158 (270)
T 2ogx_B 104 SSVADQ--NAAMLGQLLAKHGIPV----------VG-------GAGL----SAVPLSLA--EVNAVVFSGMPPYKLWMRP 158 (270)
T ss_dssp HHHHHH--HHHHHHHHHGGGTCCB----------CC-------SSTT----CHHHHHCT--TCCEEEEECSCTTGGGCCC
T ss_pred HHHHHH--HHHHHHHHHHhcCCce----------ec-------HhhH----HHHHHHHh--CCCEEEEeCCccccccccc
Confidence 444553 3556667777788761 12 1334 45788887 8999999999775521111
Q ss_pred eeec---CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHh-
Q 020388 119 TTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR- 194 (327)
Q Consensus 119 ~~lg---rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~- 194 (327)
+..| ++++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.+++..| .++++.+...+..
T Consensus 159 ~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa 237 (270)
T 2ogx_B 159 AAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSA 237 (270)
T ss_dssp CSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHC
T ss_pred cccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHh
Confidence 1222 3789999999999999999999999999999999999999999999999999998644 5677766665554
Q ss_pred -CCCCEEEeecCCCC---------CCceEEeC
Q 020388 195 -YDIPIVIRNIFNLS---------VPGIMICR 216 (327)
Q Consensus 195 -~~I~v~I~n~~~~e---------~~GT~I~~ 216 (327)
.+++++|.|++.|+ ..||+|.+
T Consensus 238 ~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 238 QHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp SSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred hcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 57799999987654 56999864
No 29
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.82 E-value=1.3e-19 Score=168.22 Aligned_cols=158 Identities=18% Similarity=0.137 Sum_probs=126.6
Q ss_pred hhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC------CCCC----CCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (327)
Q Consensus 41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~------~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi 110 (327)
+.|+. ...+...|++.|++++++++.+..+.... .+++ ..++. +.++++++ .+.|||++|+
T Consensus 98 ~~G~~--~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~----~~i~~ll~--~g~IpVi~~v- 168 (282)
T 2bty_A 98 LVGKI--NKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNP----EILHALIE--NDYIPVIAPV- 168 (282)
T ss_dssp HHHTH--HHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECT----HHHHHHHH--TTCEEEEESE-
T ss_pred HhhHH--HHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecH----HHHHHHHH--CCCEEEECCC-
Confidence 36887 55689999999999999987754322211 1232 12444 78888998 8999999997
Q ss_pred ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccH--
Q 020388 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP-- 186 (327)
Q Consensus 111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p-- 186 (327)
+.++.|..+++ ++|++|+.+|.+|+|+++++||||||||++ | +++++++++|+.+++..| .++|.|
T Consensus 169 ~~~~~G~~~~~---~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~ 238 (282)
T 2bty_A 169 GIGEDGHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKV 238 (282)
T ss_dssp EECSSSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHH
T ss_pred ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHH
Confidence 88888988776 589999999999999999999999999997 3 899999999999998755 467887
Q ss_pred hhHHHHHhCCCC-EEEeecCCCC----------CCceEEeCC
Q 020388 187 RTIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP 217 (327)
Q Consensus 187 ~a~~~a~~~~I~-v~I~n~~~~e----------~~GT~I~~~ 217 (327)
+|+..|.++|+| ++|.|+..|. ..||.|.++
T Consensus 239 ~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 239 ECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp HHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred HHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 488999999998 9999876443 469999653
No 30
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.80 E-value=3e-19 Score=163.09 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCC
Q 020388 45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD 124 (327)
Q Consensus 45 ~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrg 124 (327)
.++..+ ...|+++|+++.++++.++... ++. +. +.++.+++ .+.|||++|+++.+.+|..++ +
T Consensus 83 ~ln~~~-v~~l~~~G~~a~~l~~~~~~~~-----g~v--~~----~~i~~ll~--~g~ipVi~~~~~~~~~~~~~~---~ 145 (249)
T 3ll5_A 83 NLDLMV-IDAMIEMGMRPISVPISALRYD-----GRF--DY----TPLIRYID--AGFVPVSYGDVYIKDEHSYGI---Y 145 (249)
T ss_dssp HHHHHH-HHHHHHTTCCEEECCGGGSCBS-----SSB--CC----HHHHHHHH--TTCEEEEECEEEEEETTEEEE---E
T ss_pred HHHHHH-HHHHHHCCCcEEEEcHHHcccc-----cEE--cH----HHHHHHHH--CCCEEEECCCEEEcCCCceee---e
Confidence 344444 4889999999999999887542 222 55 78888998 899999999888776666544 3
Q ss_pred cchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHH--hcCCCcccHh--hHHHH-HhCCCCE
Q 020388 125 GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS--YFGANVLHPR--TIIPV-MRYDIPI 199 (327)
Q Consensus 125 gsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~--~~g~~v~~p~--a~~~a-~~~~I~v 199 (327)
++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++ +++.... ..+.++|.|| ++..+ .++|+++
T Consensus 146 ~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v 224 (249)
T 3ll5_A 146 SGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGV 224 (249)
T ss_dssp CHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCE
T ss_pred cHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEE
Confidence 589999999999999999999999999999999999999999994 2222222 2456889996 55555 8899999
Q ss_pred EEeecCCC--------CCC-ceEE
Q 020388 200 VIRNIFNL--------SVP-GIMI 214 (327)
Q Consensus 200 ~I~n~~~~--------e~~-GT~I 214 (327)
+|.++..| +.. ||.|
T Consensus 225 ~I~~g~~~~~l~~l~g~~~~GT~i 248 (249)
T 3ll5_A 225 YLINGNHPERIGDIGKESFIGTVI 248 (249)
T ss_dssp EEEETTSGGGGGGTTSTTCCSEEE
T ss_pred EEEeCCChhHHHHhCCCCCCCEEe
Confidence 99997543 334 7776
No 31
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.80 E-value=2.6e-19 Score=165.80 Aligned_cols=148 Identities=14% Similarity=0.256 Sum_probs=124.9
Q ss_pred HHHHHHHHHcCCceeEEcccceeeccCCCC-----CC----CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCee
Q 020388 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSS-----NQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT 119 (327)
Q Consensus 49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~-----~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~ 119 (327)
..+.+.|++.|+++..+++.+..+++...+ ++ ..++. +.|+.+++ .+.|||++| ++.+++|..+
T Consensus 117 ~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~----~~i~~lL~--~g~IPVi~~-v~~~~~G~~~ 189 (279)
T 3l86_A 117 KNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINK----RVIEEFLE--NRQIPILAS-LGYSKEGDML 189 (279)
T ss_dssp HHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECH----HHHHHHHH--TTCEEEEES-EEECTTSCEE
T ss_pred HHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhH----HHHHHHHh--CCcEEEECC-cEECCCCCEe
Confidence 778999999999999999988655554322 21 12444 88899998 899999999 7889889887
Q ss_pred eecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccH--hhHHHHHhC
Q 020388 120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--RTIIPVMRY 195 (327)
Q Consensus 120 ~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p--~a~~~a~~~ 195 (327)
++ ++|++|+.+|.+|+|++++|+|||||||+ ++++|++++++|+.+++..| .++|.| +|+..|.++
T Consensus 190 ~i---~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~ 259 (279)
T 3l86_A 190 NI---NADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAA 259 (279)
T ss_dssp EC---CHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHT
T ss_pred ec---CHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHc
Confidence 76 58999999999999999999999999994 47899999999999998644 678999 588999999
Q ss_pred CCC-EEEeecCCCCCCceEEeC
Q 020388 196 DIP-IVIRNIFNLSVPGIMICR 216 (327)
Q Consensus 196 ~I~-v~I~n~~~~e~~GT~I~~ 216 (327)
|++ ++|.+++.. ||+|..
T Consensus 260 Gv~~v~I~~~~~~---GT~i~~ 278 (279)
T 3l86_A 260 GVGQVLIGDNLLT---GTLITA 278 (279)
T ss_dssp TCSEEEEESSSSC---SEEEEC
T ss_pred CCCEEEEeccCCC---CeEEec
Confidence 998 999999874 999964
No 32
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.79 E-value=1.9e-18 Score=161.81 Aligned_cols=167 Identities=15% Similarity=0.198 Sum_probs=131.1
Q ss_pred hhHHHHh--hhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC-----------------CCCCC----CCCchHHH
Q 020388 33 ESFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----------------SSNQV----DPDFSESE 89 (327)
Q Consensus 33 ~~~~d~v--~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~-----------------~~~~~----~~~~~~~~ 89 (327)
+...+.+ ++.|+. ...++..|++.|++++.+++.+..+.+.. .+++. .++.
T Consensus 93 ~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~---- 166 (300)
T 2buf_A 93 AATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNV---- 166 (300)
T ss_dssp HHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECH----
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECH----
Confidence 4445544 446887 78899999999999999987643222111 12221 2333
Q ss_pred HHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecC
Q 020388 90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS 169 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is 169 (327)
+.++.+++ .+.|||+++ ++.++.|...++ ++|++|+.+|.+|+|+++++||||||||++ +++++++++
T Consensus 167 ~~i~~lL~--~g~IpVi~~-v~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~ 234 (300)
T 2buf_A 167 GLLNMLVK--GDFIPVIAP-IGVGSNGESYNI---NADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLS 234 (300)
T ss_dssp HHHHHHHH--TTCEEEEEE-EEECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEEC
T ss_pred HHHHHHHH--CCCEEEEcC-ceeCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCC
Confidence 77888898 899999996 488888887765 489999999999999999999999999987 378999999
Q ss_pred HHHHHHHHhcC--CCcccH--hhHHHHHhCCCC-EEEeecCCC----------CCCceEEeCC
Q 020388 170 YQEAWEMSYFG--ANVLHP--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP 217 (327)
Q Consensus 170 ~~ea~~l~~~g--~~v~~p--~a~~~a~~~~I~-v~I~n~~~~----------e~~GT~I~~~ 217 (327)
+.|+.+++..| +++|+| +|+..|.++|++ ++|.|+..| +..||+|.+.
T Consensus 235 ~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 235 TEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 99999998754 688999 588889999999 999987544 3469999754
No 33
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.77 E-value=5.7e-18 Score=159.55 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=98.2
Q ss_pred HHHHHHhhcCCCceEEecCceec----CCCCCeeeec---CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCC
Q 020388 90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA 162 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~----~~~g~~~~lg---rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a 162 (327)
+.++.+++ .+.|||++|+.|. +.++ ++| ++++|++|+.+|.+|+|++++++|||||||++|| .|++
T Consensus 177 ~~i~~lL~--~g~IpV~~Gg~giPi~~~~d~---~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a 249 (314)
T 1e19_A 177 ETIKKLVE--RGVIVIASGGGGVPVILEDGE---IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKE 249 (314)
T ss_dssp HHHHHHHH--TTCEEECSGGGCEEEEEETTE---EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTC
T ss_pred HHHHHHHH--CCCEEEEeCCCccCeEECCCC---cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCC
Confidence 77889998 8999999986332 3332 455 3889999999999999999999999999999999 4899
Q ss_pred eEEeecCHHHHHHHHhcC---CCcccHh---hHHHHHhCCCCEEEeec------CCCCCCceEEeC
Q 020388 163 VILRTLSYQEAWEMSYFG---ANVLHPR---TIIPVMRYDIPIVIRNI------FNLSVPGIMICR 216 (327)
Q Consensus 163 ~~i~~is~~ea~~l~~~g---~~v~~p~---a~~~a~~~~I~v~I~n~------~~~e~~GT~I~~ 216 (327)
+++++++++|+.+++..| .++|.|| |++.+.+.+++++|.+. +.. ..||+|.+
T Consensus 250 ~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 250 QWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp EECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred eECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence 999999999999998754 4789997 66778888999999873 343 36999853
No 34
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.73 E-value=2.6e-17 Score=151.55 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=112.7
Q ss_pred HHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (327)
Q Consensus 48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD 127 (327)
...+++.|+++|+++..+++.++...++. ..++. +.++.+++ .+.|||++||++.+.+|.+.+ +++|
T Consensus 100 n~~l~~~l~~~G~~a~~l~~~d~~~~~~g----~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~g~~~~---~~~D 166 (266)
T 3k4o_A 100 NNIIIDTLQSYDIPAVSIQPSSFVVFGDK----LIFDT----SAIKEMLK--RNLVPVIHGDIVIDDKNGYRI---ISGD 166 (266)
T ss_dssp HHHHHHHHHTTTCCEEEECGGGTCEESSS----CBCCC----HHHHHHHH--TTCEEEEECEEEEESSSCEEE---ECHH
T ss_pred HHHHHHHHHHCCCcEEEeeHHHcCcccCc----eEecH----HHHHHHHH--CCCEEEEeCCEEEcCCCCeee---eCHH
Confidence 34478999999999999999998766542 33566 88888998 899999999988887777643 5689
Q ss_pred HHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHH--------hcCCCcccHh--hHHHHHhCCC
Q 020388 128 FSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS--------YFGANVLHPR--TIIPVMRYDI 197 (327)
Q Consensus 128 ~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~--------~~g~~v~~p~--a~~~a~~~~I 197 (327)
++|+.+|.+|+|+++++|||||||| +||+ ++++++..|+.++. ..+.++|.|| ++..+.+
T Consensus 167 ~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~------~i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~--- 236 (266)
T 3k4o_A 167 DIVPYLANELKADLILYATDVDGVL-IDNK------PIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC--- 236 (266)
T ss_dssp HHHHHHHHHHTCSEEEEEESSSSSB-SSSS------BCSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHcCCCEEEEEecCCeEE-eCCe------ecCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---
Confidence 9999999999999999999999999 8876 45556554444443 2456779996 3333333
Q ss_pred CEEEeecCCC---------CCCceEEeCC
Q 020388 198 PIVIRNIFNL---------SVPGIMICRP 217 (327)
Q Consensus 198 ~v~I~n~~~~---------e~~GT~I~~~ 217 (327)
+++|.++..| +..||+|.+.
