BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020390
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 127/280 (45%), Gaps = 22/280 (7%)
Query: 49 FADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVLPFF 106
F+DG + I ++RG+ V L S +P + E + ++ AL R T +P+F
Sbjct: 39 FSDGEIQVEIQ--ENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYF 96
Query: 107 PTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFE 166
+R VA + A++++N+ G ++ D+HA Q + +F V ++
Sbjct: 97 GYARQDRRPRSARVAIS---AKVVANM-LEIAGVERIITMDLHADQIQGFFDIPVDNIYA 152
Query: 167 TGIPLLKQRLHQLPDANNIVIAFPDDGAWKR---FHKMLDHFPTVVCAKVREGDKRIVRI 223
T I L R PD +++ PD G R K L+ ++ + + + V
Sbjct: 153 TPILLGDLRKQNYPD---LLVVSPDVGGVVRARALAKQLNCDLAIIDKRRPKANVAEVMN 209
Query: 224 KEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPKGSWERFTLKNG 283
G G VI+DD+V + GTL + +VL GA +V AY TH V G+ +R
Sbjct: 210 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIA---- 265
Query: 284 ENMENAFANFWITDSCPLTVKAIANKAPFEVLSLAGSIAD 323
+A +TD+ PL+ +++A LS AG +A+
Sbjct: 266 ---ASALDELVVTDTIPLSAESLACP-KIRALSSAGLLAE 301
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 121/276 (43%), Gaps = 28/276 (10%)
Query: 15 KQVHLFYCVECEELARKVAAQSDLITLQ--SINWRNFADGWPNLYINSAHDIRGQHVAFL 72
K + +F ELA+++A D++ +Q + F+DG + IN IRG +
Sbjct: 8 KNLKIFSLNSNPELAKEIA---DIVGVQLGKCSVTRFSDG--EVQINIEESIRGCDCYII 62
Query: 73 ASFSSP--GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARIL 130
S S P I E + ++ AL R + +V+P++ +R + TA A +L
Sbjct: 63 QSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLL 122
Query: 131 SNIPTSRGGPTSLVIYDIHALQERFYFS---DHVLPLFETGIPLLKQRLHQLPDANNIVI 187
G T ++ D+HA Q + +F DH++ G+P+L + + +IVI
Sbjct: 123 ET-----AGATRVIALDLHAPQIQGFFDIPIDHLM-----GVPILGEYFEG-KNLEDIVI 171
Query: 188 AFPDDGAWKRFHKMLDHF--PTVVCAKVREGDKRIVRIKE--GNPAGCHVVIVDDLVQSG 243
PD G R K+ D P + K R + + GN G +++DD++ +
Sbjct: 172 VSPDHGGVTRARKLADRLKAPIAIIDK-RRPRPNVAEVMNIVGNIEGKTAILIDDIIDTA 230
Query: 244 GTLIECQKVLAAHGAAKVSAYVTHGVFPKGSWERFT 279
GT+ L +GA +V A TH V + ER
Sbjct: 231 GTITLAANALVENGAKEVYACCTHPVLSGPAVERIN 266
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 31/252 (12%)
Query: 45 NWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLP 104
+ R F DG LY+ D+ G ++ + + S + E I + A+ S ++ P
Sbjct: 28 DERRFPDG--ELYLRYDEDLTGHNIFIIGNTHSDAEVMEMILTLSAIQDYRTKSVNIIAP 85
Query: 105 FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFY----FSDH 160
++ + + G+ ++ +IL+ I +S + V DIH + Y FSD
Sbjct: 86 YYGYARQHQRYKNGEPISS----QILTEIYSSYSNSIATV--DIHDEKTLSYSKVKFSD- 138
Query: 161 VLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM-----LDHFPTVVCAKVRE 215
++ R ++ D + +V PDDG R + HF K R
Sbjct: 139 ----LHANDAIV--RYYKNVDVDYVV--SPDDGGLARVADISAKLGKKHF---FIEKKRI 187
Query: 216 GDKRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPKGS 274
D+ + +++ + G ++IVDD++ +GGT+ + +L GA+K+ HG+F GS
Sbjct: 188 DDRTVEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGS 247
Query: 275 WERFTLKNGENM 286
+ L+N + +
Sbjct: 248 ENKI-LQNADEI 258
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 31/252 (12%)
Query: 45 NWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLP 104
+ R F DG LY+ D+ G ++ + + S + E I + A+ S ++ P
Sbjct: 30 DERRFPDG--ELYLRYDEDLTGHNIFIIGNTHSDAEVMEMILTLSAIQDYRTKSVNIIAP 87
Query: 105 FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFY----FSDH 160
++ + + G+ ++ +IL+ I +S S+ DIH + Y FSD
Sbjct: 88 YYGYARQHQRYKNGEPISS----QILTEIYSSYS--NSIATVDIHDEKTLSYSKVKFSD- 140
Query: 161 VLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM-----LDHFPTVVCAKVRE 215
++ R ++ D + +V PDDG R + HF K R
Sbjct: 141 ----LHANDAIV--RYYKNVDVDYVV--SPDDGGLARVADISAKLGKKHF---FIEKKRI 189
Query: 216 GDKRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPKGS 274
D+ + +++ + G ++IVDD++ +GGT+ + +L GA+K+ HG+F GS
