Query 020389
Match_columns 327
No_of_seqs 224 out of 702
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 16:08:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.6 1.6E-16 5.6E-21 124.3 5.8 60 52-111 4-63 (79)
2 2cu7_A KIAA1915 protein; nucle 99.6 1.3E-15 4.4E-20 115.9 8.8 56 63-118 6-61 (72)
3 2yum_A ZZZ3 protein, zinc fing 99.6 1.7E-15 5.9E-20 115.4 6.7 56 63-118 5-66 (75)
4 2elk_A SPCC24B10.08C protein; 99.5 6.4E-14 2.2E-18 102.9 6.1 48 65-112 8-57 (58)
5 2iw5_B Protein corest, REST co 99.5 3.4E-14 1.2E-18 131.0 5.4 66 50-115 117-182 (235)
6 1x41_A Transcriptional adaptor 99.4 1.2E-13 4E-18 101.9 6.3 49 64-112 6-55 (60)
7 2xag_B REST corepressor 1; ami 99.3 6.1E-13 2.1E-17 133.3 5.4 66 50-115 364-429 (482)
8 1guu_A C-MYB, MYB proto-oncoge 99.3 1.9E-12 6.5E-17 92.1 6.4 47 65-111 2-49 (52)
9 2cjj_A Radialis; plant develop 99.3 2.5E-12 8.7E-17 103.7 6.8 64 66-130 8-75 (93)
10 2cqr_A RSGI RUH-043, DNAJ homo 99.3 7.2E-12 2.5E-16 97.0 8.3 49 64-112 16-68 (73)
11 2d9a_A B-MYB, MYB-related prot 99.3 3.3E-12 1.1E-16 93.5 5.7 49 63-111 5-54 (60)
12 1gvd_A MYB proto-oncogene prot 99.3 4.1E-12 1.4E-16 90.5 5.6 47 65-111 2-49 (52)
13 2eqr_A N-COR1, N-COR, nuclear 99.3 8.7E-12 3E-16 92.5 6.8 44 64-107 10-53 (61)
14 2din_A Cell division cycle 5-l 99.2 1.4E-11 4.9E-16 91.8 7.3 55 63-118 6-60 (66)
15 2ltp_A Nuclear receptor corepr 98.9 9.9E-13 3.4E-17 104.3 0.0 55 62-116 12-66 (89)
16 2dim_A Cell division cycle 5-l 99.2 2E-11 7E-16 91.9 5.8 49 63-111 6-55 (70)
17 1w0t_A Telomeric repeat bindin 99.2 4.1E-11 1.4E-15 86.0 6.7 46 66-111 2-50 (53)
18 2cqq_A RSGI RUH-037, DNAJ homo 99.2 5E-11 1.7E-15 92.0 7.5 60 66-128 8-71 (72)
19 1ity_A TRF1; helix-turn-helix, 99.2 6E-11 2.1E-15 89.3 7.3 51 63-113 7-60 (69)
20 2yqk_A Arginine-glutamic acid 99.1 9.9E-11 3.4E-15 87.7 6.5 43 65-107 8-51 (63)
21 1irz_A ARR10-B; helix-turn-hel 99.1 1.6E-10 5.3E-15 88.2 7.4 55 63-117 4-63 (64)
22 3sjm_A Telomeric repeat-bindin 99.1 1.7E-10 5.7E-15 86.8 6.8 47 65-111 10-59 (64)
23 2k9n_A MYB24; R2R3 domain, DNA 99.1 2.4E-10 8.1E-15 92.1 7.8 54 64-117 51-104 (107)
24 3osg_A MYB21; transcription-DN 99.0 3.7E-10 1.3E-14 93.5 6.6 52 63-114 59-110 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 99.0 3.2E-10 1.1E-14 90.4 5.6 49 63-111 53-101 (105)
26 1wgx_A KIAA1903 protein; MYB D 99.0 4.8E-10 1.6E-14 87.3 6.3 45 66-110 8-56 (73)
27 2llk_A Cyclin-D-binding MYB-li 99.0 5.7E-10 1.9E-14 86.5 6.0 52 56-108 13-64 (73)
28 3osg_A MYB21; transcription-DN 99.0 6.4E-10 2.2E-14 92.1 6.4 49 63-111 8-56 (126)
29 3zqc_A MYB3; transcription-DNA 99.0 5.7E-10 1.9E-14 92.8 6.0 52 63-114 51-102 (131)
30 2crg_A Metastasis associated p 98.9 1E-09 3.5E-14 83.9 6.1 44 64-107 6-50 (70)
31 1gv2_A C-MYB, MYB proto-oncoge 98.9 1.1E-09 3.7E-14 87.4 5.6 47 65-111 3-50 (105)
32 2k9n_A MYB24; R2R3 domain, DNA 98.9 1.8E-09 6.2E-14 87.0 5.8 45 67-111 2-47 (107)
33 1h8a_C AMV V-MYB, MYB transfor 98.9 1.1E-09 3.8E-14 90.4 4.4 47 64-110 77-123 (128)
34 3zqc_A MYB3; transcription-DNA 98.9 1.8E-09 6.1E-14 89.8 5.3 46 66-111 2-48 (131)
35 1h8a_C AMV V-MYB, MYB transfor 98.9 2.4E-09 8.3E-14 88.4 6.0 50 62-111 23-73 (128)
36 4a69_C Nuclear receptor corepr 98.8 7E-09 2.4E-13 83.4 5.8 44 64-107 41-84 (94)
37 4eef_G F-HB80.4, designed hema 98.8 7E-10 2.4E-14 86.8 -0.1 43 66-108 20-66 (74)
38 2ckx_A NGTRF1, telomere bindin 98.7 1.7E-08 6E-13 79.7 6.7 48 67-114 1-53 (83)
39 1h89_C C-MYB, MYB proto-oncoge 98.7 6.8E-09 2.3E-13 88.4 4.0 48 63-110 107-154 (159)
40 1h89_C C-MYB, MYB proto-oncoge 98.7 1.9E-08 6.3E-13 85.7 5.9 49 63-111 55-104 (159)
41 2aje_A Telomere repeat-binding 98.6 3.9E-08 1.3E-12 81.0 6.4 53 62-114 9-66 (105)
42 2juh_A Telomere binding protei 98.6 4.8E-08 1.6E-12 82.4 7.0 57 58-114 9-70 (121)
43 2roh_A RTBP1, telomere binding 98.6 1.1E-07 3.7E-12 80.3 8.8 54 61-114 26-84 (122)
44 1x58_A Hypothetical protein 49 98.6 5.8E-08 2E-12 73.7 6.3 45 64-108 6-53 (62)
45 1ign_A Protein (RAP1); RAP1,ye 98.3 3.3E-07 1.1E-11 85.3 3.9 50 64-113 6-61 (246)
46 1ofc_X ISWI protein; nuclear p 97.5 0.00011 3.7E-09 70.2 6.1 49 67-115 111-160 (304)
47 3hm5_A DNA methyltransferase 1 97.5 0.00024 8.3E-09 57.5 7.2 53 65-117 29-86 (93)
48 1ug2_A 2610100B20RIK gene prod 97.2 0.0038 1.3E-07 50.8 10.5 52 66-117 33-87 (95)
49 2xag_B REST corepressor 1; ami 97.1 6.5E-05 2.2E-09 75.6 0.0 42 66-107 189-230 (482)
50 1fex_A TRF2-interacting telome 97.1 0.00056 1.9E-08 50.6 5.0 46 66-111 2-57 (59)
51 4iej_A DNA methyltransferase 1 96.3 0.0076 2.6E-07 48.9 6.4 53 65-117 29-86 (93)
52 4b4c_A Chromodomain-helicase-D 96.1 0.0087 3E-07 52.3 6.1 52 65-116 6-62 (211)
53 2y9y_A Imitation switch protei 95.9 0.0081 2.8E-07 58.9 5.7 48 67-114 124-173 (374)
54 1ofc_X ISWI protein; nuclear p 95.9 0.013 4.3E-07 56.0 6.7 53 65-117 211-279 (304)
55 2ebi_A DNA binding protein GT- 95.8 0.012 4.1E-07 45.3 5.1 50 65-114 3-66 (86)
56 2lr8_A CAsp8-associated protei 94.5 0.0023 8E-08 49.6 0.0 47 67-114 15-64 (70)
57 1ig6_A MRF-2, modulator recogn 92.5 0.13 4.6E-06 41.1 4.5 55 76-130 37-107 (107)
58 4b4c_A Chromodomain-helicase-D 91.5 0.59 2E-05 40.6 7.8 48 65-113 133-195 (211)
59 2xb0_X Chromo domain-containin 87.1 1.3 4.3E-05 41.6 6.9 46 66-111 3-53 (270)
60 2hzd_A Transcriptional enhance 86.9 0.51 1.8E-05 37.4 3.6 47 64-110 4-71 (82)
61 1ign_A Protein (RAP1); RAP1,ye 84.7 1.5 5.1E-05 41.0 6.0 28 87-114 173-200 (246)
62 2cxy_A BAF250B subunit, HBAF25 80.2 1.9 6.4E-05 35.5 4.4 31 86-116 73-107 (125)
