BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020394
         (326 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q07WE1|OPGG_SHEFN Glucans biosynthesis protein G OS=Shewanella frigidimarina (strain
           NCIMB 400) GN=opgG PE=3 SV=1
          Length = 559

 Score = 34.3 bits (77), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 13/144 (9%)

Query: 148 RIFFPEANEVKFARKSVFEGASFKLDYLTKPSFFEDFGFTEKVKMADRVKLEDELFLVAY 207
           RI +P  N   F    VF+GAS+    L K S   D+G + +    +  + E E F +  
Sbjct: 197 RIHYPLNNPAYFDELMVFQGASY-FRALGKGS---DYGLSSRGLALNTAEPEGEEFPIFR 252

Query: 208 PYF----NVNGKMLVVEELYKEAVFNTAWKLIIFNGELDRIRSGYYPSFFYPKLAALSKT 263
            ++    N +  ++VV  L        A++  +  GE   I      +  +P++  +   
Sbjct: 253 AFWVERPNTDSNLIVVHALLDSPSVAGAYRFSVRPGENTHID---VEATLFPRVDLVKVG 309

Query: 264 LFPVMETIYYIHNFKGRNGGTLFR 287
           L P   T  ++H+  GR     FR
Sbjct: 310 LAP--STSMFLHSMNGRQNTDDFR 331


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,276,264
Number of Sequences: 539616
Number of extensions: 5305925
Number of successful extensions: 11725
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11725
Number of HSP's gapped (non-prelim): 7
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)