Sbjct: 190 DDRTVEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGS 249
Query: 275 WERFTLKNGENM 286
+ L+N + +
Sbjct: 250 ENKI-LQNADEI 260
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 141/316 (44%), Gaps = 22/316 (6%)
Query: 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASF 75
+ +F ++L++K+A + L L + + F++ + I + +RG+ V + S
Sbjct: 3 NIKIFSGSSHQDLSQKIADRLGL-ELGKVVTKKFSNQETCVEIGES--VRGEDVYIVQSG 59
Query: 76 SSP--GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNI 133
+ E + +I A + T V+P FP + R +++ D + A A++++N+
Sbjct: 60 CGEINDNLMELLIMINACKIASASRVTAVIPCFP---YAR-QDKKDKSRAPISAKLVANM 115
Query: 134 PTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDG 193
S G ++ D+HA Q + +F V L+ +LK + + N I PD G
Sbjct: 116 -LSVAGADHIITMDLHAAQIQGFFDIPVDNLYAEP-AVLKWIRENISEWRNCTIVSPDAG 173
Query: 194 AWKRFHKMLDHFPT--VVCAKVREGDKRIVR-IKEGNPAGCHVVIVDDLVQSGGTLIECQ 250
KR + D + K R+ + R + G+ ++VDD+ + GT+
Sbjct: 174 GAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAA 233
Query: 251 KVLAAHGAAKVSAYVTHGVFPKGSWERFTLKNGENMENAFANFWITDSCPLTVKAIANKA 310
L + GA +V A +THG+F + R F +T++ P K + + +
Sbjct: 234 DKLLSAGATRVYAILTHGIFSGPAISRIN-------NACFEAVVVTNTIPQEDK-MKHCS 285
Query: 311 PFEVLSLAGSIADALQ 326
+V+ ++ +A+A++
Sbjct: 286 KIQVIDISMILAEAIR 301
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 141/316 (44%), Gaps = 22/316 (6%)
Query: 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASF 75
+ +F ++L++K+A + L L + + F++ + I + +RG+ V + S
Sbjct: 3 NIKIFSGSSHQDLSQKIADRLGL-ELGKVVTKKFSNQETCVEIGES--VRGEDVYIVQSG 59
Query: 76 SSP--GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNI 133
+ E + +I A + T V+P FP + R +++ D + A A++++N+
Sbjct: 60 CGEINDNLMELLIMINACKIASASRVTAVIPCFP---YAR-QDKKDKSRAPISAKLVANM 115
Query: 134 PTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDG 193
S G ++ D+HA Q + +F V L+ +LK + + N I PD G
Sbjct: 116 -LSVAGADHIITMDLHASQIQGFFDIPVDNLYAEP-AVLKWIRENISEWRNCTIVSPDAG 173
Query: 194 AWKRFHKMLDHFPT--VVCAKVREGDKRIVR-IKEGNPAGCHVVIVDDLVQSGGTLIECQ 250
KR + D + K R+ + R + G+ ++VDD+ + GT+
Sbjct: 174 GAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAA 233
Query: 251 KVLAAHGAAKVSAYVTHGVFPKGSWERFTLKNGENMENAFANFWITDSCPLTVKAIANKA 310
L + GA +V A +THG+F + R F +T++ P K + + +
Sbjct: 234 DKLLSAGATRVYAILTHGIFSGPAISRIN-------NACFEAVVVTNTIPQEDK-MKHCS 285
Query: 311 PFEVLSLAGSIADALQ 326
+V+ ++ +A+A++
Sbjct: 286 KIQVIDISMILAEAIR 301
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 140/316 (44%), Gaps = 22/316 (6%)
Query: 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASF 75
+ +F ++L++K+A + L L + + F++ + I + +RG+ V + S
Sbjct: 3 NIKIFSGSSHQDLSQKIADRLGL-ELGKVVTKKFSNQETCVEIGES--VRGEDVYIVQSG 59
Query: 76 SSP--GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNI 133
+ E + +I A + T V+P FP + R +++ D + A A++++N+
Sbjct: 60 CGEINDNLMELLIMINACKIASASRVTAVIPCFP---YAR-QDKKDKSRAPISAKLVANM 115
Query: 134 PTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDG 193
S G ++ D+HA Q + +F V L +LK + + N I PD G
Sbjct: 116 -LSVAGADHIITMDLHASQIQGFFDIPVDNLMAEP-AVLKWIRENISEWRNCTIVSPDAG 173
Query: 194 AWKRFHKMLDHFPT--VVCAKVREGDKRIVR-IKEGNPAGCHVVIVDDLVQSGGTLIECQ 250
KR + D + K R+ + R + G+ ++VDD+ + GT+
Sbjct: 174 GAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAA 233
Query: 251 KVLAAHGAAKVSAYVTHGVFPKGSWERFTLKNGENMENAFANFWITDSCPLTVKAIANKA 310
L + GA +V A +THG+F + R F +T++ P K + + +
Sbjct: 234 DKLLSAGATRVYAILTHGIFSGPAISRIN-------NACFEAVVVTNTIPQEDK-MKHCS 285
Query: 311 PFEVLSLAGSIADALQ 326
+V+ ++ +A+A++
Sbjct: 286 KIQVIDISMILAEAIR 301
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 21/253 (8%)
Query: 24 ECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPG-VIF 82
+ + LA KVA + L + ++ F D +Y+ +I + + + I
Sbjct: 8 QSQNLAFKVAKLLN-TKLTRVEYKRFPDN--EIYVRIVDEINDDEAVIINTQKNQNDAIV 64