63 2y9y_A Imitation switch protei 80.1 4.6 0.00016 39.6 7.9 54 65-118 227-296 (374)
64 2xb0_X Chromo domain-containin 74.0 2.8 9.5E-05 39.3 4.3 27 66-92 168-195 (270)
65 2lm1_A Lysine-specific demethy 66.9 11 0.00038 29.7 5.7 31 86-116 66-100 (107)
66 2li6_A SWI/SNF chromatin-remod 66.8 5.1 0.00017 32.4 3.8 30 86-115 71-100 (116)
67 2jrz_A Histone demethylase jar 60.9 11 0.00036 30.6 4.7 41 76-116 44-96 (117)
68 1kkx_A Transcription regulator 59.5 9.9 0.00034 31.3 4.3 31 86-116 70-100 (123)
69 2eqy_A RBP2 like, jumonji, at 57.4 16 0.00054 29.9 5.2 40 77-116 47-98 (122)
70 2o8x_A Probable RNA polymerase 52.6 41 0.0014 23.0 6.1 48 67-116 14-61 (70)
71 1c20_A DEAD ringer protein; DN 49.9 19 0.00063 29.5 4.5 31 86-116 74-109 (128)
72 2jxj_A Histone demethylase jar 49.6 16 0.00054 28.2 3.8 31 86-116 58-92 (96)
73 1fse_A GERE; helix-turn-helix 47.7 49 0.0017 22.8 5.9 48 66-116 9-56 (74)
74 2rq5_A Protein jumonji; develo 45.1 21 0.00072 29.5 4.0 31 86-116 64-99 (121)
75 1x3u_A Transcriptional regulat 43.3 38 0.0013 23.8 4.8 45 68-115 16-60 (79)
76 3c57_A Two component transcrip 43.2 72 0.0024 24.0 6.6 48 67-117 26-73 (95)
77 3e7l_A Transcriptional regulat 42.6 38 0.0013 23.9 4.6 27 71-97 18-44 (63)
78 2kk0_A AT-rich interactive dom 40.7 23 0.00079 29.8 3.7 31 86-116 86-121 (145)
79 1je8_A Nitrate/nitrite respons 39.5 49 0.0017 24.3 5.0 47 66-115 19-65 (82)
80 3ulq_B Transcriptional regulat 35.3 71 0.0024 24.2 5.5 48 65-115 26-73 (90)
81 1ntc_A Protein (nitrogen regul 33.1 67 0.0023 24.3 5.0 29 69-97 48-76 (91)
82 3mzy_A RNA polymerase sigma-H 33.0 84 0.0029 24.1 5.7 33 83-116 122-154 (164)
83 2kz2_A Calmodulin, CAM; TR2C, 32.0 1.1E+02 0.0036 22.4 5.8 33 275-310 46-78 (94)
84 1ku3_A Sigma factor SIGA; heli 28.0 1.2E+02 0.0042 21.2 5.4 47 68-115 10-59 (73)
85 3i4p_A Transcriptional regulat 27.7 49 0.0017 27.1 3.6 42 72-118 3-45 (162)
86 2rnj_A Response regulator prot 27.5 79 0.0027 23.3 4.5 47 67-116 28-74 (91)
87 3i5g_C Myosin catalytic light 25.0 1.6E+02 0.0056 23.5 6.3 61 246-309 32-97 (159)
88 1p4w_A RCSB; solution structur 24.9 1.6E+02 0.0054 22.7 5.9 46 67-115 33-78 (99)
89 1ngr_A P75 low affinity neurot 23.6 53 0.0018 25.2 2.8 29 71-105 12-40 (85)
90 3hug_A RNA polymerase sigma fa 23.5 1.8E+02 0.006 21.4 5.7 32 84-116 52-83 (92)
91 1umq_A Photosynthetic apparatu 23.2 85 0.0029 24.0 3.9 29 69-97 38-66 (81)
92 2jt1_A PEFI protein; solution 21.9 1.2E+02 0.004 22.9 4.5 46 74-124 6-58 (77)
93 2yqf_A Ankyrin-1; death domain 20.8 1.4E+02 0.0048 23.4 4.9 35 70-105 14-48 (111)
94 2dbb_A Putative HTH-type trans 20.2 1.7E+02 0.0058 23.2 5.4 42 72-118 9-51 (151)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=124.28 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=56.2
Q ss_pred CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 52 PSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 52 ~~kk~rkPyt~tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
..++.++++.....+..||+||+++||+||++||++|++||++|++||..||+.||++|+
T Consensus 4 g~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 4 GSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp SSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred cccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 467888999999999999999999999999999999999999999999999999998763
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.62 E-value=1.3e-15 Score=115.89 Aligned_cols=56 Identities=39% Similarity=0.679 Sum_probs=52.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhhcC
Q 020389 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g 118 (327)
...++.||+||+++|++++++||.+|..||.+|++||..||+.||++||.+..+.+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g 61 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999999999999986654
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=115.43 Aligned_cols=56 Identities=36% Similarity=0.668 Sum_probs=51.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC------cchHhHHhhcCCCCHHHHHHHHHHHHHHHhhcC
Q 020389 63 TKSRESWTEPEHDKFLEALQLFD------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yG------rdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g 118 (327)
...++.||.||+++|+++|++|| ++|.+||++|++||..||+.||++||.++.+.|
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 34578999999999999999999 799999999999999999999999999886665
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=6.4e-14 Score=102.95 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-cchHhHHhhcC-CCCHHHHHHHHHHHHH
Q 020389 65 SRESWTEPEHDKFLEALQLFD-RDWKKIEAFIG-SKTVIQIRSHAQKYFL 112 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~Vg-TRT~~QVrSHAQKYf~ 112 (327)
.+..||.||+++|++++++|| ++|++||++|+ +||..|||.|+++||.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 467899999999999999999 79999999999 9999999999999985
No 5
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.46 E-value=3.4e-14 Score=131.03 Aligned_cols=66 Identities=26% Similarity=0.471 Sum_probs=61.0
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020389 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (327)
Q Consensus 50 ed~~kk~rkPyt~tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (327)
++...+.++|+.+.+....||+||+++|++||.+||+||..||++|++||..||++||.+|..++.