T Consensus 237 ~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 237 RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 9999997543 3569999764
No 35
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.70 E-value=7.2e-17 Score=152.18 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=95.2
Q ss_pred HHHHHHhhcCCCceEEecCce----ecCCCCCeeeecCC-----cchHHHHHHHHHhCCceEEEeeccCccccCCCCCCC
Q 020388 90 KRLEKWFSQSPSNTIIATGFI----ASTPDNIPTTLKRD-----GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS 160 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi----~~~~~g~~~~lgrg-----gsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~ 160 (327)
+.|+.+++ .+.|||++|+- +.+++|.. +| ++|++|+.+|.+|+||.|+++|||||||+ ||+ .|
T Consensus 177 ~~i~~lL~--~g~IpI~~g~~g~pv~~~~~g~~----~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p 248 (316)
T 2e9y_A 177 DLIAEASA--ESPAVVALGGGGVPVVERPGGVL----EPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAV-NYG-RE 248 (316)
T ss_dssp HHHHHHHH--HCSEEEECGGGCEEEEECTTSCE----EECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-ST
T ss_pred HHHHHHHH--CCCEEEEECCCCCCeeECCCCCe----ecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CC
Confidence 77888998 78999999753 33566632 23 68999999999999999999999999999 895 78
Q ss_pred CCeEEeecCHHHHHHHHhc---CCCcccHh--hHHHHHhCCC-CEEEeecC------CCCCCceEEeC
Q 020388 161 EAVILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMICR 216 (327)
Q Consensus 161 ~a~~i~~is~~ea~~l~~~---g~~v~~p~--a~~~a~~~~I-~v~I~n~~------~~e~~GT~I~~ 216 (327)
+++++++++++|+.+++.. +.++|.|| ++..+.++|+ +++|.+.. .. ..||+|.+
T Consensus 249 ~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 249 GERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp TCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred CCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence 9999999999999999763 45779886 6667778899 78887631 22 46898863
No 36
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.69 E-value=2e-16 Score=148.11 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=124.1
Q ss_pred hhHHHHh-hhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccC---CCCC---C-CCCCchHHHHHHHHHhhcCCCceE
Q 020388 33 ESFTDFV-VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSN---Q-VDPDFSESEKRLEKWFSQSPSNTI 104 (327)
Q Consensus 33 ~~~~d~v-~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~---~~~~---~-~~~~~~~~~~~i~~~l~~~~~~vp 104 (327)
++..+.+ ..+|+ ++ ..++..|+++|++++++++.-+ .... ..+| + ..++. +.|+.+++ .+.||
T Consensus 113 ~~~l~vv~m~~~~-vn-~~lv~~L~~~G~~Av~l~gg~~-~a~~~~~~d~g~~G~i~~v~~----~~i~~lL~--~g~Ip 183 (307)
T 3zzh_A 113 EHTMAVVRKCFLE-QN-LKLVTALEQLGVRARPITSGVF-TADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALP 183 (307)
T ss_dssp HHHHHHHHHHHHH-HH-HHHHHHHHHTTCCEEEECSSSE-EEEESCHHHHBSBEEEEEECC----HHHHHHHH--HTCEE
T ss_pred HHHHHHHHHHHHH-HH-HHHHHHHHhCCCCeeEEcCCcE-EEEecCccccCccccccccCH----HHHHHHHH--CCCEE
Confidence 3444544 34565 44 5568999999999999987422 2110 0122 2 34667 88889998 78999
Q ss_pred EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHH-HHHHHhc--CC
Q 020388 105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYF--GA 181 (327)
Q Consensus 105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~e-a~~l~~~--g~ 181 (327)
|++|+ +.+.+|+.+++ ++|++|+.+|.+|+|++++|+|||||||++ |++++++++++.| +.++... +.
T Consensus 184 Vi~~~-g~~~~G~~~~i---~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~t 254 (307)
T 3zzh_A 184 ILTSL-AETASGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVK 254 (307)
T ss_dssp EECCC-EECTTCBEEBC---CHHHHHHHHHHHHCCSEEEEECSSCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSC
T ss_pred EEeCC-eECCCCcEEec---CHHHHHHHHHHhCCCCEEEEEeCCcceecC-----CCCcCCcccCHHHHHHHHHhCCCCC
Confidence 99997 78888988776 589999999999999999999999999986 5689999999976 5677654 35
Q ss_pred CcccHh--hHHHHHhC---CCCEEEeec-------CCCCCCceEEeCC
Q 020388 182 NVLHPR--TIIPVMRY---DIPIVIRNI-------FNLSVPGIMICRP 217 (327)
Q Consensus 182 ~v~~p~--a~~~a~~~---~I~v~I~n~-------~~~e~~GT~I~~~ 217 (327)
++|.|| +++.|.+. +.++.|.+. +..+..||.|.+.
T Consensus 255 GGM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 255 YGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEEEECC
T ss_pred CcHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEEEecC
Confidence 789996 44445444 788988774 2345679999764
No 37
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.66 E-value=4.4e-16 Score=153.53 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=123.6
Q ss_pred hhHHHHh-hhhcHHHHHHHHHHHHHHcCCce----eEEcccceeeccCCC--------CCC----CCCCchHHHHHHHHH
Q 020388 33 ESFTDFV-VGHGELWSAQMLAAVVRKNGIDC----KWMDTREVLIVNPTS--------SNQ----VDPDFSESEKRLEKW 95 (327)
Q Consensus 33 ~~~~d~v-~s~GE~~s~~l~~~~L~~~Gi~a----~~l~~~~~~~~~~~~--------~~~----~~~~~~~~~~~i~~~ 95 (327)
+...+.+ .+.|+. ...+.+.|. +|+++ +.+++.+..+.+... ++. ..++. +.|+.+
T Consensus 109 ~~~l~~~~~~~G~~--~~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~----~~i~~l 181 (456)
T 3d2m_A 109 ETSLGQAQQFAGTV--RSRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDT----AALRFQ 181 (456)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECH----HHHHHH
T ss_pred HHHHHHHHHHHhHH--HHHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECH----HHHHHH
Confidence 3444443 334754 345677888 99998 777766633332111 121 12344 788899
Q ss_pred hhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388 96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE 175 (327)
Q Consensus 96 l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~ 175 (327)
++ .|.|||++++ +.+..|+..++ ++|++|+.+|.+|+|+.++++|||||||++ ++++++++++.|+.+
T Consensus 182 L~--~g~ipIi~~~-~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~ 249 (456)
T 3d2m_A 182 LD--AGNIVWMPPL-GHSYGGKTFNL---DMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQS 249 (456)
T ss_dssp HH--TTCEEEECSE-EECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHH
T ss_pred HH--CCCeEEECCc-ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHH
Confidence 98 8999999996 77888888775 589999999999999999999999999986 588999999999999
Q ss_pred HHhcCCCcccH--hhHHHHHhCCCC-EEEeecCCC----------CCCceEEeCC
Q 020388 176 MSYFGANVLHP--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP 217 (327)
Q Consensus 176 l~~~g~~v~~p--~a~~~a~~~~I~-v~I~n~~~~----------e~~GT~I~~~ 217 (327)
++..|.++|.| +|+..|.++|++ ++|.++..| +..||.|.+.
T Consensus 250 ~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~ 304 (456)
T 3d2m_A 250 LAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKE 304 (456)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECC
T ss_pred HHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecc
Confidence 98888899999 488888899996 999886432 3469999765
No 38
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.63 E-value=7e-15 Score=144.51 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=121.7
Q ss_pred hcHHHHHHHHHHHHHHcCCceeEEcccceeecc---CCCCCC----CCCCchHHHHHHHHHhhcCCCceEEecCceecCC
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN---PTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP 114 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~---~~~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~ 114 (327)
+|+ + ...++..|+++|++++++++.-+ ... ...+|. ..++. +.|+.+++ .|.|||++|+ +.+.
T Consensus 123 ~~~-v-n~~lv~~L~~~G~~Avglsgg~~-~a~~~~~~d~g~vG~I~~v~~----~~I~~lL~--~G~IPVi~~~-g~~~ 192 (464)
T 4ab7_A 123 FLE-Q-NLKLVTALEQLGVRARPITSGVF-TADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPILTSL-AETA 192 (464)
T ss_dssp HHH-H-HHHHHHHHHHTTCCEEEECSSSE-EEEESCTTTTBSBEEEEEECC----HHHHHHHH--TTCEEEEESE-EECT
T ss_pred HHH-H-HHHHHHHHHhCCCCeEEECCCcE-EEEecCccccCCcCcccccCH----HHHHHHHH--CCcEEEEcCC-cCCC
Confidence 454 3 45678999999999999987332 221 112332 34666 88899998 8999999997 8888
Q ss_pred CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHH-HHHHHhc--CCCcccHh--hH
Q 020388 115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYF--GANVLHPR--TI 189 (327)
Q Consensus 115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~e-a~~l~~~--g~~v~~p~--a~ 189 (327)
+|+++++ ++|++|+.+|.+|+|++++++|||||||++ |++++|+++++.| +.++... +.++|.|| ++
T Consensus 193 ~G~~~ni---~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa 264 (464)
T 4ab7_A 193 SGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREI 264 (464)
T ss_dssp TCBEEEC---CHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred CCCEEEe---cHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 8988876 589999999999999999999999999986 4689999999976 5667654 35789997 56
Q ss_pred HHHHhC---CCCEEEeec-------CCCCCCceEEeCC
Q 020388 190 IPVMRY---DIPIVIRNI-------FNLSVPGIMICRP 217 (327)
Q Consensus 190 ~~a~~~---~I~v~I~n~-------~~~e~~GT~I~~~ 217 (327)
..|.+. +.++.|.+. +..+..||.|.+.
T Consensus 265 ~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 265 KELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp HHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEEEECC
T ss_pred HHHHHhcccCcEEEEecChHHHHHHhcCCCCceEEecC
Confidence 666654 778888773 2345679999876
No 39
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.63 E-value=1.4e-15 Score=142.96 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=94.9
Q ss_pred HHHHHHhhcCCCceEEecCceecC--C---CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388 90 KRLEKWFSQSPSNTIIATGFIAST--P---DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI 164 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~~--~---~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~ 164 (327)
+.|+.+++ .+.|||++|+.|.. + .|+.. .+++|++|+.+|.+|+||+|+++|||||||+ || .+|++++
T Consensus 173 ~~i~~lL~--~g~IpIi~Gg~Gipv~~~~~~g~~~---~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~ 245 (310)
T 2we5_A 173 ETINTLIK--NDIITISCGGGGIPVVGQELKGVEA---VIDKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQ 245 (310)
T ss_dssp HHHHHHHH--TTCEEECCGGGCEEEETTTTEECCC---CCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEE
T ss_pred HHHHHHHH--CCCEEEEECCCCCCCcCCCCCCcEe---ecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeE
Confidence 78899998 89999999874422 1 23332 2468999999999999999999999999999 88 4889999
Q ss_pred EeecCHHHHHHHHhcC---CCcccHh--hHHHHHhCCC--CEEEeec------CCCCCCceEEe
Q 020388 165 LRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI--PIVIRNI------FNLSVPGIMIC 215 (327)
Q Consensus 165 i~~is~~ea~~l~~~g---~~v~~p~--a~~~a~~~~I--~v~I~n~------~~~e~~GT~I~ 215 (327)
+++++++|+.+++..| .++|.|| |+..|.++|+ +++|.+. +..+..||+|.
T Consensus 246 i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 246 LTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp CCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred CCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence 9999999999997644 4779996 7777778898 7888752 23345688875
No 40
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.60 E-value=4.3e-15 Score=138.66 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=95.3
Q ss_pred HHHHHHhhcCCCceEEecCceec---CCCCCee-eecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388 90 KRLEKWFSQSPSNTIIATGFIAS---TPDNIPT-TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~---~~~g~~~-~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i 165 (327)
+.|+.+++ .+.|||++|+-|. ++++..+ +...+++|++|+.+|.+|+||.|+|+|||||||+ ||+ .|++++|
T Consensus 179 ~~I~~LL~--~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I 254 (317)
T 3kzf_A 179 GVIKTLID--NNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKL 254 (317)
T ss_dssp HHHHHHHH--TTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEEC
T ss_pred HHHHHHHH--CCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeEC
Confidence 67888888 8999999976554 3444333 2335779999999999999999999999999999 999 5899999
Q ss_pred eecCHHHHHHHHhc---CCCcccHh--hHHHH-HhCCCCEEEeecC------CCCCCceEEeC
Q 020388 166 RTLSYQEAWEMSYF---GANVLHPR--TIIPV-MRYDIPIVIRNIF------NLSVPGIMICR 216 (327)
Q Consensus 166 ~~is~~ea~~l~~~---g~~v~~p~--a~~~a-~~~~I~v~I~n~~------~~e~~GT~I~~ 216 (327)
++++++|+.++... +.++|.|| |+..+ ...+.+++|.+.. +.+ .||+|.+
T Consensus 255 ~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~-~GT~I~~ 316 (317)
T 3kzf_A 255 EEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGK-CGTRIIK 316 (317)
T ss_dssp CEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTS-SSEEEEC
T ss_pred cCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCC-CCeEEec
Confidence 99999999998764 34689996 44444 5566789998863 333 6999875
No 41
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.58 E-value=2.2e-14 Score=141.13 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=118.8
Q ss_pred hcHHHHHHHHHHHHHHcCCceeEEccccee--eccCCCCCC----CCCCchHHHHHHHHHhhcCCCceEEecCceecCCC
Q 020388 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD 115 (327)
Q Consensus 42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~--~~~~~~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~ 115 (327)
+| .++..+ .+.|+++|++++++.+..+. ..++..+|. ..++. +.|+.+++ .|.|||++++ +.+..
T Consensus 133 lg-~vn~~l-v~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpVi~p~-g~~~~ 203 (460)
T 3s6g_A 133 LT-QANLAL-VDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHL----DLVGSAAR--AGQAAILACL-GETPD 203 (460)
T ss_dssp HH-HHHHHH-HHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECC----HHHHHHHH--TTCEEEEECE-EECTT
T ss_pred HH-HHHHHH-HHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcH----HHHHHHHH--CCcEEEEECc-eECCC
Confidence 56 555444 56999999999999985441 112223332 34667 88899998 8999999986 77888
Q ss_pred CCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH-HHHHHHhc--CCCcccHh--hHH
Q 020388 116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYF--GANVLHPR--TII 190 (327)
Q Consensus 116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~-ea~~l~~~--g~~v~~p~--a~~ 190 (327)
|+.+++ ++|++|+.+|.+|+|++++++|||||||++ ++++|++++.. |+.++... +.++|.|| |+.
T Consensus 204 G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~ 274 (460)
T 3s6g_A 204 GTLVNI---NADVAVRALVHALQPYKVVFLTGTGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIK 274 (460)
T ss_dssp CCEEEE---CHHHHHHHHHHHHCCSEEEEECSSCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred CcEEec---CHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 988876 489999999999999999999999999985 47899999986 78888764 46789996 666
Q ss_pred HHHhCCCCEEEeecC----------CCCCCceEEeCC
Q 020388 191 PVMRYDIPIVIRNIF----------NLSVPGIMICRP 217 (327)
Q Consensus 191 ~a~~~~I~v~I~n~~----------~~e~~GT~I~~~ 217 (327)
.|.+...++.+.++. ..+..||.|.+.