Query: 83 EQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTS 142
E I + AL V TLV P+ ++ G+ + +A+I SNI
Sbjct: 65 ETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNIVDK------ 118
Query: 143 LVIYDIHALQERFYFSDHVLP-LFETGIPLLKQRLHQLPDANNIVIAFPDDGAW---KRF 198
L+ + H + +F+ +P ++ +P L + + N+ ++ PD GA K
Sbjct: 119 LITINPHETHIKDFFT---IPFIYGDAVPKLAEYVKD--KLNDPIVLAPDKGALEFAKTA 173
Query: 199 HKMLD-HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHG 257
K+L+ + + ++ + +I K + V IVDD++ +GGT+ K+L G
Sbjct: 174 SKILNAEYDYLEKTRLSPTEIQIAP-KTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQG 232
Query: 258 AAKVSAYVTHGVF 270
A K+ A H V
Sbjct: 233 AKKIIAACVHPVL 245
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 25 CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIF 82
C EL++K+A + + ++ + + + + +RG+ V + + S I
Sbjct: 41 CMELSKKIAER---LGVEMGKVQVYQEPNRETRVQIQESVRGKDVFIIQTVSKDVNTTIM 97
Query: 83 EQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTS 142
E + ++YA S V+P+FP +M + G + ++++L+++ + G T
Sbjct: 98 ELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSI-----VSKLLASM-MCKAGLTH 151
Query: 143 LVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLH-QLPDANNIVIAFPDDGAWKR 197
L+ D+H + + +F+ V L + P L Q + ++PD N VI + KR
Sbjct: 152 LITMDLHQKEIQGFFNIPVDNLRAS--PFLLQYIQEEIPDYRNAVIVAKSPASAKR 205
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 25 CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIF 82
C ELA+++ + +S+ ++ +G + I + +RGQ + + + +
Sbjct: 38 CTELAKRITERLGAELGKSVVYQE-TNGETRVEIKES--VRGQDIFIIQTIPRDVNTAVM 94
Query: 83 EQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTS 142
E + + YAL + V+P+FP +M + G + + ++L+++ ++ G T
Sbjct: 95 ELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSI-----VCKLLASM-LAKAGLTH 148
Query: 143 LVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLH-QLPDANNIVIAFPDDGAWKR 197
++ D+H + + +FS V L + P L Q + ++P+ N VI A KR
Sbjct: 149 IITMDLHQKEIQGFFSFPVDNLRAS--PFLLQYIQEEIPNYRNAVIVAKSPDAAKR 202
>pdb|1UMI|A Chain A, Structural Basis Of Sugar-Recognizing Ubiquitin Ligase
Length = 184
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 107 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 166
Query: 223 IK 224
K
Sbjct: 167 WK 168
>pdb|2RJ2|A Chain A, Crystal Structure Of The Sugar Recognizing Scf Ubiquitin
Ligase At 1.7 Resolution
Length = 185
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 108 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 167
Query: 223 IK 224
K
Sbjct: 168 WK 169
>pdb|1UMH|A Chain A, Structural Basis Of Sugar-Recognizing Ubiquitin Ligase
Length = 184
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 107 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 166
Query: 223 IK 224
K
Sbjct: 167 WK 168
>pdb|2E33|A Chain A, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 197
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 120 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 179
Query: 223 IK 224
K
Sbjct: 180 WK 181
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 230 GCHVVIVDDLVQSGGTLIECQKVLAAHG 257
G VV+V+DL+ +GG+ I C + L G
Sbjct: 137 GQKVVVVEDLISTGGSAITCVEALREAG 164
>pdb|3KCP|A Chain A, Crystal Structure Of Interacting Clostridium Thermocellum
Multimodular Components
pdb|4FL4|C Chain C, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
pdb|4FL4|F Chain F, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
pdb|4FL4|I Chain I, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
pdb|4FL4|L Chain L, Scaffoldin Conformation And Dynamics Revealed By A Ternary
Complex From The Clostridium Thermocellum Cellulosome
Length = 321
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 180 PDANNIVIAFPDDGAWKRFHKMLDHFPTVVCAKVREGDKR---IVRIKE-GNPAGCHVVI 235
PD IV F +D + D + AKV+EG + I E G A +V