T Consensus 117 ~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 117 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp TTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred HhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence 456778899999999999999999999999999999999999999999999999999999877643
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=1.2e-13 Score=101.89 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=45.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-cchHhHHhhcCCCCHHHHHHHHHHHHH
Q 020389 64 KSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 112 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKYf~ 112 (327)
..+..||.||+++|++++++|| .+|++||++|++||..|||.|+++|+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4578999999999999999999 699999999999999999999998865
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.33 E-value=6.1e-13 Score=133.27 Aligned_cols=66 Identities=26% Similarity=0.471 Sum_probs=59.2
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020389 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (327)
Q Consensus 50 ed~~kk~rkPyt~tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (327)
+......+.|+.+++...+||+||+.+|++||.+|||||+.||++|||||..|||+||++|+.++.
T Consensus 364 ~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 364 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp TTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred hcccccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Confidence 344556678888889999999999999999999999999999999999999999999999877654
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.33 E-value=1.9e-12 Score=92.15 Aligned_cols=47 Identities=26% Similarity=0.507 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-chHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
+++.||.||+.+|++++++||. +|..||.+|++||..||+.|+++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998 9999999999999999999998885
No 9
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.31 E-value=2.5e-12 Score=103.74 Aligned_cols=64 Identities=17% Similarity=0.428 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC----cchHhHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 020389 66 RESWTEPEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPRPKR 130 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yG----rdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~~~~iP~pr~KR 130 (327)
.+.||.||+++|++||..|| .+|.+||++|++||..||+.||++++.++... ..+.+|.|.+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~i-esg~vp~P~y~~ 75 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI-ESGKVPFPNYRT 75 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH-HHSSCCC-----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCCCCCC
Confidence 46899999999999999997 58999999999999999999999998887654 356788887753
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.29 E-value=7.2e-12 Score=97.02 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=44.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC----cchHhHHhhcCCCCHHHHHHHHHHHHH
Q 020389 64 KSRESWTEPEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFL 112 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yG----rdWkkIA~~VgTRT~~QVrSHAQKYf~ 112 (327)
.....||.+|+.+|++||+.|| .+|.+||++|++||..||+.||+++..
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999 699999999999999999999887643
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=3.3e-12 Score=93.49 Aligned_cols=49 Identities=18% Similarity=0.410 Sum_probs=45.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-cchHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 63 TKSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
...++.||.||+++|++++++|| ++|..||.+|++||..||+.|+++|+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 34678999999999999999999 69999999999999999999998774
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.27 E-value=4.1e-12 Score=90.55 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-chHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
.++.||.||+.+|++++++||. +|..||.+|++||..||+.|+++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999996 8999999999999999999998874
No 13
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=8.7e-12 Score=92.50 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=41.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHH
Q 020389 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 107 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHA 107 (327)
+....||+||+++|++|+.+||++|.+||.+|++||..||+.|+
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 35689999999999999999999999999999999999999874
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=91.80 Aligned_cols=55 Identities=22% Similarity=0.461 Sum_probs=49.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhhcC
Q 020389 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g 118 (327)
...++.||.||+++|+++++.||.+|.+||.++ +||..|||.|+++|+....+.+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHHhChHhcCC
Confidence 456789999999999999999999999999955 5999999999999998876654
No 15
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.86 E-value=9.9e-13 Score=104.30 Aligned_cols=55 Identities=27% Similarity=0.366 Sum_probs=50.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 020389 62 ITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 62 ~tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (327)
+...++.||.||+++|+++++.||.+|..||.+|++||..||+.||.+|+.++..