T Consensus 275 ~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 275 RLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp HHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred HHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 666643245555543 334579999865
No 42
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=99.53 E-value=1.5e-14 Score=127.40 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=70.6
Q ss_pred CeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 231 ~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
....+.+.+++|+|++||.||++.||+++|+|++|++.||||.||+ +|+.+|||+|+++|.++|+++||++|++.
T Consensus 105 ~~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tSEi~IS~vV~~~d~~~Av~aLH~~F~L~ 179 (200)
T 4go7_X 105 GFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGLG 179 (200)
T ss_dssp CCSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHHTC-
T ss_pred ceeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--ccCCEEEEEEeHHHHHHHHHHHHHHhCCC
Confidence 3567899999999999999999999999999999999999999998 78999999999999999999999999764
No 43
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=99.49 E-value=3.6e-14 Score=120.43 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=84.8
Q ss_pred ccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHH
Q 020388 184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFG 263 (327)
Q Consensus 184 ~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~ 263 (327)
+..+.+..+.++||++....+.. ..-|...++........+.. +....+++.+++|+|+++|.+|++.||+++++|+
T Consensus 34 ~~~~if~~La~~~I~vd~I~~s~--~~Isf~v~~~~~~~~il~~l-~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~ 110 (157)
T 3mah_A 34 FMRKLFEIFEFYQEPVDMVATSE--VGVSLTIDNDKNLPDIVRAL-SDIGDVTVDKDMVIICIVGDMEWDNVGFEARIIN 110 (157)
T ss_dssp HHHHHHHHHHHTTCCCSCEECCS--SEEEEEESCCTTHHHHHHHH-TTTEEEEEEEEEEEEEEEC------CCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEecC--CEEEEEECChHHHHHHHHHH-hccCeEEEeCCeEEEEEECCCcccCccHHHHHHH
Confidence 33456778888999876555432 11233333322111111111 2257889999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 264 AVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 264 ~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
+|+ ||||.||+|++|+.+|+|+|+++|.++|+++||++|+..
T Consensus 111 aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh~~f~~~ 152 (157)
T 3mah_A 111 ALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNS 152 (157)
T ss_dssp TTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHHHHHHC-
T ss_pred HhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHHHHHhcc
Confidence 999 999999999999999999999999999999999999865
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=99.48 E-value=8e-14 Score=120.76 Aligned_cols=127 Identities=21% Similarity=0.279 Sum_probs=95.0
Q ss_pred CCcccHhhHHHHHhCCCC--EEEeecCCCCCCceEEeCC--CCCCc---chhhh--hcCCeeeEEeecCeeEEEeecCCC
Q 020388 181 ANVLHPRTIIPVMRYDIP--IVIRNIFNLSVPGIMICRP--PVDEN---EDEQI--IDSPVKGFATIDNLALVNVEGTGM 251 (327)
Q Consensus 181 ~~v~~p~a~~~a~~~~I~--v~I~n~~~~e~~GT~I~~~--~~~~~---~~~~~--~~~~v~~i~~~~~la~IsIvG~~~ 251 (327)
..++-.+.+.++.++||+ .++.+.+.|+..+|.|+-. ..+.. ..+.. ....+..+.+.+++|+|+++|.+|
T Consensus 26 ~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm 105 (178)
T 2dtj_A 26 KPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGM 105 (178)
T ss_dssp STTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECC
T ss_pred CccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCc
Confidence 344445678888899965 5555666555445666411 00000 00000 111356788999999999999999
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhc
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN 309 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~ 309 (327)
++.||+++++|++|+++||||.||+ +|+.+|||+|+++|.++|+++||+.|+.+..
T Consensus 106 ~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV~~~d~~~Av~~Lh~~F~l~~~ 161 (178)
T 2dtj_A 106 KSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQFQLGGE 161 (178)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHHTCCSS
T ss_pred ccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999998 6799999999999999999999999986543
No 45
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.47 E-value=4.6e-14 Score=139.03 Aligned_cols=167 Identities=12% Similarity=0.115 Sum_probs=119.3
Q ss_pred hhHHHHhh-hhcHHHHHHHHHHHHHHcCCceeEEcccce--eeccCCCCC---C-CCCCchHHHHHHHHHhhcCCCceEE
Q 020388 33 ESFTDFVV-GHGELWSAQMLAAVVRKNGIDCKWMDTREV--LIVNPTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTII 105 (327)
Q Consensus 33 ~~~~d~v~-s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~--~~~~~~~~~---~-~~~~~~~~~~~i~~~l~~~~~~vpV 105 (327)
++..+.+. ++| .++..+ .+.|+++|++++++.+..+ ...++..+| + ..++. +.|+.+++ .|.|||
T Consensus 126 ~~~l~vv~~~~g-~vn~~L-v~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpV 197 (467)
T 3s6k_A 126 PHALAIVRKVFQ-ASNLKL-VEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNL----APIEASLQ--AGSIPV 197 (467)
T ss_dssp HHHHHHHHHHHH-HHHHHH-HHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCC----HHHHTHHH--HTCBCC
T ss_pred HHHHHHHHHHHH-HHHHHH-HHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcH----HHHHHHHH--CCCEEE
Confidence 34444443 356 555555 5699999999999998544 111222333 2 35677 88888998 789999
Q ss_pred ecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH-HHHHHHhc--CCC
Q 020388 106 ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYF--GAN 182 (327)
Q Consensus 106 v~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~-ea~~l~~~--g~~ 182 (327)
+++. +.+..|+.+++ ++|++|+.+|.+|+|++++++|||||||+.| ++++++++.. |+.++... +.+
T Consensus 198 i~pv-g~~~~G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~------~~lI~~i~~~~e~~~l~~~~~~tG 267 (467)
T 3s6k_A 198 ITSL-GETPSGQILNV---NADFAANELVQELQPYKIIFLTGTGGLLDAE------GKLIDSINLSTEYDHLMQQPWING 267 (467)
T ss_dssp CCSC-CCCSSSCCCBC---CHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS------CCCCCCCCTTTTTHHHHTSSSCCS
T ss_pred EECc-eECCCCcEEec---CHHHHHHHHHHhcCCCEEEEEecccceeCCC------CCCccccChHHHHHHHHhcCCCCC
Confidence 9953 44667887765 5899999999999999999999999999853 6788999885 77777653 467
Q ss_pred cccHh--hHHHHHhCCCCEEEeecCCC----------CCCceEEeCC
Q 020388 183 VLHPR--TIIPVMRYDIPIVIRNIFNL----------SVPGIMICRP 217 (327)
Q Consensus 183 v~~p~--a~~~a~~~~I~v~I~n~~~~----------e~~GT~I~~~ 217 (327)
+|.|| |+..|.+.+.++.+.++..| +..||.|.+.
T Consensus 268 GM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 268 GMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp HHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 89996 66667664334666555432 3569999755
No 46
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=99.46 E-value=1.3e-13 Score=119.76 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=93.2
Q ss_pred CCCcccHhhHHHHHhCCCCEEEeecCCCCC-Cc-eEEe---CCCCCCcch---hhhh--cCCeeeEEeecCeeEEEeecC
Q 020388 180 GANVLHPRTIIPVMRYDIPIVIRNIFNLSV-PG-IMIC---RPPVDENED---EQII--DSPVKGFATIDNLALVNVEGT 249 (327)
Q Consensus 180 g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~-~G-T~I~---~~~~~~~~~---~~~~--~~~v~~i~~~~~la~IsIvG~ 249 (327)
+..++..+-+..+.++||++.......++. .| +.|+ +.. +.... ++.. .-.+..+.+.+++|+|++||.
T Consensus 26 ~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~ 104 (181)
T 3s1t_A 26 DIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-VGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGA 104 (181)
T ss_dssp SSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-THHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEE
T ss_pred CCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-HHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEec
Confidence 344555667888889999876655443331 22 2332 221 11111 1100 013567889999999999999
Q ss_pred CCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 250 GMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 250 ~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
||++.||+++++|++|+++||||.||+ +|+.+|||+|+++|.++|+++||+.|+..
T Consensus 105 gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~Is~vV~~~d~~~Av~aLH~~f~l~ 160 (181)
T 3s1t_A 105 GMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGLG 160 (181)
T ss_dssp CCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHHTCC
T ss_pred ccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999 67999999999999999999999999754
No 47
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.39 E-value=6.3e-13 Score=131.68 Aligned_cols=121 Identities=23% Similarity=0.332 Sum_probs=93.2
Q ss_pred HhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchh---hhhc--------C---CeeeEEeecCeeEEEeecCCC
Q 020388 186 PRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDE---QIID--------S---PVKGFATIDNLALVNVEGTGM 251 (327)
Q Consensus 186 p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~---~~~~--------~---~v~~i~~~~~la~IsIvG~~~ 251 (327)
.+.+..+.++||++........+..-+.+.++.. ..... ...- . .+..+.+.+++|+|++||.+|
T Consensus 336 a~if~~La~~~InV~~IsQ~tse~~Is~~V~~~d-~~~a~~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~a~vsvVG~gm 414 (473)
T 3c1m_A 336 ARIFKALGEEEVNVILISQGSSETNISLVVSEED-VDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVGAGM 414 (473)
T ss_dssp HHHHHHHHHTTCCEEEEEECCTTCCEEEEEEGGG-HHHHHHHHHHHHCC----CTTSCCCEEEEEEEEEEEEEEEECTTT
T ss_pred HHHHHHHHHcCCcEEEEEecCCCCEEEEEEechH-HHHHHHHHHHHHhhhcccccccccccceEEEeCCcEEEEEEecCC
Confidence 4667778889999877764322222233333211 11111 1001 1 156788999999999999999
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
++.||+++++|++|+++||||.||+|++|+.+|||+|+++|.++|+++||+.|+..
T Consensus 415 ~~~~Gvaak~f~aL~~~~InI~misqgtSe~~Is~vV~~~d~~~Av~aLh~~f~~~ 470 (473)
T 3c1m_A 415 RGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK 470 (473)
T ss_dssp TTCTTHHHHHHHHHHHHTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHHHHTTC
T ss_pred CCChhHHHHHHHHHHHCCCCEEEEecCCCCceEEEEEcHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999853
No 48
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=99.38 E-value=6.9e-13 Score=113.59 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=88.6
Q ss_pred CcccHhhHHHHHhCCCCEEEeecCCCC-CCc-eEE---eCCCCCCc--chhh---hhcCCeeeEEeecCeeEEEeecCCC
Q 020388 182 NVLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IMI---CRPPVDEN--EDEQ---IIDSPVKGFATIDNLALVNVEGTGM 251 (327)
Q Consensus 182 ~v~~p~a~~~a~~~~I~v~I~n~~~~e-~~G-T~I---~~~~~~~~--~~~~---~~~~~v~~i~~~~~la~IsIvG~~~ 251 (327)
.++-.+.+..+.++||++.......+. ..| +.| .+..+... ..+. .... + .+.+.+++|+|+++|.+|
T Consensus 28 ~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~-~-~v~~~~~~a~vsvVG~gm 105 (167)
T 2dt9_A 28 PGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIG-G-EAILRPDIAKVSIVGVGL 105 (167)
T ss_dssp TTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHC-C-EEEEECSEEEEEEEESSG
T ss_pred CCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhC-C-cEEEeCCEEEEEEECCCc
Confidence 344456677888889987665544321 123 222 22211000 0011 0112 3 788899999999999999
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
++.||+++++|++|+++||||.||+ +|+.++||+|+++|.++|+++||+.|+..
T Consensus 106 ~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vv~~~d~~~Av~~Lh~~f~~~ 159 (167)
T 2dt9_A 106 ASTPEVPAKMFQAVASTGANIEMIA--TSEVRISVIIPAEYAEAALRAVHQAFELD 159 (167)
T ss_dssp GGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTC--
T ss_pred ccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEEEEEEeHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998 67999999999999999999999999765
No 49
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=99.34 E-value=2.1e-12 Score=110.62 Aligned_cols=123 Identities=21% Similarity=0.152 Sum_probs=90.1
Q ss_pred CCcccHhhHHHHHhCCCCEEEeecCCCCCCc-e---EEeCCCCCC--cchhhhh--cCCeeeEEeecCeeEEEeecCCCC
Q 020388 181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG-I---MICRPPVDE--NEDEQII--DSPVKGFATIDNLALVNVEGTGMA 252 (327)
Q Consensus 181 ~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~G-T---~I~~~~~~~--~~~~~~~--~~~v~~i~~~~~la~IsIvG~~~~ 252 (327)
..++-.+-+..+.++||++......... .| + .+....... ...+... .-.++.+.+.+++++|+++|.+|+
T Consensus 36 ~~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~ 114 (167)
T 2re1_A 36 KPGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMR 114 (167)
T ss_dssp CTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCT
T ss_pred CcCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcC
Confidence 3444456778888999987665544221 13 2 222321100 0001101 113467889999999999999999
Q ss_pred CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
+.||+++++|++|+++||||.|++ +|+.+++|+|+++|.++++++||++|+.
T Consensus 115 ~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~~~d~~~av~~Lh~~f~l 166 (167)
T 2re1_A 115 SHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDEKYMELATRVLHKAFNL 166 (167)
T ss_dssp TCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEeHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998 6899999999999999999999999964
No 50
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.29 E-value=1.3e-11 Score=116.50 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=87.9
Q ss_pred HHHHHHhhcCCCceEEecCc--eecCC-----CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCC
Q 020388 90 KRLEKWFSQSPSNTIIATGF--IASTP-----DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA 162 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gf--i~~~~-----~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a 162 (327)
..|..+++ .+.|||..|. ++... .|... .+++|++|+.+|.+|+||.|+|+|||||||+.+|+ |++
T Consensus 194 ~~I~~L~~--~g~Ivi~~ggggipv~~~~~~~~G~~~---vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~ 266 (332)
T 4axs_A 194 DAIKQNVN--NGCVCIVGGGGGIPTIIQDNQYIGVDG---VIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQ 266 (332)
T ss_dssp HHHHHHHH--TTCEEECCGGGCEEEEESSSCEEECSS---CCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTC
T ss_pred HHHHHhhc--CCeEEEecccCCCCccccCCcccCcee---eechHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cch
Confidence 67788887 7888887653 11111 12222 25689999999999999999999999999998876 788
Q ss_pred eEEeecCHHHHHHHHhc---CCCcccHh--hHHHHHhCCC--CEEEeecC------CCCCCceEEe
Q 020388 163 VILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI--PIVIRNIF------NLSVPGIMIC 215 (327)
Q Consensus 163 ~~i~~is~~ea~~l~~~---g~~v~~p~--a~~~a~~~~I--~v~I~n~~------~~e~~GT~I~ 215 (327)
++|++++.+|+.++... +.++|.|| |+..+.+.+. .++|.+.. +. ..||+|.
