BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020389
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 159/304 (52%), Positives = 203/304 (66%), Gaps = 28/304 (9%)
Query: 7 NPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSR 66
NP++ L P M+LPG +ATT + T+S EDP+KK+RKPYTITKSR
Sbjct: 5 NPSQAHCL-PMKMSLPGFNTLPHTATT--IPVSIRSNRTMSFFEDPTKKVRKPYTITKSR 61
Query: 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPP 126
E+WTE EHDKFLEAL LFDRDWKKI+AF+GSKTVIQIRSHAQKYFLKVQKNGT EHLPPP
Sbjct: 62 ENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPPP 121
Query: 127 RPKRKAAHPYPQKASKNAPMLSQVSGSFQSSSAQLEPGHFLRPDSSSMLMIPMASAATSW 186
RPKRKA HPYPQKA K + SS+A + + +S ++ +T+
Sbjct: 122 RPKRKANHPYPQKAPK---------FTLSSSNALFQHDYLYNTNSHPVI-------STTR 165
Query: 187 TNNVQTVSLS-PASKGPE---VANNRSNSTDSTPKARVSGELTDQGGELTDQGNNSHPLR 242
+ + +S P+S E V+ N +++ S K R T E DQ + P R
Sbjct: 166 KHGLVHCDVSIPSSVIKEEFGVSENCCSTSSSRDKQR-----TRIVTETNDQESCGKPHR 220
Query: 243 VLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHRRL 302
V P+FA+VY FIGSVFDP + HV++LK+MDPI++ETVLLLM+NLS+NLTSP+F++ R+L
Sbjct: 221 VAPNFAEVYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKL 280
Query: 303 LSSY 306
+SSY
Sbjct: 281 ISSY 284
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 143/252 (56%), Gaps = 13/252 (5%)
Query: 53 SKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFL 112
S K RKPYTI+K RE+WT+ EH KFLEAL LFDRDWKKIE+F+GSKTVIQIRSHAQKYF+
Sbjct: 28 SLKSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFI 87
Query: 113 KVQKNGTAEHLPPPRPKRKAAHPYPQKASKNAPMLSQVSGSFQSSSAQLEPGHFLRPDSS 172
KVQKN T E +PPPRPKRK+ PYPQK + G+F S L HF+ S
Sbjct: 88 KVQKNNTGERIPPPRPKRKSIQPYPQKQKHDG------MGAFIPDS--LSGNHFISSSSF 139
Query: 173 SMLMIPMASAATSWTNNVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGGELT 232
+ M N+ ++P+ ++ + + GG
Sbjct: 140 ATWMTYRGLMP-----NISESQINPSDLQKQLEQLQQAQQYIQQAVTTAQSSQRNGGLPP 194
Query: 233 DQGNNSHPLRVLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVLLLMRNLSINLT 292
+ +N+ + P+F ++Y F+ ++F+ N + + L + ID ET+ +LM NL+INL
Sbjct: 195 NPSSNNGGTTLTPNFPKIYAFLSNLFESNGTSFTEALSDLSMIDRETMQILMHNLAINLA 254
Query: 293 SPDFEDHRRLLS 304
+ + D+ + LS
Sbjct: 255 NQQYRDNHQTLS 266
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 75/119 (63%), Gaps = 10/119 (8%)
Query: 45 TVSTSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIR 104
T ++ E+ K RKPYTITK RE WTE EH++FLEAL+L+ R W++IE IG+KT +QIR
Sbjct: 3 TNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIR 62
Query: 105 SHAQKYFLKVQKNGTAEHLPPPRP----------KRKAAHPYPQKASKNAPMLSQVSGS 153
SHAQK+F K++K + +P + KRK PYP+K N SQVS +
Sbjct: 63 SHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSA 121
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%)
Query: 45 TVSTSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIR 104
T S+ ED K RKPYTITK RE WTE EH++F+EAL+L+ R W+KIE + +KT +QIR
Sbjct: 3 TNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIR 62
Query: 105 SHAQKYFLKVQKNGTAE 121
SHAQK+F KV+K A+
Sbjct: 63 SHAQKFFSKVEKEAEAK 79
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 43/54 (79%)
Query: 65 SRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118
+R SWT+ E F+EA +L+D+D KKI+ + +KT++Q+RSHAQK+ LK++KNG