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 3456789999999999999999999999999999999999999999999887654
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2e-11 Score=91.91 Aligned_cols=49 Identities=14% Similarity=0.414 Sum_probs=45.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-cchHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 63 TKSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
...++.||.||+++|++++++|| .+|..||.+|++||..|||.|+++|+
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 34678999999999999999999 79999999999999999999988774
No 17
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.18 E-value=4.1e-11 Score=85.98 Aligned_cols=46 Identities=15% Similarity=0.385 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC-cchHhHHhhcC--CCCHHHHHHHHHHHH
Q 020389 66 RESWTEPEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 111 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~Vg--TRT~~QVrSHAQKYf 111 (327)
++.||.||+++++++++.|| .+|..||.+++ +||..||+.++.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999 69999999999 999999999998775
No 18
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.17 E-value=5e-11 Score=92.01 Aligned_cols=60 Identities=18% Similarity=0.392 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC----cchHhHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 020389 66 RESWTEPEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPRP 128 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yG----rdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~~~~iP~pr~ 128 (327)
...||.||+++|.+||.+|+ .+|.+||+++ +||..||+.||+++...+ ....+.+|.|++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~--~~~~G~vp~P~~ 71 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV--TCSPGMVSGPSS 71 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC--CCCSCCCSCSCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc--CccCCCCCCCCC
Confidence 56899999999999999998 4899999999 599999999999886553 235788888764
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.16 E-value=6e-11 Score=89.25 Aligned_cols=51 Identities=14% Similarity=0.342 Sum_probs=46.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-cchHhHHhhcC--CCCHHHHHHHHHHHHHH
Q 020389 63 TKSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYFLK 113 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~Vg--TRT~~QVrSHAQKYf~k 113 (327)
.+.++.||.||+.+|++++++|| .+|..||.+++ +||..||+.++.+|+..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 35678999999999999999999 69999999999 99999999999888543
No 20
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=9.9e-11 Score=87.67 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcchHhHHh-hcCCCCHHHHHHHH
Q 020389 65 SRESWTEPEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 107 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGrdWkkIA~-~VgTRT~~QVrSHA 107 (327)
....||+||+++|++||.+||+||..|+. +|++||..||..|+
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence 45799999999999999999999999997 79999999998874
No 21
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.11 E-value=1.6e-10 Score=88.16 Aligned_cols=55 Identities=33% Similarity=0.445 Sum_probs=49.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCcc---hHhHHhhcC--CCCHHHHHHHHHHHHHHHhhc
Q 020389 63 TKSRESWTEPEHDKFLEALQLFDRD---WKKIEAFIG--SKTVIQIRSHAQKYFLKVQKN 117 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrd---WkkIA~~Vg--TRT~~QVrSHAQKYf~kl~k~ 117 (327)
.+.+-.||+|+|++|++|++.+|.+ |+.|-++++ +.|..||+||.|||+.++++.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4578899999999999999999964 899998866 679999999999999999763
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.09 E-value=1.7e-10 Score=86.79 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-cchHhHHhhcC--CCCHHHHHHHHHHHH
Q 020389 65 SRESWTEPEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 111 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~Vg--TRT~~QVrSHAQKYf 111 (327)
.+..||+||+++|++++++|| ++|..||++++ +||..||+.++.++.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999 59999999876 899999999988763
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.08 E-value=2.4e-10 Score=92.11 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=49.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q 020389 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~ 117 (327)
..+++||.||+.+|++++..||.+|..||.+|++||..||+.|+..+..++.+.
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 457899999999999999999999999999999999999999999888776543
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.02 E-value=3.7e-10 Score=93.52 Aligned_cols=52 Identities=25% Similarity=0.451 Sum_probs=46.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHH
Q 020389 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl 114 (327)
...++.||.||+++|+++++.||.+|..||.+|++||..||+.|+..+..++
T Consensus 59 ~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 59 SISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999999999999999987766554
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.00 E-value=3.2e-10 Score=90.39 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=45.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
...++.||.||+.+|+++++.||.+|..||.+|++||..||+.|+..+.
T Consensus 53 ~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 53 EVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999987653
No 26
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.00 E-value=4.8e-10 Score=87.31 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----chHhHHhhcCCCCHHHHHHHHHHH
Q 020389 66 RESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKY 110 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQKY 110 (327)
...||.+|+++|++||..|++ +|.+||++||+||.+||+.||+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467999999999999999996 799999999999999999997644
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.98 E-value=5.7e-10 Score=86.46 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=43.6
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHH
Q 020389 56 IRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQ 108 (327)
Q Consensus 56 ~rkPyt~tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQ 108 (327)
...-+.+...++.||+||++++++++++||.+|..||.++ +||..|||.++.
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 4455666778999999999999999999999999999999 999999999875
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.97 E-value=6.4e-10 Score=92.09 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=45.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
...++.||.||+++|+++++.||.+|..||++|++||..||+.|+.+|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 3467899999999999999999999999999999999999999998774
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.97 E-value=5.7e-10 Score=92.81 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=47.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHH
Q 020389 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl 114 (327)
...++.||.||+.+|++++..||..|..||.+|++||..||+.|+..++.+.
T Consensus 51 ~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 51 AVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred cccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999998887664
No 30
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.94 E-value=1e-09 Score=83.86 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=40.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCcchHhHHh-hcCCCCHHHHHHHH
Q 020389 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 107 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~-~VgTRT~~QVrSHA 107 (327)
+....||+||+.+|++||.+||+||..|+. +|++||..||..|+
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 356799999999999999999999999998 79999999999975
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.92 E-value=1.1e-09 Score=87.38 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-chHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
.++.||.||+.+|+++++.||. +|..||.+|++||..||+.|+++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 4689999999999999999996 8999999999999999999998763
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.88 E-value=1.8e-09 Score=86.96 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHcCc-chHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
+.||.||+.+|+++++.||. +|..||.+|++||..||+.++.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 68999999999999999995 9999999999999999999988773
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.88 E-value=1.1e-09 Score=90.38 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHH
Q 020389 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKY 110 (327)
...+.||+||+.+|+++++.||.+|..||.+|++||..||+.|+..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999998644
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.86 E-value=1.8e-09 Score=89.81 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC-cchHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 66 RESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
++.||.||+++|+++++.|| .+|..||.+|++||..||+.|+++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 47899999999999999999 69999999999999999999998874
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.86 E-value=2.4e-09 Score=88.36 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=45.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCc-chHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 62 ITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 62 ~tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
+...++.||.||+.+|+++++.||. +|..||.+|++||..||+.|+.+|+
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 3456789999999999999999995 8999999999999999999988764
No 36
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.78 E-value=7e-09 Score=83.38 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=41.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHH
Q 020389 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 107 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHA 107 (327)
+....||+||+++|.+++..||++|.+|+++|++||..||..|+
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 34689999999999999999999999999999999999999874
No 37
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.77 E-value=7e-10 Score=86.84 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----chHhHHhhcCCCCHHHHHHHHH
Q 020389 66 RESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQ 108 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQ 108 (327)
...||.+|.++|..||..|++ +|.+||+.||+||+.||+.|||
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999996 8999999999999999999987
No 38
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.73 E-value=1.7e-08 Score=79.74 Aligned_cols=48 Identities=10% Similarity=0.343 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHcCc-chHhHHhh----cCCCCHHHHHHHHHHHHHHH
Q 020389 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAF----IGSKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGr-dWkkIA~~----VgTRT~~QVrSHAQKYf~kl 114 (327)
.+||.||++.|++++++||. +|++|+.. +.+||..||+.++.+++.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999997 99999974 88999999999999987655
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.71 E-value=6.8e-09 Score=88.43 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=44.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHH
Q 020389 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKY 110 (327)
...+++||+||+.+|+++++.||.+|..||.+|++||..||+.|+..+
T Consensus 107 ~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 107 EVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999997644
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.68 E-value=1.9e-08 Score=85.72 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=45.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCc-chHhHHhhcCCCCHHHHHHHHHHHH
Q 020389 63 TKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (327)
...++.||.||+.+|+++++.||. +|..||.++++||..||+.|+.+|+
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred CcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 456799999999999999999995 8999999999999999999988764
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.64 E-value=3.9e-08 Score=81.03 Aligned_cols=53 Identities=9% Similarity=0.332 Sum_probs=46.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCc-chHhHHhhc----CCCCHHHHHHHHHHHHHHH
Q 020389 62 ITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 62 ~tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~V----gTRT~~QVrSHAQKYf~kl 114 (327)
..+.+.+||.||++.|++|+++||. +|.+|+... ..||..||+.++.+++.+.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457889999999999999999997 999999754 7999999999988876543
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.64 E-value=4.8e-08 Score=82.38 Aligned_cols=57 Identities=11% Similarity=0.316 Sum_probs=49.8
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHHHcCc-chHhHHhhc----CCCCHHHHHHHHHHHHHHH
Q 020389 58 KPYTITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 58 kPyt~tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~V----gTRT~~QVrSHAQKYf~kl 114 (327)
.+....+.+++||.||++.+++++++||. +|.+|+.+. ..||..||+.++.+++...