T Consensus 267 ~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g-~~GT~Iv 331 (332)
T 4axs_A 267 KALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKG-LSGTKII 331 (332)
T ss_dssp EECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTT-SSSEEEB
T ss_pred hhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCC-CCCcEEe
Confidence 99999999999999864 45789996 6666666654 56665432 22 2599885
No 51
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.22 E-value=1.7e-11 Score=124.68 Aligned_cols=74 Identities=30% Similarity=0.416 Sum_probs=70.3
Q ss_pred eeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhh
Q 020388 233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL 308 (327)
Q Consensus 233 ~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~ 308 (327)
..+.+++++|+|++||.||+++||+++++|++|+++||||.||+ +|+.+|||+|+++|.++|+++||+.|+.+.
T Consensus 519 ~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tSEi~Is~vV~~~~~~~Av~alh~~F~l~~ 592 (600)
T 3l76_A 519 AAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKISCVVPQDRGVDALKAAHSAFNLAG 592 (600)
T ss_dssp CEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTTTS
T ss_pred ceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cCCceEEEEEeHHHHHHHHHHHHHHhCCCC
Confidence 46889999999999999999999999999999999999999999 789999999999999999999999997653
No 52
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.18 E-value=3.4e-11 Score=117.59 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=90.3
Q ss_pred cccHhhHHHHHhCCCCEEEeecCCCC-CCc-eEEe---CCCCCC--cchhhhhcC--CeeeEEeecCeeEEEeecCCCCC
Q 020388 183 VLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IMIC---RPPVDE--NEDEQIIDS--PVKGFATIDNLALVNVEGTGMAG 253 (327)
Q Consensus 183 v~~p~a~~~a~~~~I~v~I~n~~~~e-~~G-T~I~---~~~~~~--~~~~~~~~~--~v~~i~~~~~la~IsIvG~~~~~ 253 (327)
++-.+-+..+.++||++........+ ..| +.|+ +..... ....+.... .+..+.+.+++|+|++||.+|++
T Consensus 277 g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~ 356 (421)
T 3ab4_A 277 GEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKS 356 (421)
T ss_dssp THHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGTS
T ss_pred cHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCccc
Confidence 33346678888999997766432211 013 2332 221110 001111111 24578889999999999999999
Q ss_pred cccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA 307 (327)
Q Consensus 254 ~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~ 307 (327)
+||+++++|++|+++||||.||+ +|+.+|||+|+++|.++|+++||+.|+..
T Consensus 357 ~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vV~~~d~~~Av~~Lh~~f~~~ 408 (421)
T 3ab4_A 357 HPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQFQLG 408 (421)
T ss_dssp CTTHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred CccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998 67999999999999999999999999863
No 53
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=99.12 E-value=1.2e-10 Score=102.41 Aligned_cols=94 Identities=27% Similarity=0.369 Sum_probs=79.7
Q ss_pred hcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc-----cEEEEEeccccHHHHHHHHHH
Q 020388 228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 228 ~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~-----~sIs~~V~~~d~~~av~~Lh~ 302 (327)
+++.+++|+..+|+|+|+|.| |.+.||+++++|+.|+++||+|+||+|+.|+ ..++|++++++.+++...|.+
T Consensus 22 E~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~ 99 (200)
T 4go7_X 22 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDS 99 (200)
T ss_dssp CSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHT
T ss_pred ccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHH
Confidence 346799999999999999987 8999999999999999999999999998763 568999999999999999876
Q ss_pred HHHhhhcCCCCce----eEEEEeecc
Q 020388 303 KFREALNAGRLSQ----FSASILSQD 324 (327)
Q Consensus 303 ~f~~~~~~~~~~~----~~~~~~~~~ 324 (327)
+..++....+.. .+++|+|..
T Consensus 100 -~~~~~~~~~v~~~~~iakVSvVG~G 124 (200)
T 4go7_X 100 -LRNEIGFSQLLYDDHIGKVSLIGAG 124 (200)
T ss_dssp -THHHHCCSEEEEECCEEEEEEEEES
T ss_pred -HHhhhceeeEEEecCeeeeeeeccc
Confidence 555665555543 678888864
No 54
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=99.06 E-value=4.8e-10 Score=95.77 Aligned_cols=91 Identities=25% Similarity=0.322 Sum_probs=76.8
Q ss_pred CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC-----ccEEEEEeccccHHHHHHHHHHHH
Q 020388 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s-----~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
+.+++|+..+|+++|+++| +.+.||+++++|+.|+++||+|+||+|+.+ +.+++|+|+++|.+++.+.|++ +
T Consensus 5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~-~ 81 (167)
T 2dt9_A 5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP-V 81 (167)
T ss_dssp CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH-H
T ss_pred CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHH-H
Confidence 4699999999999999998 678899999999999999999999999876 7899999999999999999987 5
Q ss_pred HhhhcCCCCce----eEEEEeecc
Q 020388 305 REALNAGRLSQ----FSASILSQD 324 (327)
Q Consensus 305 ~~~~~~~~~~~----~~~~~~~~~ 324 (327)
..++.. .++- -+++|+|.+
T Consensus 82 ~~~~~~-~v~~~~~~a~vsvVG~g 104 (167)
T 2dt9_A 82 LAEIGG-EAILRPDIAKVSIVGVG 104 (167)
T ss_dssp HHHHCC-EEEEECSEEEEEEEESS
T ss_pred HHHhCC-cEEEeCCEEEEEEECCC
Confidence 555552 2222 347788864
No 55
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=99.04 E-value=6.5e-10 Score=96.40 Aligned_cols=93 Identities=27% Similarity=0.383 Sum_probs=78.6
Q ss_pred cCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc-----cEEEEEeccccHHHHHHHHHHH
Q 020388 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 229 ~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~-----~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
...+++|+.++|+++|+|.| |.+.||+.+++|+.|+++||+|+||+|+.++ .+++|+|++++.+++.+.|++
T Consensus 4 ~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~- 80 (181)
T 3s1t_A 4 DPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDS- 80 (181)
T ss_dssp CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHH-
T ss_pred CCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHH-
Confidence 35689999999999999996 8899999999999999999999999997665 589999999999999988987
Q ss_pred HHhhhcCCCCce----eEEEEeecc
Q 020388 304 FREALNAGRLSQ----FSASILSQD 324 (327)
Q Consensus 304 f~~~~~~~~~~~----~~~~~~~~~ 324 (327)
+..++....++- -+++|+|..
T Consensus 81 ~~~el~~~~v~~~~~va~VsvVG~g 105 (181)
T 3s1t_A 81 LRNEIGFSQLLYDDHIGKVSLIGAG 105 (181)
T ss_dssp THHHHCCSEEEEESCEEEEEEEEEC
T ss_pred HHHhcCcceEEEeCCEEEEEEEecc
Confidence 555664444432 577888864
No 56
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=98.99 E-value=9e-10 Score=94.09 Aligned_cols=93 Identities=30% Similarity=0.415 Sum_probs=75.6
Q ss_pred cCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccccHHHHHHHHHHHHH
Q 020388 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 229 ~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
.+.+++|+..+|+++|+|.| |.+.||+++++|+.|+++||+|+||+|+.+ +.+++|+|++++.+++.+.|++ +.
T Consensus 13 ~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~a~~~l~~-~~ 89 (167)
T 2re1_A 13 RAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSE-RQ 89 (167)
T ss_dssp --CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHHHHHHHHH-SS
T ss_pred CCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHHHHHHHHH-HH
Confidence 34699999999999999998 888999999999999999999999998766 7899999999999999988887 44
Q ss_pred hhhcCCCCc----eeEEEEeecc
Q 020388 306 EALNAGRLS----QFSASILSQD 324 (327)
Q Consensus 306 ~~~~~~~~~----~~~~~~~~~~ 324 (327)
.++....+. -..++|+|.+
T Consensus 90 ~~l~~~~i~~~~~~a~vsvvG~~ 112 (167)
T 2re1_A 90 DSIGAASIDGDDTVCKVSAVGLG 112 (167)
T ss_dssp TTTTCSEEEEESSEEEEEEECSS
T ss_pred HHcCCceEEecCCEEEEEEECCC
Confidence 444433222 2457888875
No 57
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=98.92 E-value=1.4e-09 Score=91.95 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=64.0
Q ss_pred hcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEecccc-HHHHHHHHHH
Q 020388 228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKE-VKAVAEALES 302 (327)
Q Consensus 228 ~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d-~~~av~~Lh~ 302 (327)
+...+++|+.++|+++|++.|.+|.+.||+.+++|+.|+++||+|+||+| ++.+|+|+|++++ ..++++.|++
T Consensus 5 ~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~--s~~~Isf~v~~~~~~~~il~~l~~ 78 (157)
T 3mah_A 5 EKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT--SEVGVSLTIDNDKNLPDIVRALSD 78 (157)
T ss_dssp --CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC--CSSEEEEEESCCTTHHHHHHHHTT
T ss_pred CCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe--cCCEEEEEECChHHHHHHHHHHhc
Confidence 35679999999999999999999999999999999999999999999995 5789999999987 6666665554
No 58
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=98.73 E-value=2.2e-08 Score=86.32 Aligned_cols=91 Identities=25% Similarity=0.326 Sum_probs=73.9
Q ss_pred CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC-----ccEEEEEeccccHHHHHHHHHHHH
Q 020388 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s-----~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
..+++|+.++|+++|+|.+ +.+.||+++++|+.|+++||+|+||+|+.+ +.+|+|+++.++.+++.+.|.+ +
T Consensus 4 ~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~-~ 80 (178)
T 2dtj_A 4 AVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKK-L 80 (178)
T ss_dssp CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHT-T
T ss_pred CcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHH-H
Confidence 4589999999999999986 578899999999999999999999998755 7889999999999999988876 4
Q ss_pred HhhhcCCCCce----eEEEEeec
Q 020388 305 REALNAGRLSQ----FSASILSQ 323 (327)
Q Consensus 305 ~~~~~~~~~~~----~~~~~~~~ 323 (327)
..++....++. .+++|+|.
T Consensus 81 ~~~~~~~~v~~~~~~a~VsvVG~ 103 (178)
T 2dtj_A 81 QVQGNWTNVLYDDQVGKVSLVGA 103 (178)
T ss_dssp TTTTTCSEEEEESCEEEEEEEEE
T ss_pred HHhcCCCeEEEeCCeEEEEEEcC
Confidence 44443322222 44577775
No 59
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=98.33 E-value=1.3e-06 Score=86.89 Aligned_cols=62 Identities=19% Similarity=0.374 Sum_probs=58.0
Q ss_pred CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH
Q 020388 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV 293 (327)
Q Consensus 230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~ 293 (327)
..+++|+..+|+++|+|.|.+|.+.+|+.+++|+.|+++||+|+||++ |+.+|||+|++++.
T Consensus 330 ~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s--se~sis~~v~~~~~ 391 (510)
T 2cdq_A 330 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKL 391 (510)
T ss_dssp CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGG
T ss_pred cccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe--CCCeEEEEEechHh
Confidence 468999999999999999999999999999999999999999999985 59999999998874
No 60
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=98.14 E-value=9e-07 Score=86.89 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=58.1
Q ss_pred cCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH
Q 020388 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV 293 (327)
Q Consensus 229 ~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~ 293 (327)
...+++|+..+|+++|++.|.+|.+.+|+.+++|+.|+++||+|+||++ |+.+|||+|++++.
T Consensus 296 ~~~v~gIa~~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~s--s~~sis~~v~~~~~ 358 (449)
T 2j0w_A 296 PPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGS 358 (449)
T ss_dssp CCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE--ETTEEEEEECCCCC
T ss_pred ccccccceeeCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEe--CCCeEEEEEecccc
Confidence 3468999999999999999999999999999999999999999999995 58999999998753
No 61
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.07 E-value=7e-06 Score=67.71 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=52.6
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCE-EEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANV-IMISQASSEHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V-~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
..+++|.+|.+.||+++++|+.|+++|||| .+++.. ++...+++++.+|.++|+++||+.
T Consensus 71 ~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~~~ 131 (144)
T 2f06_A 71 ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLKEK 131 (144)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHT
T ss_pred eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHHHc
Confidence 347888889999999999999999999999 556642 678899999999999999999986
No 62
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=97.38 E-value=0.00011 Score=71.92 Aligned_cols=92 Identities=11% Similarity=0.224 Sum_probs=75.2
Q ss_pred CeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcC
Q 020388 231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNA 310 (327)
Q Consensus 231 ~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~ 310 (327)
.+++|+..+|+++|++.|.+|.+.||+.+++|+.|+++||+|+||++ ++.++||+|++++..+.+..+.++|..++..
T Consensus 288 ~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~--~~~~is~~V~~~d~~~~~~~~~~el~~~~~~ 365 (446)
T 3tvi_A 288 TITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPS--GVDSVSLVIEDCKLDGKCDKIIEEIKKQCNP 365 (446)
T ss_dssp CCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCE--ETTEEEEEEEHHHHTTTHHHHHHHHHHHSCC
T ss_pred ceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEec--CCCEEEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999999999985 4789999999998765444444555555544
Q ss_pred CCCce----eEEEEeecc
Q 020388 311 GRLSQ----FSASILSQD 324 (327)
Q Consensus 311 ~~~~~----~~~~~~~~~ 324 (327)
+.++- -.++|+|..
T Consensus 366 ~~v~v~~~vA~VSvVG~g 383 (446)
T 3tvi_A 366 DSIEIHPNMALVATVGTG 383 (446)
T ss_dssp SEEEEEEEEEEEEEECGG
T ss_pred CcEEEeCCeEEEEEECCC
Confidence 44442 577888764
No 63
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=96.56 E-value=0.013 Score=47.69 Aligned_cols=55 Identities=9% Similarity=0.113 Sum_probs=42.4
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC-ccE-EEEEeccccHHHHHHHHHH
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-EHS-VCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s-~~s-Is~~V~~~d~~~av~~Lh~ 302 (327)
.|++. +.+.||.++++|+.|+++||||++|+|+.+ +.. ++|+ ..|.+++.+.|++
T Consensus 8 ~i~v~---v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~~d~~~a~~~L~~ 64 (144)
T 2f06_A 8 QLSIF---LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--VSDPDKAYKALKD 64 (144)
T ss_dssp EEEEE---ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--ESCHHHHHHHHHH
T ss_pred EEEEE---ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--eCCHHHHHHHHHH
Confidence 34553 567899999999999999999999998643 223 4565 4688888888875
No 64
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=95.09 E-value=0.1 Score=42.43 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=56.4
Q ss_pred EEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388 235 FATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 235 i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
+........|++.|..-.+..|+.+.+-+.|+++||.+..||. -.+=-++|++++.++|+++|.+..