Sbjct: 149 TRSSWTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKLEKNG 202
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKV-QKNG 118
W+ EH+ FL+A++ + R +WK I I S+ +QI++HA+ YF K+ Q+NG
Sbjct: 232 WSNEEHELFLKAIEKYGRGNWKLISTLIKSRNTLQIKNHARIYFDKISQQNG 283
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 63 TKSRESWTEPEHDKFLEALQLFDRD-WKKIEAFIGSKTVIQIRSHAQKYFLK 113
T ++ WT+ EH +FL +Q+ + WK+I F+G++T QI+SHAQKY+L+
Sbjct: 373 TSLKQGWTKEEHIRFLNGIQIHGKGAWKEIAQFVGTRTPTQIQSHAQKYYLR 424
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPRP 128
WT E + F + L F R W KI IGS+TV+Q++S+A++YF KN L P
Sbjct: 121 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYF----KNKVKCGLDKETP 176
Query: 129 KRKAAH 134
+K H
Sbjct: 177 NQKTGH 182
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 55 KIRKPYTITKSRES-WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111
K++KP + + ++ W E E + F + L F R W KI IG++TV+Q++S+A++YF
Sbjct: 87 KVKKPLVKSSAAQTRWAEEEKELFEKGLAQFGRRWTKIAKLIGTRTVLQVKSYAKQYF 144
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 64 KSRESWTEPEHDKFLEALQLF-DRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116
K WT EH +F+EAL + +D K I ++ ++ Q+R+HAQKYFL++ +
Sbjct: 170 KQSRYWTPEEHSRFIEALSKYGHKDVKSISQYVSTRNPTQVRTHAQKYFLRIDR 223
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAE 121
WT E + F + L + R W KI IGS+TV+Q++S+A++YF KN +E
Sbjct: 122 WTSEEKELFEQGLVKYGRRWTKIAKLIGSRTVLQVKSYARQYFKNKAKNDGSE 174
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 54 KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111
K++R P + S WT+ E + F + L F R W I IGS++V+Q++++A+ YF
Sbjct: 97 KRVRSPAKASSSPVKWTKEEKNLFEQGLATFGRRWTSIARLIGSRSVLQVKNYARHYF 154
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 69 WTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTA 120
WT EH+KFLEA+Q F +D+ I F+ ++ Q+R+H Y LK QK A
Sbjct: 657 WTSEEHNKFLEAVQQFGIKDYHAIAKFVQTRNHHQVRTHVNTY-LKNQKKAEA 708
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 47 STSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDR-DWKKI-EAFIGSKTVIQIR 104
S+S PS++ RK WTE EH FL L+ + + DW+ I F+ ++T Q+
Sbjct: 118 SSSGRPSEQERKKGV------PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVA 171
Query: 105 SHAQKYFLKVQKNG 118
SHAQKYF++ G
Sbjct: 172 SHAQKYFIRQLSGG 185
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKI-EAFIGSKTVIQIRSHAQKYF 111
WTE EH FL LQ + DW+ I F+ ++T Q+ SHAQKYF
Sbjct: 97 WTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 141
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111
WT E + F + L F R W KI + S+TV+Q++S+A++YF
Sbjct: 118 WTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKSYARQYF 160
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 69 WTEPEHDKFLEAL------QLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118
WT E K + L ++ R W+KI +G++T Q+ S QKYF+K+ K G
Sbjct: 662 WTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAG 717
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 69 WTEPEHDKFLEAL------QLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118
WT E K + L ++ R W+KI +G++T Q+ S QKYF+K+ K G
Sbjct: 655 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAG 710
>sp|Q9UKL0|RCOR1_HUMAN REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=1
Length = 482