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 33455677899999999999999999997 999999774 7999999999999887764
No 43
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.62 E-value=1.1e-07 Score=80.34 Aligned_cols=54 Identities=13% Similarity=0.297 Sum_probs=47.5
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCc-chHhHHhhc----CCCCHHHHHHHHHHHHHHH
Q 020389 61 TITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 61 t~tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~V----gTRT~~QVrSHAQKYf~kl 114 (327)
...+.+.+||.||++.+++++++||. +|.+|+.+. ..||..||+.+|.+++..-
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34456889999999999999999997 999999753 7999999999999887665
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.62 E-value=5.8e-08 Score=73.71 Aligned_cols=45 Identities=13% Similarity=0.400 Sum_probs=41.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCcchHhHH---hhcCCCCHHHHHHHHH
Q 020389 64 KSRESWTEPEHDKFLEALQLFDRDWKKIE---AFIGSKTVIQIRSHAQ 108 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA---~~VgTRT~~QVrSHAQ 108 (327)
..+..||+||.+.+++|+++||+.|++|+ .|+..||.+.++..+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHH
Confidence 46789999999999999999999999999 5888999999998654
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.29 E-value=3.3e-07 Score=85.30 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCcc------hHhHHhhcCCCCHHHHHHHHHHHHHH
Q 020389 64 KSRESWTEPEHDKFLEALQLFDRD------WKKIEAFIGSKTVIQIRSHAQKYFLK 113 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrd------WkkIA~~VgTRT~~QVrSHAQKYf~k 113 (327)
..+..||+||++++|+++++||.. |..||.++++||..|||+||..|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 356799999999999999999974 99999999999999999999988644
No 46
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.50 E-value=0.00011 Score=70.18 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHcCc-chHhHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020389 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (327)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (327)
..||..+-..|+.|+++||+ +|..||..|++||.++|+.|++-|+.+.+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCT 160 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHH
Confidence 37999999999999999998 99999999999999999999998887763
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.50 E-value=0.00024 Score=57.51 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcchHhHHhhc-----CCCCHHHHHHHHHHHHHHHhhc
Q 020389 65 SRESWTEPEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 117 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~V-----gTRT~~QVrSHAQKYf~kl~k~ 117 (327)
....||.||.+.+++.+++||-+|-.|+... +.||.++++.++-....++.+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3489999999999999999999999999766 5799999999876666666543
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.16 E-value=0.0038 Score=50.83 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCc---chHhHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q 020389 66 RESWTEPEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr---dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~ 117 (327)
-..||.||++-+|.+.++-|. -|..||.-++.|++.||+.++|....-+++.
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999995 9999999999999999999998875555543
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.14 E-value=6.5e-05 Score=75.63 Aligned_cols=42 Identities=14% Similarity=0.408 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHH
Q 020389 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 107 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHA 107 (327)
...||++|+.+|.++|.+||++|..|+.+|++||..+|..||
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 468999999999999999999999999999999999999885
No 50
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.14 E-value=0.00056 Score=50.63 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-cchHhHHh-hcCCCCHHHHHHHHHHHH
Q 020389 66 RESWTEPEHDKFLEALQLF--------D-RDWKKIEA-FIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~y--------G-rdWkkIA~-~VgTRT~~QVrSHAQKYf 111 (327)
+..||+||+..+++-|..| | +-|+.|++ .+..+|-.++|.|+.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 5 39999998 899999999999987764
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.33 E-value=0.0076 Score=48.91 Aligned_cols=53 Identities=17% Similarity=0.354 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcchHhHHh-hc----CCCCHHHHHHHHHHHHHHHhhc
Q 020389 65 SRESWTEPEHDKFLEALQLFDRDWKKIEA-FI----GSKTVIQIRSHAQKYFLKVQKN 117 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGrdWkkIA~-~V----gTRT~~QVrSHAQKYf~kl~k~ 117 (327)
....||.||.+.+.+..+.|+-+|--|+. |- +.||.++++.++=....+|.+.