T Consensus 56 ~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iSt---y~tD~IlVp~~~~~~Ai~aL~~~~ 122 (134)
T 1zhv_A 56 VRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVST---FDGDHLLVRSNDLEKTADLLANAG 122 (134)
T ss_dssp SEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEEC---SSCEEEEEEGGGHHHHHHHHHHTT
T ss_pred CccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEEe---ccccEEEEeHHHHHHHHHHHHHcC
Confidence 3667788899998875557889999999999999999999983 233458899999999999998854
No 65
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=94.35 E-value=0.11 Score=42.10 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=51.9
Q ss_pred EeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388 236 ATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 236 ~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
....+...|++.|..-.+-.|+.+.+-+.|+++||.+..+|.- .+=-++|++++.++|+++|.+
T Consensus 66 ~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iSty---~tDhIlVp~~~~~~A~~~L~~ 129 (133)
T 1zvp_A 66 ESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGY---YHDHIFVQKEKAQQALQALGE 129 (133)
T ss_dssp CCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECS---SCEEEEEEGGGHHHHHHHHTT
T ss_pred ccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEEec---cccEEEEehhHHHHHHHHHHH
Confidence 4456788888888655578999999999999999999999832 344588999999999999864
No 66
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=93.33 E-value=0.38 Score=35.32 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=43.3
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--c--cEEEEEecc-ccHHHHHHHHHH
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--E--HSVCFAVPE-KEVKAVAEALES 302 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~--~sIs~~V~~-~d~~~av~~Lh~ 302 (327)
.+.|++.|. +.||+++++.+.|+++|+||..+++... . ..+.+-++. .+.+++.+.|.+
T Consensus 5 ~~~l~v~~~---DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (91)
T 1zpv_A 5 KAIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEA 68 (91)
T ss_dssp EEEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred eEEEEEEEC---CCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 467888874 6899999999999999999999887542 2 233343454 566777777765
No 67
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=91.75 E-value=0.66 Score=39.28 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=37.2
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEecc
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPE 290 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~ 290 (327)
...|+|.|. +.||+++++.+.|+++|+||.-++|... ...+.+.+..
T Consensus 6 ~~~itv~~~---DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 6 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcC---CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 467899984 6899999999999999999999988643 3455555543
No 68
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=88.53 E-value=0.63 Score=39.75 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=32.8
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS 279 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~ 279 (327)
...+|+|.|. +.||+++++.+.|+++|+||.-+.|..
T Consensus 92 ~~~iltv~g~---DrpGiva~Vt~~La~~g~nI~~~~~~t 128 (195)
T 2nyi_A 92 REYELYVEGP---DSEGIVEAVTAVLAKKGANIVELETET 128 (195)
T ss_dssp EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cEEEEEEEeC---CCcCHHHHHHHHHHHcCCCEEEceeee
Confidence 4578999984 689999999999999999999999864
No 69
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=87.92 E-value=0.83 Score=38.28 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccc--cHHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES 302 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~--d~~~av~~Lh~ 302 (327)
.+.||+++++.+.|++.|+||..++.+.++ ..+.+.+... ..+++.+.|++
T Consensus 12 eNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~K 68 (165)
T 2pc6_A 12 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNK 68 (165)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcC
Confidence 478999999999999999999988765443 4577777633 33344444443
No 70
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=87.80 E-value=0.93 Score=37.92 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=39.5
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccc--cHHHHHHHHHH
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES 302 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~--d~~~av~~Lh~ 302 (327)
.|++.. .+.||+++++.+.|++.|+||..++.+.++ ..+.|.+... ..+++.+.|++
T Consensus 5 ~IsV~v---~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~K 67 (164)
T 2f1f_A 5 ILSVLL---ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHK 67 (164)
T ss_dssp EEEEEE---ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEE---eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcC
Confidence 345553 478999999999999999999988765443 4577778733 33444444444
No 71
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=86.32 E-value=2.8 Score=30.02 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=34.6
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc--cEEEEEeccccH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAVPEKEV 293 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~--~sIs~~V~~~d~ 293 (327)
..|.+.+ .+.||+++++.+.|++.|+||..+.+.... ..+.+.+.-.+.
T Consensus 6 ~~l~v~~---~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~ 56 (88)
T 2ko1_A 6 AGIRIVG---EDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT 56 (88)
T ss_dssp EEEEEEE---ECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH
T ss_pred EEEEEEE---ECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH
Confidence 3455664 478999999999999999999988875432 334444444333
No 72
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=83.80 E-value=1.8 Score=37.11 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=39.9
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccccHHHHHHHHHHHH
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
.|++. +.+.||+++|+...|++.|+||..++.+.++ ..+.++|... +++++.|.+.+
T Consensus 31 ~LsVl---VeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL 91 (193)
T 2fgc_A 31 LVSML---VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQA 91 (193)
T ss_dssp EEEEE---EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHH
T ss_pred EEEEE---ECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHh
Confidence 45554 4578999999999999999999988865432 4577777643 34444454443
No 73
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=80.67 E-value=2.6 Score=38.70 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=31.8
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS 279 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~ 279 (327)
++++++|. +.||+.+++.+.|+++|+||.-++|..
T Consensus 23 ~iLtv~c~---DrpGIVa~VS~~La~~g~NI~d~~q~~ 57 (302)
T 3o1l_A 23 FRLVIACP---DRVGIVAKVSNFLASHNGWITEASHHS 57 (302)
T ss_dssp EEEEEEEE---CCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEECC---CCCCHHHHHHHHHHHCCCCEEEeeEEe
Confidence 67999984 789999999999999999999999873
No 74
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=79.17 E-value=6.3 Score=33.02 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|++.|+....+ .++.| |.+.+.+.++++++ ...+.|++|-.|.+.
T Consensus 23 tN~~~l~~~L~~~G~~v~~~-----~iv~D--------d~~~I~~~l~~a~~--~~DlVittGG~g~~~----------- 76 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRG-----FVVMD--------DLDEIGWAFRVALE--VSDLVVSSGGLGPTF----------- 76 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS--------CHHHHHHHHHHHHH--HCSEEEEESCCSSST-----------
T ss_pred HHHHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHHHh--cCCEEEEcCCCcCCc-----------
Confidence 35678899999999986543 23333 34566677777776 457778887544333
Q ss_pred chHHHHHHHHHhCCce
Q 020388 126 SDFSAAIMGALLRAHQ 141 (327)
Q Consensus 126 sD~~A~~lA~~l~A~~ 141 (327)
-|.+.-.+|.+++.+.
T Consensus 77 ~D~T~ea~a~~~~~~l 92 (172)
T 3kbq_A 77 DDMTVEGFAKCIGQDL 92 (172)
T ss_dssp TCCHHHHHHHHHTCCC
T ss_pred ccchHHHHHHHcCCCe
Confidence 3999999999999543
No 75
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=78.50 E-value=8.5 Score=32.18 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=31.6
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS 279 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~ 279 (327)
...+|++.|. +.||+++++.+.|+++|+||..+.+.+
T Consensus 92 ~~~~l~v~~~---D~~Gil~~v~~~l~~~~~nI~~~~~~t 128 (192)
T 1u8s_A 92 YTVEVYVESD---DKLGLTEKFTQFFAQRQIGMASLSAQT 128 (192)
T ss_dssp EEEEEEEEES---CCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ceEEEEEEeC---CCccHHHHHHHHHHHcCCcHHHhhhhc
Confidence 4467888873 689999999999999999999988764
No 76
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=78.32 E-value=3.2 Score=39.21 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=33.3
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS 280 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s 280 (327)
...+|+++|. +.||+.+++.+.|+++|+||.-++|...
T Consensus 11 ~~~~lt~~g~---Dr~Giv~~vs~~l~~~~~nI~d~~q~~~ 48 (415)
T 3p96_A 11 VSVLITVTGV---DQPGVTATLFEVLSRHGVELLNVEQVVI 48 (415)
T ss_dssp EEEEEEEEEE---CCTTHHHHHHHHHTTTTCEEEEEEEEEE
T ss_pred CeEEEEEEcC---CCCCHHHHHHHHHHHCCCCEEEeeeEEE
Confidence 3478999994 6899999999999999999999998653
No 77
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=78.00 E-value=3.3 Score=35.14 Aligned_cols=63 Identities=25% Similarity=0.250 Sum_probs=44.2
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEecccc--HHHHHHHHHHHHH
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKE--VKAVAEALESKFR 305 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~~d--~~~av~~Lh~~f~ 305 (327)
....|+|.|. +.||+.+++.+.|+++|.||.-+.|... ...+.+.+.... .......|.+.|.
T Consensus 4 ~~~~ltv~~~---DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~ 70 (195)
T 2nyi_A 4 QSFVVSVAGS---DRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALP 70 (195)
T ss_dssp EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHST
T ss_pred eEEEEEEEeC---CCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHH
Confidence 3468899984 6899999999999999999999888654 344455554322 1123556666664
No 78
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=77.71 E-value=3.8 Score=37.23 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=31.8
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
-..++++|. +.||+.+++.+.|+++|+||.-++|.
T Consensus 8 ~~vLtv~c~---DrpGIVa~Vs~~La~~g~NI~d~~q~ 42 (286)
T 3n0v_A 8 TWILTADCP---SMLGTVDVVTRYLFEQRCYVTEHHSF 42 (286)
T ss_dssp CEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cEEEEEEeC---CCCCHHHHHHHHHHHCCCCeeeeeee
Confidence 467999984 78999999999999999999999987
No 79
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=75.64 E-value=4.5 Score=36.91 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=32.3
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
+-..++++|. +.||+.+++.+.|+++|+||.-++|.
T Consensus 9 ~~~vLtv~c~---Dr~GIVa~Vs~~La~~g~NI~d~~q~ 44 (292)
T 3lou_A 9 HQFVLTLSCP---SAAGQVAAVVGLLDRHRCYVDELTVF 44 (292)
T ss_dssp CEEEEEEEEE---SCSCHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CcEEEEEEcC---CCCCHHHHHHHHHHHCCCCEEeeEEE
Confidence 3467999984 78999999999999999999999987
No 80
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=73.58 E-value=8.2 Score=35.03 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=32.3
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
+-.+++++|. +.||+.+++.+.|+++|+||.-++|.
T Consensus 6 ~~~vLtv~c~---Dr~GIVa~Vs~~La~~g~NI~d~~q~ 41 (287)
T 3nrb_A 6 NQYVLSLACQ---DAPGIVSEVSTFLFNNGANIVEAEQF 41 (287)
T ss_dssp TEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CeEEEEEECC---CCCCHHHHHHHHHHHCCCCEEeeeee
Confidence 4578999984 78999999999999999999999985
No 81
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=73.02 E-value=3.9 Score=37.18 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=31.5
Q ss_pred eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
-.+++++|. +.||+.+++.+.|+++|+||.-++|.
T Consensus 6 ~~iLtv~g~---DrpGIVa~Vs~~La~~g~NI~d~~q~ 40 (288)
T 3obi_A 6 QYVLTLSCP---DRAGIVSAVSTFLFENGQNILDAQQY 40 (288)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eEEEEEECC---CCCCHHHHHHHHHHHCCCcEEeeeee
Confidence 367999984 78999999999999999999999984
No 82
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=70.07 E-value=5.3 Score=34.88 Aligned_cols=58 Identities=9% Similarity=0.183 Sum_probs=41.1
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc-------cEEEEEeccccHHHHHHHHHH
Q 020388 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE-------HSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~-------~sIs~~V~~~d~~~av~~Lh~ 302 (327)
+-|.+.. .+.||+++++.+.|+++++||..+++.... -.+.+-+++.+.+++++.|.+
T Consensus 5 VtL~I~a---~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~~Le~LL~kLrk 69 (223)
T 1y7p_A 5 RGLRIIA---ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKT 69 (223)
T ss_dssp EEEEEEE---ECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHT
T ss_pred EEEEEEE---cCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCCCHHHHHHHHhC
Confidence 3455554 478999999999999999999999987653 356666777777877777765
No 83
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=59.97 E-value=40 Score=26.87 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=36.5
Q ss_pred EEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHH
Q 020388 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK 294 (327)
Q Consensus 244 IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~ 294 (327)
|.|.+ .+.+|+++.+.+.|+++++|+..+..... ..+.+-++..+.+
T Consensus 3 ~~v~~---~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~i~~~~~~~~~~ 49 (190)
T 2jhe_A 3 LEVFC---EDRLGLTRELLDLLVLRGIDLRGIEIDPI-GRIYLNFAELEFE 49 (190)
T ss_dssp EEEEE---CSCTTHHHHHHHHHHHTTCCEEEEEEETT-TEEEEEECCCCHH
T ss_pred EEEEE---ecCCcHHHHHHHHHHHcCCCeEEEEEecC-CEEEEEEEeCCHH
Confidence 45555 36899999999999999999999987554 3477777765543
No 84
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=57.14 E-value=28 Score=33.17 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++..+++.|++.|..+..+ .++.| |.+...+.+++.++ ..++.|++|-.+. |..
T Consensus 209 N~~~L~~~l~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~a~~--~~DlVittGG~s~-----------g~~ 262 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINL-----GIVGD--------NPDDLLNALNEGIS--RADVIITSGGVSM-----------GEK 262 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEE-----EEECS--------SHHHHHHHHHHHHH--HCSEEEEESCCSS-----------SCC
T ss_pred chHHHHHHHHHCCCEEEEE-----eecCC--------CHHHHHHHHHHHHh--cCCEEEEcCCCcC-----------CCc
Confidence 5678899999999877543 34443 34556677777776 4577788874332 234
Q ss_pred hHHHHHHHHHhCCceEEEee
Q 020388 127 DFSAAIMGALLRAHQVTIWT 146 (327)
Q Consensus 127 D~~A~~lA~~l~A~~l~~~t 146 (327)
|++...++..++. ++.||.