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 57 RKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110
R P I K WT E ++A++ + RD++ I IG+K+V+Q+++ Y
Sbjct: 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424
>sp|Q8CFE3|RCOR1_MOUSE REST corepressor 1 OS=Mus musculus GN=Rcor1 PE=1 SV=2
Length = 477
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 57 RKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110
R P I K WT E ++A++ + RD++ I IG+K+V+Q+++ Y
Sbjct: 365 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 418
>sp|Q54YB7|MYBF_DICDI Myb-like protein F OS=Dictyostelium discoideum GN=mybF PE=3 SV=1
Length = 564
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116
R WT E + + E + ++WKKI+ K+ Q+ SH Q Y +K+ K
Sbjct: 414 RTVWTLEEEELYKEVFNHYGKNWKKIKTHFPDKSKSQVTSHGQ-YLIKINK 463
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 15 DPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEH 74
D NG G + +T T+ A + P KK++ + + E+W++ +
Sbjct: 476 DENGDKNDNGGKMNNEVSTSTSMTGDANLLEEGETSRPLKKVK---ILEQIDENWSKEDL 532
Query: 75 DKFLEALQLFDRDWKKIEAFIGSKT 99
K L+ +Q F DW K+ +G+K+
Sbjct: 533 QKLLKGIQEFGADWYKVAKNVGNKS 557
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114
++WT+ E LEA++L++ +W +I +GSK+ Q H FL++
Sbjct: 401 DNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILH----FLRL 444
>sp|Q54K19|MYBD_DICDI Myb-like protein D OS=Dictyostelium discoideum GN=mybD PE=3 SV=1
Length = 595
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAE--HLPPP 126
WT+ E +K + + + WK I + KT Q++SH Q Y +++ G E H
Sbjct: 443 WTQEEDEKMAQLYNKYGKSWKAIHSHFDDKTREQVQSHGQ-YLIRI---GKLEDIHRDGR 498
Query: 127 RPKRKAAHPYPQKASK 142
+ +RK ++ +
Sbjct: 499 KERRKGKQALQERQQQ 514
>sp|Q8IZ40|RCOR2_HUMAN REST corepressor 2 OS=Homo sapiens GN=RCOR2 PE=1 SV=2
Length = 523
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 7 NPAEGFYLDPNGMA------------LPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSK 54
P +G YL P G+ L GL S + +S E
Sbjct: 258 RPPKGMYLSPEGLTAVSGSPDLANLTLRGLDSQLISLKRQVQSMKQTNSSLRQALEGGID 317
Query: 55 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114
+R P TK WT E ++A++ + +D+ I IG+KT+ Q+++ +F+
Sbjct: 318 PLRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSY 373
Query: 115 QKNGTAEHL 123
++ E +
Sbjct: 374 RRRFNLEEV 382
>sp|Q5FWT8|RCOR2_RAT REST corepressor 2 OS=Rattus norvegicus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 7 NPAEGFYLDPNGMA------------LPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSK 54
P +G YL P G+ L GL S + +S E
Sbjct: 258 RPPKGMYLSPEGLTAVSGSPDLANLTLRGLDSQLISLKRQVQSMKQTNSSLRQALEGGID 317
Query: 55 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114
+R P TK WT E ++A++ + +D+ I IG+KT+ Q+++ +F+
Sbjct: 318 PLRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSY 373
Query: 115 QKNGTAEHL 123
++ E +
Sbjct: 374 RRRFNLEEV 382
>sp|Q8C796|RCOR2_MOUSE REST corepressor 2 OS=Mus musculus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 7 NPAEGFYLDPNGMA------------LPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSK 54
P +G YL P G+ L GL S + +S E
Sbjct: 258 RPPKGMYLSPEGLTAVSGSPDLANLTLRGLDSQLISLKRQVQSMKQTNSSLRQALEGGID 317
Query: 55 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114
+R P TK WT E ++A++ + +D+ I IG+KT+ Q+++ +F+