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999994 43 3799999999987666666543
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.09 E-value=0.0087 Score=52.32 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---cchHhHHhh--cCCCCHHHHHHHHHHHHHHHhh
Q 020389 65 SRESWTEPEHDKFLEALQLFD---RDWKKIEAF--IGSKTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG---rdWkkIA~~--VgTRT~~QVrSHAQKYf~kl~k 116 (327)
.-..||+.|-..|+.|+.+|| .+|..|++. +..||..+|+.+++.+..+..+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999 389999864 4589999999999988776544
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.94 E-value=0.0081 Score=58.93 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHcCc-chHhHHhhcC-CCCHHHHHHHHHHHHHHH
Q 020389 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGr-dWkkIA~~Vg-TRT~~QVrSHAQKYf~kl 114 (327)
..||..+=..|+.|+++||| +-..||..|+ +||.++|+.+++-|+.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence 37999999999999999998 8999999998 999999999998877654
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.90 E-value=0.013 Score=56.04 Aligned_cols=53 Identities=15% Similarity=0.306 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc----chHhHH------------hhcCCCCHHHHHHHHHHHHHHHhhc
Q 020389 65 SRESWTEPEHDKFLEALQLFDR----DWKKIE------------AFIGSKTVIQIRSHAQKYFLKVQKN 117 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr----dWkkIA------------~~VgTRT~~QVrSHAQKYf~kl~k~ 117 (327)
++..||++|++.||-+|.+||- +|.+|- -|+.+||+.+|..|++-....|.|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999994 899996 3889999999999999777767664
No 55
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.82 E-value=0.012 Score=45.33 Aligned_cols=50 Identities=12% Similarity=0.262 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----------cchHhHHhhcC----CCCHHHHHHHHHHHHHHH
Q 020389 65 SRESWTEPEHDKFLEALQLFD----------RDWKKIEAFIG----SKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG----------rdWkkIA~~Vg----TRT~~QVrSHAQKYf~kl 114 (327)
....||++|..+||++..... ..|+.||+.+. .||+.||+.-+.+....-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999996532 18999997655 799999999877654444
No 56
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.49 E-value=0.0023 Score=49.58 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHcCc---chHhHHhhcCCCCHHHHHHHHHHHHHHH
Q 020389 67 ESWTEPEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGr---dWkkIA~~VgTRT~~QVrSHAQKYf~kl 114 (327)
-.||.||++-+|...++-|. -|..||.-+ .||+.||..++|....-+
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 48999999999999999996 999999888 799999999987654333
No 57
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=92.47 E-value=0.13 Score=41.14 Aligned_cols=55 Identities=25% Similarity=0.508 Sum_probs=38.5
Q ss_pred HHHHHHHHcC--------cchHhHHhhcCC-----CCHHHHHHHHHHHH---HHHhhcCCCCCCCCCCCCC
Q 020389 76 KFLEALQLFD--------RDWKKIEAFIGS-----KTVIQIRSHAQKYF---LKVQKNGTAEHLPPPRPKR 130 (327)
Q Consensus 76 lFLeaLe~yG--------rdWkkIA~~VgT-----RT~~QVrSHAQKYf---~kl~k~g~~~~iP~pr~KR 130 (327)
+|..++...| +.|++|++-+|- ....+++.||++|+ .+..+......+|+.+||+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 4445566676 489999988772 23478999999994 3444455577788888764
No 58
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.47 E-value=0.59 Score=40.60 Aligned_cols=48 Identities=17% Similarity=0.380 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-cchHhHHh--h------------cCCCCHHHHHHHHHHHHHH
Q 020389 65 SRESWTEPEHDKFLEALQLFD-RDWKKIEA--F------------IGSKTVIQIRSHAQKYFLK 113 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~--~------------VgTRT~~QVrSHAQKYf~k 113 (327)
....||.+|+..||.|+.+|| ..|..|-. - ..+.+..++..++. |+++
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~ 195 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIK 195 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHH
Confidence 355799999999999999999 69999963 1 12456677888886 4444
No 59
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.09 E-value=1.3 Score=41.61 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCc---chHhHH--hhcCCCCHHHHHHHHHHHH
Q 020389 66 RESWTEPEHDKFLEALQLFDR---DWKKIE--AFIGSKTVIQIRSHAQKYF 111 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr---dWkkIA--~~VgTRT~~QVrSHAQKYf 111 (327)
.+.||+.|-++|+.++.+||. +|..|+ .-+..|+...|+.-++...
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMM 53 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 468999999999999999994 899997 4566799888777665443
No 60
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.93 E-value=0.51 Score=37.44 Aligned_cols=47 Identities=28% Similarity=0.444 Sum_probs=35.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc--chH--------------hHHhhcC-----CCCHHHHHHHHHHH
Q 020389 64 KSRESWTEPEHDKFLEALQLFDR--DWK--------------KIEAFIG-----SKTVIQIRSHAQKY 110 (327)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGr--dWk--------------kIA~~Vg-----TRT~~QVrSHAQKY 110 (327)
+..+.|+++=+..|++||+.|-. .|+ -|++||. .||..||-||-|-.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHH
Confidence 35689999999999999999962 121 2344443 79999999999844
No 61
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=84.69 E-value=1.5 Score=40.98 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.9
Q ss_pred chHhHHhhcCCCCHHHHHHHHHHHHHHH
Q 020389 87 DWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (327)
Q Consensus 87 dWkkIA~~VgTRT~~QVrSHAQKYf~kl 114 (327)
-|+.||++.+.+|...+|.++.|+..+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 7999999999999999999999875553
No 62
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=80.22 E-value=1.9 Score=35.50 Aligned_cols=31 Identities=10% Similarity=0.413 Sum_probs=24.2
Q ss_pred cchHhHHhhcCCCC----HHHHHHHHHHHHHHHhh
Q 020389 86 RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 86 rdWkkIA~~VgTRT----~~QVrSHAQKYf~kl~k 116 (327)
+.|++|++-+|--+ ..++|.||++|+...++
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 38999998887533 57999999999666554
No 63
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=80.13 E-value=4.6 Score=39.64 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc----chHhHH------------hhcCCCCHHHHHHHHHHHHHHHhhcC
Q 020389 65 SRESWTEPEHDKFLEALQLFDR----DWKKIE------------AFIGSKTVIQIRSHAQKYFLKVQKNG 118 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr----dWkkIA------------~~VgTRT~~QVrSHAQKYf~kl~k~g 118 (327)
.+..||++|+..+|-+|.+||- .|.+|- =|+.+||+.+|..++.-....|.|..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~ 296 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEF 296 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999994 799992 23789999999999987777777654
No 64
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.05 E-value=2.8 Score=39.28 Aligned_cols=27 Identities=26% Similarity=0.657 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-chHhHH
Q 020389 66 RESWTEPEHDKFLEALQLFDR-DWKKIE 92 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr-dWkkIA 92 (327)
.-.|+.+|+..||.||.+||- .|..|.
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 457999999999999999995 999996
No 65
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=66.92 E-value=11 Score=29.70 Aligned_cols=31 Identities=13% Similarity=0.344 Sum_probs=24.5
Q ss_pred cchHhHHhhcCCCC----HHHHHHHHHHHHHHHhh
Q 020389 86 RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 86 rdWkkIA~~VgTRT----~~QVrSHAQKYf~kl~k 116 (327)
+.|+.|++-+|--. ..+++.|+++|+...+.