T Consensus 263 D~t~~al~~~lg~-~~~f~~ 281 (419)
T 2fts_A 263 DYLKQVLDIDLHA-QIHFGR 281 (419)
T ss_dssp HHHHHHHHTTTCC-EEEESE
T ss_pred ccHHHHHHHHcCC-ceEEeE
Confidence 9999988888886 455553
No 85
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=55.38 E-value=27 Score=28.80 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|++.|+.+... .++.| |.+.+.+.++++++....++.|++|-.+.+.+
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~a~~~~~~DlVittGG~g~~~~---------- 84 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDK-----AIVKE--------NRYAIRAQVSAWIASDDVQVVLITGGTGLTEG---------- 84 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS--------CHHHHHHHHHHHHHSSSCCEEEEESCCSSSTT----------
T ss_pred ccHHHHHHHHHHCCCeEeEE-----EEeCC--------CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCC----------
Confidence 46778899999999876443 23333 34556677877776212567788885554433
Q ss_pred chHHHHHHHHHhC
Q 020388 126 SDFSAAIMGALLR 138 (327)
Q Consensus 126 sD~~A~~lA~~l~ 138 (327)
|++.-.++..++
T Consensus 85 -D~t~ea~~~~~~ 96 (172)
T 1mkz_A 85 -DQAPEALLPLFD 96 (172)
T ss_dssp -CCHHHHHGGGCS
T ss_pred -CCHHHHHHHHhc
Confidence 777666666654
No 86
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=54.57 E-value=30 Score=28.44 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-|+..+++.|++.|+.+... .++.| |.+...+.++........++.|++|-.+.+.+
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~-----~iV~D--------d~~~i~~al~~~~a~~~~DlVittGG~g~~~~---------- 96 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGY-----SLVPD--------DKIKILKAFTDALSIDEVDVIISTGGTGYSPT---------- 96 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS--------CHHHHHHHHHHHHTCTTCCEEEEESCCSSSTT----------
T ss_pred chHHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHHHhcCCCCEEEecCCcccCCC----------
Confidence 46778999999999987543 23343 24445566665554224477888885554443
Q ss_pred chHHHHHHHHHh
Q 020388 126 SDFSAAIMGALL 137 (327)
Q Consensus 126 sD~~A~~lA~~l 137 (327)
|.+.-.++..+
T Consensus 97 -D~t~ea~~~~~ 107 (178)
T 3iwt_A 97 -DITVETIRKLF 107 (178)
T ss_dssp -CCHHHHHGGGC
T ss_pred -CchHHHHHHhh
Confidence 66665555443
No 87
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=52.35 E-value=32 Score=28.15 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc
Q 020388 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (327)
Q Consensus 46 ~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg 125 (327)
-++..+++.|++.|+..... .++.| |.+.+.+.++++++....++.|++|-.+.+.+
T Consensus 31 sn~~~l~~~L~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~~~~~~~~DlVittGG~g~g~~---------- 87 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSY-----EIVKD--------DKESIQQAVLAGYHKEDVDVVLTNGGTGITKR---------- 87 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEE-----EEECS--------SHHHHHHHHHHHHTCTTCSEEEEECCCSSSTT----------
T ss_pred ChHHHHHHHHHHCCCeEeEE-----EEeCC--------CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCC----------
Confidence 46778899999999876443 23343 34556677777765213467788875554433
Q ss_pred chHHHHHHHHHhC
Q 020388 126 SDFSAAIMGALLR 138 (327)
Q Consensus 126 sD~~A~~lA~~l~ 138 (327)
|.+.-.++..++
T Consensus 88 -D~t~ea~~~~~~ 99 (169)
T 1y5e_A 88 -DVTIEAVSALLD 99 (169)
T ss_dssp -CCHHHHHHTTCS
T ss_pred -CCcHHHHHHHcC
Confidence 777666665543
No 88
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=51.25 E-value=1.4e+02 Score=27.14 Aligned_cols=127 Identities=11% Similarity=0.042 Sum_probs=71.3
Q ss_pred CCCeEEeecCHHHHHHHHhcCC----CcccHhhHHHHHhCC-CCEEEeecCCCCCCceEEe--CCCCCCcchhhhhcCCe
Q 020388 160 SEAVILRTLSYQEAWEMSYFGA----NVLHPRTIIPVMRYD-IPIVIRNIFNLSVPGIMIC--RPPVDENEDEQIIDSPV 232 (327)
Q Consensus 160 ~~a~~i~~is~~ea~~l~~~g~----~v~~p~a~~~a~~~~-I~v~I~n~~~~e~~GT~I~--~~~~~~~~~~~~~~~~v 232 (327)
|++++++.-+-.+|.++...+. -.+-+ -.-|..+| .++.-.+..+...--|.+. ...... ...
T Consensus 127 p~~~~v~~~STA~AA~~va~~~~~~~AAIas--~~AA~~Yg~L~il~~~I~D~~~N~TRFlvl~~~~~~--------~~~ 196 (313)
T 3mwb_A 127 PNADYVPGSSTAASAMGLLEDDAPYEAAICA--PLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGAL--------PER 196 (313)
T ss_dssp TTCEEEECSCHHHHHHHTTSTTCSCSEEEEC--HHHHHHCTTCEEEESCCCSCTTCEEEEEEEECSCCC--------CCC
T ss_pred CCCEEEEcCcHHHHHHHHHhCCCCCccccCc--HHHHHHcCChhhhhhcccCCCcceeEEEEEecCCCC--------CCC
Confidence 5677777777777777664332 22333 23345588 8888777655433456553 111000 000
Q ss_pred eeEEeecCeeEEEeecCCC-CCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEec------cccHHHHHHHHHH
Q 020388 233 KGFATIDNLALVNVEGTGM-AGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVP------EKEVKAVAEALES 302 (327)
Q Consensus 233 ~~i~~~~~la~IsIvG~~~-~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~------~~d~~~av~~Lh~ 302 (327)
.+-.+.|++=. + .+.||.+.++++.|+.+|||.-.|-.=.+ .-.-.|.|+ +..+.++++.|++
T Consensus 197 ------~~~~kTSl~f~-~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~ 269 (313)
T 3mwb_A 197 ------TGADKTTVVVP-LPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHR 269 (313)
T ss_dssp ------CSSEEEEEEEE-CSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ------CCCCeEEEEEE-eCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHH
Confidence 11112232211 3 36899999999999999999988762222 123345543 3456777777766
Q ss_pred H
Q 020388 303 K 303 (327)
Q Consensus 303 ~ 303 (327)
.
T Consensus 270 ~ 270 (313)
T 3mwb_A 270 I 270 (313)
T ss_dssp H
T ss_pred h
Confidence 3
No 89
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=49.86 E-value=37 Score=28.17 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++..+++.|++.|..+... .++.| |.+.+.+.++++++....++.|++|-.+.+. -
T Consensus 41 n~~~L~~~l~~~G~~v~~~-----~iv~D--------d~~~I~~al~~a~~~~~~DlVittGG~s~g~-----------~ 96 (178)
T 2pjk_A 41 SGDIIKQLLIENGHKIIGY-----SLVPD--------DKIKILKAFTDALSIDEVDVIISTGGTGYSP-----------T 96 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----EEECS--------CHHHHHHHHHHHHTCTTCCEEEEESCCSSST-----------T
T ss_pred HHHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCC-----------C
Confidence 5678899999999876442 23343 3456667777777621157888887544333 3
Q ss_pred hHHHHHHHHHhC
Q 020388 127 DFSAAIMGALLR 138 (327)
Q Consensus 127 D~~A~~lA~~l~ 138 (327)
|++.-.++..++
T Consensus 97 D~t~eal~~~~~ 108 (178)
T 2pjk_A 97 DITVETIRKLFD 108 (178)
T ss_dssp CCHHHHHGGGCS
T ss_pred cchHHHHHHHhc
Confidence 777777766543
No 90
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=43.36 E-value=38 Score=27.59 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++..+++.|++.|+.+... .++.| |.+.+.+.+++.++....++.|++|-.+.+. -
T Consensus 22 n~~~l~~~l~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~~~~~~~~DlVittGG~g~g~-----------~ 77 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAY-----ELVPD--------EPPMIKKVLRLWADREGLDLILTNGGTGLAP-----------R 77 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEE-----EEECS--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST-----------T
T ss_pred hHHHHHHHHHHCCCeEeEE-----EEcCC--------CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC-----------C
Confidence 5667889999999765432 23343 3455667777777521346778887544333 3
Q ss_pred hHHHHHHHHHh
Q 020388 127 DFSAAIMGALL 137 (327)
Q Consensus 127 D~~A~~lA~~l 137 (327)
|++.-.++..+
T Consensus 78 D~t~ea~~~~~ 88 (164)
T 2is8_A 78 DRTPEATRELL 88 (164)
T ss_dssp CCHHHHHHTTC
T ss_pred CChHHHHHHHh
Confidence 77777777654
No 91
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=41.80 E-value=91 Score=29.48 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++..+++.|++.|..+..+ .++.| |.+..++.+++.++ ..++.|++|-.+. |..
T Consensus 205 n~~~L~~~l~~~G~~v~~~-----~iv~D--------d~~~i~~al~~a~~--~~DlvittGG~s~-----------g~~ 258 (411)
T 1g8l_A 205 NRLAVHLMLEQLGCEVINL-----GIIRD--------DPHALRAAFIEADS--QADVVISSGGVSV-----------GEA 258 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----EEECS--------CHHHHHHHHHHHHH--HCSEEEECSSSCS-----------SSC
T ss_pred chHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHHhh--cCCEEEECCCCCC-----------CCc
Confidence 5678899999999876543 33343 34556677777775 4577788874332 234
Q ss_pred hHHHHHHHHHhCCceEEEe
Q 020388 127 DFSAAIMGALLRAHQVTIW 145 (327)
Q Consensus 127 D~~A~~lA~~l~A~~l~~~ 145 (327)
|++--.++.. + ++.||
T Consensus 259 D~t~~al~~~-G--~i~f~ 274 (411)
T 1g8l_A 259 DYTKTILEEL-G--EIAFW 274 (411)
T ss_dssp SHHHHHHHHH-S--EEEEE
T ss_pred ccHHHHHHhc-C--cEEEE
Confidence 8888888765 6 57776
No 92
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=39.36 E-value=75 Score=30.01 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++..+++.|++.|.....+ .++.| |.+...+.+++.++ ..++.|++|-.+. |.-
T Consensus 208 N~~~L~~~l~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~a~~--~~DlVittGG~s~-----------g~~ 261 (402)
T 1uz5_A 208 NGRALCDAINELGGEGIFM-----GVARD--------DKESLKALIEKAVN--VGDVVVISGGASG-----------GTK 261 (402)
T ss_dssp HHHHHHHHHHHHTSEEEEE-----EEECS--------SHHHHHHHHHHHHH--HCSEEEEECCC----------------
T ss_pred hHHHHHHHHHhCCCeEEEE-----EEeCC--------CHHHHHHHHHHHhh--CCCEEEEcCCCCC-----------CCc
Confidence 5678899999999876443 33343 34556677777776 4577788874332 223
Q ss_pred hHHHHHHHHHhCCceEEEe
Q 020388 127 DFSAAIMGALLRAHQVTIW 145 (327)
Q Consensus 127 D~~A~~lA~~l~A~~l~~~ 145 (327)
|++-..++.. + ++.||
T Consensus 262 D~t~~al~~~-G--~~~f~ 277 (402)
T 1uz5_A 262 DLTASVIEEL-G--EVKVH 277 (402)
T ss_dssp CHHHHHHHHH-S--EEEEE
T ss_pred ccHHHHHHhh-C--CEEEe
Confidence 8888888765 6 67777
No 93
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=38.57 E-value=81 Score=25.67 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++..+++.|++.|..+.. ..++.| | +.+.+.++++++. ..++.|++|-.+.+. -
T Consensus 28 n~~~l~~~l~~~G~~v~~-----~~iv~D--------d-~~i~~al~~a~~~-~~DlVittGG~s~g~-----------~ 81 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQ-----PEVVAD--------G-SPVGEALRKAIDD-DVDVILTSGGTGIAP-----------T 81 (164)
T ss_dssp HHHHHHHHHHHTTCEECC-----CEEECS--------S-HHHHHHHHHHHHT-TCSEEEEESCCSSST-----------T
T ss_pred HHHHHHHHHHHCCCEEEE-----EEEeCC--------H-HHHHHHHHHHHhC-CCCEEEECCCCCCCC-----------C
Confidence 567889999999986532 223333 3 5566778777741 347778877444333 3
Q ss_pred hHHHHHHHHHhC
Q 020388 127 DFSAAIMGALLR 138 (327)
Q Consensus 127 D~~A~~lA~~l~ 138 (327)
|++.-.++..++
T Consensus 82 D~t~eal~~~~~ 93 (164)
T 3pzy_A 82 DSTPDQTVAVVD 93 (164)
T ss_dssp CCHHHHHHTTCS
T ss_pred ccHHHHHHHHhc
Confidence 777777766654
No 94
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=36.16 E-value=70 Score=26.76 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=47.9
Q ss_pred HhhhhcHHH-------HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388 38 FVVGHGELW-------SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (327)
Q Consensus 38 ~v~s~GE~~-------s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi 110 (327)
.+++.|.-+ ++..+++.|++.|..+... .++.| |.+.+++.+++.+. ...++.|++|-.
T Consensus 34 aIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~-----~iv~D--------d~~~I~~al~~a~~-~~~DlVIttGGt 99 (185)
T 3rfq_A 34 LVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGV-----VAVEA--------DEVDIRNALNTAVI-GGVDLVVSVGGT 99 (185)
T ss_dssp EEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEE-----EEECS--------CHHHHHHHHHHHHH-TTCSEEEEESCC
T ss_pred EEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHHHh-CCCCEEEECCCC
Confidence 466666544 7889999999999876443 23333 34556677777763 145778888754
Q ss_pred ecCCCCCeeeecCCcchHHHHHHHHHhC
Q 020388 111 ASTPDNIPTTLKRDGSDFSAAIMGALLR 138 (327)
Q Consensus 111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~ 138 (327)
+.+.+ |++.-.++..++
T Consensus 100 s~g~~-----------D~t~eal~~l~~ 116 (185)
T 3rfq_A 100 GVTPR-----------DVTPESTREILD 116 (185)
T ss_dssp SSSTT-----------CCHHHHHHTTCS
T ss_pred CCCCc-----------ccHHHHHHHHhc
Confidence 44333 666666665543
No 95
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=35.81 E-value=82 Score=30.21 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=35.3
Q ss_pred CCcccHHHHHHHHHHhCCCCEEEEEecCC-----ccEEEEEecc---ccHHHHHHHHH
Q 020388 252 AGVPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPE---KEVKAVAEALE 301 (327)
Q Consensus 252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s-----~~sIs~~V~~---~d~~~av~~Lh 301 (327)
.+.||+++++-+.|+++||++..+.|-.. ...+.++... .++.+++..|.