Sbjct: 318 PLRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSY 373
Query: 115 QKNGTAEHL 123
++ E +
Sbjct: 374 RRRFNLEEV 382
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKT 99
W++ E ++F E + F ++WKK+ F+ S++
Sbjct: 47 WSKEELERFYEGYRKFGKEWKKVAGFVHSRS 77
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1
PE=1 SV=2
Length = 743
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 23 GLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQ 82
G G ++ + P ++A ++S ++ P+KK T+ +WT E + F AL+
Sbjct: 22 GEGRLSNQNSNPNLLSSA----SISITQFPAKKP------TRQWAAWTHQEEESFFTALR 71
Query: 83 LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116
++++KI + + SK Q+R + + ++ K
Sbjct: 72 QVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNK 105
>sp|Q90WN5|RCOR1_XENLA REST corepressor 1 OS=Xenopus laevis GN=rcor1 PE=2 SV=1
Length = 431
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110
WT E ++A++++ RD++ I IG+K+V+Q+++ Y
Sbjct: 332 WTTEEQLLAVQAIRMYGRDFQAISDVIGNKSVVQVKNFFVNY 373
>sp|Q811B3|ATS12_MOUSE A disintegrin and metalloproteinase with thrombospondin motifs 12
OS=Mus musculus GN=Adamts12 PE=1 SV=2
Length = 1600
Score = 33.1 bits (74), Expect = 2.6, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 29/129 (22%)
Query: 115 QKNGTAEH-----LPPP--RPKRKAAHPYPQKASKNAPMLSQVSGS-----------FQS 156
+ TAEH +P P RP + P+ S + P ++ + + +Q+
Sbjct: 1018 KNQSTAEHDPFKPIPAPTSRPTPLSTPTVPESMSTSTPTINSLGSTIASQEDANGMGWQN 1077
Query: 157 SSAQLEPGHFLRPDSSSMLMIPMASAATSWT-------NNVQTVSLSPASKGPEVANNRS 209
+S Q E G S S +P+ TSW+ NV + ++ P S+G A S
Sbjct: 1078 NSTQAEEGSHFPTSSGSTSQVPV----TSWSLSIQPDDENVSSSAIGPTSEGDFWATTTS 1133
Query: 210 NSTDSTPKA 218
+S S+ A
Sbjct: 1134 DSGLSSSDA 1142
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 69 WTEPEHDKFLEALQLFDRD----WKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAE--H 122
WT ++ F +AL +D+D W+ + +G KT +++ H Y L VQ + E H
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRH---YELLVQDINSIENGH 70
Query: 123 LPPP 126
+P P
Sbjct: 71 VPFP 74
>sp|O24731|THSA_THEK8 Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA
PE=3 SV=1
Length = 549
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 197 PASKG-PEVA--NNRSNSTDSTPKARVSGELTDQGGELTDQGNNSHPLRVLPDFAQVYTF 253
PA+K EVA ++ +T ++GEL + EL DQ N HP ++ +A
Sbjct: 77 PAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQ--NIHPSIIIKGYALAAEK 134
Query: 254 IGSVFDPNASDHVQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHRRLLSSYEID 309
+ + A K++P D ET L+R ++T + E H+ LL+ +D
Sbjct: 135 AQEILEEIAI-------KVNPDDEET---LLRIAMTSITGKNAESHKELLAKLAVD 180
>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2
Length = 2525
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIR 104
WTE E + + L R+W I +GSKTV Q +
Sbjct: 615 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCK 650
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 16 PNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEHD 75
P+ +A+ P + +T A+ A + + +I + KSR +WT H
Sbjct: 150 PSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHR 209
Query: 76 KFLEALQLFDRDW---KKIEAFIGSK--TVIQIRSHAQKYFLKVQK 116
+F+ A+ D KKI + K T Q+ SH QKY ++++K
Sbjct: 210 QFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 16 PNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEHD 75