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 48999998887433 57999999999776654
No 66
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=66.79 E-value=5.1 Score=32.44 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=24.8
Q ss_pred cchHhHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020389 86 RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (327)
Q Consensus 86 rdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (327)
+.|+.|++-+|-....+++.||++|+...+
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHHSHHH
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 489999998886668899999999965544
No 67
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=60.85 E-value=11 Score=30.65 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.3
Q ss_pred HHHHHHHHcC--------cchHhHHhhcCCCC----HHHHHHHHHHHHHHHhh
Q 020389 76 KFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 76 lFLeaLe~yG--------rdWkkIA~~VgTRT----~~QVrSHAQKYf~kl~k 116 (327)
+|..++...| +.|++|++-+|-.. ..++|.||++|+...+.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3444566666 48999998887433 67999999999665443
No 68
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=59.45 E-value=9.9 Score=31.34 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=26.9
Q ss_pred cchHhHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 020389 86 RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 86 rdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (327)
+.|++|++-+|-....++|.||++|+...+.
T Consensus 70 k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 3999999888866699999999999887765
No 69
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.37 E-value=16 Score=29.88 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=28.5
Q ss_pred HHHHHHHcC--------cchHhHHhhcCCCC----HHHHHHHHHHHHHHHhh
Q 020389 77 FLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 77 FLeaLe~yG--------rdWkkIA~~VgTRT----~~QVrSHAQKYf~kl~k 116 (327)
|..++...| +.|++|++-+|-.. ..++|.|+++|+.....
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 344455556 48999998887432 46999999999766554
No 70
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=52.62 E-value=41 Score=22.98 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 020389 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (327)
..+++.|...|.. .-..|..++.||+.+|- +...|+.+-.+-..++.+
T Consensus 14 ~~L~~~~r~il~l-~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLL-TQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHH-HHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHH-HHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 3567777666553 33567899999999986 788888888777777754
No 71
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=49.90 E-value=19 Score=29.51 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=23.9
Q ss_pred cchHhHHhhcCC-----CCHHHHHHHHHHHHHHHhh
Q 020389 86 RDWKKIEAFIGS-----KTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 86 rdWkkIA~~VgT-----RT~~QVrSHAQKYf~kl~k 116 (327)
+.|+.|++-+|- -...++|.||++|+.....
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 489999988872 1268999999999766544
No 72
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=49.58 E-value=16 Score=28.23 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=23.5
Q ss_pred cchHhHHhhcCCC----CHHHHHHHHHHHHHHHhh
Q 020389 86 RDWKKIEAFIGSK----TVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 86 rdWkkIA~~VgTR----T~~QVrSHAQKYf~kl~k 116 (327)
+.|++|++.+|-. ...++|.|+++|+...+.
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~ 92 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYEL 92 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 4899999887732 267999999999766543
No 73
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.69 E-value=49 Score=22.82 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 020389 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (327)
-..+|+.|.+.|.. + ..|...++||+.+|- +...|+.|-..-+.++..
T Consensus 9 ~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHCC
Confidence 45688888887766 4 567899999999886 889999998887777743
No 74
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=45.09 E-value=21 Score=29.48 Aligned_cols=31 Identities=13% Similarity=0.460 Sum_probs=24.1
Q ss_pred cchHhHHhhcCC-----CCHHHHHHHHHHHHHHHhh
Q 020389 86 RDWKKIEAFIGS-----KTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 86 rdWkkIA~~VgT-----RT~~QVrSHAQKYf~kl~k 116 (327)
+.|++|+.-+|- -...++|.||+||+.....
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 499999987762 2357899999999877654
No 75
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.30 E-value=38 Score=23.85 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020389 68 SWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (327)
Q Consensus 68 ~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (327)
.+|+.|.+.|.. + ..|...+.||+.++- +...|+.|-..-+.++.
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 467777777765 4 567899999999885 88899998877777664
No 76
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=43.21 E-value=72 Score=24.03 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q 020389 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (327)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~ 117 (327)
...|+.|.+.|.. + ..|..-+.||+.++- +...|+.|-..-+.++...
T Consensus 26 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 4688888888776 4 788899999999986 8999999988888888543
No 77
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=42.55 E-value=38 Score=23.93 Aligned_cols=27 Identities=33% Similarity=0.288 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCcchHhHHhhcCC
Q 020389 71 EPEHDKFLEALQLFDRDWKKIEAFIGS 97 (327)
Q Consensus 71 ~EEh~lFLeaLe~yGrdWkkIA~~VgT 97 (327)
+-|...+.++|+.+|.++.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 468889999999999999999999995
No 78
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=40.68 E-value=23 Score=29.75 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=23.4
Q ss_pred cchHhHHhhcCCC-----CHHHHHHHHHHHHHHHhh
Q 020389 86 RDWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 86 rdWkkIA~~VgTR-----T~~QVrSHAQKYf~kl~k 116 (327)
+.|++|++-+|-- ...+++.||++|+...+.
T Consensus 86 ~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 86 KLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp TCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 3899999887732 267999999999655443
No 79
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.54 E-value=49 Score=24.30 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020389 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (327)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (327)
-...|+.|.+.|.. + ..|..-++||+.++- +...|+.|-.+-+.++.
T Consensus 19 ~~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 19 VNQLTPRERDILKL-I-AQGLPNKMIARRLDI-TESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGGSCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTT
T ss_pred HccCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 35688999887776 4 678899999999885 88999998877777764
No 80
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.30 E-value=71 Score=24.16 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020389 65 SRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (327)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (327)
....-|+.|.+.|.... -|..-+.||+.++- +...|+.|-++-+.|+.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~i-S~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALHL-SKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 34567888887776544 78899999998885 88999999988887774
No 81
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=33.08 E-value=67 Score=24.26 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHcCcchHhHHhhcCC
Q 020389 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGS 97 (327)
Q Consensus 69 WT~EEh~lFLeaLe~yGrdWkkIA~~VgT 97 (327)
..+-|...+.++|+.+|.+..+.|+.+|-
T Consensus 48 l~~~E~~~i~~aL~~~~gn~~~aA~~LGI 76 (91)
T 1ntc_A 48 QPELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 44568889999999999999999999984
No 82
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.04 E-value=84 Score=24.13 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=24.3
Q ss_pred HcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 020389 83 LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 83 ~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (327)
..|...+.||+.+|- |...|+.+..+-..++.+
T Consensus 122 ~~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 122 IRGYSYREIATILSK-NLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp TTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 446799999998885 777888777666666554
No 83
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=32.03 E-value=1.1e+02 Score=22.36 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHhhhcCCcchHHHHHHHhhcCCCc
Q 020389 275 IDVETVLLLMRNLSINLTSPDFEDHRRLLSSYEIDP 310 (327)
Q Consensus 275 i~~eTvLllmrNLs~NL~sp~fe~~~~lls~y~~~~ 310 (327)
|+.+.+..+|+.|-.+++. ++.+.++..++.+.