T Consensus 367 ~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~ 424 (444)
T 3mtj_A 367 FDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIE 424 (444)
T ss_dssp C-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHT
T ss_pred cCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHh
Confidence 47899999999999999999999988532 2466666544 44455554443
No 96
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=35.79 E-value=1.1e+02 Score=23.60 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHhCCCCEEEEEecCC-----ccEEEEEeccccHHHHHHHHHHHHH
Q 020388 254 VPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKFR 305 (327)
Q Consensus 254 ~~~v~a~if~~L~~~gI~V~~Isq~~s-----~~sIs~~V~~~d~~~av~~Lh~~f~ 305 (327)
+|.-+.++-++|.+.|+..--++.... ...+-++|++++.+++++++.+.-.
T Consensus 14 rp~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~ 70 (114)
T 3m05_A 14 QDKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASH 70 (114)
T ss_dssp EHHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcC
Confidence 466788999999999999744432211 4789999999999999999998753
No 97
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=35.65 E-value=65 Score=30.40 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=27.0
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~ 278 (327)
+...+.++- .+.||+++++-+.|+++||||....-+
T Consensus 330 ~~~rl~~~h---~d~PGvi~~i~~iL~~~~iNIa~m~~~ 365 (404)
T 1sc6_A 330 GGRRLMHIH---ENRPGVLTALNKIFAEQGVNIAAQYLQ 365 (404)
T ss_dssp SSEEEEEEE---ESCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CcceEEEEe---CCCCCHHHHHHHHHHHcCCCHHHhhcc
Confidence 344455553 478999999999999999999655543
No 98
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=35.39 E-value=52 Score=26.79 Aligned_cols=66 Identities=9% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHHHHH----HHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeec
Q 020388 47 SAQMLAAV----VRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK 122 (327)
Q Consensus 47 s~~l~~~~----L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lg 122 (327)
++..+++. |++.|+.+... .++.| |.+.+.+.++++++. ..++.|++|-.+.+.+
T Consensus 26 n~~~l~~~~~~~l~~~G~~v~~~-----~iv~D--------d~~~I~~~l~~a~~~-~~DlVittGG~g~~~~------- 84 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYSYELISE-----VVVPE--------GYDTVVEAIATALKQ-GARFIITAGGTGIRAK------- 84 (167)
T ss_dssp HHHHHHHHHCC----CEEEEEEE-----EEECS--------SHHHHHHHHHHHHHT-TCSEEEEESCCSSSTT-------
T ss_pred HHHHHHHhHHhHHHHCCCEEeEE-----EEeCC--------CHHHHHHHHHHHHhC-CCCEEEECCCCCCCCC-------
Confidence 45677888 89888765432 23343 345666778777752 2467788885554433
Q ss_pred CCcchHHHHHHHHHh
Q 020388 123 RDGSDFSAAIMGALL 137 (327)
Q Consensus 123 rggsD~~A~~lA~~l 137 (327)
|++.-.++..+
T Consensus 85 ----D~t~ea~~~~~ 95 (167)
T 2g2c_A 85 ----NQTPEATASFI 95 (167)
T ss_dssp ----CCHHHHHHTTC
T ss_pred ----cChHHHHHHHh
Confidence 77766666654
No 99
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=34.41 E-value=1.1e+02 Score=25.43 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHH---cCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeec
Q 020388 46 WSAQMLAAVVRK---NGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK 122 (327)
Q Consensus 46 ~s~~l~~~~L~~---~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lg 122 (327)
-++..+++.|++ .|...... .++.| |.+.+.+.++++++....++.|++|-.+.+.
T Consensus 34 ~n~~~L~~~L~~~~~~G~~v~~~-----~iv~D--------d~~~I~~al~~a~~~~~~DlVIttGGtg~g~-------- 92 (189)
T 1jlj_A 34 RSGINLKDLVQDPSLLGGTISAY-----KIVPD--------EIEEIKETLIDWCDEKELNLILTTGGTGFAP-------- 92 (189)
T ss_dssp HHHHHHHHHHHCTTTTCCEEEEE-----EEECS--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST--------
T ss_pred hHHHHHHHHHhchhcCCcEEEEE-----EEeCC--------CHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC--------
Confidence 356788889988 78765432 23343 3455667777776522346778887544333
Q ss_pred CCcchHHHHHHHHHh
Q 020388 123 RDGSDFSAAIMGALL 137 (327)
Q Consensus 123 rggsD~~A~~lA~~l 137 (327)
-|++.-.++..+
T Consensus 93 ---~D~t~eal~~~~ 104 (189)
T 1jlj_A 93 ---RDVTPEATKEVI 104 (189)
T ss_dssp ---TCCHHHHHHHHC
T ss_pred ---cccHHHHHHHHh
Confidence 377777777654
No 100
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=34.27 E-value=1.2e+02 Score=24.57 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=41.2
Q ss_pred HHHHHHHHHHc-----CCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeec
Q 020388 48 AQMLAAVVRKN-----GIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK 122 (327)
Q Consensus 48 ~~l~~~~L~~~-----Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lg 122 (327)
+..+++.|++. |..+.. ..++.| |.+.+.+.+++.++....++.|++|-.+.+.
T Consensus 27 ~~~l~~~l~~~~~~~~G~~v~~-----~~iv~D--------d~~~i~~~l~~~~~~~~~DlVittGG~g~g~-------- 85 (167)
T 1uuy_A 27 GPRAVSVVDSSSEKLGGAKVVA-----TAVVPD--------EVERIKDILQKWSDVDEMDLILTLGGTGFTP-------- 85 (167)
T ss_dssp HHHHHHHHHHTTTTTTSEEEEE-----EEEECS--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST--------
T ss_pred HHHHHHHHHhccccCCCcEEeE-----EEEcCC--------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCC--------
Confidence 45667778877 765533 233343 3455667777776421356778887444333
Q ss_pred CCcchHHHHHHHHHhC
Q 020388 123 RDGSDFSAAIMGALLR 138 (327)
Q Consensus 123 rggsD~~A~~lA~~l~ 138 (327)
-|++.-.++..++
T Consensus 86 ---~D~t~~a~~~~~~ 98 (167)
T 1uuy_A 86 ---RDVTPEATKKVIE 98 (167)
T ss_dssp ---TCCHHHHHHHHCS
T ss_pred ---CCchHHHHHHHhc
Confidence 3888888888775
No 101
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=30.83 E-value=83 Score=21.82 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388 256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304 (327)
Q Consensus 256 ~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f 304 (327)
....++-..|...|+.|.-..++ ...++.+.|+.++.+.....|.+..
T Consensus 17 ~~~g~v~~~L~~~~~~I~~~~Y~-~~V~l~v~vp~~~~~~~~~~L~d~t 64 (76)
T 3lh2_S 17 FDITGILWLLGQVDGKIINSDVQ-AFVLLRVALPAAKVAEFSAKLADFS 64 (76)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEE-EEEEEEEEECC-CC-CHHHHHHHHH
T ss_pred cCHHHHHHHHHHCCCEEEccccc-CeEEEEEEECHHHHHHHHHHHHHHh
Confidence 45778999999999999888875 4699999999999988888876643
No 102
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=30.68 E-value=1.6e+02 Score=24.12 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=41.4
Q ss_pred HHHHHHHHHH---HcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecC
Q 020388 47 SAQMLAAVVR---KNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKR 123 (327)
Q Consensus 47 s~~l~~~~L~---~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgr 123 (327)
++..+++.|+ +.|+.+ .. .++.| |.+.+.+.++++++....++.|++|-.+.+.+
T Consensus 26 n~~~l~~~l~~l~~~G~~v-~~-----~iv~D--------d~~~I~~~l~~~~~~~~~DlVittGG~g~g~~-------- 83 (178)
T 2pbq_A 26 SGKAIIDYLKDVIITPFEV-EY-----RVIPD--------ERDLIEKTLIELADEKGCSLILTTGGTGPAPR-------- 83 (178)
T ss_dssp HHHHHHHHHHHHBCSCCEE-EE-----EEECS--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTT--------
T ss_pred hHHHHHHHHHHHHhCCCEE-EE-----EEcCC--------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC--------
Confidence 5567888887 889865 32 23343 34556677777775213467788875554433
Q ss_pred CcchHHHHHHHHHhC
Q 020388 124 DGSDFSAAIMGALLR 138 (327)
Q Consensus 124 ggsD~~A~~lA~~l~ 138 (327)
|++.-.++..++
T Consensus 84 ---D~t~ea~~~~~~ 95 (178)
T 2pbq_A 84 ---DVTPEATEAVCE 95 (178)
T ss_dssp ---CCHHHHHHHHCS
T ss_pred ---CchHHHHHHHhC
Confidence 777777776653
No 103
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=30.64 E-value=90 Score=30.44 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=40.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHHH
Q 020388 251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh~ 302 (327)
..+.||+++++...|.++||||-.+.-+.. +--+.+-+++.--+++++.|.+
T Consensus 461 ~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~~~~~l~~l~~ 516 (529)
T 1ygy_A 461 YVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAA 516 (529)
T ss_dssp ESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCCCHHHHHHHhc
Confidence 457899999999999999999987764432 2345566888877888888876
No 104
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=30.25 E-value=1.5e+02 Score=24.80 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (327)
Q Consensus 47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs 126 (327)
++..+++.|++.|...... ...++.| |.+.+.+.++++++....++.|++|-.+.+..
T Consensus 24 n~~~L~~~L~~~G~~~~v~---~~~iV~D--------d~~~I~~al~~a~~~~~~DlVitTGGtg~g~~----------- 81 (195)
T 1di6_A 24 GIPALEEWLTSALTTPFEL---ETRLIPD--------EQAIIEQTLCELVDEMSCHLVLTTGGTGPARR----------- 81 (195)
T ss_dssp HHHHHHHHHHHHBCSCEEE---EEEEEES--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTT-----------
T ss_pred HHHHHHHHHHHcCCCCceE---EEEEeCC--------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC-----------
Confidence 5678899999999873111 1223343 34556677777775223467788885554443
Q ss_pred hHHHHHHHHHh
Q 020388 127 DFSAAIMGALL 137 (327)
Q Consensus 127 D~~A~~lA~~l 137 (327)
|.+.-.++..+
T Consensus 82 D~T~ea~~~~~ 92 (195)
T 1di6_A 82 DVTPDATLAVA 92 (195)
T ss_dssp CCHHHHHHHTC
T ss_pred ccHHHHHHHHh
Confidence 66655555543
No 105
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=26.04 E-value=1.1e+02 Score=24.54 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=38.4
Q ss_pred CeeeecCCcchHHHHHHHHHhC--CceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHh
Q 020388 117 IPTTLKRDGSDFSAAIMGALLR--AHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR 194 (327)
Q Consensus 117 ~~~~lgrggsD~~A~~lA~~l~--A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~ 194 (327)
.+..+|.|+|-..|..++..|. -..+.+..+-......-+...++.-+| - ++..|..----++++.|++
T Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI-~--------iS~sG~t~~~~~~~~~ak~ 121 (183)
T 2xhz_A 51 KVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVI-A--------ISNSGESSEITALIPVLKR 121 (183)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEE-E--------ECSSSCCHHHHHHHHHHHT
T ss_pred eEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEE-E--------EeCCCCCHHHHHHHHHHHH
Confidence 4445566677777877777763 123444444332222111122222211 1 1112322222356888899
Q ss_pred CCCCEEEeec
Q 020388 195 YDIPIVIRNI 204 (327)
Q Consensus 195 ~~I~v~I~n~ 204 (327)
.|++++....
T Consensus 122 ~g~~vi~IT~ 131 (183)
T 2xhz_A 122 LHVPLICITG 131 (183)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEEC
Confidence 9999765543
No 106
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=25.88 E-value=1.4e+02 Score=24.59 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388 257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK 303 (327)
Q Consensus 257 v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~ 303 (327)
=...+...|.++||++..-. ......++.|++++..++...|...
T Consensus 13 da~~i~~~L~~~gI~~~y~~--~~~g~~~I~Vp~~~~~~ar~~La~~ 57 (171)
T 1yj7_A 13 EANQMQALLLSNDVNVSKEM--DKSGNMTLSVAAADFVRAITILNNN 57 (171)
T ss_dssp HHHHHHHHHHHTTCCCEEEE--CTTSCEEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCceEE--CCCCCEEEEeCHHHHHHHHHHHHHc
Confidence 37889999999999755533 2234478999999999999888764
No 107
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=22.89 E-value=3.4e+02 Score=24.12 Aligned_cols=131 Identities=10% Similarity=0.019 Sum_probs=68.4
Q ss_pred CCCeEEeecCHHHHHHHHhcCC----CcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe---CCCCCCcchhhhhcCCe
Q 020388 160 SEAVILRTLSYQEAWEMSYFGA----NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC---RPPVDENEDEQIIDSPV 232 (327)
Q Consensus 160 ~~a~~i~~is~~ea~~l~~~g~----~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~---~~~~~~~~~~~~~~~~v 232 (327)
|++++++.-|-.+|.++...+. ..+-+ -.-|..+|.++.-.+..+....-|.+. ....... .+.....-
T Consensus 120 p~~~~~~~~sTA~AA~~va~~~~~~~AAIas--~~AA~~ygL~il~~~I~D~~~N~TRF~vl~~~~~~~~--~~~~~~~~ 195 (283)
T 2qmx_A 120 PQIRAEAAYDTAGSAKMVAESRDKSALAIAS--KRAGELYGLDILKENLADEEWNITRFFCIAHENNPDI--SHLKVRPD 195 (283)
T ss_dssp TTSEEEECSCHHHHHHHHHHTTCTTEEEEEC--HHHHHHTTCEEEESSCSSCCCCEEEEEEEEETTCCCC--TTSSSCCE
T ss_pred CCceEEEcCCHHHHHHHHHhCCCCCeEEeCC--HHHHHHcCCceecccCcCCCCCeeeEEEEecCccccc--cccccCCC
Confidence 4567777777777766665331 22333 223455888887777655433356553 1111000 00000011
Q ss_pred eeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEecc------ccHHHHHHHHH
Q 020388 233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPE------KEVKAVAEALE 301 (327)
Q Consensus 233 ~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~------~d~~~av~~Lh 301 (327)
.+ .+.+.|.+. +.+.||.+.++++.|+.+|||.-.|-.=.+ .-.-.|.|+= ..+.++++.|+
T Consensus 196 ~~----~~ktsl~f~---~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~ 266 (283)
T 2qmx_A 196 VA----RQKTSIVFA---LPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLR 266 (283)
T ss_dssp EE----EEEEEEEEE---EECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHH
T ss_pred CC----CceEEEEEE---cCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHH
Confidence 11 122222222 236799999999999999999988862222 2344555532 23455555554
No 108
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=21.67 E-value=70 Score=29.49 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCceEEecCceecCCCCCeee--ec--CCcchHHHHHHHHHhCCceEE-EeeccCcccc
Q 020388 90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LK--RDGSDFSAAIMGALLRAHQVT-IWTDVDGVYS 153 (327)
Q Consensus 90 ~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~--lg--rggsD~~A~~lA~~l~A~~l~-~~tDV~Gi~t 153 (327)
+.|..++..+..+=+| ++.|+.|.... +| . |+..+|-.+|..|||..++ =.||+.|++.