P+ +A+ P + +T A+ A + + +I + KSR +WT H
Sbjct: 150 PSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHR 209
Query: 76 KFLEALQLFDRDW---KKIEAFIGSK--TVIQIRSHAQKYFLKVQK 116
+F+ A+ D KKI + K T Q+ SH QKY ++++K
Sbjct: 210 QFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 41 AGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKK-----IEAF- 94
G + + KK RKP R +WTE H KFLEA+++ K +E
Sbjct: 198 GGNGIQNMEKKQGKKPRKP------RMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQ 251
Query: 95 ---IGSKTVIQIRSHAQKYFLKVQKN 117
I T + SH QK+ + +++N
Sbjct: 252 EMRIEGITRSNVASHLQKHRINLEEN 277
>sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3
Length = 2472
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIR 104
WTE E + + L R+W I +GSKTV Q +
Sbjct: 611 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCK 646
>sp|O62541|HUNB_DROYA Protein hunchback OS=Drosophila yakuba GN=hb PE=3 SV=1
Length = 759
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 5 IPNPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITK 64
+PNP + FY G P P +SA+T A A G+S + P + P + K
Sbjct: 136 LPNPMQHFY---GGNLRPSPQPTPTSASTVAPVAVATGSSEKLQALTPPMDVTPPKSPAK 192
Query: 65 SRESWTEP--EHDKF 77
S +S EP EHD+
Sbjct: 193 SSQSNIEPEKEHDQM 207
>sp|O62538|HUNB_DROSE Protein hunchback OS=Drosophila sechellia GN=hb PE=3 SV=1
Length = 757
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 5 IPNPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITK 64
+PNP + FY G P P +SA+T A A G+S + P + P + K
Sbjct: 134 LPNPMQHFY---GGNLRPSPQPTPTSASTIAPVAVATGSSEKLQALTPPMDVTPPKSPAK 190
Query: 65 SRESWTEP--EHDKF 77
S +S EP EHD+
Sbjct: 191 SSQSNIEPEKEHDQM 205
>sp|O62537|HUNB_DROOR Protein hunchback OS=Drosophila orena GN=hb PE=3 SV=1
Length = 767
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 5 IPNPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITK 64
+PNP + FY G P P SA+T + A A G+S + P + P + K
Sbjct: 137 LPNPMQHFY---GGNLRPSPQPTPISASTVASVAVATGSSEKLQALTPPMDVTPPKSPAK 193
Query: 65 SRESWTEP--EHDKF 77
S +S EP EHD+
Sbjct: 194 SSQSNIEPEKEHDQM 208
>sp|P05084|HUNB_DROME Protein hunchback OS=Drosophila melanogaster GN=hb PE=1 SV=2
Length = 758
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 5 IPNPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITK 64
+PNP + FY G P P +SA+T A A G+S + P + P + K
Sbjct: 135 LPNPMQHFY---GGNLRPSPQPTPTSASTIAPVAVATGSSEKLQALTPPMDVTPPKSPAK 191
Query: 65 SRESWTEP--EHDKF 77
S +S EP EHD+
Sbjct: 192 SSQSNIEPEKEHDQM 206
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 17/105 (16%)
Query: 29 SSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTI------------TKSRESWTEPEHDK 76
S+ + T + S VST+ + RKP K + WT P D
Sbjct: 178 CSSKSDTRTVNSTNVSHVSTNGSRKNRKRKPKGGPSDDGESLSQPPKKKKIWWTNPLQDL 237
Query: 77 FLEALQLFDRDW---KKIEAFIGSKTVIQ--IRSHAQKYFLKVQK 116
FL+A+Q D KKI A + + + + SH QKY L V++
Sbjct: 238 FLQAIQHIGYDKVVPKKILAIMNVPYLTRENVASHLQKYRLFVKR 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,203,577
Number of Sequences: 539616
Number of extensions: 5122553
Number of successful extensions: 17100
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 16923
Number of HSP's gapped (non-prelim): 247
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)