Sbjct: 78 PDRKMIVFLFAEDSGTGAYAITEDGVFATIVAKVKEGAPEGFSAIEISEFGAFADNDLVE 137
Query: 236 VDDLVQSGGTLIECQKVLAAHGAAKVSAYV 265
V+ + +GG L+ + V+ + KVS Y+
Sbjct: 138 VETDLINGGVLVTNKPVIEGY---KVSGYI 164
>pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1LH0|B Chain B, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1OPR|A Chain A, The Crystal Structure Of The Orotate
Phosphoribosyltransferase Complexed With Orotate And
Alpha-D-5-Phosphoribosyl-1-Pyrophosphate
Length = 213
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 226 GNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPKGSWE 276
G+ V++VDD++ +G + E +++ AHGA ++ +G E
Sbjct: 113 GSALQGRVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGE 163
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 234 VIVDDLVQSGGTLIEC--QKVLAAHGAAKVSAYVTHGVFPKGSWERFTLKNGENMENAF 290
IV + Q+G + + V HG ++ GV P+G+W F K GE+ ++
Sbjct: 6 TIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSY 64
>pdb|1STO|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
Length = 213
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 226 GNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPKGSWE 276
G+ V++VDD++ +G + E +++ AHGA ++ +G E
Sbjct: 113 GSALQGRVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGE 163
>pdb|2E31|A Chain A, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|A Chain A, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|C Chain C, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 297
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 164 LFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRF-HKMLDHFPTVVCAKVREGDKRIVR 222
L+E + LL + L + +A P+DG+W H +D+ P V + G + V
Sbjct: 220 LYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVY 279
Query: 223 IK 224
K
Sbjct: 280 WK 281
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 82 FEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPT 141
F+ I I+ P F ++ +V PF + ER+ GD + F + +P+ GG
Sbjct: 234 FKAIHFIHQ-PWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG-- 290
Query: 142 SLVIYDIHALQERFY 156
+L YD A+ E+ +
Sbjct: 291 TLPKYDGKAVAEQLF 305
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYV 265
G VVI+DDLV +G T +E + L + G VS V
Sbjct: 365 GDRVVIIDDLVSTGETKVEAIEKLRSAGLEVVSIVV 400
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 214 REGDKRIVRIKEGNPA-GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKV 261
+E ++ I+ G+ VV++DD++ +GGT + +++ A GA V
Sbjct: 122 KEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQLVEASGAEVV 170
>pdb|3OHP|A Chain A, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|B Chain B, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|C Chain C, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|D Chain D, Crystal Structure Of Hgprt From Vibrio Cholerae
Length = 177
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 217 DKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLA 254
D RI++ + + G V++V+D++ +G TL + +++LA
Sbjct: 78 DVRILKDLDDDIKGKDVLLVEDIIDTGNTLNKVKEILA 115
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 82 FEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPT 141
F+ I I+ P F ++ +V PF + ER+ GD + F + +P+ GG
Sbjct: 234 FKAIHFIHQ-PWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG-- 290
Query: 142 SLVIYDIHALQERFY 156
+L YD A+ E+ +
Sbjct: 291 TLPKYDGKAVAEQLF 305
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 230 GCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPKGSWERF 278
G V++VDDL+ +GGT+ K++ G A +F G +R
Sbjct: 126 GDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,798,707
Number of Sequences: 62578
Number of extensions: 408847
Number of successful extensions: 864
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 34
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)