T Consensus 69 R~IAPll~dK~~DPaV----vvvDe~G~~vIpLLsGH~-GAN~LA~~IA~~lga~pVITTAtD~~g~~a 132 (336)
T 3eeq_A 69 RIVCKYAKSKTEDPAI----VCIDDKINYVIPLLGGHW-GANDIARELSVILNSTPIITTAAEIKGKLS 132 (336)
T ss_dssp HHHHHHCCCTTTCCEE----EEECTTCCEEEEEECTTT-THHHHHHHHHHHTTCEECCC-------CCC
T ss_pred HHhCchhccCCCCCCE----EEEeCCCCEEEEeccCch-hHHHHHHHHHHHhCCEEEEeCchhhcCCcc
Confidence 5667777643334445 47788898543 44 4 7899999999999997644 4557777664
No 109
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=21.52 E-value=1.7e+02 Score=27.72 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=32.7
Q ss_pred CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEe
Q 020388 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV 288 (327)
Q Consensus 240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V 288 (327)
+...|.++ -++.||+++++-+.|+++||||.-... .+.-.+..++
T Consensus 342 ~~~r~~~~---h~n~p~~~~~i~~~~~~~~~ni~~~~~-~~~~~~~y~~ 386 (416)
T 3k5p_A 342 TGTRFMHV---HENRPGILNSLMNVFSHHHINIASQFL-QTDGEVGYLV 386 (416)
T ss_dssp SSEEEEEE---ECCCTTHHHHHHHHHHHTTCCEEEEEE-EECSSCEEEE
T ss_pred CceEEEEE---ecCCccHHHHHHHHHHHcCCCHHHHhc-cCCCceEEEE
Confidence 45677776 356799999999999999999986653 2334455554
No 110
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=21.41 E-value=2.7e+02 Score=24.50 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCceeEEcccceeeccCCCCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (327)
Q Consensus 49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD 127 (327)
+-+..++.+.|++...+.+.. |+ ...+.++-.+.++...+...+.+||+.|- +.+ .+ .|
T Consensus 24 ~~lv~~li~~Gv~gl~~~Gtt---------GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv-g~~----~t------~~ 83 (289)
T 2yxg_A 24 EENINFLIENGVSGIVAVGTT---------GESPTLSHEEHKKVIEKVVDVVNGRVQVIAGA-GSN----CT------EE 83 (289)
T ss_dssp HHHHHHHHHTTCSEEEESSTT---------TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC-CCS----SH------HH
T ss_pred HHHHHHHHHCCCCEEEECccc---------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-CCC----CH------HH
Confidence 345777788999887665432 11 23444455566666665445789999773 211 11 13
Q ss_pred HH-HHHHHHHhCCceEEEee
Q 020388 128 FS-AAIMGALLRAHQVTIWT 146 (327)
Q Consensus 128 ~~-A~~lA~~l~A~~l~~~t 146 (327)
.. -+..|+.+||+.+.+.+
T Consensus 84 ai~la~~a~~~Gadavlv~~ 103 (289)
T 2yxg_A 84 AIELSVFAEDVGADAVLSIT 103 (289)
T ss_dssp HHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 32 35667888998877664
No 111
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=21.35 E-value=2.3e+02 Score=21.44 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHhCCCCEEEEEecC----------------------CccEEEEEeccccHHHHHHHHHHHHHh
Q 020388 255 PGTANAIFGAVKDVGANVIMISQAS----------------------SEHSVCFAVPEKEVKAVAEALESKFRE 306 (327)
Q Consensus 255 ~~v~a~if~~L~~~gI~V~~Isq~~----------------------s~~sIs~~V~~~d~~~av~~Lh~~f~~ 306 (327)
|.-+.++.++|.+.|+.-.-+++.. +...+.+++++++.+++++++.+....
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 12 PEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 4556666677776666544433211 133489999999999999999997643
No 112
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.29 E-value=2.7e+02 Score=24.77 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCceeEEcccceeeccCCCCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (327)
Q Consensus 49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD 127 (327)
+-++.++.+.|++...+.+.. |+ .....++-.+.++...+...+.+||+.|- |.+ .+ .|
T Consensus 35 ~~lv~~li~~Gv~Gl~v~GtT---------GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGv-g~~----~t------~~ 94 (303)
T 2wkj_A 35 RRLVQFNIQQGIDGLYVGGST---------GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHV-GCV----ST------AE 94 (303)
T ss_dssp HHHHHHHHHTTCSEEEESSTT---------TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-CCS----SH------HH
T ss_pred HHHHHHHHHcCCCEEEECeec---------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEec-CCC----CH------HH
Confidence 345777888999887665432 11 23444455566666665445789999873 311 11 13
Q ss_pred HH-HHHHHHHhCCceEEEee
Q 020388 128 FS-AAIMGALLRAHQVTIWT 146 (327)
Q Consensus 128 ~~-A~~lA~~l~A~~l~~~t 146 (327)
.. .+..|+.+||+.+.+.+
T Consensus 95 ai~la~~A~~~Gadavlv~~ 114 (303)
T 2wkj_A 95 SQQLAASAKRYGFDAVSAVT 114 (303)
T ss_dssp HHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEecC
Confidence 32 35667888998877664
No 113
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=21.26 E-value=74 Score=23.92 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=40.9
Q ss_pred EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccE-----EEEEeccccHHHHHHHHHH
Q 020388 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHS-----VCFAVPEKEVKAVAEALES 302 (327)
Q Consensus 243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~s-----Is~~V~~~d~~~av~~Lh~ 302 (327)
+..++.. .+|-.++-+-..|..+||++..-.+..+ +.+ .-++|+++|.++|...|.+
T Consensus 23 M~eL~ra---~d~v~a~~~k~LLe~aGI~~fv~De~ms~~~GeIg~~P~rwlV~eed~~~Ar~LL~~ 86 (97)
T 2hfv_A 23 LRELLRT---NDAVLLSAVGALLDGADIGHLVLDQNMSILEGSLGVIPRRVLVHEDDLAGARRLLTD 86 (97)
T ss_dssp EEEEEEE---CCHHHHHHHHHHHHHTTCCEECCSCCCCSSSCCSSSSCEEEEEEGGGHHHHHHHHHH
T ss_pred ceeeeec---CCHHHHHHHHHHHHhCCCCEEEcCCcchhhcCccccCcEEEEEChhhHHHHHHHHHH
Confidence 3455432 4666777777888889999988665443 222 4488999999999988866
No 114
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=21.08 E-value=1.4e+02 Score=24.11 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=30.2
Q ss_pred EEeeccCccccCCCCC-CCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecC
Q 020388 143 TIWTDVDGVYSADPRK-VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205 (327)
Q Consensus 143 ~~~tDV~Gi~t~dP~~-~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~ 205 (327)
.+..|+||.++..-.. .++.+.+..++..+. .+++.+++.|+++.|.++.
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~-------------~~L~~Lk~~Gi~~~I~Tg~ 61 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDA-------------IGISLLKKSGIEVRLISER 61 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHH-------------HHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcH-------------HHHHHHHHCCCEEEEEeCc
Confidence 5789999999864221 223344444444433 2567777778887766544
No 115
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=20.73 E-value=92 Score=21.59 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=36.6
Q ss_pred CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCC
Q 020388 253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAG 311 (327)
Q Consensus 253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~ 311 (327)
.+|..+..+..-|...||...+...+ +..+ +.+.++.....++.+.+.|..+....
T Consensus 10 ~~~r~aqaf~dyL~~~~I~~~v~~~~--~~~~-Lwl~d~~~~~~a~~el~~F~~~P~~~ 65 (70)
T 2gqc_A 10 PLSVDLAGFVGLLRRLNVPHRVSEES--GQQV-LWVPDERLAEQVRELYRRYPEGDPQA 65 (70)
T ss_dssp CTTTTGGGHHHHHHTTTCCSEEEEET--TEEE-EECCCSSHHHHHHHHHTTSSSTTTTS
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEECC--CceE-EEEcCHHHHHHHHHHHHHHHhCCCcc
Confidence 46777888999999999998887643 3444 55666555455555555575544333
No 116
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=20.58 E-value=2.7e+02 Score=24.62 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCceeEEcccceeeccCCCCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (327)
Q Consensus 49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD 127 (327)
+-++.++.+.|++...+.+.. |+ ...+.++-.+.++...+...+.+||+.|- +.+ .+ .|
T Consensus 24 ~~lv~~li~~Gv~gl~~~Gtt---------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv-g~~----~t------~~ 83 (294)
T 2ehh_A 24 GNLIEFHVDNGTDAILVCGTT---------GESPTLTFEEHEKVIEFAVKRAAGRIKVIAGT-GGN----AT------HE 83 (294)
T ss_dssp HHHHHHHHTTTCCEEEESSTT---------TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC-CCS----CH------HH
T ss_pred HHHHHHHHHCCCCEEEECccc---------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEec-CCC----CH------HH
Confidence 345777788999887665432 11 23444455556666665445789999773 211 11 13
Q ss_pred HH-HHHHHHHhCCceEEEee
Q 020388 128 FS-AAIMGALLRAHQVTIWT 146 (327)
Q Consensus 128 ~~-A~~lA~~l~A~~l~~~t 146 (327)
.. -+..|+.+||+.+.+.+
T Consensus 84 ai~la~~A~~~Gadavlv~~ 103 (294)
T 2ehh_A 84 AVHLTAHAKEVGADGALVVV 103 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 32 35667888998877664
No 117
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.05 E-value=3.3e+02 Score=24.21 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCceeEEcccceeeccCCCCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (327)
Q Consensus 49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD 127 (327)
+-++.++.+.|++...+.+.. |+ .....++-.+.++...+...+.+||+.|- +.+ .+ .|
T Consensus 40 ~~lv~~li~~Gv~gl~v~Gtt---------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv-g~~----st------~~ 99 (304)
T 3cpr_A 40 REVAAYLVDKGLDSLVLAGTT---------GESPTTTAAEKLELLKAVREEVGDRAKLIAGV-GTN----NT------RT 99 (304)
T ss_dssp HHHHHHHHHTTCCEEEESSTT---------TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEEC-CCS----CH------HH
T ss_pred HHHHHHHHHcCCCEEEECccc---------cChhhCCHHHHHHHHHHHHHHhCCCCcEEecC-CCC----CH------HH
Confidence 345777788899887665432 12 23444455556666665445789999773 211 11 13
Q ss_pred HH-HHHHHHHhCCceEEEee
Q 020388 128 FS-AAIMGALLRAHQVTIWT 146 (327)
Q Consensus 128 ~~-A~~lA~~l~A~~l~~~t 146 (327)
.. -+..|+.+||+.+.+.+
T Consensus 100 ai~la~~A~~~Gadavlv~~ 119 (304)
T 3cpr_A 100 SVELAEAAASAGADGLLVVT 119 (304)
T ss_dssp HHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 32 45667888998877664
No 118
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=20.05 E-value=2.6e+02 Score=24.92 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCceeEEcccceeeccCCCCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (327)
Q Consensus 49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD 127 (327)
+-++.++.+.|++...+.+.. |+ ...+.++-.+.++...+...+.+||+.|- +.+ .+ .|
T Consensus 36 ~~lv~~li~~Gv~gl~v~GtT---------GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGv-g~~----~t------~~ 95 (301)
T 1xky_A 36 TKLVNYLIDNGTTAIVVGGTT---------GESPTLTSEEKVALYRHVVSVVDKRVPVIAGT-GSN----NT------HA 95 (301)
T ss_dssp HHHHHHHHHTTCCEEEESSTT---------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-CCS----CH------HH
T ss_pred HHHHHHHHHcCCCEEEECccc---------cChhhCCHHHHHHHHHHHHHHhCCCceEEeCC-CCC----CH------HH
Confidence 345777788899887665431 11 23444455566666665445789999773 211 11 13
Q ss_pred HH-HHHHHHHhCCceEEEee
Q 020388 128 FS-AAIMGALLRAHQVTIWT 146 (327)
Q Consensus 128 ~~-A~~lA~~l~A~~l~~~t 146 (327)
.. .+..|+.+||+.+.+.+
T Consensus 96 ai~la~~A~~~Gadavlv~~ 115 (301)
T 1xky_A 96 SIDLTKKATEVGVDAVMLVA 115 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEcC
Confidence 22 35667888998877665
No 119
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=20.02 E-value=2.9e+02 Score=25.52 Aligned_cols=77 Identities=12% Similarity=0.019 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCceeEEcccceeeccCCCCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchH
Q 020388 50 MLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDF 128 (327)
Q Consensus 50 l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~ 128 (327)
-++.++.+.|++...+.+.. |+ .....++-.+.++...+...+.+||+.|- +.+ .+ .|.
T Consensus 84 ~lv~~li~~Gv~Gl~v~GTT---------GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGv-g~~----st------~ea 143 (360)
T 4dpp_A 84 DLVNIQIQNGAEGVIVGGTT---------GEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNT-GSN----ST------REA 143 (360)
T ss_dssp HHHHHHHHTTCCEEEESSTT---------TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-CCS----SH------HHH
T ss_pred HHHHHHHHcCCCEEEecccc---------cChhhCCHHHHHHHHHHHHHHhCCCCeEEEec-CCC----CH------HHH
Confidence 44667778888876664421 11 23344444455666555446789999773 211 11 122
Q ss_pred H-HHHHHHHhCCceEEEee
Q 020388 129 S-AAIMGALLRAHQVTIWT 146 (327)
Q Consensus 129 ~-A~~lA~~l~A~~l~~~t 146 (327)
. .+.-|+.+||+.+.+.+
T Consensus 144 i~la~~A~~~Gadavlvv~ 162 (360)
T 4dpp_A 144 IHATEQGFAVGMHAALHIN 162 (360)
T ss_dssp HHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 2 35667778998887764
Done!