T Consensus 46 I~~~El~~~l~~~g~~~~~---~e~~~l~~~~D~d~ 78 (94)
T 2kz2_A 46 ISAAELRHVMTNLGEKLTD---EEVDEMIREADIDG 78 (94)
T ss_dssp BCHHHHHHHHHHHTCCCCH---HHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCCCCCH---HHHHHHHHHhCCCC
Confidence 8888888899988766654 44566777777654
No 84
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=27.96 E-value=1.2e+02 Score=21.21 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHH---cCcchHhHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020389 68 SWTEPEHDKFLEALQL---FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (327)
Q Consensus 68 ~WT~EEh~lFLeaLe~---yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (327)
.-++.|.+.|..-+-. .|..|+.||+.+|- |...|+.|-.+-+.++.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~i-s~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGV-TRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 3466666665543321 46799999999885 78888888777777776
No 85
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=27.75 E-value=49 Score=27.14 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCc-chHhHHhhcCCCCHHHHHHHHHHHHHHHhhcC
Q 020389 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (327)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g 118 (327)
+-+.++|+.|+.-|+ .|+.||+.+|- |...|+.|. .++.+.|
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl----~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRI----QKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHH----HHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCC
Confidence 456788999999887 99999999986 888998874 4555555
No 86
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.51 E-value=79 Score=23.32 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 020389 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (327)
...|+.|.+.|.. + ..|..-+.||+.+|- +...|+.|-.+-+.++..
T Consensus 28 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLL-I-AKGYSNQEIASASHI-TIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHH-H-HTTCCTTHHHHHHTC-CHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHCC
Confidence 4678888888766 4 678899999999885 889999998777777643
No 87
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=25.01 E-value=1.6e+02 Score=23.47 Aligned_cols=61 Identities=11% Similarity=0.309 Sum_probs=30.7
Q ss_pred ChHHHhhhhhcccCCCchhHHHHhhcCC-----chhHHHHHHHHHHHhhhcCCcchHHHHHHHhhcCCC
Q 020389 246 DFAQVYTFIGSVFDPNASDHVQKLKKMD-----PIDVETVLLLMRNLSINLTSPDFEDHRRLLSSYEID 309 (327)
Q Consensus 246 dFaqVY~FigsvFdp~~~~hlq~Lk~Md-----pi~~eTvLllmrNLs~NL~sp~fe~~~~lls~y~~~ 309 (327)
+|..|.+-+| +.| +...+++|..+| .|+.+..+.+|..+.........++.++.+..|+.+
T Consensus 32 El~~~lr~lG--~~~-t~~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d 97 (159)
T 3i5g_C 32 KVGDLLRCLG--MNP-TEAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDRE 97 (159)
T ss_dssp GHHHHHHHTT--CCC-CHHHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcC--CCC-CHHHHHHHHcccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcC
Confidence 4555555555 223 233455444333 366666666666555444333445555555555543
No 88
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=24.88 E-value=1.6e+02 Score=22.75 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHHHHHHHHHHHh
Q 020389 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (327)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (327)
..-|+.|.+.|.. + ..|...++||+.++- +...|+.|-+.-+.++.
T Consensus 33 ~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 33 KRLSPKESEVLRL-F-AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSCCHHHHHHHHH-H-HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 4567888887755 3 368899999999886 88999999888877774
No 89
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=23.57 E-value=53 Score=25.16 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHH
Q 020389 71 EPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105 (327)
Q Consensus 71 ~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrS 105 (327)
.+|-.+.|. |+||+..|+.+|- +..+|..
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~Lg~-~~~~I~~ 40 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGELGY-QPEHIDS 40 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHTTC-CHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHcCC-CHHHHHH
Confidence 355566666 9999999999997 4555554
No 90
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.47 E-value=1.8e+02 Score=21.35 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=23.9
Q ss_pred cCcchHhHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 020389 84 FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (327)
Q Consensus 84 yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (327)
.|...+.||+.+|- +...|+.|..+-+.++.+
T Consensus 52 ~g~s~~eIA~~lgi-s~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 52 RGWSTAQIATDLGI-AEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 36688999988885 677888877776666654
No 91
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=23.21 E-value=85 Score=24.00 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHcCcchHhHHhhcCC
Q 020389 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGS 97 (327)
Q Consensus 69 WT~EEh~lFLeaLe~yGrdWkkIA~~VgT 97 (327)
..+-|.+.+.++|+.++.+..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 34568888999999999999999999984
No 92
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=21.94 E-value=1.2e+02 Score=22.87 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=34.2
Q ss_pred HHHHHHHHHHc-----Cc--chHhHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Q 020389 74 HDKFLEALQLF-----DR--DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLP 124 (327)
Q Consensus 74 h~lFLeaLe~y-----Gr--dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~~~~iP 124 (327)
....|+.|+.+ |. .-..|++.+|- |...|+. |+..|.+.|.-...|
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S~~TVrr----~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGL-SIYQVRL----YLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHHH----HHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-CHHHHHH----HHHHHHHCCcEEecC
Confidence 46677888887 54 79999999998 7777766 577788877654444
No 93
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=20.77 E-value=1.4e+02 Score=23.39 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCcchHhHHhhcCCCCHHHHHH
Q 020389 70 TEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105 (327)
Q Consensus 70 T~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrS 105 (327)
++.-...|..--+..|.+|+++|..+|- +..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~Lg~-s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELARELQF-SVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHTTC-CHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHcCC-CHHHHHH
Confidence 3444455555558889999999999984 4444443
No 94
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.24 E-value=1.7e+02 Score=23.17 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCc-chHhHHhhcCCCCHHHHHHHHHHHHHHHhhcC
Q 020389 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (327)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g 118 (327)
+-+.++|..|+..|+ .|+.||+.+|- +...|+.+ +.++.+.|
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~----l~~L~~~G 51 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT-TRQRIARR----IDKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS-CHHHHHHH----HHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCC
Confidence 345678899999887 99999999996 77788776 44555554
Done!